Citrus Sinensis ID: 027331

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MRNGTESVGASSSSSLSSQQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEcccccEEEEEcccccccccEEEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHcccEEEEEEccccEEEEEccccccccccEEEEEEccccEccEcccccccccccccccEccc
Coil and Loop (DISEMBL)
mrngtesvgassssslssqqdteDDRMIALVLSEEYANLDGAVARRlsnlapvphvpkinsyipnmsdaslDHQRLLQRLNVYglyevkvsgdgncqfralsdqmykspeyhKHVRKEVVKQLKDCRSmyegyvpmkYKRYYKNMakvgewgdhVTLQAAADKFAAKICLLTSfrdtcfieimpqhqapkRELWLSFWSEVHYnslydirdapvpkkprkkhwlf
Flexible Loop (DISEMBL)
mrngtesvgassssslssqqdtEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSlydirdapvpkkprkkhwlf
Low Complexity Region (SEG)
MRNGTESVGAssssslssQQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF
Disordered region (IsUnstruct)
**************************MIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRD**************
Disordered Region (DISOPRED)
************************************************************************HQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIM*Q*QAPKRELWLSFWSEVHYNSLYD**************WLF
Disordered Region (DISEMBL)
************************DRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPV***********
Disordered Region (DISPRO)
**************************MIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRK****F
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNGTESVGASSSSSLSSQQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q54P70	766	OTU domain-containing pro	yes	no	0.657	0.193	0.364	1e-19
P22856	867	Putative ubiquitin thioes	N/A	no	0.6	0.155	0.288	4e-08
Q9CUB6	454	OTU domain-containing pro	yes	no	0.546	0.270	0.25	2e-06
Q96G74	571	OTU domain-containing pro	yes	no	0.582	0.229	0.251	2e-06
Q5VV17	481	OTU domain-containing pro	no	no	0.546	0.255	0.25	2e-06
B2RRE7	1107	OTU domain-containing pro	no	no	0.355	0.072	0.312	2e-06
Q08BW0	560	OTU domain-containing pro	no	no	0.568	0.228	0.270	3e-06
Q01804	1113	OTU domain-containing pro	no	no	0.568	0.115	0.244	3e-06
Q9D8C3	1166	UDP-N-acetylglucosamine t	no	no	0.4	0.077	0.277	4e-06
P10383	853	Protein ovarian tumor loc	yes	no	0.573	0.151	0.234	5e-06

>sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 11/159 (6%)

Query: 63  IPNMSDASLDHQRLLQRLNVYGLYEVK-VSGDGNCQFRALSDQMYKSPEYHKHVRKEVVK 121
           +P   +  +  QRL +RL +Y L   K + GDGNCQ  ALSDQ+Y    + + VRK +V 
Sbjct: 608 LPQSKEVQIAQQRLNERLELYMLKNSKEIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVD 667

Query: 122 --------QLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTS 173
                   QL +  ++ +      +  Y  +M+K G WGDH+TL AAA+ F +KI +++S
Sbjct: 668 WLRKNKDFQLPNGATICQFVNTNNWDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISIISS 727

Query: 174 F--RDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIR 210
              +   FIEI+P      + L LS ++E HY SL  +R
Sbjct: 728 VESQSNFFIEIIPSKILNDKVLLLSHYAEFHYGSLCPLR 766

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus GN=L96 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 21/156 (13%)

Query: 76  LLQRLNVYGLYEVKVSGDGNCQFRAL--SDQMYKSPEY-HKHVRKEVVKQLKDCRSMYEG 132
           +L R   Y +  VK  GDGNC FRA+  S ++ ++ +Y H+ +R +VV  L   +   E 
Sbjct: 599 ILARRRGYKVIPVK--GDGNCLFRAVGKSLRLNQNIKYSHEDLRAQVVTYLTSHKEFLEP 656

Query: 133 YV----------PMKY----KRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTC 178
           Y+          P +Y    +RY KN++K G WGD + L+  ++    K  LL    +T 
Sbjct: 657 YLEYVTESGDTTPQEYAKNVERYIKNISKPGTWGDFICLRVLSEILKVKFNLL--ILNTR 714

Query: 179 FIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPV 214
             +++  +   K  + L F  + HY +L  +   P+
Sbjct: 715 NFQVISNNDTFKPLIPLGFIDDYHYTALTPLYAEPI 750

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation (By similarity). May be involved in TIV genomic DNA packaging in a manner related to the Gag polyproteins of the mammalian viruses.

Tipula (taxid: 41043)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9CUB6|OTUD1_MOUSE OTU domain-containing protein 1 OS=Mus musculus GN=Otud1 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 86  YEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNM 145
           Y   +  DGNC +RA+S  +Y     H+ +R++ V  + D    +   +      +    
Sbjct: 283 YRFHIIPDGNCLYRAVSKTVYGDQSLHRELREQTVHYIADHLDHFSPLIEGDVGEFIIAA 342

Query: 146 AKVGEWGDHVTLQAAADKFAAKICLLTSFR-DTCFIEIMPQHQAPKREL----WLSFWSE 200
           A+ G W  +  L A        I L T  R ++  +  M  +  P+  L    WLS+ S 
Sbjct: 343 AQDGAWAGYPELLAMGQMLNVNIHLTTGGRLESPTVSTMIHYLGPEDSLRPSIWLSWLSN 402

Query: 201 VHYNSLYD 208
            HY++++D
Sbjct: 403 GHYDAVFD 410

Mus musculus (taxid: 10090)

>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 4/135 (2%)

Query: 84  GLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYK 143
           G    ++  DG C FRA++DQ+Y   + H+ VRK  +  L      +  YV   +  Y  
Sbjct: 212 GFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 271

Query: 144 NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ----HQAPKRELWLSFWS 199
              K    G+H+ +QA A+ +   + +      T  +E +      HQ     + +S+  
Sbjct: 272 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHR 331

Query: 200 EVHYNSLYDIRDAPV 214
            +HYNS+ +   A +
Sbjct: 332 NIHYNSVVNPNKATI 346

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5VV17|OTUD1_HUMAN OTU domain-containing protein 1 OS=Homo sapiens GN=OTUD1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 86  YEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNM 145
           Y   +  DGNC +RA+S  +Y     H+ +R++ V  + D    +   +      +    
Sbjct: 310 YRFHIIPDGNCLYRAVSKTVYGDQSLHRELREQTVHYIADHLDHFSPLIEGDVGEFIIAA 369

Query: 146 AKVGEWGDHVTLQAAADKFAAKICLLTSFR-DTCFIEIMPQHQAPKREL----WLSFWSE 200
           A+ G W  +  L A        I L T  R ++  +  M  +  P+  L    WLS+ S 
Sbjct: 370 AQDGAWAGYPELLAMGQMLNVNIHLTTGGRLESPTVSTMIHYLGPEDSLRPSIWLSWLSN 429

Query: 201 VHYNSLYD 208
            HY++++D
Sbjct: 430 GHYDAVFD 437

Homo sapiens (taxid: 9606)

>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%)

Query: 80  LNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYK 139
           L   GLY   V+ DG+C FRA+++Q+  S   H  VR   ++ L++ R  +E ++   ++
Sbjct: 29  LRKLGLYRKLVAKDGSCLFRAVAEQVLHSQSRHVEVRMACIRYLRENREKFEAFIEGSFE 88

Query: 140 RYYKNMAKVGEWGDHVTLQA 159
            Y K +    EW   V + A
Sbjct: 89  EYLKRLENPQEWVGQVEISA 108

Mus musculus (taxid: 10090)

>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 84  GLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYK 143
           G    K+  DG C FRA++DQ+Y   + H+ VRK  +  L      +  YV   +  Y  
Sbjct: 210 GFVIKKMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 269

Query: 144 NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD--TCFIEIMPQHQAPKRELWLSFWSEV 201
              K    G+H+ +QA A+ +   + +  S  +    F  I   HQ     + +S+   +
Sbjct: 270 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQSGTEPINTFHGI---HQNNDEPIRVSYHRNI 326

Query: 202 HYNSLYDIRDAPV 214
           HYNS+ +   A +
Sbjct: 327 HYNSVVNPNKATI 339

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 80  LNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYK 139
           L   GLY   V+ DG+C FRA+++Q+  S   H  VR   +  L++ R  +E ++   ++
Sbjct: 29  LRKLGLYRKLVAKDGSCLFRAVAEQVLHSQSRHVEVRMACIHYLRENREKFEAFIEGSFE 88

Query: 140 RYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWS 199
            Y K +    EW   V + A +  +     +   +R+               ++ L F +
Sbjct: 89  EYLKRLENPQEWVGQVEISALSLMYRKDFII---YREPNVSPSQVTENNFPEKVLLCFSN 145

Query: 200 EVHYNSLYDIR 210
             HY+ +Y I+
Sbjct: 146 GNHYDIVYPIK 156

Homo sapiens (taxid: 9606)

>sp|Q9D8C3|ALG13_MOUSE UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Mus musculus GN=Alg13 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 70  SLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSM 129
           SL+   + + L   GL+   V+ D +C FRA+S+Q++ S  +H  +R+  V  +K+ +  
Sbjct: 210 SLNEASMDEYLGSLGLFRKVVAKDASCLFRAISEQLFHSQIHHLQIRRACVSYMKENQQA 269

Query: 130 YEGYVPMKYKRYYKNMAKVGEWGDHVTLQA 159
           +E YV   +++Y + +    E    + L+A
Sbjct: 270 FESYVEGSFEKYLERLGDPKESAGQLELKA 299

Isoform 2 may be involved in protein N-glycosylation, second step of the dolichol-linked oligosaccharide pathway (By. similarity).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 1

>sp|P10383|OTU_DROME Protein ovarian tumor locus OS=Drosophila melanogaster GN=otu PE=2 SV=2

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 78  QRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMK 137
           Q L   GLY    + D +  FR +++QMY +   H  +R E V+ +   R ++E  +P  
Sbjct: 22  QYLESRGLYRKHTARDASSLFRVIAEQMYDTQMLHYEIRLECVRFMTLKRRIFEKEIPGD 81

Query: 138 YKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSF 197
           +  Y ++M+K   +G    L+A +  +   + L   +     +    ++        + F
Sbjct: 82  FDSYMQDMSKPKTYGTMTELRAMSCLYRRNVILYEPYNMGTSVVFNRRY---AENFRVFF 138

