Citrus Sinensis ID: 027371

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MEQSRCRESANSSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSFCLLRVPIGLRLRCRLSVTEGECRCYCFNKKKTSTLPPPK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHcccEEEEEcccccEEEEEEEEccccEEEEEEEEccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccEEEEEEEcccEEEEEEEccccccccccEEEcccHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHcccHEEEEcccccEEEEEEEEccccEEEEEEEEccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccHHHEEEEccccEEEEEEEccccccccccEEEccccHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccEEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
meqsrcresansssfsrSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEiqldknyprsppsisadvpyifnlKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKslwvidlknpsranvCRQINLGYNCIIMLSihiddpsslpecrfmgsdpmvnSLRKTWQrnskrcassssfcllrvpiglrlrcrlsvtegecrcycfnkkktstlpppk
Flexible Loop (DISEMBL)
meqsrcresansssfsrsvYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIqldknyprsppsisADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQrnskrcassssfcllrvpiglRLRCRLsvtegecrcycfnkkktstlpppk
Low Complexity Region (SEG)
MEQsrcresansssfsrsvyseieEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSFCLLRVPIGLRLRCRLSVTEGECRCYCFNKKKTSTLPPPK
Disordered region (IsUnstruct)
******************VYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYP****SISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFM***********TW******CASSSSFCLLRVPIGLRLRCRLSVTEGECRCYCFN***********
Disordered Region (DISOPRED)
************SSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSFCLLRVPIGLRLRCR*SVTEGECRCYCFNKKK*S******
Disordered Region (DISEMBL)
******************VYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLR************SSSFCLLRVPIGLRLRCRLSVTEGECRCYCFNKK*********
Disordered Region (DISPRO)
*****C*ESANSSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSFCLLRVPIGLRLRCRLSVTEGECRCYCFNKKKTSTLP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQSRCRESANSSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRxxxxxxxxxxxxxxxxxxxxxWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSFCLLRVPIGLRLRCRLSVTEGECRCYCFNKKKTSTLPPPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q9CR14	375	E3 ubiquitin-protein liga	yes	no	0.700	0.418	0.331	5e-24
Q9NW38	375	E3 ubiquitin-protein liga	yes	no	0.718	0.429	0.329	7e-23

>sp|Q9CR14|FANCL_MOUSE E3 ubiquitin-protein ligase FANCL OS=Mus musculus GN=Fancl PE=1 SV=1

 Score =  111 bits (277), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 84/157 (53%)

Query: 12  SSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSIS 71
           S SF + + +EI  +GW+ L  +      +  +  D  GR H + ++L   YP  PP   
Sbjct: 107 SCSFCKDLLTEIGAIGWDKLACVESSFSTIKLKADDASGRKHLITVKLKAKYPVEPPDCV 166

Query: 72  ADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCR 131
            D P  F++ W+ +S L D+  QF   LE L+  W+++DEID+  WV++ + P R+   R
Sbjct: 167 VDFPVPFSVSWTPQSSLVDVYSQFLVALETLKVFWDVMDEIDEKTWVLEPEKPPRSATAR 226

Query: 132 QINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSL 168
           +I LG N  I + +    P+ LPE  F+G+D +   L
Sbjct: 227 RIALGKNVSIAIEVDPRHPTMLPEFCFLGADHVTKPL 263

Ubiquitin ligase protein that mediates monoubiquitination of FANCD2, a key step in the DNA damage pathway. Also mediates monoubiquitination of FANCI. May stimulate the ubiquitin release from UBE2W. May be required for proper primordial germ cell proliferation in the embryonic stage, whereas it is probably not needed for spermatogonial proliferation after birth.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9NW38|FANCL_HUMAN E3 ubiquitin-protein ligase FANCL OS=Homo sapiens GN=FANCL PE=1 SV=2

 Score =  107 bits (267), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 81/161 (50%)

Query: 15  FSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADV 74
           F  S+  EI  +GW+ LV        +  +  D  GR H + ++L   YP   P    D 
Sbjct: 110 FYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDF 169

Query: 75  PYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQIN 134
           P  F   W+ +S L  +  QF   +E L+  W+++DEID+  WV++ + P R+   R+I 
Sbjct: 170 PVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIA 229

Query: 135 LGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRN 175
           LG N  I + +    P+ LPEC F+G+D +V  L     RN
Sbjct: 230 LGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRN 270


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.135    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,817,820
Number of Sequences: 539616
Number of extensions: 3179820
Number of successful extensions: 8406
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8403
Number of HSP's gapped (non-prelim): 9
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)

Ubiquitin ligase protein that mediates monoubiquitination of FANCD2, a key step in the DNA damage pathway. Also mediates monoubiquitination of FANCI. May stimulate the ubiquitin release from UBE2W. May be required for proper primordial germ cell proliferation in the embryonic stage, whereas it is probably not needed for spermatogonial proliferation after birth.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
224097206	270	predicted protein [Populus trichocarpa]	0.700	0.581	0.687	5e-57
297797607	308	hypothetical protein ARALYDRAFT_496810 [	0.866	0.629	0.533	1e-55
79332463	300	zinc ion binding protein [Arabidopsis th	0.857	0.64	0.534	3e-55
255582393	309	Ubiquitin ligase protein FANCL, putative	0.660	0.478	0.581	5e-44
212721800	322	uncharacterized protein LOC100192745 [Ze	0.772	0.537	0.482	2e-43
195620462	322	ubiquitin ligase protein FANCL [Zea mays	0.767	0.534	0.491	2e-43
357115395	311	PREDICTED: E3 ubiquitin-protein ligase F	0.763	0.549	0.497	9e-42
242033117	361	hypothetical protein SORBIDRAFT_01g00949	0.732	0.454	0.475	2e-40
115455075	308	Os03g0726900 [Oryza sativa Japonica Grou	0.772	0.561	0.451	3e-39
218193683	308	hypothetical protein OsI_13372 [Oryza sa	0.772	0.561	0.451	2e-38

>gi|224097206|ref|XP_002310876.1| predicted protein [Populus trichocarpa] gi|222853779|gb|EEE91326.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 108/157 (68%), Positives = 128/157 (81%)

Query: 22  EIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLK 81
           +IEEVGWE LVR   DL+FLSFR+ DKKGRVH MEIQLDK YP+ PPS+SA+VPYIFN+K
Sbjct: 1   QIEEVGWERLVRFGGDLEFLSFRITDKKGRVHIMEIQLDKTYPQKPPSVSAEVPYIFNVK 60

Query: 82  WSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCII 141
           WS KSRLKDL+ QFREHLE+LQE W+ L++ID SL V + K  SRA  CRQI++G +C I
Sbjct: 61  WSVKSRLKDLVLQFREHLEELQEFWSTLEDIDHSLCVTNKKKLSRATTCRQIDIGNDCSI 120

Query: 142 MLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKR 178
           MLSI+  DP SLPECRFMGS P+VN +RK W RN+KR
Sbjct: 121 MLSINARDPRSLPECRFMGSGPVVNPVRKLWLRNNKR 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797607|ref|XP_002866688.1| hypothetical protein ARALYDRAFT_496810 [Arabidopsis lyrata subsp. lyrata] gi|297312523|gb|EFH42947.1| hypothetical protein ARALYDRAFT_496810 [Arabidopsis lyrata subsp. lyrata]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 145/206 (70%), Gaps = 12/206 (5%)

Query: 1   MEQSRCRESANSSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLD 60
           + + RC E A SSSF R VYSEIEE+GWE L RL  DL F SF++ DKKGR H +E QL+
Sbjct: 9   IGRERCEELAKSSSFYRKVYSEIEEIGWEPLRRLGGDLTFFSFQIFDKKGRAHNLEFQLN 68

Query: 61  KNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVID 120
           ++YP SPPS+SADVPY+F L+WS  SRLKDL+ QF++HL+ LQE W++LD+IDKSL ++D
Sbjct: 69  RDYPNSPPSVSADVPYMFTLEWSTSSRLKDLMYQFQKHLDYLQEFWSVLDDIDKSLCIVD 128

Query: 121 LKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDP---MVNSLRKTWQRNSK 177
            K PSRA+  R+I+ G +CI+++ I   DP SLPECRF+G  P    +NSL   W+RNSK
Sbjct: 129 AKQPSRASAIRRIHAGNDCILIVHIDFKDPKSLPECRFIGPVPPATHMNSLHMLWRRNSK 188

Query: 178 RCASSSSF-----CLLRV----PIGL 194
           + +    F     C+L      P+GL
Sbjct: 189 KWSKERPFPENLECILGTELPKPLGL 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79332463|ref|NP_001032152.1| zinc ion binding protein [Arabidopsis thaliana] gi|222424329|dbj|BAH20121.1| AT5G65740 [Arabidopsis thaliana] gi|332010715|gb|AED98098.1| zinc ion binding protein [Arabidopsis thaliana]

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/204 (53%), Positives = 146/204 (71%), Gaps = 12/204 (5%)

Query: 5   RCRESANSSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYP 64
           RC E A SSSF R VYSEIEE+GWE + RL  DL F SF ++DKKGR H +EIQL+++YP
Sbjct: 13  RCEELAKSSSFYRKVYSEIEEIGWEPIRRLGGDLTFFSFHILDKKGRAHNLEIQLNRDYP 72

Query: 65  RSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNP 124
            SPPS+SADVPY+F L+WS  SRLKD++ QF++HL+ LQE W++LD IDKSL V+D+K P
Sbjct: 73  NSPPSVSADVPYMFTLEWSTSSRLKDVMHQFQKHLDYLQEFWSVLDNIDKSLCVVDVKQP 132

Query: 125 SRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDP---MVNSLRKTWQRNSKRCAS 181
           +RA+  R+I+ G +CII++ I   DP SLPE RF+G  P    +N+L   W+RN KR ++
Sbjct: 133 ARASAIRRIDAGNDCIIIVHIDFKDPKSLPESRFIGPVPSATHMNNLHMLWRRNCKRWSN 192

Query: 182 SSSF-----CLLRV----PIGLRL 196
             SF     C+L      P+GL++
Sbjct: 193 ERSFPENLECILGTELPKPLGLQV 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582393|ref|XP_002531985.1| Ubiquitin ligase protein FANCL, putative [Ricinus communis] gi|223528344|gb|EEF30384.1| Ubiquitin ligase protein FANCL, putative [Ricinus communis]

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 86/148 (58%), Positives = 110/148 (74%)

Query: 38  LKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFRE 97
           L F+     DKKGRVH +E+QLD+ +PR PPS+SADVPYIF+++WS  SRLKDL+QQF E
Sbjct: 10  LTFVYLSSRDKKGRVHILEVQLDETHPRHPPSVSADVPYIFSVRWSMNSRLKDLMQQFHE 69

Query: 98  HLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECR 157
           HLEKLQE W+ L++ID SL V+D+   S A   RQI++G +C IML I+  DP SLPECR
Sbjct: 70  HLEKLQEFWSTLEDIDNSLCVVDIHKSSHAISFRQIDIGNDCFIMLFINTKDPRSLPECR 129

Query: 158 FMGSDPMVNSLRKTWQRNSKRCASSSSF 185
           F+GS P+ +SLRK WQRN K+     +F
Sbjct: 130 FLGSGPVAHSLRKRWQRNCKQWMQDKTF 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212721800|ref|NP_001131416.1| uncharacterized protein LOC100192745 [Zea mays] gi|194691460|gb|ACF79814.1| unknown [Zea mays] gi|413933185|gb|AFW67736.1| ubiquitin ligase protein FANCL [Zea mays]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 121/174 (69%), Gaps = 1/174 (0%)

Query: 13  SSFSRSVYSEIEEVGWEHLVRLSED-LKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSIS 71
           ++F  SV+++IEE+GW+ LV  + D +  L+FRV+D+ GR+H +EI L   YP SPPSIS
Sbjct: 44  AAFYSSVFAQIEEIGWKQLVSATGDGVSCLTFRVVDEPGRMHLLEITLPMGYPESPPSIS 103

Query: 72  ADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCR 131
           ADVPY+  + WS+ SRLKD++ QF+ HL+ LQE WN +DEIDK LW++D   PS A   R
Sbjct: 104 ADVPYLPKIHWSKNSRLKDVICQFQAHLKILQEFWNTMDEIDKVLWIVDPTKPSYAMSHR 163

Query: 132 QINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSF 185
           +I LG +C I+L +    P+SLPECRF+G+D  ++ L   W++N K+  +   F
Sbjct: 164 RIALGDDCYILLQVDARKPNSLPECRFLGTDGKLDQLIINWRKNRKKWDTKKKF 217

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195620462|gb|ACG32061.1| ubiquitin ligase protein FANCL [Zea mays]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 120/173 (69%), Gaps = 1/173 (0%)

Query: 14  SFSRSVYSEIEEVGWEHLVRLSED-LKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISA 72
           SF  SV+++IEE+GW+ LV  + D +  L+FRV+D+ GR+H +EI L   YP SPPSISA
Sbjct: 45  SFYSSVFAQIEEIGWKQLVSATGDGVSCLTFRVVDEPGRMHLLEITLPMGYPESPPSISA 104

Query: 73  DVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQ 132
           DVPY+  + WS+ SRLKD++ QF+ HL+ LQE WN +DEIDK LW++D   PS A   R+
Sbjct: 105 DVPYLPKINWSKNSRLKDVICQFQAHLKILQEFWNTMDEIDKVLWIVDPTKPSYAMSHRR 164

Query: 133 INLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSF 185
           I LG +C I+L +    P+SLPECRF+G+D  ++ L   W++N K+  +   F
Sbjct: 165 IALGDDCYILLQVDARKPNSLPECRFLGTDGKLDQLIINWRKNRKKWDTKKKF 217

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357115395|ref|XP_003559474.1| PREDICTED: E3 ubiquitin-protein ligase FANCL-like [Brachypodium distachyon]

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 118/173 (68%), Gaps = 2/173 (1%)

Query: 15  FSRSVYSEIEEVGWEHLVRLSED--LKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISA 72
           F  SV+++IEEVGW  LV  + D  +  L+FRV+D++GR H +E+ L  NYP  PPSISA
Sbjct: 36  FYSSVFAQIEEVGWGRLVTATGDDGVSCLAFRVMDEQGRQHLLEVTLPMNYPACPPSISA 95