Query: 198 WSEVHYNSLYDI 209
            +E H++S+YD+
Sbjct: 139 NNENHFDSVYDV 150

Essential for female fertility; germ cell division and differentiation.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
225451683	226	PREDICTED: OTU domain-containing protein	1.0	0.995	0.849	1e-107
296082232	262	unnamed protein product [Vitis vinifera]	1.0	0.858	0.849	1e-107
224128706	219	predicted protein [Populus trichocarpa]	0.92	0.945	0.884	1e-107
297832724	219	predicted protein [Arabidopsis lyrata su	0.92	0.945	0.835	1e-103
449455768	226	PREDICTED: OTU domain-containing protein	1.0	0.995	0.823	1e-103
15232843	219	cysteine proteinase-like protein [Arabid	0.92	0.945	0.830	1e-102
388497542	228	unknown [Lotus japonicus]	1.0	0.986	0.793	1e-102
222628798	228	hypothetical protein OsJ_14667 [Oryza sa	0.964	0.951	0.776	1e-96
218194790	228	hypothetical protein OsI_15751 [Oryza sa	0.964	0.951	0.771	2e-96
356498681	230	PREDICTED: OTU domain-containing protein	0.92	0.9	0.835	1e-95

>gi|225451683|ref|XP_002278321.1| PREDICTED: OTU domain-containing protein DDB_G0284757 [Vitis vinifera]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/226 (84%), Positives = 210/226 (92%), Gaps = 1/226 (0%)

Query: 1   MRNGTESVG-ASSSSSLSSQQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKI 59
           M NG +SVG  SSS+SLSSQQD EDDRMIA+VLSEE+A LDGAV RRL++L PV HVP+I
Sbjct: 1   MTNGMQSVGECSSSTSLSSQQDLEDDRMIAVVLSEEFAKLDGAVGRRLASLEPVRHVPRI 60

Query: 60  NSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEV 119
           N YIPN+SDASLDHQRL QRLNVY LYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKE+
Sbjct: 61  NFYIPNLSDASLDHQRLQQRLNVYRLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEI 120

Query: 120 VKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCF 179
           VKQLKD RS+YEGYVPMKYKRYYK MAK GEWGDH+TLQAAAD+FAAKICLLTSFRDTCF
Sbjct: 121 VKQLKDYRSLYEGYVPMKYKRYYKKMAKSGEWGDHITLQAAADRFAAKICLLTSFRDTCF 180

Query: 180 IEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 225
           IEI+PQ+QAPKRELWLSFWSEVHYNSLY+I+DAP+ +KPRKKHWLF
Sbjct: 181 IEIIPQYQAPKRELWLSFWSEVHYNSLYEIKDAPIRQKPRKKHWLF 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082232|emb|CBI21237.3| unnamed protein product [Vitis vinifera]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/226 (84%), Positives = 210/226 (92%), Gaps = 1/226 (0%)

Query: 1   MRNGTESVG-ASSSSSLSSQQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKI 59
           M NG +SVG  SSS+SLSSQQD EDDRMIA+VLSEE+A LDGAV RRL++L PV HVP+I
Sbjct: 37  MTNGMQSVGECSSSTSLSSQQDLEDDRMIAVVLSEEFAKLDGAVGRRLASLEPVRHVPRI 96

Query: 60  NSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEV 119
           N YIPN+SDASLDHQRL QRLNVY LYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKE+
Sbjct: 97  NFYIPNLSDASLDHQRLQQRLNVYRLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEI 156

Query: 120 VKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCF 179
           VKQLKD RS+YEGYVPMKYKRYYK MAK GEWGDH+TLQAAAD+FAAKICLLTSFRDTCF
Sbjct: 157 VKQLKDYRSLYEGYVPMKYKRYYKKMAKSGEWGDHITLQAAADRFAAKICLLTSFRDTCF 216

Query: 180 IEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 225
           IEI+PQ+QAPKRELWLSFWSEVHYNSLY+I+DAP+ +KPRKKHWLF
Sbjct: 217 IEIIPQYQAPKRELWLSFWSEVHYNSLYEIKDAPIRQKPRKKHWLF 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128706|ref|XP_002320400.1| predicted protein [Populus trichocarpa] gi|222861173|gb|EEE98715.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/207 (88%), Positives = 198/207 (95%)

Query: 19  QQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQ 78
           Q D EDDRMIALVL+EEYANLDG VA+RLSNLAPVPHVP+INSYIPN+SDASLDHQRLLQ
Sbjct: 13  QHDNEDDRMIALVLTEEYANLDGGVAKRLSNLAPVPHVPRINSYIPNLSDASLDHQRLLQ 72

Query: 79  RLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKY 138
           RLNVYGL EVKVSGDGNCQFRALS+QM+KSPE+HKHVRK+VVKQLK+ RS+YEG+VPMKY
Sbjct: 73  RLNVYGLCEVKVSGDGNCQFRALSEQMFKSPEHHKHVRKDVVKQLKEHRSLYEGHVPMKY 132

Query: 139 KRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFW 198
           KRY K MAK GEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ+Q PKRELWLSFW
Sbjct: 133 KRYCKKMAKSGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQYQPPKRELWLSFW 192

Query: 199 SEVHYNSLYDIRDAPVPKKPRKKHWLF 225
           SEVHYNSLY+IRDAPVP+KP+KKHWLF
Sbjct: 193 SEVHYNSLYEIRDAPVPQKPKKKHWLF 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832724|ref|XP_002884244.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330084|gb|EFH60503.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 173/207 (83%), Positives = 193/207 (93%)

Query: 19  QQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQ 78
           + DTEDDRMIAL+LSEEY+ LDGAV RRLSNLAPVPHVP+IN YIPN++DA+LDHQRLLQ
Sbjct: 13  KNDTEDDRMIALMLSEEYSKLDGAVGRRLSNLAPVPHVPRINCYIPNLNDATLDHQRLLQ 72

Query: 79  RLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKY 138
           RLNVYGL E+KVSGDGNCQFRA+SDQ+Y+SPEYHK VR+EVVKQLKDCRSMYE YVPMKY
Sbjct: 73  RLNVYGLCELKVSGDGNCQFRAVSDQLYRSPEYHKQVRREVVKQLKDCRSMYESYVPMKY 132

Query: 139 KRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFW 198
           KRYYK M K+GEWGDH+TLQAAAD+FAAKICLLTSFRDTCFIEI+PQ+QAPKRELWLSFW
Sbjct: 133 KRYYKRMGKLGEWGDHITLQAAADRFAAKICLLTSFRDTCFIEIIPQYQAPKRELWLSFW 192

Query: 199 SEVHYNSLYDIRDAPVPKKPRKKHWLF 225
           SEVHYNSLYDI+  PV  K ++KHWLF
Sbjct: 193 SEVHYNSLYDIQAVPVQHKAKRKHWLF 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455768|ref|XP_004145623.1| PREDICTED: OTU domain-containing protein DDB_G0284757-like [Cucumis sativus]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/226 (82%), Positives = 204/226 (90%), Gaps = 1/226 (0%)

Query: 1   MRNGTESVG-ASSSSSLSSQQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKI 59
           M   T+S+G  SSS+SLSS QD EDDRMIA+ LSEEYA LDGAVARRLSNLAP+ H P+I
Sbjct: 1   MTPETQSIGECSSSTSLSSHQDVEDDRMIAVALSEEYAKLDGAVARRLSNLAPIAHTPRI 60

Query: 60  NSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEV 119
           N YIPN SDASL++ RLLQRL+VYGL+EVKVSGDGNCQFRALSDQMY+SPEYHKHVRK+V
Sbjct: 61  NLYIPNQSDASLEYHRLLQRLSVYGLHEVKVSGDGNCQFRALSDQMYRSPEYHKHVRKDV 120

Query: 120 VKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCF 179
           VKQLKD RS+YEGYVPMKY RYYK MAK GEWGDHVTLQAAADKFAAKICLLTSFRDTCF
Sbjct: 121 VKQLKDHRSLYEGYVPMKYSRYYKKMAKSGEWGDHVTLQAAADKFAAKICLLTSFRDTCF 180

Query: 180 IEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 225
           IEI+PQ Q PKRELWLSFWSEVHYNSLY+I+D PV +KPR+KHWLF
Sbjct: 181 IEIVPQSQTPKRELWLSFWSEVHYNSLYEIKDVPVQEKPRRKHWLF 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232843|ref|NP_186856.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|6513925|gb|AAF14829.1|AC011664_11 unknown protein [Arabidopsis thaliana] gi|45773792|gb|AAS76700.1| At3g02070 [Arabidopsis thaliana] gi|46402444|gb|AAS92324.1| At3g02070 [Arabidopsis thaliana] gi|222424391|dbj|BAH20151.1| AT3G02070 [Arabidopsis thaliana] gi|332640238|gb|AEE73759.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|407078859|gb|AFS88961.1| OTU-containing deubiquitinating enzyme OTU12 [Arabidopsis thaliana]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/207 (83%), Positives = 192/207 (92%)

Query: 19  QQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQ 78
           ++DTEDDRMIA +LSEEY+ LDGAV RRLSNLAPVPHVP+IN YIPN++DA+LDHQRLLQ
Sbjct: 13  KKDTEDDRMIAFMLSEEYSKLDGAVGRRLSNLAPVPHVPRINCYIPNLNDATLDHQRLLQ 72

Query: 79  RLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKY 138
           RLNVYGL E+KVSGDGNCQFRALSDQ+Y+SPEYHK VR+EVVKQLK+CRSMYE YVPMKY
Sbjct: 73  RLNVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRREVVKQLKECRSMYESYVPMKY 132

Query: 139 KRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFW 198
           KRYYK M K GEWGDH+TLQAAAD+FAAKICLLTSFRDTCFIEI+PQ+QAPK  LWLSFW
Sbjct: 133 KRYYKKMGKFGEWGDHITLQAAADRFAAKICLLTSFRDTCFIEIIPQYQAPKGVLWLSFW 192

Query: 199 SEVHYNSLYDIRDAPVPKKPRKKHWLF 225
           SEVHYNSLYDI+ APV  KP++KHWLF
Sbjct: 193 SEVHYNSLYDIQAAPVQHKPKRKHWLF 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497542|gb|AFK36837.1| unknown [Lotus japonicus]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/228 (79%), Positives = 205/228 (89%), Gaps = 3/228 (1%)

Query: 1   MRNGTES---VGASSSSSLSSQQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVP 57
           M NGT++     +S S+SLSSQQD EDDRMIALVLSEEYA LDG V RRLS L PV HVP
Sbjct: 1   MMNGTQTQYSGESSGSTSLSSQQDIEDDRMIALVLSEEYAKLDGGVGRRLSKLEPVAHVP 60

Query: 58  KINSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRK 117
           +INS IP +SDAS+DHQRLLQRLN+YGL EV+VSGDGNCQFRALSDQ+Y+SPE+HKHVRK
Sbjct: 61  RINSSIPTISDASMDHQRLLQRLNIYGLREVRVSGDGNCQFRALSDQLYRSPEHHKHVRK 120

Query: 118 EVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDT 177
           E+V+QLKD RS+YE YVPMKYKRYYK MAK+GEWGDHVTLQAA+DKFAAKICLLTSFRDT
Sbjct: 121 EIVRQLKDHRSLYECYVPMKYKRYYKKMAKLGEWGDHVTLQAASDKFAAKICLLTSFRDT 180

Query: 178 CFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 225
           CFIEIMP +QAP+RE+WLSFWSEVHYNSLY++RDAP+  KP+KKHWLF
Sbjct: 181 CFIEIMPLYQAPQREIWLSFWSEVHYNSLYEVRDAPIQHKPKKKHWLF 228

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222628798|gb|EEE60930.1| hypothetical protein OsJ_14667 [Oryza sativa Japonica Group]

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 170/219 (77%), Positives = 192/219 (87%), Gaps = 2/219 (0%)

Query: 9   GASSSS--SLSSQQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNM 66
           GASSSS    S + +T+DDRMIA+VLSEEYA LDGA+A+RLSNL  +PHVP+IN+Y P  
Sbjct: 9   GASSSSTSLSSQKSETDDDRMIAMVLSEEYAKLDGAMAKRLSNLTSIPHVPRINTYFPTY 68

Query: 67  SDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDC 126
           SDA++DH RLL RLNVYGLYEV+VSGDGNCQFRALSDQ+Y+SP+YHKHVRKE+VKQLK C
Sbjct: 69  SDATMDHHRLLDRLNVYGLYEVRVSGDGNCQFRALSDQLYRSPDYHKHVRKEIVKQLKAC 128

Query: 127 RSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQH 186
            S+YEGYVPMKYK Y K M K GEWGDHVTLQAAADKFAAKICLLTSFRDTCF+EI+PQ+
Sbjct: 129 NSLYEGYVPMKYKHYCKKMKKSGEWGDHVTLQAAADKFAAKICLLTSFRDTCFVEIVPQY 188

Query: 187 QAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 225
           QAP+RE+WLSFWSEVHYNSLYD RD P   KPRKKHWL 
Sbjct: 189 QAPQREIWLSFWSEVHYNSLYDARDLPSKYKPRKKHWLL 227

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218194790|gb|EEC77217.1| hypothetical protein OsI_15751 [Oryza sativa Indica Group]

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 169/219 (77%), Positives = 192/219 (87%), Gaps = 2/219 (0%)

Query: 9   GASSSS--SLSSQQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNM 66
           GASSSS    S + +T+DDRMIA+VLSEEYA LDGA+A+RLSNL  +PHVP+IN+Y P  
Sbjct: 9   GASSSSTSLSSQKSETDDDRMIAMVLSEEYAKLDGAMAKRLSNLTSIPHVPRINTYFPTY 68

Query: 67  SDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDC 126
           SDA++DH RLL RLNVYGLYEV+VSGDGNCQFRALSDQ+Y+SP+YHKHVRKE+VKQLK C
Sbjct: 69  SDATMDHHRLLDRLNVYGLYEVRVSGDGNCQFRALSDQLYRSPDYHKHVRKEIVKQLKAC 128

Query: 127 RSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQH 186
            S+YEGYVPMKYK Y K M K GEWGDHVTLQAAADKFAAKICLLTSFRDTCF+EI+PQ+
Sbjct: 129 NSLYEGYVPMKYKHYCKKMKKSGEWGDHVTLQAAADKFAAKICLLTSFRDTCFVEIVPQY 188

Query: 187 QAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 225
           QAP+RE+WLSFWSE+HYNSLYD RD P   KPRKKHWL 
Sbjct: 189 QAPQREIWLSFWSEIHYNSLYDARDLPSKYKPRKKHWLL 227

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498681|ref|XP_003518178.1| PREDICTED: OTU domain-containing protein DDB_G0284757-like [Glycine max]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 173/207 (83%), Positives = 192/207 (92%)

Query: 19  QQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQ 78
           QQD EDDRMIALVLSEEYA LDGAV RRL+NL PVPHVP+INS+ P +SDAS+DHQRLLQ
Sbjct: 24  QQDVEDDRMIALVLSEEYAKLDGAVGRRLTNLEPVPHVPRINSFFPTVSDASMDHQRLLQ 83

Query: 79  RLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKY 138
           RLNVYGL EVKVSGDGNCQFRALSDQ+Y+SPE+HKHVRKE+VKQLKD RS+YE YVPMKY
Sbjct: 84  RLNVYGLCEVKVSGDGNCQFRALSDQLYRSPEHHKHVRKEIVKQLKDHRSLYECYVPMKY 143

Query: 139 KRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFW 198
           K+Y+K MAK GEWGDHVTLQAAADKF+AKICLLTSFRDTCFIEIMP +QAP+RELWLSFW
Sbjct: 144 KKYHKKMAKTGEWGDHVTLQAAADKFSAKICLLTSFRDTCFIEIMPLYQAPQRELWLSFW 203

Query: 199 SEVHYNSLYDIRDAPVPKKPRKKHWLF 225
            EVHYNSLY+IRDAP+  KP++KHWLF
Sbjct: 204 CEVHYNSLYEIRDAPIQHKPKRKHWLF 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2078648	219	AT3G02070 [Arabidopsis thalian	0.92	0.945	0.830	5.9e-96
TAIR|locus:2091633	245	AT3G22260 [Arabidopsis thalian	0.911	0.836	0.6	1.1e-66
TAIR|locus:2146673	345	AT5G04250 [Arabidopsis thalian	0.888	0.579	0.524	4.6e-57
TAIR|locus:2142659	356	AT5G03330 [Arabidopsis thalian	0.84	0.530	0.529	1.6e-54
DICTYBASE|DDB_G0284757	766	DDB_G0284757 "OTU domain conta	0.764	0.224	0.340	2.2e-19
GENEDB_PFALCIPARUM|PF10_0308	938	PF10_0308 "OTU-like cysteine p	0.524	0.125	0.341	1.4e-13
UNIPROTKB|Q8IJ91	938	PF10_0308 "OTU-like cysteine p	0.524	0.125	0.341	1.4e-13
DICTYBASE|DDB_G0267906	438	DDB_G0267906 "OTU domain conta	0.608	0.312	0.280	2.7e-12
TAIR|locus:2155588	375	AT5G67170 [Arabidopsis thalian	0.702	0.421	0.284	6.6e-12
TAIR|locus:2056133	189	AT2G39320 [Arabidopsis thalian	0.364	0.433	0.321	5.1e-08

TAIR|locus:2078648 AT3G02070 [Arabidopsis thaliana (taxid:3702)]

 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 172/207 (83%), Positives = 192/207 (92%)

Query:    19 QQDTEDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQ 78
             ++DTEDDRMIA +LSEEY+ LDGAV RRLSNLAPVPHVP+IN YIPN++DA+LDHQRLLQ
Sbjct:    13 KKDTEDDRMIAFMLSEEYSKLDGAVGRRLSNLAPVPHVPRINCYIPNLNDATLDHQRLLQ 72

Query:    79 RLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKY 138
             RLNVYGL E+KVSGDGNCQFRALSDQ+Y+SPEYHK VR+EVVKQLK+CRSMYE YVPMKY
Sbjct:    73 RLNVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRREVVKQLKECRSMYESYVPMKY 132

Query:   139 KRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFW 198
             KRYYK M K GEWGDH+TLQAAAD+FAAKICLLTSFRDTCFIEI+PQ+QAPK  LWLSFW
Sbjct:   133 KRYYKKMGKFGEWGDHITLQAAADRFAAKICLLTSFRDTCFIEIIPQYQAPKGVLWLSFW 192

Query:   199 SEVHYNSLYDIRDAPVPKKPRKKHWLF 225
             SEVHYNSLYDI+ APV  KP++KHWLF
Sbjct:   193 SEVHYNSLYDIQAAPVQHKPKRKHWLF 219

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2091633 AT3G22260 [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 126/210 (60%), Positives = 163/210 (77%)

Query:    21 DTEDDRMIALVLSE-EYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQR 79
             DT+DD+ IA +L+E E    +G + +RLS+L  +PH P++N  IP+++DA+LDH+ L  R
Sbjct:    36 DTDDDQTIARILAEDESLRREGKLGKRLSHLDSIPHTPRVNREIPDINDATLDHELLSGR 95

Query:    80 LNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYK 139
             L  YGL E+++ GDGNCQFRAL+DQ++++ +YHKHVRK VVKQLK  R +YE YVPMKY+
Sbjct:    96 LATYGLAELQMEGDGNCQFRALADQLFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKYR 155

Query:   140 RYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWS 199
              Y + M K GEWGDHVTLQAAAD+F AKICL+TSFRD  +IEI+P ++ P RE WLSFWS
Sbjct:   156 HYTRKMKKHGEWGDHVTLQAAADRFEAKICLVTSFRDQSYIEILPHNKNPLREAWLSFWS 215

Query:   200 EVHYNSLY--DIRDAP-VP-KKPRKKHWLF 225
             EVHYNSLY   +   P VP +KPR+KHWLF
Sbjct:   216 EVHYNSLYANGVLALPDVPTRKPRRKHWLF 245

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2146673 AT5G04250 [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 107/204 (52%), Positives = 147/204 (72%)

Query:    23 EDDRMIALVLSEEYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQRLNV 82
             +DD + ++ + EE  +    V +RL+ + P+ HVPKIN  +P+  +   DH+RL QRL +
Sbjct:   145 DDDSVCSVEIEEESWS---EVGKRLNQMIPIAHVPKINGELPSEDEQISDHERLFQRLQL 201

Query:    83 YGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYY 142
             YGL E K+ GDGNCQFR+LSDQ+Y+SPE+H  VR++VV QL   R +YEGYVPM Y  Y 
Sbjct:   202 YGLVENKIEGDGNCQFRSLSDQLYRSPEHHNFVREQVVNQLAYNREIYEGYVPMAYNDYL 261

Query:   143 KNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVH 202
             K M + GEWGDHVTLQAAAD F  ++ ++TSF+DTC+IEI+P  Q   R + LSFW+EVH
Sbjct:   262 KAMKRNGEWGDHVTLQAAADLFGVRMFVITSFKDTCYIEILPHFQKSNRLICLSFWAEVH 321

Query:   203 YNSLYDIRDAPVPK-KPRKKHWLF 225
             YNS+Y   + P+P+ K +KK+W+F
Sbjct:   322 YNSIYPEGELPIPEGKKKKKYWVF 345

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2142659 AT5G03330 [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 100/189 (52%), Positives = 135/189 (71%)

Query:    35 EYANLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDG 94
             +  + DG   RRL+ + P+P++PKIN  IP   +A  DH+RL  RL ++   EVKV GDG
Sbjct:   163 DQCDADGEFGRRLNQMVPIPYIPKINGEIPPEEEAVSDHERLRNRLEMFDFTEVKVPGDG 222

Query:    95 NCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDH 154
             NCQFRAL+DQ+YK+ + HKHVR+++VKQLK     Y+GYVPM +  Y + M++ GEWGDH
Sbjct:   223 NCQFRALADQLYKTADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDH 282

Query:   155 VTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPV 214
             VTLQAAAD +  KI +LTSF+DTC+IEI+P  Q  K  ++LSFW+EVHYN++Y  RD   
Sbjct:   283 VTLQAAADAYRVKIVVLTSFKDTCYIEILPTSQESKGVIFLSFWAEVHYNAIYLNRDTSE 342