Query: 73  DVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQ 132
           DVP +  L+WS+ SRLKD++ QF+EHL+ LQ  W  +D+IDK+LWV+D   PS A   R+
Sbjct: 96  DVPCLPKLQWSKLSRLKDVVCQFQEHLKNLQNYWCTMDDIDKALWVVDPTKPSYAMSHRR 155

Query: 133 INLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSF 185
           I LG +C I+L +    PSSLPECRF+G+D  +  L K W++N KR  +   F
Sbjct: 156 IALGDDCYILLHVDAHKPSSLPECRFLGTDGKLERLIKNWRKNRKRWTADKKF 208

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242033117|ref|XP_002463953.1| hypothetical protein SORBIDRAFT_01g009490 [Sorghum bicolor] gi|241917807|gb|EER90951.1| hypothetical protein SORBIDRAFT_01g009490 [Sorghum bicolor]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 115/166 (69%), Gaps = 2/166 (1%)

Query: 22  EIEEVGWEHLVRLSED--LKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFN 79
           +IEE+GWE +V  + D  +  L+FRV+D+ GR+H +EI L   YP  PPSISAD+PY+  
Sbjct: 91  QIEEIGWEQVVSATGDDGVSCLTFRVVDEAGRIHLLEITLPMGYPECPPSISADIPYLPK 150

Query: 80  LKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNC 139
           ++WS+ SRLKD+L QF+ HL+ LQE W+ +DEIDK LW++D   PS A   R+I+LG +C
Sbjct: 151 IQWSKSSRLKDVLCQFQAHLKILQEFWSTMDEIDKVLWIVDPTKPSYAMSHRRISLGDDC 210

Query: 140 IIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSF 185
            I+L +    P+SLPECRF+G+D  ++ L   W++N K+  +   F
Sbjct: 211 YILLHVDARKPNSLPECRFLGTDDKLDQLIINWRKNRKKWDAKKKF 256

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115455075|ref|NP_001051138.1| Os03g0726900 [Oryza sativa Japonica Group] gi|41469280|gb|AAS07162.1| expressed protein (with alternative splicing) [Oryza sativa Japonica Group] gi|108710855|gb|ABF98650.1| Ubiquitin ligase protein FANCL, putative, expressed [Oryza sativa Japonica Group] gi|113549609|dbj|BAF13052.1| Os03g0726900 [Oryza sativa Japonica Group] gi|215704189|dbj|BAG93029.1| unnamed protein product [Oryza sativa Japonica Group] gi|222625718|gb|EEE59850.1| hypothetical protein OsJ_12426 [Oryza sativa Japonica Group]

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 120/175 (68%), Gaps = 2/175 (1%)

Query: 13  SSFSRSVYSEIEEVGWEHLVRLSED--LKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSI 70
           ++F  +V+++IEEVGWE LV    D  +  L FR++D +GR H +EI L  NYP SPP +
Sbjct: 31  AAFYSAVFAQIEEVGWERLVSGKGDGGVSCLVFRILDDQGRNHLLEITLPMNYPSSPPCL 90

Query: 71  SADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVC 130
            ADVPY+  L+WS+ SRLKD++ QF+EHL+ LQ+ W+I+D+IDK LWV+D   P+ A   
Sbjct: 91  VADVPYLPELQWSKGSRLKDVVCQFQEHLKILQDYWSIMDDIDKVLWVVDPTKPTFAMSH 150

Query: 131 RQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSF 185
           R+I LG +C ++L +++  P SLPE RF+G+D  ++ L   W++  K+ ++   F
Sbjct: 151 RRIALGDDCYLLLHVNVRKPRSLPEVRFLGTDGKLDRLITNWRKYCKKWSADKKF 205

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218193683|gb|EEC76110.1| hypothetical protein OsI_13372 [Oryza sativa Indica Group]

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 118/175 (67%), Gaps = 2/175 (1%)

Query: 13  SSFSRSVYSEIEEVGWEHLVRLSED--LKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSI 70
           ++F  +V+++IEEVGWE LV    D  +  L FR++D +GR H +EI L  NYP SPP +
Sbjct: 31  AAFYSAVFAQIEEVGWERLVSGKGDGGVSCLVFRILDDQGRNHLLEITLPMNYPSSPPCL 90

Query: 71  SADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVC 130
            ADVPY+  L+WS+ SRLKD++ QF+EHL+ LQ+ W+I+D+IDK LWV+D   P+ A   
Sbjct: 91  VADVPYLPELQWSKGSRLKDVVCQFQEHLKILQDYWSIMDDIDKVLWVVDPTKPTFAMSH 150

Query: 131 RQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSF 185
           R I LG +C ++L ++   P SLPE RF+G+D  ++ L   W++  K+ ++   F
Sbjct: 151 RCIALGDDCYLLLHVNARKPRSLPEVRFLGTDGKLDRLITNWRKYCKKWSADKKF 205

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2169995	300	AT5G65740 [Arabidopsis thalian	0.830	0.62	0.497	1.6e-47
UNIPROTKB|Q3MUH5	373	FANCL "Uncharacterized protein	0.669	0.402	0.34	1.4e-23
ZFIN|ZDB-GENE-040426-1045	371	fancl "Fanconi anemia, complem	0.669	0.404	0.326	6.1e-23
MGI|MGI:1914280	375	Fancl "Fanconi anemia, complem	0.638	0.381	0.328	1.9e-21
UNIPROTKB|Q2TBN8	374	FANCL "Fanconi anemia, complem	0.665	0.398	0.333	2.5e-21
UNIPROTKB|J9P6M7	390	FANCL "Uncharacterized protein	0.669	0.384	0.326	3.6e-21
UNIPROTKB|C9JZA9	301	FANCL "E3 ubiquitin-protein li	0.669	0.498	0.326	4.9e-21
UNIPROTKB|Q9NW38	375	FANCL "E3 ubiquitin-protein li	0.669	0.4	0.326	5.9e-21
RGD|1311427	375	Fancl "Fanconi anemia, complem	0.638	0.381	0.314	1e-20
UNIPROTKB|F1SQL5	330	LOC100526164 "Uncharacterized	0.611	0.415	0.333	2.1e-20

TAIR|locus:2169995 AT5G65740 [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 98/197 (49%), Positives = 135/197 (68%)

Query:    25 EVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSR 84
             E+GWE + RL  DL F SF ++DKKGR H +EIQL+++YP SPPS+SADVPY+F L+WS 
Sbjct:    33 EIGWEPIRRLGGDLTFFSFHILDKKGRAHNLEIQLNRDYPNSPPSVSADVPYMFTLEWST 92

Query:    85 KSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLS 144
              SRLKD++ QF++HL+ LQE W++LD IDKSL V+D+K P+RA+  R+I+ G +CII++ 
Sbjct:    93 SSRLKDVMHQFQKHLDYLQEFWSVLDNIDKSLCVVDVKQPARASAIRRIDAGNDCIIIVH 152

Query:   145 IHIDDPSSLPECRFMGSDPM---VNSLRKTWQRNSKRCASSSSF-----CLL--RVPIGL 194
             I   DP SLPE RF+G  P    +N+L   W+RN KR ++  SF     C+L   +P  L
Sbjct:   153 IDFKDPKSLPESRFIGPVPSATHMNNLHMLWRRNCKRWSNERSFPENLECILGTELPKPL 212

Query:   195 RLRCRLSVTEGECR-CY 210
              L+      + EC  CY
Sbjct:   213 GLQVEDDQQQVECGICY 229

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q3MUH5 FANCL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 51/150 (34%), Positives = 78/150 (52%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW  +  +   L  +  +  D +GR H + ++L+  YP  PP    D P  F + W  +
Sbjct:   119 LGWNKVAYVDTGLTTVKLKAEDSRGRQHLITLKLNAKYPTEPPDCVVDFPVQFAISWMPQ 178

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
               L D+  QF   LE L+E W+ +DEID   WV++ +NP+R    R+I +G N  + + +
Sbjct:   179 DSLIDIHNQFLAALESLKEFWDTMDEIDGKTWVLEPENPARCATSRRIAIGNNVSVNIEV 238

Query:   146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRN 175
                 P  LPEC F+G+D  VN LR     N
Sbjct:   239 DPRHPKMLPECYFLGADHAVNPLRTKLNNN 268

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0007276 "gamete generation" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=ISS;TAS

GO:0006513 "protein monoubiquitination" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

ZFIN|ZDB-GENE-040426-1045 fancl "Fanconi anemia, complementation group L" [Danio rerio (taxid:7955)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 49/150 (32%), Positives = 84/150 (56%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW+ L+ +  + + L  +  D  GR H + ++L   YP   P  SAD+P    + W+ +
Sbjct:   117 LGWDKLLFIDAEFRTLQLKAEDSAGRQHAITVKLKSKYPAEAPEFSADLPIPLVITWTSQ 176

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
             S L ++  QF  ++E L + W++LDEID+  WV++ + P++A+  R+I +G N  I + I
Sbjct:   177 STLANVHSQFLLNVEALSDFWSVLDEIDEKTWVLEPEKPTKADSTRRIAIGNNVSIKVQI 236

Query:   146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRN 175
                 P  LPEC  +G++ +V  LR     N
Sbjct:   237 DPRHPKMLPECCLLGAEHVVTPLRNKLNAN 266

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISS

GO:0006281 "DNA repair" evidence=IEA

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048599 "oocyte development" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1914280 Fancl "Fanconi anemia, complementation group L" [Mus musculus (taxid:10090)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 47/143 (32%), Positives = 76/143 (53%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW+ L  +      +  +  D  GR H + ++L   YP  PP    D P  F++ W+ +
Sbjct:   121 IGWDKLACVESSFSTIKLKADDASGRKHLITVKLKAKYPVEPPDCVVDFPVPFSVSWTPQ 180

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
             S L D+  QF   LE L+  W+++DEID+  WV++ + P R+   R+I LG N  I + +
Sbjct:   181 SSLVDVYSQFLVALETLKVFWDVMDEIDEKTWVLEPEKPPRSATARRIALGKNVSIAIEV 240

Query:   146 HIDDPSSLPECRFMGSDPMVNSL 168
                 P+ LPE  F+G+D +   L
Sbjct:   241 DPRHPTMLPEFCFLGADHVTKPL 263

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0006281 "DNA repair" evidence=ISO

GO:0006513 "protein monoubiquitination" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007276 "gamete generation" evidence=IMP

GO:0008152 "metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0016874 "ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0043240 "Fanconi anaemia nuclear complex" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q2TBN8 FANCL "Fanconi anemia, complementation group L" [Bos taurus (taxid:9913)]

 Score = 250 (93.1 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 50/150 (33%), Positives = 80/150 (53%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW+ LV +      +  +  D  GR H + ++L   YP   P    D P  F++ W+ +
Sbjct:   121 LGWDKLVFVDPCFSTIKLKA-DVSGREHLITVKLKAKYPAESPDCVVDFPVPFSVSWTPQ 179

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
             S L  +  QF   LE L+  W+++DEID+  WV++ + P+R+   R+I LG N  I + +
Sbjct:   180 SSLISIYTQFLAALESLKTFWDVMDEIDEKTWVLEPEKPTRSATARRIVLGNNVSINIEV 239

Query:   146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRN 175
                 P+ LPEC F+G+D +V  L     RN
Sbjct:   240 DPRHPTMLPECCFLGADHVVKPLGIRLSRN 269

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0007276 "gamete generation" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9P6M7 FANCL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 250 (93.1 bits), Expect = 3.6e-21, P = 3.6e-21
 Identities = 49/150 (32%), Positives = 79/150 (52%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW+ LV +   L  +  +  D  GR H + ++L   YP   P    D P  F++ W+ +
Sbjct:   144 LGWDKLVYVDTCLSTIKLKAEDASGRKHLITLKLKTKYPTESPDCVVDFPVSFSVSWTPQ 203

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
             S L  +  QF   LE L+  W+++DEID+  WV++ + P+R+   R+I L     I + +
Sbjct:   204 SSLISIYSQFLAALESLKAFWDVMDEIDEKTWVLEPEKPTRSATTRRIALENRASINIEV 263

Query:   146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRN 175
                 P+ LPEC F+G+D +V  L     RN
Sbjct:   264 DPRHPTMLPECCFLGADHVVKPLGIKLSRN 293

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|C9JZA9 FANCL "E3 ubiquitin-protein ligase FANCL" [Homo sapiens (taxid:9606)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 49/150 (32%), Positives = 76/150 (50%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW+ LV        +  +  D  GR H + ++L   YP   P    D P  F   W+ +
Sbjct:    62 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ 121

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
             S L  +  QF   +E L+  W+++DEID+  WV++ + P R+   R+I LG N  I + +
Sbjct:   122 SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV 181

Query:   146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRN 175
                 P+ LPEC F+G+D +V  L     RN
Sbjct:   182 DPRHPTMLPECFFLGADHVVKPLGIKLSRN 211

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA

UNIPROTKB|Q9NW38 FANCL "E3 ubiquitin-protein ligase FANCL" [Homo sapiens (taxid:9606)]

 Score = 247 (92.0 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 49/150 (32%), Positives = 76/150 (50%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW+ LV        +  +  D  GR H + ++L   YP   P    D P  F   W+ +
Sbjct:   121 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ 180

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
             S L  +  QF   +E L+  W+++DEID+  WV++ + P R+   R+I LG N  I + +
Sbjct:   181 SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV 240

Query:   146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRN 175
                 P+ LPEC F+G+D +V  L     RN
Sbjct:   241 DPRHPTMLPECFFLGADHVVKPLGIKLSRN 270

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0007276 "gamete generation" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA;TAS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0006281 "DNA repair" evidence=IMP;TAS

GO:0006513 "protein monoubiquitination" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

RGD|1311427 Fancl "Fanconi anemia, complementation group L" [Rattus norvegicus (taxid:10116)]

 Score = 245 (91.3 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 45/143 (31%), Positives = 77/143 (53%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW+ L  +      +  +  D  GR H + ++L   YP  PP    D P  F++ W+ +
Sbjct:   121 IGWDKLACVDTSFTTIKLKADDASGRKHLITVKLKAKYPVEPPDCLVDFPIPFSVSWTPQ 180