Query:   215 PKKPRKKHW 223
              +  RK+ W
Sbjct:   343 TELQRKRKW 351

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

DICTYBASE|DDB_G0284757 DDB_G0284757 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 242 (90.2 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 63/185 (34%), Positives = 99/185 (53%)

Query:    39 LDGAVARRLSNLAP-VPHVPKINSY-IPNMSDASLDHQRLLQRLNVYGLYEVK-VSGDGN 95
             L+G V + +++ A  +     +N + +P   +  +  QRL +RL +Y L   K + GDGN
Sbjct:   582 LEGLVLKNMNHDASLISSNVLLNLHPLPQSKEVQIAQQRLNERLELYMLKNSKEIPGDGN 641

Query:    96 CQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMY--EGYVPMKYKR------YYKNMAK 147
             CQ  ALSDQ+Y    + + VRK +V  L+  +      G    ++        Y  +M+K
Sbjct:   642 CQMHALSDQLYGDLSHSQEVRKTIVDWLRKNKDFQLPNGATICQFVNTNNWDDYCNDMSK 701

Query:   148 VGEWGDHVTLQAAADKFAAKICLLTSF--RDTCFIEIMPQHQAPKRELWLSFWSEVHYNS 205
              G WGDH+TL AAA+ F +KI +++S   +   FIEI+P      + L LS ++E HY S
Sbjct:   702 NGNWGDHLTLLAAAEHFGSKISIISSVESQSNFFIEIIPSKILNDKVLLLSHYAEFHYGS 761

Query:   206 LYDIR 210
             L  +R
Sbjct:   762 LCPLR 766

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

GENEDB_PFALCIPARUM|PF10_0308 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 189 (71.6 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 42/123 (34%), Positives = 66/123 (53%)

Query:    86 YEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK 143
             Y   +  DGNC FRA+SDQ+Y   E +K +RK+VV+ L     +Y+ ++     YK Y +
Sbjct:    51 YIKSIRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIE 110

Query:   144 NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHY 203
              ++  G WG  + LQA  + +  K+ +L    + C +EI   H    + L L + S  HY
Sbjct:   111 RISLDGTWGGQLELQAVGEIY--KVNILIYQENGCILEIK-NHSDDNKCLQLHYASSEHY 167

Query:   204 NSL 206
             NS+
Sbjct:   168 NSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJ91 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 189 (71.6 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 42/123 (34%), Positives = 66/123 (53%)

Query:    86 YEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK 143
             Y   +  DGNC FRA+SDQ+Y   E +K +RK+VV+ L     +Y+ ++     YK Y +
Sbjct:    51 YIKSIRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIE 110

Query:   144 NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHY 203
              ++  G WG  + LQA  + +  K+ +L    + C +EI   H    + L L + S  HY
Sbjct:   111 RISLDGTWGGQLELQAVGEIY--KVNILIYQENGCILEIK-NHSDDNKCLQLHYASSEHY 167

Query:   204 NSL 206
             NS+
Sbjct:   168 NSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 172 (65.6 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 41/146 (28%), Positives = 76/146 (52%)

Query:    78 QRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMK 137
             Q+L  +G     V+GDGNC FR+++DQ+  +P  H+  R+ + K ++  + M+  ++  +
Sbjct:    57 QQLEPFGFIIKDVAGDGNCLFRSIADQLQDAPNEHRKYREAICKYIEKNKDMFAPFIDDE 116

Query:   138 ----YKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRE- 192
                 ++ Y + M +   WG HV +QAA+   A  + +     D    EI+  H  P++  
Sbjct:   117 EFESFEEYIQEMREDATWGGHVEIQAAS--LAYNVNITIHQMDQPRWEIV-NHFPPEKNK 173

Query:   193 -LWLSFWSEVHYNSLYDIRDAPVPKK 217
              + LS+ ++ HYNS+     +  P K
Sbjct:   174 TIHLSYHNDEHYNSVRPANQSLYPTK 199

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2155588 AT5G67170 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 6.6e-12, P = 6.6e-12
 Identities = 47/165 (28%), Positives = 78/165 (47%)

Query:    57 PKINSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVR 116
             PK   +     D  L   R   +L+  GL  ++V+ DGNC FRA++DQ+  + + H   R
Sbjct:    11 PKKQPHQKQGKDCDLSQFRA--QLDALGLKIIQVTADGNCFFRAIADQLEGNEDEHNKYR 68

Query:   117 KEVVKQLKDCRSMYEGYVP--MKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSF 174
               +V  +   R M+E ++   + ++ Y K M   G W  ++ LQAA+    + IC+  + 
Sbjct:    69 NMIVLYIVKNREMFEPFIEDDVPFEDYCKTMDDDGTWAGNMELQAASLVTRSNICIHRNM 128

Query:   175 RDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDA-PVPKKP 218
                 +I      +   R + LS+    HYNS+    DA   P +P
Sbjct:   129 SPRWYIRNFEDTRT--RMIHLSYHDGEHYNSVRSKEDACGGPARP 171

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2056133 AT2G39320 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query:   122 QLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIE 181
             Q  DC  +    V  +  +   +++   +WGD VTL+ AAD +  KI L+TS +   F+E
Sbjct:    19 QNSDCHEL----VRQEIVKQNMSLSTNSQWGDEVTLRVAADVYQVKIILITSIKLIPFME 74

Query:   182 IMPQHQA-PKRELWLSFWSEVHYNSLY 207
              +P+ Q  P + + +S+ + +H+NS+Y
Sbjct:    75 FLPKSQKEPDKVIHMSYLAGIHFNSIY 101

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	5e-29

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score =  104 bits (262), Expect = 5e-29
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 92  GDGNCQFRALSDQMY--KSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVG 149
           GDGNC F A+SDQ+      E H  +R+ VV+ L++ R  +E ++      YYK ++K G
Sbjct: 2   GDGNCLFHAVSDQLGDAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYKWISKDG 61

Query: 150 EWGDHVTLQAAADKFAAKICLL--TSFRDTCFIEIMP--QHQAPKRELWLSFWS----EV 201
            WG ++ + A A      I +      R T +I+I         K  + LS+        
Sbjct: 62  AWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGLEYTGN 121

Query: 202 HY 203
           HY
Sbjct: 122 HY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.95
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.93
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.91
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.56
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.55
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.4
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.68
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.53
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	90.25
PF05412	108	Peptidase_C33: Equine arterivirus Nsp2-type cystei	87.88
PF05381	104	Peptidase_C21: Tymovirus endopeptidase; InterPro:	87.82

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=7.7e-29  Score=226.22  Aligned_cols=188  Identities=36%  Similarity=0.543  Sum_probs=173.0

Q ss_pred             hhhHHHHHHhcCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhhcCcEEEEeCCCCChhHHHHHHHHhcCchhHHHHHH
Q 027331           38 NLDGAVARRLSNLAPVPHVPKINSYIPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRK  117 (225)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~~L~~~gL~~~~V~GDGNClFrAls~qL~~~~~~h~~lR~  117 (225)
                      ....++|.+++.+.|+++.|.+++.+|+..++..+|+++.+++..+|+..++|.+||||+|||+++|+|++.+.|.++|+
T Consensus       171 ~~~~~~g~~in~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d~e~~~~~~~  250 (371)
T KOG2605|consen  171 PEAKEVGVRINDYNPKVLVPFINGLPPSEEEPQSAHERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYGDDEQHDHNRR  250 (371)
T ss_pred             ccchhhcccccCCCccccccccccCCCchHHHHHHHHHHHHHHHHhhhhhhhcccCCchhhhccHHHhhcCHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccccccccHHHHHHhhcccCCCCCHHHHHHHHH--HhCCcEEEEecCCCceeEEecCCCCCCCCeEEE
Q 027331          118 EVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAAD--KFAAKICLLTSFRDTCFIEIMPQHQAPKRELWL  195 (225)
Q Consensus       118 ~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~k~g~WGd~ieL~A~A~--~f~v~I~V~~~~~~~~~i~~~p~~~~~~~~I~L  195 (225)
                      +++++++.+++.|+.|+++++.+|++++++++.||+|+|+||+|.  -+..++.++++.+.+++++..|....+...+++
T Consensus       251 ~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~  330 (371)
T KOG2605|consen  251 ECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIEESVKMEKY  330 (371)
T ss_pred             HHHHHHhhcccccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccccchhhhhh
Confidence            999999999999999999999999999999999999999999998  778888888888889999988877667777999


Q ss_pred             EecCCCcceeeecC--CCCC--CCCCccccccCC
Q 027331          196 SFWSEVHYNSLYDI--RDAP--VPKKPRKKHWLF  225 (225)
Q Consensus       196 ~~~~~~HY~sl~~~--~d~p--~~~~~~~~~~~~  225 (225)
                      .||...||+.++..  ...+  ...++|+|+|.+
T Consensus       331 n~~~~~h~~~~~~~~~~~~s~~~~~~~~r~~~~~  364 (371)
T KOG2605|consen  331 NFWVEVHYNTARHSGKSADSATLEEKTKRKSLRR  364 (371)
T ss_pred             cccchhhhhhcccccccccccchhhccCCCchhh
Confidence            99999999999984  4443  445678888864

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.93  E-value=1.5e-26  Score=179.60  Aligned_cols=107  Identities=35%  Similarity=0.618  Sum_probs=91.4

Q ss_pred             CCCCChhHHHHHHHHh----cCchhHHHHHHHHHHHHh-hccccccccccccHHHHHHhhcccCCCCCHHHHHHHHHHhC
Q 027331           91 SGDGNCQFRALSDQMY----KSPEYHKHVRKEVVKQLK-DCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFA  165 (225)
Q Consensus        91 ~GDGNClFrAls~qL~----~~~~~h~~lR~~vv~~l~-~n~~~f~~fv~~~~~~Yl~~m~k~g~WGd~ieL~A~A~~f~  165 (225)
                      ||||||||||||+||+    ++++.|.+||+.|++||+ .|++.|.+|+..+      +|+++|+||+++||+|+|++|+
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~a~a~~~~   74 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQALANVLN   74 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHHHHHHHhC
Confidence            7999999999999999    999999999999999999 9999999998655      8999999999999999999999


Q ss_pred             CcEEEEecCCCc--eeEEecCC--CCCCCCeEEEEecC-----CCcc
Q 027331          166 AKICLLTSFRDT--CFIEIMPQ--HQAPKRELWLSFWS-----EVHY  203 (225)
Q Consensus       166 v~I~V~~~~~~~--~~i~~~p~--~~~~~~~I~L~~~~-----~~HY  203 (225)
                      ++|+|++.....  .++.+.+.  .....++|+|+|..     ++||
T Consensus        75 ~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   75 RPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             SEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             CeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence            999999875433  33344331  13457899999988     8998

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5e-24  Score=186.91  Aligned_cols=141  Identities=19%  Similarity=0.380  Sum_probs=122.2

Q ss_pred             hhhHHHHHHHHHhhhcCcEEEEeCCCCChhHHHHHHHHhcCc---hhHHHHHHHHHHHHhhcccccccccc---------
Q 027331           68 DASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSP---EYHKHVRKEVVKQLKDCRSMYEGYVP---------  135 (225)
Q Consensus        68 ~~~~~~~~L~~~L~~~gL~~~~V~GDGNClFrAls~qL~~~~---~~h~~lR~~vv~~l~~n~~~f~~fv~---------  135 (225)
                      ...++.+.|.+.|...||..++||.||+|+|+||++||....   -....||..+.+||+.|.++|.+|+.         
T Consensus       142 ~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~  221 (302)
T KOG2606|consen  142 AKSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLG  221 (302)
T ss_pred             hhhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCC
Confidence            335677899999999999999999999999999999986542   45799999999999999999999863         


Q ss_pred             -ccHHHHHHhhcccCCCCCHHHHHHHHHHhCCcEEEEecCCCceeEEecCCCCCCCCeEEEEecC-----CCcceeeecC
Q 027331          136 -MKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWS-----EVHYNSLYDI  209 (225)
Q Consensus       136 -~~~~~Yl~~m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~~~~i~~~p~~~~~~~~I~L~~~~-----~~HY~sl~~~  209 (225)
                       .+|+.||+.++.++.|||++||.|+|.+|++||.||..++  +.+.|.+...+ .++|.|+|+.     +.|||++.+.
T Consensus       222 ~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~--p~~~~geey~k-d~pL~lvY~rH~y~LGeHYNS~~~~  298 (302)
T KOG2606|consen  222 PEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADG--PILEYGEEYGK-DKPLILVYHRHAYGLGEHYNSVTPL  298 (302)
T ss_pred             HHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCC--CceeechhhCC-CCCeeeehHHhHHHHHhhhcccccc
Confidence             3699999999999999999999999999999999999864  45677766554 6889999876     4999999876


Q ss_pred             CC
Q 027331          210 RD  211 (225)
Q Consensus       210 ~d  211 (225)
                      ..
T Consensus       299 ~n  300 (302)
T KOG2606|consen  299 KN  300 (302)
T ss_pred             cc
Confidence            53

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=3.8e-15  Score=128.77  Aligned_cols=153  Identities=18%  Similarity=0.329  Sum_probs=113.8

Q ss_pred             HHHHHhcCCCCCCCCCCCCCC--CCCCChhhHHHHHHHHHhhhcCcEEEEeCCCCChhHHHHHHHHhcCchh-HHHHHHH
Q 027331           42 AVARRLSNLAPVPHVPKINSY--IPNMSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEY-HKHVRKE  118 (225)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~L~~~L~~~gL~~~~V~GDGNClFrAls~qL~~~~~~-h~~lR~~  118 (225)
                      ++.|||-.- |-++..|.+..  .|.....+            --|.++.||.|..|||+|++..+.+.-.. -.++|+.
T Consensus        78 A~tkrl~pg-Pa~s~q~~~~ste~~~~g~~~------------gvl~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~i  144 (307)
T KOG3288|consen   78 AATKRLPPG-PAPSYQRVLKSTEMSIGGSGE------------GVLSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREI  144 (307)
T ss_pred             HhhccCCCC-CCcCcccccCCCCCCCCCCcc------------ceeEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHH
Confidence            567777653 55555555433  22222211            13566788999999999999998875432 2699999


Q ss_pred             HHHHHhhcccccccc-ccccHHHHHHhhcccCCCCCHHHHHHHHHHhCCcEEEEecCCCceeEEecCCCCCCCCeEEEEe
Q 027331          119 VVKQLKDCRSMYEGY-VPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSF  197 (225)
Q Consensus       119 vv~~l~~n~~~f~~f-v~~~~~~Yl~~m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~~~~i~~~p~~~~~~~~I~L~~  197 (225)
                      +.+...+||+.|... ++..-.+||..+.++..|||.+||..+|+.|++.|+|++.+.  .-+.-+..+......+.|.|
T Consensus       145 iA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~~ygveI~vvDiqt--~rid~fged~~~~~rv~lly  222 (307)
T KOG3288|consen  145 IAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSDYYGVEICVVDIQT--VRIDRFGEDKNFDNRVLLLY  222 (307)
T ss_pred             HHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehhhhceeEEEEecce--eeehhcCCCCCCCceEEEEe
Confidence            999999999999764 566778999999999999999999999999999999999753  23333333333455677888


Q ss_pred             cCCCcceeeecCC
Q 027331          198 WSEVHYNSLYDIR  210 (225)
Q Consensus       198 ~~~~HY~sl~~~~  210 (225)
                       ++-|||+|....
T Consensus       223 -dGIHYD~l~m~~  234 (307)
T KOG3288|consen  223 -DGIHYDPLAMNE  234 (307)
T ss_pred             -cccccChhhhcc
Confidence             799999998665

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.55  E-value=6.7e-14  Score=121.83  Aligned_cols=94  Identities=21%  Similarity=0.324  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhhcccccccccc----ccHHHHHH-hhcccCCCCCHHHHHHHHHHhCCcEEEEecCCC-----ceeEEec
Q 027331          114 HVRKEVVKQLKDCRSMYEGYVP----MKYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD-----TCFIEIM  183 (225)
Q Consensus       114 ~lR~~vv~~l~~n~~~f~~fv~----~~~~~Yl~-~m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~-----~~~i~~~  183 (225)
                      .+|-.+..||+.|++.|++|++    ..+++||. .+...+.-+||+.+.|+|+.++++|.|+.-+++     .....+.
T Consensus       141 flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~  220 (244)
T PF10275_consen  141 FLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFP  220 (244)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES
T ss_pred             HHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCC
Confidence            4555677889999999999997    67999997 467778889999999999999999999987653     1333443


Q ss_pred             CCCCCCCCeEEEEecCCCcceeeec
Q 027331          184 PQHQAPKRELWLSFWSEVHYNSLYD  208 (225)
Q Consensus       184 p~~~~~~~~I~L~~~~~~HY~sl~~  208 (225)
                      |......+.|+|.| ..+|||.++|
T Consensus       221 ~~~~~~~~~i~LLy-rpgHYdIly~  244 (244)
T PF10275_consen  221 PDNESQEPQITLLY-RPGHYDILYP  244 (244)
T ss_dssp             -SSTTSS-SEEEEE-ETBEEEEEEE
T ss_pred             CccCCCCCEEEEEE-cCCccccccC
Confidence            33334578899999 6779999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=8.4e-13  Score=112.75  Aligned_cols=93  Identities=19%  Similarity=0.314  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhhcccccccccc--ccHHHHHHh-hcccCCCCCHHHHHHHHHHhCCcEEEEecCCCce---eEEecCCCC
Q 027331          114 HVRKEVVKQLKDCRSMYEGYVP--MKYKRYYKN-MAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTC---FIEIMPQHQ  187 (225)
Q Consensus       114 ~lR~~vv~~l~~n~~~f~~fv~--~~~~~Yl~~-m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~~~---~i~~~p~~~  187 (225)
                      .+|-.+..+|++|++.|++|++  ++.++||+. ....+.=.||++|.|+|+.+++.|.|...++..+   ....+|.  
T Consensus       158 ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe--  235 (256)
T KOG3991|consen  158 YLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPE--  235 (256)
T ss_pred             HHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCcc--
Confidence            4566677889999999999997  689999995 4555666899999999999999999998765322   1223342  


Q ss_pred             CCCCeEEEEecCCCcceeeecC
Q 027331          188 APKRELWLSFWSEVHYNSLYDI  209 (225)
Q Consensus       188 ~~~~~I~L~~~~~~HY~sl~~~  209 (225)
                      .+.+.|+|.| ..+|||.||+.
T Consensus       236 ~s~P~I~LLY-rpGHYdilY~~  256 (256)
T KOG3991|consen  236 ASAPEIYLLY-RPGHYDILYKK  256 (256)
T ss_pred             ccCceEEEEe-cCCccccccCC
Confidence            3578899999 78899999974

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=4.7e-09  Score=92.66  Aligned_cols=123  Identities=13%  Similarity=0.063  Sum_probs=89.8

Q ss_pred             hhhcCcEEEEeCCCCChhHHHHHHHHhcC-----chhHHHHHHHHHHHHhhcccccccccc-------ccHHHHHHhhcc
Q 027331           80 LNVYGLYEVKVSGDGNCQFRALSDQMYKS-----PEYHKHVRKEVVKQLKDCRSMYEGYVP-------MKYKRYYKNMAK  147 (225)
Q Consensus        80 L~~~gL~~~~V~GDGNClFrAls~qL~~~-----~~~h~~lR~~vv~~l~~n~~~f~~fv~-------~~~~~Yl~~m~k  147 (225)
                      +...+++-..+.|||+|.|-+||+||.-.     -+.-...|-.-..|...+...|.++.-       -.|++|++.|..
T Consensus       166 ~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~~~  245 (306)
T COG5539         166 AYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEVLF  245 (306)
T ss_pred             HHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhhcc
Confidence            33446666788999999999999998642     122355555555666666777776641       379999999999


Q ss_pred             cCCCCCHHHHHHHHHHhCCcEEEEecCCCceeEEecCCCCCCCCeEEEEec----CCCcceee
Q 027331          148 VGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFW----SEVHYNSL  206 (225)
Q Consensus       148 ~g~WGd~ieL~A~A~~f~v~I~V~~~~~~~~~i~~~p~~~~~~~~I~L~~~----~~~HY~sl  206 (225)
                      +..||..++++++|..|++|+.++...+  +.+.+.+.+.+  .+..+.|.    +-+||+++
T Consensus       246 ~a~~g~~~ei~qLas~lk~~~~~~nT~~--~~ik~n~c~~~--~~~e~~~~~Ha~a~GH~n~~  304 (306)
T COG5539         246 DASDGITIEIQQLASLLKNPHYYTNTAS--PSIKCNICGTG--FVGEKDYYAHALATGHYNFG  304 (306)
T ss_pred             cccccchHHHHHHHHHhcCceEEeecCC--ceEEeeccccc--cchhhHHHHHHHhhcCcccc
Confidence            9999999999999999999999998754  56777665442  23333332    22699986

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=5.1e-08  Score=86.20  Aligned_cols=110  Identities=13%  Similarity=0.195  Sum_probs=89.9