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
             S L ++  QF   LE L+  W+++DEID+  WV++ + P R+   R+I LG++  I + +
Sbjct:   181 SSLVNVYSQFSAALETLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGHDVSINIEV 240

Query:   146 HIDDPSSLPECRFMGSDPMVNSL 168
                 P+ LPE  F+G+D +   L
Sbjct:   241 DPRHPTMLPEFCFLGADHVTKPL 263

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005635 "nuclear envelope" evidence=IEA;ISO

GO:0006281 "DNA repair" evidence=IEA;ISO

GO:0006513 "protein monoubiquitination" evidence=IEA;ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007276 "gamete generation" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0042127 "regulation of cell proliferation" evidence=IEA;ISO

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA;ISO

UNIPROTKB|F1SQL5 LOC100526164 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 46/138 (33%), Positives = 77/138 (55%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYP-RSPPSISADVPYIFNLKWSR 84
             +GW+ LV +      +  +  D  GR H + ++L   YP +    +  DV   F++ W+ 
Sbjct:    72 LGWDKLVHVDTCFSTIKLKAEDASGREHLITVKLKAKYPSKETKVVFLDVXVSFSVSWTP 131

Query:    85 KSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLS 144
             +S L  +  QF E LE L+  W+++DEID+  WV++ + P+R+   R+I LG N  I + 
Sbjct:   132 QSSLISIHSQFLEALESLKAFWDVMDEIDEKTWVLEPEKPTRSATARRIALGNNSSINIE 191

Query:   145 IHIDDPSSLPECRFMGSD 162
             +    P+ LPEC F+G+D
Sbjct:   192 VDPRHPTMLPECCFLGAD 209

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
pfam09765	292	pfam09765, WD-3, WD-repeat region	4e-24

>gnl|CDD|192370 pfam09765, WD-3, WD-repeat region

 Score = 96.7 bits (241), Expect = 4e-24
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 13/167 (7%)

Query: 12  SSSFSRSVYSEIEEVGWEHLVRLSED-----LKFLSFRVIDKKGRVHCMEIQLDKNYPRS 66
              +  ++ +E+E +GW+ L  +  D     +K  +F    +    H + ++L   YP  
Sbjct: 98  PPQYYSNLITELEALGWDKLCYVQFDSSFSTIKLSAFDSFRQ----HYLTLKLKSKYPFE 153

Query: 67  PPSISADVPYIFNLKW-SRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPS 125
            P  S   P  F+      +S L+D L QF + LE L+E ++ LDEID+  WV++ + P+
Sbjct: 154 VPDHSLPDPVPFSESLTKSQSSLQDHLNQFLQLLESLEEFYDNLDEIDELCWVLEPEKPT 213

Query: 126 RANVCRQINLGYNCIIMLSIHIDDPSSLPEC---RFMGSDPMVNSLR 169
                R+I LG N  + + +    P  LP      F+G   +V  LR
Sbjct: 214 TKATTRRIALGNNVSLKVEVDPRHPFMLPASMFLGFIGPTHVVAPLR 260

This entry is of a region of approximately 100 residues containing three WD repeats and six cysteine residues possibly as three cystine-bridges. These regions are contained within the Fancl protein in humans which is the putative E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits of the Fanconi anaemia gene products form a multisubunit nuclear complex which is required for mono-ubiquitination of a downstream FA protein, FANCD2. The WD repeats are required for interaction with other subunits of the FA complex. Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
PF09765	291	WD-3: WD-repeat region; InterPro: IPR019162 This e	100.0
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	96.39
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	96.09
PLN00172	147	ubiquitin conjugating enzyme; Provisional	95.99
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	95.85
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	95.61
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	95.4
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	94.78
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	90.38
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	88.96
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	83.29
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	81.74
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	80.08

>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL

Probab=100.00  E-value=2.7e-65  Score=461.56  Aligned_cols=181  Identities=39%  Similarity=0.778  Sum_probs=157.0

Q ss_pred             CchhHHHHHHHHHHhccceeeee--cCCcceEEEEEEeCCCCEEEEEEEecCCCCCCCCceeecCCCceecccCc-cCcH
Q 027371           12 SSSFSRSVYSEIEEVGWEHLVRL--SEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSR-KSRL   88 (224)
Q Consensus        12 ~~~fys~li~Eie~iGW~kl~~i--d~~ls~i~l~~~D~~gR~H~l~v~l~~~yP~~~P~~~~dlP~~f~~~W~~-~ssL   88 (224)
                      +++||++|++||++|||++++++  |++|++|+|+++|++ |+|+|+|+++++||.++|+|++|+|++|.+.|++ +|+|
T Consensus        97 p~~~ys~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D~~-R~H~l~l~l~~~yp~~~p~~~~~~P~~~~~~w~~~~ssL  175 (291)
T PF09765_consen   97 PPQYYSNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFDSS-RQHYLELKLPSNYPFEPPSCSLDLPIPFSLSWSPSQSSL  175 (291)
T ss_dssp             --GGC-CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEETTC-EEEEEEEETTTTTTTSEEEECS-TTS-HHHHHHCHT-SH
T ss_pred             CcHHHHHHHHHHHHhccccceEEecCCCccEEEEEEEcCC-ceEEEEEEECCCCCCCCceeeCCCCcchhhhhcccccCH
Confidence            49999999999999999999999  999999999999999 9999999999999999999999999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEEcCCCCCCCCceeeeC---Cchhh
Q 027371           89 KDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMG---SDPMV  165 (224)
Q Consensus        89 ~~v~~qF~~~Le~lq~FWd~LdeID~~~wVLEP~~Ptrs~t~RRIaLg~~vsl~ieVdP~~P~~lPe~~FlG---~~~~V  165 (224)
                      +++++||+++||+||+|||+|||||++||||||++|+||+++||||||+||||+|+|||+||+|+|+|+|+|   |+++|
T Consensus       176 ~~v~~qF~~~le~lq~fw~~ld~iD~~~~VleP~~p~~~~~~RrI~l~~~~sl~i~vdP~~P~~~p~~~~l~f~G~~~~v  255 (291)
T PF09765_consen  176 KDVVQQFQEALESLQEFWDVLDEIDENCWVLEPEKPTRSDTYRRIALGNNVSLKIEVDPRHPRMLPECRFLGFIGPDHEV  255 (291)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHS-EEESSS--TT--EEEEEEETTEEEEEEE-TTSTTSTTCCEEECEESSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcceecCCCCCCccccEEEEEECCceEEEEEEcCCCCccCcccccccccCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999977555   99999


Q ss_pred             HHHHHHHhhcccCCCCCCCcee-------e-eccch
Q 027371          166 NSLRKTWQRNSKRCASSSSFCL-------L-RVPIG  193 (224)
Q Consensus       166 ~~Lr~~l~~n~~~Wd~~~sl~e-------~-~fP~~  193 (224)
                      ++||++|++|+++||+++++++       + +||++
T Consensus       256 ~~lr~~~~~n~~~Wd~~~~~~~NL~~il~~~~fP~p  291 (291)
T PF09765_consen  256 NPLREKLNDNLHNWDPDKSLLENLERILEICEFPSP  291 (291)
T ss_dssp             HHHHHHHHHHHHC--TTS-HHHHHHHHCT-SS----
T ss_pred             HHHHHHHhcchhhcCCCCCHHHHHHHHhCcccCCCC
Confidence            9999999999999999999988       5 99974

FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-39  Score=273.86  Aligned_cols=173  Identities=24%  Similarity=0.330  Sum_probs=154.5

Q ss_pred             EeCCCCEEEEEEEecCCCCCCCCceeecCCCceecccCccCcHHHHHHHHHHHHHHHHHHHHhHHhhhccceeecCCCCC
Q 027371           46 IDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPS  125 (224)
Q Consensus        46 ~D~~gR~H~l~v~l~~~yP~~~P~~~~dlP~~f~~~W~~~ssL~~v~~qF~~~Le~lq~FWd~LdeID~~~wVLEP~~Pt  125 (224)
                      .|.+||.|.+++.+..+||++.|.-.+|.|++|-+.|.|||++..||+||.+++|+++.||+.||++|++|||+||++|.
T Consensus         2 edaSG~~h~i~l~~ea~~pae~pd~fvd~pi~FCad~~pqs~~IsiYsqflaa~esiea~~~~ide~deKT~l~e~ekP~   81 (234)
T KOG3268|consen    2 EDASGECHGIELCEEAAKPAEFPDKFVDEPINFCADVGPQSCAISIYSQFLAAFESIEACNAPIDEGDEKTLLHELEKPA   81 (234)
T ss_pred             CCcccchhHHHHHHHhcCccccchhhhcccccceeecCCcceehHHHHHHHHHHHhHHhhcCcCccccccchhccccCCc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEEeCCceEEEEEEcCCCCCCCCceeeeCCchhhHHHHHHHhhcccCCCCCCCcee-------eeccchhhhhh
Q 027371          126 RANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSFCL-------LRVPIGLRLRC  198 (224)
Q Consensus       126 rs~t~RRIaLg~~vsl~ieVdP~~P~~lPe~~FlG~~~~V~~Lr~~l~~n~~~Wd~~~sl~e-------~~fP~~~~~~~  198 (224)
                      |+++.|||++||+|+|.|+|||+||.|||||.|+|+||++.|+.-+...|+++|||+.+.++       .-||-+.-+.-
T Consensus        82 RaaaaRRIa~GNd~~I~ieiD~k~PkmLPEcf~lgadhv~~P~gie~~~~i~L~dPe~~~led~kd~lE~df~a~a~Lek  161 (234)
T KOG3268|consen   82 RAAAARRIAAGNDCIIIIEIDFKDPKMLPECFELGADHVSFPEGIECILGIELPDPEGLQLEDDKDQLECDFCAAAFLEK  161 (234)
T ss_pred             hHHHHHHhhcCCceEEEEEecCCCCccchhhHhhccccccccccceEEeccccCCccccccccccceeeeCccHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999999987776       55665544321


Q ss_pred             hhccccCceeEEEeeccCCCCCC
Q 027371          199 RLSVTEGECRCYCFNKKKTSTLP  221 (224)
Q Consensus       199 ~~~~~~gec~~~c~~~~~~~~~~  221 (224)
                      +..  -|-|| |||-+..+.+.|
T Consensus       162 dd~--~~~cg-icyayqldGTip  181 (234)
T KOG3268|consen  162 DDE--LGACG-ICYAYQLDGTIP  181 (234)
T ss_pred             chh--hhccc-ceeeeecCCccc
Confidence            111  23444 566666666655

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=96.39  E-value=0.034  Score=44.78  Aligned_cols=83  Identities=18%  Similarity=0.368  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371           17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~----------   76 (224)
                      ++|.+|+.++.=+     .+.-.+.++....+.+.-.     .|....++|.++.+||.+||.+...-+.          
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~   81 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK   81 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence            5788888887432     2333344788888877644     3678889999999999999999864221          


Q ss_pred             ----ceecc-cCccCcHHHHHHHHHHHH
Q 027371           77 ----IFNLK-WSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ----~f~~~-W~~~ssL~~v~~qF~~~L   99 (224)
                          .+.-. |++..+|.+|+...+..+
T Consensus        82 icl~~l~~~~W~p~~~l~~il~~i~~~l  109 (141)
T cd00195          82 ICLSILKTHGWSPAYTLRTVLLSLQSLL  109 (141)
T ss_pred             CchhhcCCCCcCCcCcHHHHHHHHHHHH
Confidence                01113 998888988888776665

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=96.09  E-value=0.079  Score=42.50  Aligned_cols=82  Identities=21%  Similarity=0.392  Sum_probs=55.8

Q ss_pred             HHHHHHHHhccc-----eeeeec-CCcceEEEEEEe-C----CCCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371           18 SVYSEIEEVGWE-----HLVRLS-EDLKFLSFRVID-K----KGRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (224)
Q Consensus        18 ~li~Eie~iGW~-----kl~~id-~~ls~i~l~~~D-~----~gR~H~l~v~l~~~yP~~~P~~~~dlP~----------   76 (224)
                      ||.+|+.++.=+     .+.-.+ .++....+.+.. .    .|....++|.+|.+||.++|.+...-|.          
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~   80 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR   80 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence            577888766322     333333 479999999876 1    3889999999999999999998755431          


Q ss_pred             ----ceec-ccCccCcHHHHHHHHHHHH
Q 027371           77 ----IFNL-KWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ----~f~~-~W~~~ssL~~v~~qF~~~L   99 (224)
                          .+.- .|++..+|.+|+..++..|
T Consensus        81 icl~~l~~~~W~p~~~i~~il~~i~~ll  108 (140)
T PF00179_consen   81 ICLDILNPESWSPSYTIESILLSIQSLL  108 (140)
T ss_dssp             BGHGGGTTTTC-TTSHHHHHHHHHHHHH
T ss_pred             chhhhhhcccCCcccccccHHHHHHHHH
Confidence                1111 3999889988888777666

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=95.99  E-value=0.12  Score=42.66  Aligned_cols=84  Identities=18%  Similarity=0.284  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---------c
Q 027371           17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---------I   77 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~---------~   77 (224)
                      ++|.+|+.++-=+     .+.-.+.|+....+.+....     |....++|.++.+||.+||.+..--+.         .
T Consensus         4 ~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~   83 (147)
T PLN00172          4 KRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGS   83 (147)
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCE
Confidence            5888999888422     23334567888888877332     678899999999999999988754431         0


Q ss_pred             -----eecccCccCcHHHHHHHHHHHHH
Q 027371           78 -----FNLKWSRKSRLKDLLQQFREHLE  100 (224)
Q Consensus        78 -----f~~~W~~~ssL~~v~~qF~~~Le  100 (224)
                           +.-.|++..+|.+|+...+..|.
T Consensus        84 iCl~il~~~W~p~~ti~~il~~i~~ll~  111 (147)
T PLN00172         84 ICLDILRDQWSPALTVSKVLLSISSLLT  111 (147)
T ss_pred             EEcccCcCCCCCcCcHHHHHHHHHHHHh
Confidence                 11269999999988877766663