Q ss_pred             CCCChhHHHHHHHHhcCchhHHHHHHHHHHHHhhcccccccccc-ccHHHHHHhhcccCCCC-CHHHHHHHHHHhCCcEE
Q 027331           92 GDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVP-MKYKRYYKNMAKVGEWG-DHVTLQAAADKFAAKIC  169 (225)
Q Consensus        92 GDGNClFrAls~qL~~~~~~h~~lR~~vv~~l~~n~~~f~~fv~-~~~~~Yl~~m~k~g~WG-d~ieL~A~A~~f~v~I~  169 (225)
                      .|..|+|+|.+..++..  .-..+|..+.....+||+.|.+.+. -+.-.|+.++.+...|| |++++.++++.|++.|+
T Consensus       119 ~d~srl~q~~~~~l~~a--sv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~  196 (306)
T COG5539         119 DDNSRLFQAERYSLRDA--SVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH  196 (306)
T ss_pred             CchHHHHHHHHhhhhhh--hHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeee
Confidence            46789999999998762  3489999999999999999999875 58889999999999999 99999999999999999


Q ss_pred             EEecCCCceeEEecCCCCCCCCeEEEEecCCCcceeee
Q 027331          170 LLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLY  207 (225)
Q Consensus       170 V~~~~~~~~~i~~~p~~~~~~~~I~L~~~~~~HY~sl~  207 (225)
                      |+....+. -..+.+...  .-.|.+.| .+.|||...
T Consensus       197 ~Vdv~~~~-~dr~~~~~~--~q~~~i~f-~g~hfD~~t  230 (306)
T COG5539         197 VVDVDKDS-EDRYNSHPY--VQRISILF-TGIHFDEET  230 (306)
T ss_pred             eeecchhH-HhhccCChh--hhhhhhhh-cccccchhh
Confidence            99976432 123333322  23467778 788999887

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.25  E-value=0.9  Score=34.05  Aligned_cols=65  Identities=18%  Similarity=0.283  Sum_probs=42.7

Q ss_pred             eCCCCChhHHHHHHHHhcCchhHHHHHHHHHHHHhhccccccccccccHHHHHHhh--cccCCCCCHHHHHHHHHHhCCc
Q 027331           90 VSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNM--AKVGEWGDHVTLQAAADKFAAK  167 (225)
Q Consensus        90 V~GDGNClFrAls~qL~~~~~~h~~lR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m--~k~g~WGd~ieL~A~A~~f~v~  167 (225)
                      +..|.||+.-|+|..|+-+-+   .|...    |..+.        ...+.|+..+  +++.+|-|-   ..+|+.+++.
T Consensus         3 ~sR~NNCLVVAis~~L~~T~e---~l~~~----M~An~--------~~i~~y~~W~r~~~~STW~DC---~mFA~~LkVs   64 (104)
T PF05415_consen    3 ASRPNNCLVVAISECLGVTLE---KLDNL----MQANV--------STIKKYHTWLRKKRPSTWDDC---RMFADALKVS   64 (104)
T ss_pred             ccCCCCeEeehHHHHhcchHH---HHHHH----HHhhH--------HHHHHHHHHHhcCCCCcHHHH---HHHHHhheeE
Confidence            457899999999999988763   22222    22111        2355666644  457888753   3578999998


Q ss_pred             EEEEe
Q 027331          168 ICLLT  172 (225)
Q Consensus       168 I~V~~  172 (225)
                      |.|--
T Consensus        65 m~vkV   69 (104)
T PF05415_consen   65 MQVKV   69 (104)
T ss_pred             EEEEE
Confidence            88754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.88  E-value=0.4  Score=36.88  Aligned_cols=86  Identities=15%  Similarity=0.258  Sum_probs=49.5

Q ss_pred             eCCCCChhHHHHHHHHhcCchhHHHHHHHHHHHHhhccccccccccccHH-HHHHhhcccCCCCCHHHHHHHHHHhCCcE
Q 027331           90 VSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYK-RYYKNMAKVGEWGDHVTLQAAADKFAAKI  168 (225)
Q Consensus        90 V~GDGNClFrAls~qL~~~~~~h~~lR~~vv~~l~~n~~~f~~fv~~~~~-~Yl~~m~k~g~WGd~ieL~A~A~~f~v~I  168 (225)
                      -|+||+|.+|+|+..+++               |          ++.+|. .|-+..+....|.++.-|.-+-..++.|+
T Consensus         4 PP~DG~CG~H~i~aI~n~---------------m----------~~~~~t~~l~~~~r~~d~W~~dedl~~~iq~l~lPa   58 (108)
T PF05412_consen    4 PPGDGSCGWHCIAAIMNH---------------M----------MGGEFTTPLPQRNRPSDDWADDEDLYQVIQSLRLPA   58 (108)
T ss_pred             CCCCCchHHHHHHHHHHH---------------h----------hccCCCccccccCCChHHccChHHHHHHHHHccCce
Confidence            489999999999976653               1          111111 11223356778999888776666667665


Q ss_pred             EEEecCCCceeEEecCCCCCCCCeEEEEecCCCcceeeecCCCCC
Q 027331          169 CLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAP  213 (225)
Q Consensus       169 ~V~~~~~~~~~i~~~p~~~~~~~~I~L~~~~~~HY~sl~~~~d~p  213 (225)
                      -+.-.             ..-....|+.-..+.|+..-+..+-.|
T Consensus        59 t~~~~-------------~~Cp~ArYv~~l~~qHW~V~~~~g~~~   90 (108)
T PF05412_consen   59 TLDRN-------------GACPHARYVLKLDGQHWEVSVRKGRAP   90 (108)
T ss_pred             eccCC-------------CCCCCCEEEEEecCceEEEEEcCCCCc
Confidence            54321             111123344444678888776666333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing

>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.82  E-value=5  Score=30.85  Aligned_cols=90  Identities=14%  Similarity=0.161  Sum_probs=58.0

Q ss_pred             CCChhHHHHHHHHhcCch-hHHHHHHHHHHHHhhccccccccccccHHHHHHhhcccCCCCCHHHHHHHHHHhCCcEEEE
Q 027331           93 DGNCQFRALSDQMYKSPE-YHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLL  171 (225)
Q Consensus        93 DGNClFrAls~qL~~~~~-~h~~lR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~k~g~WGd~ieL~A~A~~f~v~I~V~  171 (225)
                      .-||+.-|+|.|..-.++ -|..|...+=|=+.+|++                +++-|-  .--.+.|+|..|+.+..|+
T Consensus         2 ~~~CLL~A~s~at~~~~~~LW~~L~~~lPDSlL~n~e----------------i~~~GL--STDhltaLa~~~~~~~~~h   63 (104)
T PF05381_consen    2 ALDCLLVAISQATSISPETLWATLCEILPDSLLDNPE----------------IRTLGL--STDHLTALAYRYHFQCTFH   63 (104)
T ss_pred             CcceeHHhhhhhhCCCHHHHHHHHHHhCchhhcCchh----------------hhhcCC--cHHHHHHHHHHHheEEEEE
Confidence            358999999999987762 344444433333333222                133332  2345678999999999999


Q ss_pred             ecCCCceeEEecCCCCCCCCeEEEEecCC--Cccee
Q 027331          172 TSFRDTCFIEIMPQHQAPKRELWLSFWSE--VHYNS  205 (225)
Q Consensus       172 ~~~~~~~~i~~~p~~~~~~~~I~L~~~~~--~HY~s  205 (225)
                      +..+   .+.|...+  ....+.|.|..+  .||..
T Consensus        64 s~~~---~~~~Gi~~--as~~~~I~ht~G~p~HFs~   94 (104)
T PF05381_consen   64 SDHG---VLHYGIKD--ASTVFTITHTPGPPGHFSL   94 (104)
T ss_pred             cCCc---eEEeecCC--CceEEEEEeCCCCCCcccc
Confidence            8754   46676643  356788877554  79998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
3tmp_A	184	The Catalytic Domain Of Human Deubiquitinase Duba I		8e-08
3tmo_A	184	The Catalytic Domain Of Human Deubiquitinase Duba L		1e-07
3pfy_A	185	The Catalytic Domain Of Human Otud5 Length = 185		3e-06

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 93  DGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWG 152
           DG C FRA++DQ+Y   + H+ VRK  +  L      +  YV   +  Y     K    G
Sbjct: 54  DGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHG 113
Query: 153 DHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ----HQAPKRELWLSFWSEVHYNSLYD 208
           +H+ +QA A+ +   + +      T  +E +      HQ     + +S+   +HYNS+ +
Sbjct: 114 NHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVN 173
Query: 209 IRDAPV 214
              A +
Sbjct: 174 PNKATI 179

>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba Length = 184

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 93  DGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWG 152
           DG C FRA++DQ+Y   + H+ VRK     L      +  YV   +  Y     K    G
Sbjct: 54  DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 113
Query: 153 DHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ----HQAPKRELWLSFWSEVHYNSLYD 208
           +H+  QA A+ +   + +      T  +E +      HQ     + +S+   +HYNS+ +
Sbjct: 114 NHIEXQAXAEXYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVN 173
Query: 209 IRDAPV 214
              A +
Sbjct: 174 PNKATI 179

>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5 Length = 185

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 93  DGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWG 152
           DG C FRA++DQ+Y   + H+ VRK     L      +  YV   +  Y     K    G
Sbjct: 67  DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 126
Query: 153 DHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSL 206
           +H+  QA A+ +   + +   +           HQ     + +S+   +HYNS+
Sbjct: 127 NHIEXQAXAEXYNRPVEVY-QYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSV 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
3pfy_A	185	OTU domain-containing protein 5; structural genomi	3e-36
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	5e-30
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-29
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	3e-22

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score =  124 bits (313), Expect = 3e-36
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 1/141 (0%)

Query: 72  DHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYE 131
           +H       +  G    ++  DG C FRA++DQ+Y   + H+ VRK  +  L      + 
Sbjct: 46  EHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFS 105

Query: 132 GYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKR 191
            YV   +  Y     K    G+H+ +QA A+ +   + +   +           HQ    
Sbjct: 106 NYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVY-QYSTEPINTFHGIHQNEDE 164

Query: 192 ELWLSFWSEVHYNSLYDIRDA 212
            + +S+   +HYNS+ +   A
Sbjct: 165 PIRVSYHRNIHYNSVVNPNKA 185

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score =  108 bits (272), Expect = 5e-30
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 6/147 (4%)

Query: 79  RLNVYGLYEV-KVSGDGNCQFRALSDQMYKSPEYHK-HVRKEVVKQLKDCRSMYE---GY 133
           R N+   +E+ +  GDGNC + ++++    +   H  H  K + +         E     
Sbjct: 24  RFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL 83

Query: 134 VPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIM-PQHQAPKRE 192
           V +  + Y K M    EWG  +     A +    I + T          +          
Sbjct: 84  VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTA 143

Query: 193 LWLSFWSEVHYNSLYDIRDAPVPKKPR 219
           + L    + H+++L  +       +  
Sbjct: 144 VNLLHSGQTHFDALRILPQFETDTREA 170

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score =  108 bits (271), Expect = 2e-29
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 6/147 (4%)

Query: 79  RLNVYGLYEVK-VSGDGNCQFRALSDQMYKSPEYHK-HVRKEVVKQLKDC---RSMYEGY 133
           R N+   +E+    GDGNC + ++++    +   H  H  K + +               
Sbjct: 24  RFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL 83

Query: 134 VPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQA-PKRE 192
           V +  + Y K M    EWG  +     A +    I + T          +          
Sbjct: 84  VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTA 143

Query: 193 LWLSFWSEVHYNSLYDIRDAPVPKKPR 219
           + L    + H+++L  +       +  
Sbjct: 144 VNLLHSGQTHFDALRILPQFETDTREA 170

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 89.2 bits (221), Expect = 3e-22
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 84  GLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMY-EGYVPMKYKRYY 142
            L    V  D +C F A++  ++K       +R+ V K++ +    + +  +    K Y 
Sbjct: 19  VLSVHPVLDDNSCLFHAIAYGIFKQDSVRD-LREMVSKEVLNNPVKFNDAILDKPNKDYA 77

Query: 143 KNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVH 202
           + + K+  WG  + +   +D  A  I ++    D   IE   + +     L L  ++ +H
Sbjct: 78  QWILKMESWGGAIEIGIISDALAVAIYVVDI--DAVKIEKFNEDKFDNYILIL--FNGIH 133

Query: 203 YNSLYDIRDAPVPKK 217
           Y+SL       V  K
Sbjct: 134 YDSLTMNEFKTVFNK 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	100.0
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.87
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.84
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.81
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.76
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.91
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.78

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=1.2e-37  Score=260.19  Aligned_cols=142  Identities=23%  Similarity=0.364  Sum_probs=104.9

Q ss_pred             hhhHHHHHHHHHhhhcCcEEEEeCCCCChhHHHHHHHHhcCchhHHHHHHHHHHHHhhccccccccccccHHHHHHhhcc
Q 027331           68 DASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAK  147 (225)
Q Consensus        68 ~~~~~~~~L~~~L~~~gL~~~~V~GDGNClFrAls~qL~~~~~~h~~lR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~k  147 (225)
                      ....+.+.+.+.|+..||++++|+|||||||||||+||+++++.|..||+.|++||++|++.|.+|++++|++||++|++
T Consensus        42 ~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~  121 (185)
T 3pfy_A           42 VEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRK  121 (185)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-------------
T ss_pred             HHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhC
Confidence            33444444444448999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHhCCcEEEEecCCCceeEEecCCCCCCCCeEEEEecCCCcceeeecCC
Q 027331          148 VGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIR  210 (225)
Q Consensus       148 ~g~WGd~ieL~A~A~~f~v~I~V~~~~~~~~~i~~~p~~~~~~~~I~L~~~~~~HY~sl~~~~  210 (225)
                      +++|||++||+|+|++|+++|+|++... .++..+.+......++|+|+|+.++|||||+..+
T Consensus       122 ~~~WGg~iEL~AlS~~~~v~I~V~~~~~-~~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~  183 (185)
T 3pfy_A          122 NNCHGNHIEMQAMAEMYNRPVEVYQYST-EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN  183 (185)
T ss_dssp             ----CCHHHHHHHHHHHTSCEEEESSCS-SCSEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred             CCccchHHHHHHHHHhhCCcEEEEECCC-CCeEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence            9999999999999999999999999753 2333333333345789999999999999998754

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=100.00  E-value=1.9e-33  Score=239.36  Aligned_cols=124  Identities=18%  Similarity=0.248  Sum_probs=111.5

Q ss_pred             hhcCcEEEEeCCCCChhHHHHHHHHhcCchhHHHHHHHHHHHHhhcccccc-ccccccHHHHHHhhcccCCCCCHHHHHH
Q 027331           81 NVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYE-GYVPMKYKRYYKNMAKVGEWGDHVTLQA  159 (225)
Q Consensus        81 ~~~gL~~~~V~GDGNClFrAls~qL~~~~~~h~~lR~~vv~~l~~n~~~f~-~fv~~~~~~Yl~~m~k~g~WGd~ieL~A  159 (225)
                      ...||.+++|+|||||||||||+|| ++++.|..||+.+++||++|++.|. .|++++|++||++|+++++|||++||+|
T Consensus        16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A   94 (212)
T 3by4_A           16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI   94 (212)
T ss_dssp             CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence            4458999999999999999999999 8999999999999999999999996 5678999999999999999999999999


Q ss_pred             HHHHhCCcEEEEecCCCceeEEecCCCCCCCCeEEEEecCCCcceeeecC
Q 027331          160 AADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDI  209 (225)
Q Consensus       160 ~A~~f~v~I~V~~~~~~~~~i~~~p~~~~~~~~I~L~~~~~~HY~sl~~~  209 (225)
                      +|++|+++|.|++... ...+.|.+..  ..++|+|+|+ ++|||+|+..
T Consensus        95 ls~~~~~~I~V~~~~~-~~~~~~~~~~--~~~~I~L~Y~-g~HYdsl~~~  140 (212)
T 3by4_A           95 ISDALAVAIYVVDIDA-VKIEKFNEDK--FDNYILILFN-GIHYDSLTMN  140 (212)
T ss_dssp             HHHHHTCEEEEEETTT-TEEEEESTTT--CSEEEEEEEC-SSCEEEEEET
T ss_pred             HHHHHCCCEEEEECCC-CCeEEeCCCC--CCCeEEEEEc-CCcceEEecC
Confidence            9999999999999863 4566665543  5779999996 8999999993

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.97  E-value=2.1e-31  Score=222.50  Aligned_cols=125  Identities=17%  Similarity=0.263  Sum_probs=108.7

Q ss_pred             cEEEEeCCCCChhHHHHHHHHhcC-chh-----HHHHHHHHHHHHhhccccccccccccHHHHHHhhcccCCCCCHHHHH
Q 027331           85 LYEVKVSGDGNCQFRALSDQMYKS-PEY-----HKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQ  158 (225)
Q Consensus        85 L~~~~V~GDGNClFrAls~qL~~~-~~~-----h~~lR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~k~g~WGd~ieL~  158 (225)
                      +.+.+|+|||||||||||+||+++ ++.     |.+||+.+++||++|++.  .+++++|++||++|+++|+|||++||+
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~  108 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS  108 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence            778889999999999999999998 666     999999999999999999  357899999999999999999999999


Q ss_pred             HHHHHhCCcEEEEecCCCc---eeEEecCCCCCCCCeEEEEecCCCcceeeecCCCCC
Q 027331          159 AAADKFAAKICLLTSFRDT---CFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAP  213 (225)
Q Consensus       159 A~A~~f~v~I~V~~~~~~~---~~i~~~p~~~~~~~~I~L~~~~~~HY~sl~~~~d~p  213 (225)
                      |+|++|+++|+|++.+..+   ..+.|.+..  ..++|+|+|++++|||+|++..+.+
T Consensus       109 Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~--~~~~I~L~Y~g~~HYdsl~~~~~~~  164 (185)
T 3phx_A          109 MLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRILPQFE  164 (185)
T ss_dssp             HHHHHHCCCEEEEEC--CCBCCEEEEESSCC--TTTSEEEEEETTTEEEEEEECGGGC
T ss_pred             HHHHHHCCcEEEEEecCCCCceEEEEcCCCC--CCCEEEEEECCCcCchhceECCCCC
Confidence            9999999999999865533   245665543  3789999998779999999987764

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.97  E-value=5.4e-31  Score=224.94  Aligned_cols=126  Identities=17%  Similarity=0.261  Sum_probs=110.5

Q ss_pred             cEEEEeCCCCChhHHHHHHHHhcC-chh-----HHHHHHHHHHHHhhccccccccccccHHHHHHhhcccCCCCCHHHHH
Q 027331           85 LYEVKVSGDGNCQFRALSDQMYKS-PEY-----HKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQ  158 (225)
Q Consensus        85 L~~~~V~GDGNClFrAls~qL~~~-~~~-----h~~lR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~k~g~WGd~ieL~  158 (225)
                      +.+++|+|||||||||||+||+++ ++.     |..||+.|++||++|++.  .+++++|++||++|+++|+|||++||+
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~  108 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS  108 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHH
Confidence            778899999999999999999998 566     999999999999999999  357899999999999999999999999


Q ss_pred             HHHHHhCCcEEEEecCCC---ceeEEecCCCCCCCCeEEEEecCCCcceeeecCCCCCC
Q 027331          159 AAADKFAAKICLLTSFRD---TCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPV  214 (225)
Q Consensus       159 A~A~~f~v~I~V~~~~~~---~~~i~~~p~~~~~~~~I~L~~~~~~HY~sl~~~~d~p~  214 (225)
                      |+|++|+++|+|+..+..   ...+.|.+..  ..++|+|+|++++|||+|++..+...
T Consensus       109 AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~--~~~~I~L~Y~g~~HYdSL~~~~d~~~  165 (219)
T 3phu_A          109 MLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRILPQFET  165 (219)
T ss_dssp             HHHHHTTCCEEEEEESSSSBEEEEEEESSCC--TTTSEEEEEETTTEEEEEEECTTTCC
T ss_pred             HHHHHhCCCEEEEEecCCCCceeEEEecCCC--CCCeEEEEECCCcCchhheECCCCCC
Confidence            999999999999986553   2355665543  37899999987799999999987643

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.87  E-value=7.4e-22  Score=170.12  Aligned_cols=95  Identities=14%  Similarity=0.292  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHhhccccccccccc--cHHHHHH-hhcccCCCCCHHHHHHHHHHhCCcEEEEecCCCceeEE--ecCCCC
Q 027331          113 KHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIE--IMPQHQ  187 (225)
Q Consensus       113 ~~lR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~~~~i~--~~p~~~  187 (225)
                      ..+|..+..||+.|+++|.+|+++  ++++||+ .+...++|||+++|+|+|+.|+++|.|+..+++..-+.  ..|.  
T Consensus       133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~--  210 (234)
T 1tff_A          133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE--  210 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC--
T ss_pred             HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC--
Confidence            457999999999999999999975  8999999 79999999999999999999999999999765431111  1232  


Q ss_pred             CCCCeEEEEecCCCcceeeecCC
Q 027331          188 APKRELWLSFWSEVHYNSLYDIR  210 (225)
Q Consensus       188 ~~~~~I~L~~~~~~HY~sl~~~~  210 (225)
                      ...+.|+|+|. ++|||+|+|..
T Consensus       211 ~~~~~I~LlY~-pgHYdily~~~  232 (234)
T 1tff_A          211 AATPSVYLLYK-TSHYNILYAAD  232 (234)
T ss_dssp             CSSCSEEEEEE-TTEEEEEEECC
T ss_pred             CCCCeEEEEEC-CCCceecccCC
Confidence            24678999995 66999999874