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=95.85  E-value=0.12  Score=42.91  Aligned_cols=85  Identities=16%  Similarity=0.289  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      -++|.+|+.++.=+     .+.-.+.|+...++.+...     .|....++|.+|.+||.+||.+..-=+.         
T Consensus         4 ~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G   83 (152)
T PTZ00390          4 SKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG   83 (152)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCC
Confidence            36899999988421     3444567788888888743     2689999999999999999987643221         


Q ss_pred             ce-----ecccCccCcHHHHHHHHHHHHH
Q 027371           77 IF-----NLKWSRKSRLKDLLQQFREHLE  100 (224)
Q Consensus        77 ~f-----~~~W~~~ssL~~v~~qF~~~Le  100 (224)
                      .+     .=.|++..++.+|+..++..|.
T Consensus        84 ~iCl~iL~~~W~p~~ti~~iL~~i~~ll~  112 (152)
T PTZ00390         84 RICLDILKDKWSPALQIRTVLLSIQALLS  112 (152)
T ss_pred             eEECccCcccCCCCCcHHHHHHHHHHHHh
Confidence            01     1269999999888877777664

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=95.61  E-value=0.11  Score=41.91  Aligned_cols=82  Identities=18%  Similarity=0.333  Sum_probs=58.7

Q ss_pred             HHHHHHHHhccce---e-ee--ecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371           18 SVYSEIEEVGWEH---L-VR--LSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (224)
Q Consensus        18 ~li~Eie~iGW~k---l-~~--id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~----------   76 (224)
                      +|.+|+.++--+.   + +.  -++++...++.+...     .|....++|.++.+||.++|.|...-|.          
T Consensus         2 Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~   81 (145)
T smart00212        2 RLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGE   81 (145)
T ss_pred             hHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCC
Confidence            6777887765331   1 12  234788888888742     3678899999999999999999876661          


Q ss_pred             ---c-ee-cccCccCcHHHHHHHHHHHH
Q 027371           77 ---I-FN-LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ---~-f~-~~W~~~ssL~~v~~qF~~~L   99 (224)
                         . +. -.|++..+|.+++...+..+
T Consensus        82 icl~~l~~~~W~p~~~l~~il~~i~~~l  109 (145)
T smart00212       82 ICLDILKQEKWSPATTLETVLLSIQSLL  109 (145)
T ss_pred             EehhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence               1 11 26998899999888877766

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.40  E-value=0.15  Score=42.98  Aligned_cols=85  Identities=15%  Similarity=0.337  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHhcccee-----eeecC-CcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-------
Q 027371           15 FSRSVYSEIEEVGWEHL-----VRLSE-DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-------   76 (224)
Q Consensus        15 fys~li~Eie~iGW~kl-----~~id~-~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~-------   76 (224)
                      =.++|.+|++.+.-+..     .-.+. ++.+-+..+..-.     |+.-.++|++|.+||.+||.+...=+.       
T Consensus         6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~   85 (153)
T COG5078           6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP   85 (153)
T ss_pred             HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence            46799999999987641     11233 6777777776543     899999999999999999988755441       


Q ss_pred             -------ceecccCccCcHHHHHHHHHHHH
Q 027371           77 -------IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -------~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                             ++.-.|+|.-+|..|+...+..|
T Consensus        86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL  115 (153)
T COG5078          86 SGNVCLDILKDRWSPVYTLETILLSLQSLL  115 (153)
T ss_pred             CCCChhHHHhCCCCccccHHHHHHHHHHHH
Confidence                   12238999888888777666665

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.78  E-value=0.21  Score=41.91  Aligned_cols=83  Identities=18%  Similarity=0.353  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhccceeeee-----cCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371           17 RSVYSEIEEVGWEHLVRL-----SEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (224)
Q Consensus        17 s~li~Eie~iGW~kl~~i-----d~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~----------   76 (224)
                      ++|++|+..+.-+....+     ++++.+.+.++..-.     |-+..|.|.+|..||+.||.+..-=+.          
T Consensus         4 ~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~   83 (148)
T KOG0417|consen    4 KRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGR   83 (148)
T ss_pred             HHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcccc
Confidence            389999998887755433     445666777776543     789999999999999999977654441          


Q ss_pred             ----ceecccCccCcHHHHHHHHHHHH
Q 027371           77 ----IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ----~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                          ++.-+|+|..+|..|+...+..|
T Consensus        84 IclDILk~~WsPAl~i~~VllsI~sLL  110 (148)
T KOG0417|consen   84 ICLDILKDQWSPALTISKVLLSICSLL  110 (148)
T ss_pred             chHHhhhccCChhhHHHHHHHHHHHHh
Confidence                23348999999999988888776

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=90.38  E-value=3.1  Score=34.67  Aligned_cols=86  Identities=14%  Similarity=0.246  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHhccc----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCCcee-------
Q 027371           16 SRSVYSEIEEVGWE----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIFN-------   79 (224)
Q Consensus        16 ys~li~Eie~iGW~----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~~f~-------   79 (224)
                      -.+|.+|+-++.-+    -.+.+..+++.-.+.+..+.     |-...|-++++..||.+.|.+...=|.+..       
T Consensus        17 t~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNG   96 (161)
T KOG0427|consen   17 TNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNG   96 (161)
T ss_pred             HHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCC
Confidence            45788998887655    34668888999888888775     467889999999999999977644442221       


Q ss_pred             --------cccCccCcHHHHHHHHHHHHHH
Q 027371           80 --------LKWSRKSRLKDLLQQFREHLEK  101 (224)
Q Consensus        80 --------~~W~~~ssL~~v~~qF~~~Le~  101 (224)
                              =.|+|.-++..|+--.+.+|.+
T Consensus        97 HICL~iL~d~WsPAmsv~SvClSIlSMLSS  126 (161)
T KOG0427|consen   97 HICLDILYDSWSPAMSVQSVCLSILSMLSS  126 (161)
T ss_pred             eEEEEeecccCCcchhhHHHHHHHHHHHcc
Confidence                    1899999999999888888754

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.96  E-value=3  Score=36.56  Aligned_cols=56  Identities=25%  Similarity=0.407  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHhccc--------eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCcee
Q 027371           16 SRSVYSEIEEVGWE--------HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSIS   71 (224)
Q Consensus        16 ys~li~Eie~iGW~--------kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~   71 (224)
                      ++++-+|..++-=+        ++.-++.+++.|+..+..--     |-...|.|++|.+||+.||.+.
T Consensus         5 ~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~   73 (200)
T KOG0418|consen    5 FKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVK   73 (200)
T ss_pred             HHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCcee
Confidence            46666776666544        46677889999999987653     6678999999999999999874

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=83.29  E-value=2.4  Score=33.98  Aligned_cols=45  Identities=31%  Similarity=0.505  Sum_probs=29.5

Q ss_pred             EEEEEecCCCCCCCCceeecCCCceec------------------ccCc-cCcHHHHHHHHHHH
Q 027371           54 CMEIQLDKNYPRSPPSISADVPYIFNL------------------KWSR-KSRLKDLLQQFREH   98 (224)
Q Consensus        54 ~l~v~l~~~yP~~~P~~~~dlP~~f~~------------------~W~~-~ssL~~v~~qF~~~   98 (224)
                      -+.|-++.+||.++|.|.++....-.+                  +|+. .|+|.++++...++
T Consensus        51 Pi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~  114 (121)
T PF05743_consen   51 PICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQNWNPPSSNLVDLVQELQAV  114 (121)
T ss_dssp             EEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT--TTTS-HHHHHHHHHHC
T ss_pred             eEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhccCCCCCCCHHHHHHHHHHH
Confidence            567788999999999999876532111                  8987 78888888776654

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.74  E-value=6.3  Score=34.15  Aligned_cols=54  Identities=19%  Similarity=0.482  Sum_probs=37.4

Q ss_pred             eEEEEEEeC----CCCEEEEEEEecCCCCCCCCceee--cC--C-----C-----ceecccCccCcHHHHHH
Q 027371           40 FLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISA--DV--P-----Y-----IFNLKWSRKSRLKDLLQ   93 (224)
Q Consensus        40 ~i~l~~~D~----~gR~H~l~v~l~~~yP~~~P~~~~--dl--P-----~-----~f~~~W~~~ssL~~v~~   93 (224)
                      .+++++.=.    +|+.-...++++..||++||.+.+  .+  |     -     ++.-.|.|..+|.+|+.
T Consensus        61 ~~elti~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~  132 (184)
T KOG0420|consen   61 EFELTITPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIY  132 (184)
T ss_pred             eEEEEEccCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHH
Confidence            366665532    378899999999999999997653  22  2     1     22338998888887653

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.08  E-value=11  Score=31.81  Aligned_cols=83  Identities=22%  Similarity=0.335  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhccce------eeeecCCcceEEEEEEeCC----CCEEEEEEEecCCCCCCCCcee---------------
Q 027371           17 RSVYSEIEEVGWEH------LVRLSEDLKFLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSIS---------------   71 (224)
Q Consensus        17 s~li~Eie~iGW~k------l~~id~~ls~i~l~~~D~~----gR~H~l~v~l~~~yP~~~P~~~---------------   71 (224)
                      ++|.+||+.+.=++      +...+.++-.-+..+.-.+    .-..-|+|.+|.+||+.||-+.               
T Consensus         5 ~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gq   84 (153)
T KOG0422|consen    5 RRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQ   84 (153)
T ss_pred             HHHHHHHHHHHhccHHHHhhhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCc
Confidence            56777887776443      3344444444444443322    3456799999999999999653               


Q ss_pred             ecCCCceecccCccCcHHHHHHHHHHHH
Q 027371           72 ADVPYIFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        72 ~dlP~~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                      +=||..-+-+|.|.+...+|++--...+
T Consensus        85 vClPiis~EnWkP~T~teqVlqaLi~li  112 (153)
T KOG0422|consen   85 VCLPIISAENWKPATRTEQVLQALIALI  112 (153)
T ss_pred             eeeeeeecccccCcccHHHHHHHHHHHh
Confidence            2356655669999999888876655554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
3zqs_A	186	Human Fancl Central Domain Length = 186		4e-22

>pdb|3ZQS|A Chain A, Human Fancl Central Domain Length = 186

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 76/150 (50%)
Query: 26  VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
           +GW+ LV        +  +  D  GR H + ++L   YP   P    D P  F   W+ +
Sbjct: 13  LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ 72
Query: 86  SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
           S L  +  QF   +E L+  W+++DEID+  WV++ + P R+   R+I LG N  I + +
Sbjct: 73  SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV 132
Query: 146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRN 175
               P+ LPEC F+G+D +V  L     RN
Sbjct: 133 DPRHPTMLPECFFLGADHVVKPLGIKLSRN 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	2e-57
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	2e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens} Length = 186

 Score =  179 bits (455), Expect = 2e-57
 Identities = 54/171 (31%), Positives = 83/171 (48%)

Query: 15  FSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADV 74
           F  S+  EI  +GW+ LV        +  +  D  GR H + ++L   YP   P    D 
Sbjct: 2   FYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDF 61

Query: 75  PYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQIN 134
           P  F   W+ +S L  +  QF   +E L+  W+++DEID+  WV++ + P R+   R+I 
Sbjct: 62  PVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIA 121

Query: 135 LGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSF 185
           LG N  I + +    P+ LPEC F+G+D +V  L     RN       +S 
Sbjct: 122 LGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSV 172

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score =  128 bits (321), Expect = 2e-35
 Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 4/180 (2%)

Query: 1   MEQSRCRESANSSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVI-DKKGRVHCMEIQL 59
           +   +            ++Y +I  +   +   L  D      R         H +E+++
Sbjct: 93  LPAQKAPTVPKELCREGNIYYDILALYKSNEYCLQVDEACSMIRFSEFTDFEQHYLELKI 152

Query: 60  DKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVI 119
                        D   +  +       L++ L  FR+ LE L+  ++   +ID+   V+
Sbjct: 153 PSLLLLDHSL--PDCVSLGEMLTKSAGNLEEALNLFRKLLEDLRPFYDNFMDIDELCHVL 210

Query: 120 DLKNPSRANVCRQINLGYNCIIMLSI-HIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKR 178
                S  +  R   L     + L+I       +    + +G    V  LR         
Sbjct: 211 QPSPISSKHKTRLFPLKDRVYLKLTIADPFACIASMSLKIIGPTEEVARLRHVLSDGLSN 270

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 46/250 (18%), Positives = 90/250 (36%), Gaps = 80/250 (32%)

Query: 15  FSRSVYSEIEEVGWEHLVRLSED---LKFLSFRVIDKKGRV--HCMEIQLDKNYP----- 64
             +S+ S+ EE+  +H++   +       L + ++ K+  +    +E  L  NY      
Sbjct: 41  MPKSILSK-EEI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 65  -----RSPPSISADVPYIFNLKWS-----RK---SRLKDLLQQFREHLEKLQEIWNILDE 111
                R P  ++       +  ++      K   SRL+    + R+ L +L+   N+L  
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVL-- 154

Query: 112 ID------KSLWVIDLKNPSRANVCRQ-------------INLGYNC------IIMLS-- 144
           ID      K+ WV         +VC               +NL  NC      + ML   
Sbjct: 155 IDGVLGSGKT-WVA-------LDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQKL 205

Query: 145 IHIDDPSSLPECRFMGSDPM-VNSLRKTWQRNSKRCASSSSF--CLL--------RVPIG 193
           ++  DP+         +  + ++S++       +R   S  +  CLL        +    
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQA----ELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 194 LRLRCRLSVT 203
             L C++ +T
Sbjct: 262 FNLSCKILLT 271

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	100.0
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	96.54
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	96.46
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	96.41
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	96.37
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	96.2
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	96.18
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	96.12
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	96.07
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	96.06
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	96.05
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	96.01
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	95.99
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	95.98
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	95.86
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	95.84
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	95.83
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	95.82
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	95.81
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	95.74
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	95.66
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	95.61
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	95.6
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	95.51
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	95.49
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	95.38
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	95.38
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	95.37
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	95.36
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	95.34
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	95.29
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	95.23
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	95.18
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	95.11
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	95.1
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	95.05
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	95.03
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	95.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	94.93
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	94.86
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	94.76
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	94.71
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	94.62
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	94.47
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	94.35
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	94.28
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	93.94
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	93.86
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	93.13
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	93.13
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	93.13
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	92.82
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	87.65
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	87.18
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	87.09
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	86.66
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	80.78

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-75  Score=496.28  Aligned_cols=178  Identities=31%  Similarity=0.620  Sum_probs=175.7

Q ss_pred             hhHHHHHHHHHHhccceeeeecCCcceEEEEEEeCCCCEEEEEEEecCCCCCCCCceeecCCCceecccCccCcHHHHHH
Q 027371           14 SFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQ   93 (224)
Q Consensus        14 ~fys~li~Eie~iGW~kl~~id~~ls~i~l~~~D~~gR~H~l~v~l~~~yP~~~P~~~~dlP~~f~~~W~~~ssL~~v~~   93 (224)
                      +||++|++||++|||+||+++|++|++|+|+++|++||+|.|+|+|+++||+++|+|++|||++|.++|++++||+++++
T Consensus         1 ~~y~~li~Ei~~iGW~~l~~id~~~~~i~l~~~D~~gR~H~l~v~l~~~yp~~~P~~~~DlP~~~~~~w~~~ssL~~v~~   80 (186)
T 3zqs_A            1 QFYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYS   80 (186)
T ss_dssp             CCSCSHHHHHHHHCGGGEEEECTTSSEEEEEEECTTSCEEEEEEECCTTTTTSCCEEECCCSSCCCCCCCTTCCHHHHHH
T ss_pred             ChHHHHHHHHHHhCCceeeeecCCccEEEEEEEeCCCCeEEEEEEECCCCCCCCCeeEEcCCCCcccccCCCccHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEEcCCCCCCCCceeeeCCchhhHHHHHHHh
Q 027371           94 QFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQ  173 (224)
Q Consensus        94 qF~~~Le~lq~FWd~LdeID~~~wVLEP~~Ptrs~t~RRIaLg~~vsl~ieVdP~~P~~lPe~~FlG~~~~V~~Lr~~l~  173 (224)
                      ||+++||+||+|||+||+||++||||||++|+||+++|||||||||||+|+|||+||+|+|+|+|+||+++|++||++|+
T Consensus        81 qF~~~Le~lq~Fwd~ldeID~~~wVleP~~Ptr~~~~RRIalg~~vsl~i~vdP~~P~~lPe~~FlG~~~~v~~lr~~~~  160 (186)
T 3zqs_A           81 QFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLS  160 (186)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHSCEEESSSCCTTCCEEEEEEETTEEEEEECCTTSTTSCCEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcceeccCCCCCccCcEEEEEECCCcEEEEEECCCCCCcCCceEEECChHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCCCcee-------eecc
Q 027371          174 RNSKRCASSSSFCL-------LRVP  191 (224)
Q Consensus       174 ~n~~~Wd~~~sl~e-------~~fP  191 (224)
                      +|+++||+++++++       ++||
T Consensus       161 ~nl~~Wd~~~~i~~NL~~il~i~~P  185 (186)
T 3zqs_A          161 RNIHLWDPENSVLQNLKDVLEIDFP  185 (186)
T ss_dssp             HHGGGCCTTSCHHHHHHHHHTCCCC
T ss_pred             hhHhhcCCCCCHHHHHHHHHCCcCC
Confidence            99999999999998       6766

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=100.00  E-value=6.9e-52  Score=380.43  Aligned_cols=199  Identities=18%  Similarity=0.224  Sum_probs=176.1

Q ss_pred             HHHHHHHHHhc--cceeeeecCCcceEEEEEEeCCCCEEEEEEEecCCCCCCCCceeecCCCceec---ccCccCcHHHH
Q 027371           17 RSVYSEIEEVG--WEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNL---KWSRKSRLKDL   91 (224)
Q Consensus        17 s~li~Eie~iG--W~kl~~id~~ls~i~l~~~D~~gR~H~l~v~l~~~yP~~~P~~~~dlP~~f~~---~W~~~ssL~~v   91 (224)
                      +.|+.||.+|.  -+..+++|.++++|+|..++. .|+|+|+++++   +  .-+++++||..+.+   --.+++||+++
T Consensus       109 ~~i~~~~~~l~~~~~~~l~~~~~~s~i~~~~f~~-~~~h~Lel~~~---~--~~v~~h~LP~~~~~~e~l~k~~ssL~~v  182 (381)
T 3k1l_B          109 GNIYYDILALYKSNEYCLQVDEACSMIRFSEFTD-FEQHYLELKIP---S--LLLLDHSLPDCVSLGEMLTKSAGNLEEA  182 (381)
T ss_dssp             CCHHHHHHHHHSCSSCEEEECGGGCEEEEEEETT-EEEEEEEEETT---T--CCEEEESSCTTSCHHHHHHHHCCSHHHH
T ss_pred             hhHHHHHHHhcCccceEEEecCCccEEEeccccC-ccceEEEEecC---c--eEEecccCCcchhHHHHhcCccccHHHH
Confidence            34668999998  458899999999999999955 99999999998   3  47999999966522   12458999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEE-cCCCCCCCCceeeeCCchhhHHHHH
Q 027371           92 LQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI-HIDDPSSLPECRFMGSDPMVNSLRK  170 (224)
Q Consensus        92 ~~qF~~~Le~lq~FWd~LdeID~~~wVLEP~~Ptrs~t~RRIaLg~~vsl~ieV-dP~~P~~lPe~~FlG~~~~V~~Lr~  170 (224)
                      ++||+++||+||+|||+||+||++||||||++|+|++++||||||+||||+|+| ||++|+|+|+|+|+||+++|++||+
T Consensus       183 ~~qF~~~LE~Lq~FWd~LdeID~~~wVLEP~kPtrs~t~RRIaLgn~vSl~IeV~DP~~Pr~lPe~~FlGpd~~V~~Lr~  262 (381)
T 3k1l_B          183 LNLFRKLLEDLRPFYDNFMDIDELCHVLQPSPISSKHKTRLFPLKDRVYLKLTIADPFACIASMSLKIIGPTEEVARLRH  262 (381)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHSCCCBSSSCCTTCCEEEEEEETTEEEEEEESCTTSTTTTEEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCceEEEEeCCCeEEEEEeCCCCCCCcCceeEEECChhHhHHHHH
Confidence            999999999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHhhcccCCCCCCCcee-------e-eccchhhhhhh----hccccCceeEEEeeccCC-CCCCC
Q 027371          171 TWQRNSKRCASSSSFCL-------L-RVPIGLRLRCR----LSVTEGECRCYCFNKKKT-STLPP  222 (224)
Q Consensus       171 ~l~~n~~~Wd~~~sl~e-------~-~fP~~~~~~~~----~~~~~gec~~~c~~~~~~-~~~~~  222 (224)
                      +|++|+++||++++|++       + +||++..+...    .+....||+ |||+...+ .++|.
T Consensus       263 ~l~~Nl~~Wd~d~si~eNL~~IL~i~~fP~p~~~~~~~~~e~ee~~~ECa-ICys~~l~~g~lPd  326 (381)
T 3k1l_B          263 VLSDGLSNWDSEMNIHKNLLRMFDLCYFPMPDWSDGPKLDEEDNEELRCN-ICFAYRLDGGEVPL  326 (381)
T ss_dssp             HHHHHHHTCCTTSCHHHHHHHHTTCSSCCCCCGGGCCSCTTCCCSCCSCS-SSCCSSCTTCCCCC
T ss_pred             HHhhhhhhcCccCCHHHHHHHHhCccccCCCcccccccccccccCCccCc-ccceeecCCCCCcc
Confidence            99999999999999999       4 99997776532    223456886 89998887 78883

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=96.54  E-value=0.014  Score=46.50  Aligned_cols=83  Identities=11%  Similarity=0.173  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhcccee--e-----eecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCCc---ee--
Q 027371           17 RSVYSEIEEVGWEHL--V-----RLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYI---FN--   79 (224)
Q Consensus        17 s~li~Eie~iGW~kl--~-----~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~~---f~--   79 (224)
                      .+|.+|+.++.-+..  +     -.+.|+...+..+....     |....++|.+|.+||.+||.+...=|.-   .+  
T Consensus        25 ~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~  104 (136)
T 2a7l_A           25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVY  104 (136)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCC
Confidence            899999999853311  1     23567888888887443     5899999999999999999987544431   11  


Q ss_pred             -----------cccCccCcHHHHHHHHHHHH
Q 027371           80 -----------LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        80 -----------~~W~~~ssL~~v~~qF~~~L   99 (224)
                                 -.|+|..++..|+...+..|
T Consensus       105 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL  135 (136)
T 2a7l_A          105 SNGHICLSILTEDWSPALSVQSVCLSIISML  135 (136)
T ss_dssp             TTCBBCCGGGTTTCCTTSCHHHHHHHHHHHT
T ss_pred             CCCeEEchhcCCCCCCCCcHHHHHHHHHHHh
Confidence                       17999989998888777654

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=96.46  E-value=0.048  Score=43.07  Aligned_cols=86  Identities=12%  Similarity=0.139  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHhccce-----eeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCCce--e--
Q 027371           14 SFSRSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIF--N--   79 (224)
Q Consensus        14 ~fys~li~Eie~iGW~k-----l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~~f--~--   79 (224)
                      .-..+|.+|+.++.=+.     +.-.+.++...+..+....     |....++|.+|.+||.+||.+...=|..+  +  
T Consensus        20 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~   99 (136)
T 2h2y_A           20 NANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVY   99 (136)
T ss_dssp             SHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCC
Confidence            44689999999984331     2223567888888887432     78999999999999999999875544211  1  


Q ss_pred             -----------cccCccCcHHHHHHHHHHHH
Q 027371           80 -----------LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        80 -----------~~W~~~ssL~~v~~qF~~~L   99 (224)
                                 -.|+|..++..|+...+..|
T Consensus       100 ~~G~ICl~iL~~~WsP~~ti~~vL~si~sll  130 (136)
T 2h2y_A          100 SNGDICLSVLGDDYNPSLSISGLILSIISML  130 (136)
T ss_dssp             TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCEEECccccCCCCCCCcHHHHHHHHHHHH
Confidence                       17999999999888877765

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=96.41  E-value=0.039  Score=42.90  Aligned_cols=85  Identities=12%  Similarity=0.151  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCCce--e----
Q 027371           16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIF--N----   79 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~~f--~----   79 (224)
                      ..+|.+|+.++.=+     .+.-.+.++...+..+....     |....++|.++.+||.+||.+...=|..+  +    
T Consensus         8 ~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~   87 (125)
T 2fo3_A            8 NYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSN   87 (125)
T ss_dssp             -CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCC
Confidence            36899999988432     12223567888888887432     78999999999999999999875544211  1    


Q ss_pred             ---------cccCccCcHHHHHHHHHHHHH
Q 027371           80 ---------LKWSRKSRLKDLLQQFREHLE  100 (224)
Q Consensus        80 ---------~~W~~~ssL~~v~~qF~~~Le  100 (224)
                               -.|++..++..|+...+..|.
T Consensus        88 G~iCl~iL~~~W~P~~~i~~vl~si~~ll~  117 (125)
T 2fo3_A           88 GDICLSLLGDDYNPSLSISGLVLSIISMLS  117 (125)
T ss_dssp             SBBCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred             CEEEchhcCCCCCCCCcHHHHHHHHHHHHh
Confidence                     179999999999888877764

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=96.37  E-value=0.042  Score=44.92  Aligned_cols=93  Identities=16%  Similarity=0.339  Sum_probs=65.0

Q ss_pred             cccCCCchhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC
Q 027371            7 RESANSSSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY   76 (224)
Q Consensus         7 ~~~~~~~~fys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~   76 (224)
                      ++....+.--.+|.+|+.++.=+     .+.-.+.++...+..+....     |....++|.+|.+||.+||.|...=|.
T Consensus        14 ~~~~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i   93 (166)
T 2ayv_A           14 RENLYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKI   93 (166)
T ss_dssp             -----CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred             cccccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCC
Confidence            33444455668999999998432     22334567888888888432     789999999999999999998754442


Q ss_pred             ---------c-----eecccCccCcHHHHHHHHHHHH
Q 027371           77 ---------I-----FNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ---------~-----f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                               .     +.-.|+|..+|..|+...+..|
T Consensus        94 ~HPNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll  130 (166)
T 2ayv_A           94 YHPNINSQGAICLDILKDQWSPALTISKVLLSISSLL  130 (166)
T ss_dssp             CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             cCCcCCCCCeEEcccccccCCCCCcHHHHHHHHHHHH
Confidence                     0     1117999999988887777665

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=96.20  E-value=0.041  Score=44.00  Aligned_cols=84  Identities=12%  Similarity=0.313  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      -.+|.+|+.++.=+     .+.-.+.++...+..+...     .|....++|.+|.+||.+||.|...=|.         
T Consensus         6 ~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   85 (152)
T 2aak_A            6 RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADG   85 (152)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTS
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCCC
Confidence            47899999988422     2233466788888888753     4788999999999999999998754431         


Q ss_pred             c-----eecccCccCcHHHHHHHHHHHH
Q 027371           77 I-----FNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ~-----f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                      .     +.-.|+|..+|..|+...+..|
T Consensus        86 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll  113 (152)
T 2aak_A           86 SICLDILQNQWSPIYDVAAILTSIQSLL  113 (152)
T ss_dssp             BBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred             EEechhhcCCCCCCCcHHHHHHHHHHHH
Confidence            0     0116999889988877766655

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=96.18  E-value=0.053  Score=43.72  Aligned_cols=90  Identities=21%  Similarity=0.331  Sum_probs=65.6

Q ss_pred             CCCchhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---
Q 027371           10 ANSSSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---   76 (224)
Q Consensus        10 ~~~~~fys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~---   76 (224)
                      .-++..-++|.+|+.++.=+     .+.-.+.++...+..+....     |....++|.+|.+||.+||.|...=|.   
T Consensus         9 ~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   88 (158)
T 1zdn_A            9 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHP   88 (158)
T ss_dssp             CSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             ccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccC
Confidence            34556688999999998533     12223567888888887433     678999999999999999999865552   