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.84  E-value=3.1e-20  Score=159.94  Aligned_cols=92  Identities=18%  Similarity=0.296  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhhccccccccccc--cHHHHHH-hhcccCCCCCHHHHHHHHHHhCCcEEEEecCCCc---eeEEecCCCC
Q 027331          114 HVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDT---CFIEIMPQHQ  187 (225)
Q Consensus       114 ~lR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~~---~~i~~~p~~~  187 (225)
                      .+|..+..||+.|+++|.+|+++  ++++||+ .+...++|||+++|+|+|+.|+++|.|+..++..   ......|.+ 
T Consensus       137 ~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~-  215 (234)
T 2zfy_A          137 YLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG-  215 (234)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTT-
T ss_pred             HHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCC-
Confidence            67888889999999999999975  8999997 6999999999999999999999999999976542   222233432 


Q ss_pred             CCCCeEEEEecCCCcceeeec
Q 027331          188 APKRELWLSFWSEVHYNSLYD  208 (225)
Q Consensus       188 ~~~~~I~L~~~~~~HY~sl~~  208 (225)
                       ..+.|+|+|. .+|||+|+|
T Consensus       216 -~~p~I~LlY~-pgHYdiLy~  234 (234)
T 2zfy_A          216 -SEPKVYLLYR-PGHYDILYK  234 (234)
T ss_dssp             -CCCSEEEEEE-TTEEEEEEC
T ss_pred             -CCCeEEEEEC-CCCcccCCC
Confidence             3678999995 569999986

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.81  E-value=3.1e-19  Score=157.13  Aligned_cols=101  Identities=16%  Similarity=0.246  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHhhcccccccccc--ccHHHHHH-hhcccCCCCCHHHHHHHHHHhCCcEEEEecCCC--c--eeEE-ecC
Q 027331          113 KHVRKEVVKQLKDCRSMYEGYVP--MKYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD--T--CFIE-IMP  184 (225)
Q Consensus       113 ~~lR~~vv~~l~~n~~~f~~fv~--~~~~~Yl~-~m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~--~--~~i~-~~p  184 (225)
                      ..||..+..||+.|+++|.+|++  +++++||+ .+...++|||+++|.|+|+.|+++|.|+..+++  +  .... | |
T Consensus       171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-p  249 (284)
T 4dhi_B          171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-P  249 (284)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-S
T ss_pred             HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-C
Confidence            46778899999999999999996  48999999 899999999999999999999999999986542  1  2233 5 7


Q ss_pred             CCCC-CCCeEEEEecCCCcceeeecCCCCCCC
Q 027331          185 QHQA-PKRELWLSFWSEVHYNSLYDIRDAPVP  215 (225)
Q Consensus       185 ~~~~-~~~~I~L~~~~~~HY~sl~~~~d~p~~  215 (225)
                      .+.. ..+.|+|.| ..+|||.||+....|+.
T Consensus       250 ~~~~~~~p~I~LLY-rpgHYDILY~~~p~~~~  280 (284)
T 4dhi_B          250 SDDQQIAPEITLLY-RPGHYDVIYKKDSTEAS  280 (284)
T ss_dssp             CCCSCCCCSEEEEE-ETTEEEEEEECC-----
T ss_pred             CCCCCCCCEEEEee-cCCCccccccCCCCchh
Confidence            6432 347899999 67899999999866543

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.76  E-value=2.8e-18  Score=157.97  Aligned_cols=94  Identities=19%  Similarity=0.291  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhhccccccccccc--cHHHHHH-hhcccCCCCCHHHHHHHHHHhCCcEEEEecCCC---ceeEEecCC
Q 027331          112 HKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD---TCFIEIMPQ  185 (225)
Q Consensus       112 h~~lR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~---~~~i~~~p~  185 (225)
                      ...+|..+..||+.|+++|.+|+++  ++++||+ .+...++|||+++|.|+|+.|+++|.|+..++.   .......|.
T Consensus       300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~  379 (399)
T 4ddg_A          300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE  379 (399)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT
T ss_pred             HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC
Confidence            3468888899999999999999975  7999999 899999999999999999999999999975542   111122354


Q ss_pred             CCCCCCeEEEEecCCCcceeeec
Q 027331          186 HQAPKRELWLSFWSEVHYNSLYD  208 (225)
Q Consensus       186 ~~~~~~~I~L~~~~~~HY~sl~~  208 (225)
                      +  ..+.|+|.| ..+|||.||+
T Consensus       380 ~--~~~~I~LLY-rPgHYDiLY~  399 (399)
T 4ddg_A          380 G--SEPKVYLLY-RPGHYDILYK  399 (399)
T ss_dssp             T--CCCCCEEEE-ETBEEEEEEC
T ss_pred             C--CCCEEEEEE-cCCccccCCC
Confidence            3  367899999 6789999986

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.91  E-value=1.8e-08  Score=90.62  Aligned_cols=127  Identities=19%  Similarity=0.327  Sum_probs=89.8

Q ss_pred             cEEEEeCCCCChhHHHHHHHHhcCchhHHHHHHHHHHHHhhccc-cc-----------cccc-----------cccHHHH
Q 027331           85 LYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRS-MY-----------EGYV-----------PMKYKRY  141 (225)
Q Consensus        85 L~~~~V~GDGNClFrAls~qL~~~~~~h~~lR~~vv~~l~~n~~-~f-----------~~fv-----------~~~~~~Y  141 (225)
                      |....+.||||||.+|+|.+++|-.|....+|+.+.+-|+.... .|           +.|+           ..+|+.-
T Consensus       112 L~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~I  191 (390)
T 3dkb_A          112 LVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNL  191 (390)
T ss_dssp             EEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHH
T ss_pred             eEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHH
Confidence            56778899999999999999999999999999999888876542 11           1232           1466666


Q ss_pred             HHhhcccC---------CCCCHHHHHHHHHHhCCcEEEEecC--C---Cc-ee------EEecCC----CCCCCCeEEEE
Q 027331          142 YKNMAKVG---------EWGDHVTLQAAADKFAAKICLLTSF--R---DT-CF------IEIMPQ----HQAPKRELWLS  196 (225)
Q Consensus       142 l~~m~k~g---------~WGd~ieL~A~A~~f~v~I~V~~~~--~---~~-~~------i~~~p~----~~~~~~~I~L~  196 (225)
                      ++..+...         .--.++.+.++|+++++||+|+...  +   ++ .+      =.|.|-    ......+|.|+
T Consensus       192 v~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~Lg  271 (390)
T 3dkb_A          192 IKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLG  271 (390)
T ss_dssp             HHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEE
T ss_pred             HHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEE
Confidence            66544332         1236899999999999999999632  1   11 11      123443    22346799999


Q ss_pred             ecCCCcceeeecCCCC
Q 027331          197 FWSEVHYNSLYDIRDA  212 (225)
Q Consensus       197 ~~~~~HY~sl~~~~d~  212 (225)
                      |. .+||.+|.+..+-
T Consensus       272 Y~-s~HFsaLV~me~~  286 (390)
T 3dkb_A          272 YD-SHHFVPLVTLKDS  286 (390)
T ss_dssp             EC-SSCEEEEEEBCSS
T ss_pred             ec-cCceeeeeecccC
Confidence            94 6899999998753

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.78  E-value=2.8e-08  Score=90.81  Aligned_cols=128  Identities=13%  Similarity=0.188  Sum_probs=94.9

Q ss_pred             CcEEEEeCCCCChhHHHHHHHHhcCchhHHHHHHHHHHHHhhccccc-c---------------ccc--c----ccHHHH
Q 027331           84 GLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMY-E---------------GYV--P----MKYKRY  141 (225)
Q Consensus        84 gL~~~~V~GDGNClFrAls~qL~~~~~~h~~lR~~vv~~l~~n~~~f-~---------------~fv--~----~~~~~Y  141 (225)
                      .|......||||||.+|+|..++|-.|....||+.+.+-|......| .               .|.  +    .+|+.-
T Consensus       188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i  267 (454)
T 3zrh_A          188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI  267 (454)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred             ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence            35567788999999999999999999999999999998887643222 1               232  2    356666


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHhCCcEEEEecCCC----c-ee------EEecCCCC----CCCCeEEEEecCCCcceee
Q 027331          142 YKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD----T-CF------IEIMPQHQ----APKRELWLSFWSEVHYNSL  206 (225)
Q Consensus       142 l~~m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~----~-~~------i~~~p~~~----~~~~~I~L~~~~~~HY~sl  206 (225)
                      ++..+.+|.--.++.+.++|+++++||+|+....-    + .+      =.|.|-..    ....+|.|+|. ..||.+|
T Consensus       268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~-~gHFsaL  346 (454)
T 3zrh_A          268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYT-RGHFSAL  346 (454)
T ss_dssp             HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEE-TTEEEEE
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEec-ccceeee
Confidence            77677788877899999999999999999984210    0 00      12445332    34679999995 6799999


Q ss_pred             ecCCCC
Q 027331          207 YDIRDA  212 (225)
Q Consensus       207 ~~~~d~  212 (225)
                      .+..+.
T Consensus       347 V~~~~~  352 (454)
T 3zrh_A          347 VAMEND  352 (454)
T ss_dssp             EEBCCC
T ss_pred             eecccc
Confidence            998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	2e-09

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 2e-09
 Identities = 12/114 (10%), Positives = 36/114 (31%), Gaps = 4/114 (3%)

Query: 97  QFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKR---YYKNMAKVGEWGD 153
               + +    S    + +R      +++    +  ++  +          +  +    D
Sbjct: 111 SLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECD 170

Query: 154 HVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLY 207
           H+ + A +   +  + +         +      +A    ++L +    HYN LY
Sbjct: 171 HIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLY-KTSHYNILY 223

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.86

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.3e-21  Score=165.68  Aligned_cols=96  Identities=14%  Similarity=0.245  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhhcccccccccc--ccHHHHHHh-hcccCCCCCHHHHHHHHHHhCCcEEEEecCCCceeEEecCCCCCCC
Q 027331          114 HVRKEVVKQLKDCRSMYEGYVP--MKYKRYYKN-MAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPK  190 (225)
Q Consensus       114 ~lR~~vv~~l~~n~~~f~~fv~--~~~~~Yl~~-m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~~~~i~~~p~~~~~~  190 (225)
                      .+|..+..||+.|++.|.+|++  +++++||.+ +.+.++|||+++|+|+|++|+++|.|+..+.....+..........
T Consensus       128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~  207 (228)
T d1tffa_         128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAAT  207 (228)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSS
T ss_pred             HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCC
Confidence            4699999999999999999995  579999986 8899999999999999999999999998765433222211122346


Q ss_pred             CeEEEEecCCCcceeeecCC
Q 027331          191 RELWLSFWSEVHYNSLYDIR  210 (225)
Q Consensus       191 ~~I~L~~~~~~HY~sl~~~~  210 (225)
                      +.|+|.| .++|||.|+|.+
T Consensus       208 ~~I~Lly-~pgHYdiLY~~~  226 (228)
T d1tffa_         208 PSVYLLY-KTSHYNILYAAD  226 (228)
T ss_dssp             CSEEEEE-ETTEEEEEEECC
T ss_pred             CEEEEEe-CCCCcccCccCC
Confidence            7899999 678999999875