Q ss_pred             ------ce-----ecccCccCcHHHHHHHHHHHH
Q 027371           77 ------IF-----NLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ------~f-----~~~W~~~ssL~~v~~qF~~~L   99 (224)
                            .+     .-.|+|..++..|+...+..|
T Consensus        89 nv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll  122 (158)
T 1zdn_A           89 NVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL  122 (158)
T ss_dssp             TBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHH
Confidence                  00     117999889988877766655

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=96.12  E-value=0.058  Score=43.14  Aligned_cols=85  Identities=15%  Similarity=0.336  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      .++|.+|+.++.-+     .+.-.+.|+...+..+...     .|....++|.++.+||.+||.|...=|.         
T Consensus         6 ~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G   85 (151)
T 4gpr_A            6 MRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNG   85 (151)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECCCC
Confidence            57999999998533     2233466899999998843     2788999999999999999998755442         


Q ss_pred             c-----eecccCccCcHHHHHHHHHHHHH
Q 027371           77 I-----FNLKWSRKSRLKDLLQQFREHLE  100 (224)
Q Consensus        77 ~-----f~~~W~~~ssL~~v~~qF~~~Le  100 (224)
                      .     +.-.|++..++..|+...+..|.
T Consensus        86 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll~  114 (151)
T 4gpr_A           86 VICLDILKDQWSPALTLSRVLLSISSLLT  114 (151)
T ss_dssp             BBCCGGGTTTCCTTCCHHHHHHHHHHHHH
T ss_pred             EEEcccccCCCCCCCcHHHHHHHHHHHhc
Confidence            0     11279999999988877766653

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=96.07  E-value=0.046  Score=44.57  Aligned_cols=87  Identities=20%  Similarity=0.308  Sum_probs=61.7

Q ss_pred             chhHHHHHHHHHHhccce-----eeeecC-----CcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-
Q 027371           13 SSFSRSVYSEIEEVGWEH-----LVRLSE-----DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-   76 (224)
Q Consensus        13 ~~fys~li~Eie~iGW~k-----l~~id~-----~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~-   76 (224)
                      .+=-.+|.+|+.++.-+.     +.-.+.     ++......+....     |....++|.++.+||.+||.|...=|. 
T Consensus         9 ~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~   88 (163)
T 3rcz_B            9 SLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLF   88 (163)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCc
Confidence            344689999999986442     222222     6777788887543     688999999999999999998755441 


Q ss_pred             --------ce-----ec--ccCccCcHHHHHHHHHHHH
Q 027371           77 --------IF-----NL--KWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 --------~f-----~~--~W~~~ssL~~v~~qF~~~L   99 (224)
                              .+     .-  .|++..++..|+...+..|
T Consensus        89 HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll  126 (163)
T 3rcz_B           89 HPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL  126 (163)
T ss_dssp             STTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred             cCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHH
Confidence                    01     11  3999999988877766655

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=96.06  E-value=0.054  Score=43.21  Aligned_cols=83  Identities=20%  Similarity=0.370  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---------c
Q 027371           17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---------I   77 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~---------~   77 (224)
                      ++|.+|+.++.=+     .+.-.+.++...+..+....     |....++|.+|.+||.+||.|...=|.         .
T Consensus         4 ~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~   83 (149)
T 2r0j_A            4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGR   83 (149)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCB
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCCE
Confidence            6889999988433     22234566888888876432     789999999999999999998765442         0


Q ss_pred             -----eecccCccCcHHHHHHHHHHHH
Q 027371           78 -----FNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        78 -----f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                           +.-.|+|..++..|+...+..|
T Consensus        84 iCl~iL~~~W~p~~~i~~vl~~i~~ll  110 (149)
T 2r0j_A           84 ICLDILKDKWSPALQIRTVLLSIQALL  110 (149)
T ss_dssp             BCCGGGTTTCCTTSCHHHHHHHHHHHH
T ss_pred             EechhcCCCCCCCCcHHHHHHHHHHHH
Confidence                 1117999999988887776665

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=96.05  E-value=0.072  Score=43.42  Aligned_cols=87  Identities=17%  Similarity=0.363  Sum_probs=64.2

Q ss_pred             chhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC------
Q 027371           13 SSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY------   76 (224)
Q Consensus        13 ~~fys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~------   76 (224)
                      +.--.+|.+|+.++.=+     .+.-.+.++...+..+....     |....++|.+|.+||.+||.|...=|.      
T Consensus        18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~   97 (165)
T 2c4o_A           18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   97 (165)
T ss_dssp             HHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence            34468999999998533     22334667888888887432     688999999999999999999765552      


Q ss_pred             --------ceecccCccCcHHHHHHHHHHHH
Q 027371           77 --------IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 --------~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                              .+.-.|+|..+|..|+...+..|
T Consensus        98 ~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll  128 (165)
T 2c4o_A           98 SNGSICLDILRSQWSPALTISKVLLSICSLL  128 (165)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCeEeehhhcCCCCCcCcHHHHHHHHHHHH
Confidence                    01127999999988887776665

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=96.01  E-value=0.07  Score=42.86  Aligned_cols=88  Identities=14%  Similarity=0.255  Sum_probs=63.0

Q ss_pred             CchhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCCc----
Q 027371           12 SSSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYI----   77 (224)
Q Consensus        12 ~~~fys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~~----   77 (224)
                      +..--.+|.+|+.++.=+     .+.-.+.++......+...     .|....++|.+|.+||.+||.|...=|.-    
T Consensus         7 ~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   86 (156)
T 2e2c_A            7 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV   86 (156)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCC
Confidence            344568999999988532     1222355788888888743     27889999999999999999987654421    


Q ss_pred             ----------eecccCccCcHHHHHHHHHHHH
Q 027371           78 ----------FNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        78 ----------f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                                +.-.|+|..++..|+...+..|
T Consensus        87 ~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll  118 (156)
T 2e2c_A           87 DQSGNICLDILKENWTASYDVRTILLSLQSLL  118 (156)
T ss_dssp             CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHT
T ss_pred             ccCceEECccccccCCCCCcHHHHHHHHHHHH
Confidence                      0116999999988887666555

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=95.99  E-value=0.089  Score=43.14  Aligned_cols=92  Identities=17%  Similarity=0.239  Sum_probs=66.0

Q ss_pred             ccCCCchhHHHHHHHHHHhccc-----eeeeec-CCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC
Q 027371            8 ESANSSSFSRSVYSEIEEVGWE-----HLVRLS-EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY   76 (224)
Q Consensus         8 ~~~~~~~fys~li~Eie~iGW~-----kl~~id-~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~   76 (224)
                      .|+.......+|.+|+.++.=+     .+.-.+ .++...+..+....     |....++|.+|.+||.+||.|...=|.
T Consensus        11 ~~~~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i   90 (172)
T 2awf_A           11 SSGLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI   90 (172)
T ss_dssp             --CCCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred             cCCChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCC
Confidence            3556677788999999998433     122234 57888888887533     789999999999999999998754442


Q ss_pred             --------------cee-------------cccCccCcHHHHHHHHHHHH
Q 027371           77 --------------IFN-------------LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 --------------~f~-------------~~W~~~ssL~~v~~qF~~~L   99 (224)
                                    .+.             -.|+|..+|..|+...+..|
T Consensus        91 ~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll  140 (172)
T 2awf_A           91 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML  140 (172)
T ss_dssp             CCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHH
T ss_pred             ccCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHH
Confidence                          011             25999889988887776665

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=95.98  E-value=0.06  Score=42.92  Aligned_cols=84  Identities=19%  Similarity=0.419  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      -++|.+|+.++.=+     .+.-.+.++...+..+...     .|....++|.+|.+||.+||.|...=|.         
T Consensus         6 ~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   85 (150)
T 1z2u_A            6 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG   85 (150)
T ss_dssp             HHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCC
Confidence            47899999998422     2233456688888887743     2788999999999999999998765442         


Q ss_pred             -----ceecccCccCcHHHHHHHHHHHH
Q 027371           77 -----IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -----~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                           .+.-.|+|..++..|+...+..|
T Consensus        86 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll  113 (150)
T 1z2u_A           86 SICLDILRSQWSPALTISKVLLSICSLL  113 (150)
T ss_dssp             BBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             eEeeccccCCCCCCCCHHHHHHHHHHHh
Confidence                 01117999999988887776665

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=95.86  E-value=0.06  Score=43.24  Aligned_cols=83  Identities=14%  Similarity=0.333  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------c
Q 027371           17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---------I   77 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~---------~   77 (224)
                      .+|.+|+.++.=+     .+.-.+.++...+..+...     .|....++|.+|.+||.+||.|...=|.         .
T Consensus         8 ~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~   87 (155)
T 1jat_A            8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGR   87 (155)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCCCCE
Confidence            7899999988422     2333456688888888743     2788999999999999999998754441         0


Q ss_pred             e-----ecccCccCcHHHHHHHHHHHH
Q 027371           78 F-----NLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        78 f-----~~~W~~~ssL~~v~~qF~~~L   99 (224)
                      +     .-.|++..++..|+...+..|
T Consensus        88 iCl~iL~~~W~p~~~i~~vl~~i~~ll  114 (155)
T 1jat_A           88 ICLDVLKTNWSPALQIRTVLLSIQALL  114 (155)
T ss_dssp             BCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             EEchhhccCCCCCCCHHHHHHHHHHHH
Confidence            0     117999999988887766655

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=95.84  E-value=0.093  Score=42.27  Aligned_cols=84  Identities=20%  Similarity=0.341  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhcc-----c---eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC----c-
Q 027371           16 SRSVYSEIEEVGW-----E---HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----I-   77 (224)
Q Consensus        16 ys~li~Eie~iGW-----~---kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~----~-   77 (224)
                      -.+|.+|+.++.-     .   .+.-.+.++...+..+...     .|....++|.+|.+||.+||.|...=|.    . 
T Consensus        10 ~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~   89 (159)
T 2bep_A           10 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS   89 (159)
T ss_dssp             HHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCC
Confidence            4789999988843     1   2233466799999888742     2778999999999999999998765431    0 


Q ss_pred             -----e--e---cccCccCcHHHHHHHHHHHH
Q 027371           78 -----F--N---LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        78 -----f--~---~~W~~~ssL~~v~~qF~~~L   99 (224)
                           +  .   -.|+|..++..|+...+..|
T Consensus        90 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll  121 (159)
T 2bep_A           90 SVTGAICLDILKDQWAAAMTLRTVLLSLQALL  121 (159)
T ss_dssp             TTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCEEeChhhhccCCCCCcHHHHHHHHHHHH
Confidence                 1  1   15999999988887777666

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=95.83  E-value=0.094  Score=42.31  Aligned_cols=84  Identities=15%  Similarity=0.255  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhccc-----eeeeecC-CcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC--------
Q 027371           16 SRSVYSEIEEVGWE-----HLVRLSE-DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY--------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl~~id~-~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~--------   76 (224)
                      .++|.+|+.++.=+     .+.-.+. ++...+..+....     |....++|.+|.+||.+||.|...=|.        
T Consensus         5 ~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~   84 (164)
T 3h8k_A            5 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPD   84 (164)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCC
Confidence            57899999998533     1222444 8999999988432     688999999999999999998754441        


Q ss_pred             ------cee-------------cccCccCcHHHHHHHHHHHH
Q 027371           77 ------IFN-------------LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ------~f~-------------~~W~~~ssL~~v~~qF~~~L   99 (224)
                            .+.             -.|+|..++..|+...+..|
T Consensus        85 G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll  126 (164)
T 3h8k_A           85 GRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML  126 (164)
T ss_dssp             SBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHH
T ss_pred             CcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHH
Confidence                  011             25999889998887777665

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=95.82  E-value=0.064  Score=43.06  Aligned_cols=84  Identities=17%  Similarity=0.308  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      -++|.+|+.++.-+     .+.-.+.++...+..+....     |....++|.+|.+||.+||.|...=|.         
T Consensus         7 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   86 (154)
T 2c2v_B            7 PRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG   86 (154)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccCC
Confidence            37899999988533     12334567888888887422     788999999999999999998765542         


Q ss_pred             c-----eecccCccCcHHHHHHHHHHHH
Q 027371           77 I-----FNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ~-----f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                      .     +.-.|+|..+|..|+...+..|
T Consensus        87 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll  114 (154)
T 2c2v_B           87 RICLDILKDKWSPALQIRTVLLSIQALL  114 (154)
T ss_dssp             BBCCHHHHTSCCTTCCHHHHHHHHHHHT
T ss_pred             eEEchhccCCCCCCCcHHHHHHHHHHHH
Confidence            0     0127999889988877666554

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=95.81  E-value=0.088  Score=43.86  Aligned_cols=89  Identities=16%  Similarity=0.320  Sum_probs=64.2

Q ss_pred             CchhHHHHHHHHHHhcc--------ceeeeecCCcceEEEEEEe--CC----C-----------CEEEEEEEecCCCCCC
Q 027371           12 SSSFSRSVYSEIEEVGW--------EHLVRLSEDLKFLSFRVID--KK----G-----------RVHCMEIQLDKNYPRS   66 (224)
Q Consensus        12 ~~~fys~li~Eie~iGW--------~kl~~id~~ls~i~l~~~D--~~----g-----------R~H~l~v~l~~~yP~~   66 (224)
                      +..-..+|.+|+.++.-        -.+.-.+.++...++.+..  ..    |           ....++|.+|.+||.+
T Consensus        25 s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~  104 (186)
T 1zuo_A           25 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD  104 (186)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCC
Confidence            34457899999998743        2333356678888888874  21    2           6788999999999999


Q ss_pred             CCceeecCCCc------------ee-c---ccCccCcHHHHHHHHHHHHH
Q 027371           67 PPSISADVPYI------------FN-L---KWSRKSRLKDLLQQFREHLE  100 (224)
Q Consensus        67 ~P~~~~dlP~~------------f~-~---~W~~~ssL~~v~~qF~~~Le  100 (224)
                      ||.|..-=|.-            +. +   .|+|..++..|+...+..|.
T Consensus       105 PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~  154 (186)
T 1zuo_A          105 PPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLV  154 (186)
T ss_dssp             CCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHc
Confidence            99887544421            01 1   59999999999888887764

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=95.74  E-value=0.081  Score=43.31  Aligned_cols=84  Identities=13%  Similarity=0.341  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      -.+|.+|+.++.=+     .+.-.+.++...+..+....     |....++|.+|.+||.+||.|...=|.         
T Consensus         6 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~G   85 (169)
T 1ayz_A            6 RRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANG   85 (169)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTS
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCCC
Confidence            47999999998433     22334667888877777432     788999999999999999998755442         


Q ss_pred             -----ceecccCccCcHHHHHHHHHHHH
Q 027371           77 -----IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -----~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                           .+.-.|+|..+|..|+...+..|
T Consensus        86 ~ICl~iL~~~WsP~~~i~~vL~si~~ll  113 (169)
T 1ayz_A           86 EICLDILQNRWTPTYDVASILTSIQSLF  113 (169)
T ss_dssp             BBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             eEeehhhccCCCCcCcHHHHHHHHHHHH
Confidence                 01116999888988877665554

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=95.66  E-value=0.097  Score=41.66  Aligned_cols=83  Identities=27%  Similarity=0.394  Sum_probs=60.0

Q ss_pred             HHHHHHHHHhccc-----eeeeecC-CcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC----c----
Q 027371           17 RSVYSEIEEVGWE-----HLVRLSE-DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----I----   77 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id~-~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~----~----   77 (224)
                      .+|.+|+.++.=+     .+.-.+. ++...+..+...     .|....++|.+|.+||.+||.|...=+.    .    
T Consensus         4 ~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~   83 (149)
T 1fxt_A            4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVT   83 (149)
T ss_dssp             HHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSS
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCC
Confidence            6889999988432     2233345 789999888742     2788999999999999999998765431    0    


Q ss_pred             ee-------cccCccCcHHHHHHHHHHHH
Q 027371           78 FN-------LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        78 f~-------~~W~~~ssL~~v~~qF~~~L   99 (224)
                      -.       -.|+|..++..|+...+..|
T Consensus        84 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll  112 (149)
T 1fxt_A           84 GAICLDILKNAWSPVITLKSALISLQALL  112 (149)
T ss_dssp             CCBCCHHHHTSCCTTCCHHHHHHHHHHHH
T ss_pred             CeEeCCcCCCCCCCCCcHHHHHHHHHHHH
Confidence            01       16999889988887766655

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=95.61  E-value=0.1  Score=41.85  Aligned_cols=83  Identities=16%  Similarity=0.255  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhccc-----ee-eeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC--------
Q 027371           16 SRSVYSEIEEVGWE-----HL-VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY--------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl-~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~--------   76 (224)
                      -.+|.+|+.++.-+     .+ .-.+.++...+..+. ..     |....++|.++.+||.+||.|...=|.        
T Consensus         6 ~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~   84 (155)
T 1wzv_A            6 SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDEN   84 (155)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCC
Confidence            36899999988432     22 223567888888887 43     578899999999999999998755442        


Q ss_pred             ------ce-ecccCccCcHHHHHHHHHHHH
Q 027371           77 ------IF-NLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ------~f-~~~W~~~ssL~~v~~qF~~~L   99 (224)
                            .+ .-.|+|..+|..|+...+..|
T Consensus        85 G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll  114 (155)
T 1wzv_A           85 GQICLPIISSENWKPCTKTCQVLEALNVLV  114 (155)
T ss_dssp             CBCCCGGGCTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CeEeecCCCccCCCCCCcHHHHHHHHHHHH
Confidence                  11 126999889988887766655

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=95.60  E-value=0.11  Score=43.50  Aligned_cols=87  Identities=16%  Similarity=0.337  Sum_probs=63.4

Q ss_pred             chhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC------
Q 027371           13 SSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY------   76 (224)
Q Consensus        13 ~~fys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~------   76 (224)
                      +.--.+|.+|+.++.=+     .+.-.+.++...+..+....     |....++|.+|.+||.+||.|...=|.      
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~  126 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN  126 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence            34578999999998533     12223567888888887543     789999999999999999998754442      


Q ss_pred             --------ceecccCccCcHHHHHHHHHHHH
Q 027371           77 --------IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 --------~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                              .+.-.|+|..+|..|+...+..|
T Consensus       127 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll  157 (194)
T 3bzh_A          127 SQGVICLDILKDNWSPALTISKVLLSICSLL  157 (194)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCceechhhhccCCCcCcHHHHHHHHHHHH
Confidence                    01116999989988887766655

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=95.51  E-value=0.15  Score=42.57  Aligned_cols=84  Identities=20%  Similarity=0.328  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhccc--------eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----c-
Q 027371           16 SRSVYSEIEEVGWE--------HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----I-   77 (224)
Q Consensus        16 ys~li~Eie~iGW~--------kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~----~-   77 (224)
                      .++|.+|+.++.-+        .+.-.+.++...+..+....     |....++|.+|.+||.+||.|...=|.    . 
T Consensus         7 ~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~   86 (201)
T 3k9o_A            7 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS   86 (201)
T ss_dssp             HHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCc
Confidence            47899999988432        23445678999999988432     788999999999999999998755431    0 


Q ss_pred             ----------eecccCccCcHHHHHHHHHHHH
Q 027371           78 ----------FNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        78 ----------f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                                +.-.|+|..+|..|+...+..|
T Consensus        87 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll  118 (201)
T 3k9o_A           87 SVTGAICLDILKDQWAAAMTLRTVLLSLQALL  118 (201)
T ss_dssp             TTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCeeeCcccccCCCCCCCHHHHHHHHHHHh
Confidence                      1127999999988877666555

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=95.49  E-value=0.15  Score=41.23  Aligned_cols=84  Identities=17%  Similarity=0.317  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhccce-----eeeec-CCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC--------
Q 027371           16 SRSVYSEIEEVGWEH-----LVRLS-EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY--------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~k-----l~~id-~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~--------   76 (224)
                      -++|.+|+.++.=+.     +.-.+ .++...+..+....     |....++|.+|.+||.+||.|...=|.        
T Consensus         6 ~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~   85 (165)
T 2ucz_A            6 QKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPN   85 (165)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCC
Confidence            578999999885331     22234 57888888887543     688999999999999999998754431        


Q ss_pred             ------ce-------------ecccCccCcHHHHHHHHHHHH
Q 027371           77 ------IF-------------NLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ------~f-------------~~~W~~~ssL~~v~~qF~~~L   99 (224)
                            .+             .-.|+|..++..|+...+..|
T Consensus        86 G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll  127 (165)
T 2ucz_A           86 GEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSML  127 (165)
T ss_dssp             SBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHH
T ss_pred             CcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHH
Confidence                  11             126999889988887776665

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=95.38  E-value=0.15  Score=42.41  Aligned_cols=90  Identities=13%  Similarity=0.220  Sum_probs=60.6

Q ss_pred             CCCchhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---
Q 027371           10 ANSSSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---   76 (224)
Q Consensus        10 ~~~~~fys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~---   76 (224)
                      ..+..--.+|.+|+.++.=+     .+.-.+.++...+..+....     |....++|.+|.+||.+||.|...=|.   
T Consensus        10 ~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~~~~~   89 (187)
T 2f4w_A           10 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRF   89 (187)
T ss_dssp             ----CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSB
T ss_pred             CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCCCcee
Confidence            44556678999999998533     22233567888888887432     778899999999999999998754441   


Q ss_pred             ---------ce---ecccCccCcHHHHHHHHHHHH
Q 027371           77 ---------IF---NLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ---------~f---~~~W~~~ssL~~v~~qF~~~L   99 (224)
                               .+   .-.|+|..++..|+...+..|
T Consensus        90 ~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll  124 (187)
T 2f4w_A           90 KCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM  124 (187)
T ss_dssp             CTTSCBC----------CCTTCCHHHHHHHHHHHH
T ss_pred             ccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHh
Confidence                     11   126999889988866655554

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=95.38  E-value=0.13  Score=43.86  Aligned_cols=91  Identities=18%  Similarity=0.224  Sum_probs=65.4

Q ss_pred             cCCCchhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC--
Q 027371            9 SANSSSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY--   76 (224)
Q Consensus         9 ~~~~~~fys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~--   76 (224)
                      ....+.--.+|.+|+.++.-+     .+.-.+.++...+..+....     |....++|.+|.+||.+||.|...=|.  
T Consensus        18 ~~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H   97 (216)
T 2pwq_A           18 YFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH   97 (216)
T ss_dssp             -CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence            334455578999999998533     23334667999999887433     688999999999999999998754431  


Q ss_pred             --c------eec-----ccCccCcHHHHHHHHHHHH
Q 027371           77 --I------FNL-----KWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 --~------f~~-----~W~~~ssL~~v~~qF~~~L   99 (224)
                        .      +.+     .|+|..+|..|+...+..|
T Consensus        98 PNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL  133 (216)
T 2pwq_A           98 PNISSQTGAICLDVLKNEWSPALTIRTALLSIQALL  133 (216)
T ss_dssp             TTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHH
Confidence              1      111     5999989988877766655

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=95.37  E-value=0.13  Score=42.55  Aligned_cols=88  Identities=14%  Similarity=0.211  Sum_probs=61.6

Q ss_pred             CchhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCCc----
Q 027371           12 SSSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYI----   77 (224)
Q Consensus        12 ~~~fys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~~----   77 (224)
                      +..--.+|.+|+.++.-+     .+.-.+.++......+....     |....++|.+|.+||.+||.|...=|.-    
T Consensus        28 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV  107 (179)
T 1i7k_A           28 RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNV  107 (179)
T ss_dssp             --CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTB
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCcc
Confidence            345578999999987533     11223456777777777433     6899999999999999999987654420    


Q ss_pred             ----------eecccCccCcHHHHHHHHHHHH
Q 027371           78 ----------FNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        78 ----------f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                                +.-.|++..+|..|+...+..|
T Consensus       108 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll  139 (179)
T 1i7k_A          108 DTQGNISLDILKEKWSALYDVRTILLSIQSLL  139 (179)
T ss_dssp             CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             ccCCeEEcccCcCcCCCCCCHHHHHHHHHHHH
Confidence                      1116999989988877666655

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=95.36  E-value=0.21  Score=40.66  Aligned_cols=86  Identities=15%  Similarity=0.276  Sum_probs=62.1

Q ss_pred             hhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-------
Q 027371           14 SFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-------   76 (224)
Q Consensus        14 ~fys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~-------   76 (224)
                      +--.+|.+|+.++.-+     .+.-.+.++...+..+....     |....++|.+|.+||.+||.|...=|.       
T Consensus         4 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~   83 (169)
T 1yh2_A            4 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS   83 (169)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCc
Confidence            3457999999998432     12223567888888887532     789999999999999999998755442       


Q ss_pred             -------cee----cccCccCcHHHHHHHHHHHH
Q 027371           77 -------IFN----LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -------~f~----~~W~~~ssL~~v~~qF~~~L   99 (224)
                             .+.    -.|++..+|..|+...+..|
T Consensus        84 ~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll  117 (169)
T 1yh2_A           84 AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLM  117 (169)
T ss_dssp             TCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHH
T ss_pred             CCeEecccccCCcccCCCCCCcHHHHHHHHHHHH
Confidence                   111    26999889988876666555

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=95.34  E-value=0.11  Score=42.14  Aligned_cols=83  Identities=12%  Similarity=0.317  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhccce-----------------eeeecCCcceEEEEEEeCC-------CCEEEEEEEecCCCCCCCCcee
Q 027371           16 SRSVYSEIEEVGWEH-----------------LVRLSEDLKFLSFRVIDKK-------GRVHCMEIQLDKNYPRSPPSIS   71 (224)
Q Consensus        16 ys~li~Eie~iGW~k-----------------l~~id~~ls~i~l~~~D~~-------gR~H~l~v~l~~~yP~~~P~~~   71 (224)
                      .++|.+|+.++.=+.                 +.-.+.++...++.+....       |....++|.++.+||.+||.|.
T Consensus        10 ~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~   89 (167)
T 4ds2_A           10 NKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVR   89 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEE
T ss_pred             HHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEE
Confidence            468888888875432                 2233667899999988432       7889999999999999999987


Q ss_pred             ecCCCcee---------------cccCccCcHHHHHHHHHHHH
Q 027371           72 ADVPYIFN---------------LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        72 ~dlP~~f~---------------~~W~~~ssL~~v~~qF~~~L   99 (224)
                      ..=|. |.               -.|++..++..++-+....|
T Consensus        90 f~t~i-~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l  131 (167)
T 4ds2_A           90 FVTPV-YSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRV  131 (167)
T ss_dssp             ESSCC-CCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHH
T ss_pred             EeCCc-ccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHH
Confidence            65552 11               27999888888766555544

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=95.29  E-value=0.15  Score=41.71  Aligned_cols=86  Identities=16%  Similarity=0.235  Sum_probs=62.6

Q ss_pred             hhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----c--
Q 027371           14 SFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----I--   77 (224)
Q Consensus        14 ~fys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~----~--   77 (224)
                      .-..+|.+|+.++.=+     .+.-.+.++......+....     |....++|.+|.+||.+||.|...=|.    .  
T Consensus        23 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~  102 (169)
T 1yrv_A           23 RAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDP  102 (169)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccC
Confidence            3468999999988422     22335677999999887432     788999999999999999998754431    1  


Q ss_pred             ---------ee--cccCccCcHHHHHHHHHHHH
Q 027371           78 ---------FN--LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        78 ---------f~--~~W~~~ssL~~v~~qF~~~L   99 (224)
                               +.  -.|+|..+|..|+...+..|
T Consensus       103 ~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll  135 (169)
T 1yrv_A          103 HTGQPCIDFLDNPEKWNTNYTLSSILLALQVML  135 (169)
T ss_dssp             TTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHH
T ss_pred             CCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHH
Confidence                     11  26999888888877766655

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=95.23  E-value=0.17  Score=40.95  Aligned_cols=84  Identities=25%  Similarity=0.435  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhccce-----eeee-c-C--CcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-----
Q 027371           16 SRSVYSEIEEVGWEH-----LVRL-S-E--DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-----   76 (224)
Q Consensus        16 ys~li~Eie~iGW~k-----l~~i-d-~--~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~-----   76 (224)
                      -.+|.+|+.++.-+.     -+.. + .  ++...+..+....     |....++|.+|.+||.+||.+...=|.     
T Consensus        23 ~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV  102 (156)
T 2q0v_A           23 SFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCV  102 (156)
T ss_dssp             HHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTB
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCC
Confidence            479999999986441     1222 2 2  4888888887432     789999999999999999998754431     


Q ss_pred             ----ce-----e--cccCccCcHHHHHHHHHHHH
Q 027371           77 ----IF-----N--LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ----~f-----~--~~W~~~ssL~~v~~qF~~~L   99 (224)
                          .+     .  -.|+|..+|..|+...+..|
T Consensus       103 ~~~G~icisCL~iL~~WsP~~ti~~vL~sI~~ll  136 (156)
T 2q0v_A          103 DNCGRVIKNNLHILKNWNRNYTIETILISLRQEM  136 (156)
T ss_dssp             CTTSBBCGGGSHHHHTCCTTCCHHHHHHHHHHHT
T ss_pred             ccCCeEehhhcccccCCCCcCcHHHHHHHHHHHH
Confidence                11     1  16999989988877666655

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=95.18  E-value=0.16  Score=40.77  Aligned_cols=84  Identities=20%  Similarity=0.375  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHhcccee----ee-e-c----CCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----
Q 027371           16 SRSVYSEIEEVGWEHL----VR-L-S----EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----   76 (224)
Q Consensus        16 ys~li~Eie~iGW~kl----~~-i-d----~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~----   76 (224)
                      .++|.+|+.++.-+..    +. . +    .++...+..+....     |....++|.+|.+||.+||.|...=+.    
T Consensus         6 ~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   85 (157)
T 2gjd_A            6 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPN   85 (157)
T ss_dssp             HHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCC
Confidence            4789999998853321    11 1 1    35666677776422     678899999999999999998754331    


Q ss_pred             ----------ceec--ccCccCcHHHHHHHHHHHH
Q 027371           77 ----------IFNL--KWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ----------~f~~--~W~~~ssL~~v~~qF~~~L   99 (224)
                                .+.-  .|+|..+|..|+...+..|
T Consensus        86 v~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll  120 (157)
T 2gjd_A           86 VYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL  120 (157)
T ss_dssp             BCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHH
Confidence                      1111  5999999988877766655

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=95.11  E-value=0.1  Score=41.77  Aligned_cols=83  Identities=17%  Similarity=0.346  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhccc-----eeeee-cCCcceEEEEEEeC----CCCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371           17 RSVYSEIEEVGWE-----HLVRL-SEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~i-d~~ls~i~l~~~D~----~gR~H~l~v~l~~~yP~~~P~~~~dlP~----------   76 (224)
                      .+|.+|+.++.-+     .++.. +.++...++.+.-.    .|....++|.+|.+||.+||.|...=|.          
T Consensus         5 ~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~   84 (154)
T 1c4z_D            5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQ   84 (154)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCB
T ss_pred             HHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCCCE
Confidence            4788999988533     12333 45788888887611    2677889999999999999998765442          


Q ss_pred             ----cee-cccCccCcHHHHHHHHHHHH
Q 027371           77 ----IFN-LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ----~f~-~~W~~~ssL~~v~~qF~~~L   99 (224)
                          .+. -.|++..++..|+...+..|
T Consensus        85 iCl~iL~~~~W~p~~~i~~vl~~i~~ll  112 (154)
T 1c4z_D           85 VCLPVISAENWKPATKTDQVIQSLIALV  112 (154)
T ss_dssp             BCCTTTSSSSCCTTCCHHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCCCCcHHHHHHHHHHHH
Confidence                011 26999889988877766555

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=95.10  E-value=0.2  Score=40.47  Aligned_cols=87  Identities=13%  Similarity=0.295  Sum_probs=60.5

Q ss_pred             chhHHHHHHHHHHhccce--eee--ecCCcceEEEEEEeC----CCCEEEEEEEecCCCCCCCCceeecCCC--------
Q 027371           13 SSFSRSVYSEIEEVGWEH--LVR--LSEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPY--------   76 (224)
Q Consensus        13 ~~fys~li~Eie~iGW~k--l~~--id~~ls~i~l~~~D~----~gR~H~l~v~l~~~yP~~~P~~~~dlP~--------   76 (224)
                      +.--.+|.+|+.++.=..  -+.  .+.++....+.+--.    .|....++|.+|.+||.+||.|...=|.        
T Consensus         5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~   84 (160)
T 1y8x_A            5 SAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLE   84 (160)
T ss_dssp             CHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred             cHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCCC
Confidence            445689999999983111  122  246688887776221    1677899999999999999998765552        


Q ss_pred             -c--e---ecccCccCcHHHHHHHHHHHH
Q 027371           77 -I--F---NLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -~--f---~~~W~~~ssL~~v~~qF~~~L   99 (224)
                       .  +   .-.|+|..++..|+...+..|
T Consensus        85 G~iCl~iL~~~W~p~~~i~~vL~~i~~ll  113 (160)
T 1y8x_A           85 GNVCLNILREDWKPVLTINSIIYGLQYLF  113 (160)
T ss_dssp             CBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CeEEcccchhhccCCCCHHHHHHHHHHHH
Confidence             0  1   126999889988887776655

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=95.05  E-value=0.34  Score=38.09  Aligned_cols=83  Identities=20%  Similarity=0.366  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhccce-----eeee-c-C--CcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC------
Q 027371           17 RSVYSEIEEVGWEH-----LVRL-S-E--DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY------   76 (224)
Q Consensus        17 s~li~Eie~iGW~k-----l~~i-d-~--~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~------   76 (224)
                      .+|.+|+.++.-+.     -+.. + .  ++...+..+....     |....++|.++.+||.+||.+...=|.      
T Consensus         9 ~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   88 (138)
T 1jat_B            9 FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVN   88 (138)
T ss_dssp             HHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBC
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEe
Confidence            69999999985441     1223 2 2  3778888877332     788999999999999999988654331      


Q ss_pred             ----c----ee--cccCccCcHHHHHHHHHHHH
Q 027371           77 ----I----FN--LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ----~----f~--~~W~~~ssL~~v~~qF~~~L   99 (224)
                          .    +.  -.|++..++..|+...+..|
T Consensus        89 ~~~G~i~~cL~~l~~W~p~~~i~~vl~~i~~ll  121 (138)
T 1jat_B           89 PTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEM  121 (138)
T ss_dssp             TTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCEEeeecccCCCCCCcCcHHHHHHHHHHHH
Confidence                1    11  17999889988887776666

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=95.03  E-value=0.098  Score=42.27  Aligned_cols=85  Identities=21%  Similarity=0.353  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHhccce-----eeee-----cCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---
Q 027371           15 FSRSVYSEIEEVGWEH-----LVRL-----SEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---   76 (224)
Q Consensus        15 fys~li~Eie~iGW~k-----l~~i-----d~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~---   76 (224)
                      --++|.+|+.++.-+.     +.-.     +.++...+..+...     .|....++|.+|.+||.+||.|...=|.   
T Consensus         8 a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   87 (161)
T 2grr_A            8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP   87 (161)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCST
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccC
Confidence            4589999999985332     1111     24577777777643     2688899999999999999999765442   


Q ss_pred             -----------ceec--ccCccCcHHHHHHHHHHHH
Q 027371           77 -----------IFNL--KWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -----------~f~~--~W~~~ssL~~v~~qF~~~L   99 (224)
                                 .+.-  .|++..+|..|+...+..|
T Consensus        88 nv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll  123 (161)
T 2grr_A           88 NVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL  123 (161)
T ss_dssp             TBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHH
Confidence                       1111  5999989988877766654

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=95.00  E-value=0.22  Score=41.47  Aligned_cols=92  Identities=16%  Similarity=0.201  Sum_probs=64.7

Q ss_pred             ccCCCchhHHHHHHHHHHhccc---eee----eecCCcc---eEEEEEEeCC----CCEEEEEEEecCCCCCCCCceeec
Q 027371            8 ESANSSSFSRSVYSEIEEVGWE---HLV----RLSEDLK---FLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSISAD   73 (224)
Q Consensus         8 ~~~~~~~fys~li~Eie~iGW~---kl~----~id~~ls---~i~l~~~D~~----gR~H~l~v~l~~~yP~~~P~~~~d   73 (224)
                      .....+.--.+|.+|+.++.=.   .+.    -.+.|+.   ...+.+....    |....++|.+|.+||.+||.|...
T Consensus        23 ~~~~~s~a~~RL~kEl~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~  102 (190)
T 3o2u_A           23 IQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCL  102 (190)
T ss_dssp             SSCCCCHHHHHHHHHHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEECCSSSTTTTCCEEEEEECCTTTTTSCCEEEEC
T ss_pred             CCCCccHHHHHHHHHHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCceeEEe
Confidence            3445566689999999998511   111    1245677   7777776432    688899999999999999998765


Q ss_pred             CCC--------------ceecccCccCcHHHHHHHHHHHH
Q 027371           74 VPY--------------IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        74 lP~--------------~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                      -|.              .+.-.|+|..++..|+...+..|
T Consensus       103 t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll  142 (190)
T 3o2u_A          103 KKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLF  142 (190)
T ss_dssp             SCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             cCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHH
Confidence            442              01126999999988877766555

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=94.93  E-value=0.3  Score=40.30  Aligned_cols=86  Identities=19%  Similarity=0.339  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHHhcccee----ee-e-cCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC------
Q 027371           14 SFSRSVYSEIEEVGWEHL----VR-L-SEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY------   76 (224)
Q Consensus        14 ~fys~li~Eie~iGW~kl----~~-i-d~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~------   76 (224)
                      .-.++|.+|+.++.=+..    +. . +.++...++.+...     .|....++|.+|.+||.+||.|...=|.      
T Consensus         7 ~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~   86 (183)
T 3rz3_A            7 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY   86 (183)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCC
Confidence            446899999999853311    22 2 35788999988743     2688899999999999999998755442      


Q ss_pred             --------cee-------------cccCccCcHHHHHHHHHHHH
Q 027371           77 --------IFN-------------LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 --------~f~-------------~~W~~~ssL~~v~~qF~~~L   99 (224)
                              .+.             -.|+|..++..|+...+..|
T Consensus        87 ~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll  130 (183)
T 3rz3_A           87 ETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL  130 (183)
T ss_dssp             TTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHH
T ss_pred             CCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHH
Confidence                    111             35999888988887777665

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=94.86  E-value=0.24  Score=43.33  Aligned_cols=86  Identities=20%  Similarity=0.308  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHHhccc--------eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC----
Q 027371           14 SFSRSVYSEIEEVGWE--------HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----   76 (224)
Q Consensus        14 ~fys~li~Eie~iGW~--------kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~----   76 (224)
                      .-.++|.+|+.+|.-+        .+.-.+.++......+...     .|....++|.+|.+||.+||.|...=|.    
T Consensus        57 ~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN  136 (253)
T 3e46_A           57 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN  136 (253)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCC
Confidence            3478999999998432        2344567899999998833     2788999999999999999998754431    


Q ss_pred             c------e-----ecccCccCcHHHHHHHHHHHH
Q 027371           77 I------F-----NLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ~------f-----~~~W~~~ssL~~v~~qF~~~L   99 (224)
                      .      +     .-.|+|..+|..|+...+..|
T Consensus       137 V~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll  170 (253)
T 3e46_A          137 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALL  170 (253)
T ss_dssp             BCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHH
T ss_pred             ccCCCCeeecccccCCCCCCCCHHHHHHHHHHHh
Confidence            0      1     127999999988877666555

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=94.76  E-value=0.21  Score=40.36  Aligned_cols=92  Identities=16%  Similarity=0.280  Sum_probs=63.5

Q ss_pred             ccCCCchhHHHHHHHHHHhccce----eee-e-cCCcceEEEEEEeC----CCCEEEEEEEecCCCCCCCCceeecCCC-
Q 027371            8 ESANSSSFSRSVYSEIEEVGWEH----LVR-L-SEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPY-   76 (224)
Q Consensus         8 ~~~~~~~fys~li~Eie~iGW~k----l~~-i-d~~ls~i~l~~~D~----~gR~H~l~v~l~~~yP~~~P~~~~dlP~-   76 (224)
                      .....+.--.+|.+|+.++.-+.    -+. . +.++....+.+-..    .|....++|.++.+||.+||.|...=|. 
T Consensus         8 ~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~   87 (167)
T 3fn1_B            8 STRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIW   87 (167)
T ss_dssp             CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCC
T ss_pred             CccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcc
Confidence            34455667889999999986441    122 2 34577777776322    2678889999999999999998755441 


Q ss_pred             -------------ceec------ccCccCcHHHHHHHHHHHH
Q 027371           77 -------------IFNL------KWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -------------~f~~------~W~~~ssL~~v~~qF~~~L   99 (224)
                                   .+.-      .|++..++..|+...+..|
T Consensus        88 HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll  129 (167)
T 3fn1_B           88 HPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLF  129 (167)
T ss_dssp             CSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTT
T ss_pred             cCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence                         0111      5999989988876666554

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=94.71  E-value=0.32  Score=40.69  Aligned_cols=86  Identities=15%  Similarity=0.255  Sum_probs=61.1

Q ss_pred             hhHHHHHHHHHHhcccee------------------eeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCce
Q 027371           14 SFSRSVYSEIEEVGWEHL------------------VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSI   70 (224)
Q Consensus        14 ~fys~li~Eie~iGW~kl------------------~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~   70 (224)
                      .-.++|.+|+.++.=+..                  .-.+.++...+..+....     |....++|.+|.+||.+||.|
T Consensus        32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V  111 (193)
T 2f4z_A           32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM  111 (193)
T ss_dssp             CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred             HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence            346899999998854321                  224566888888887432     688999999999999999998


Q ss_pred             eecCCC----c------e-----ecccCccCcHHHHHHHHHHHH
Q 027371           71 SADVPY----I------F-----NLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        71 ~~dlP~----~------f-----~~~W~~~ssL~~v~~qF~~~L   99 (224)
                      ...=|.    .      +     .-.|+|..+|..|+...+..|
T Consensus       112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll  155 (193)
T 2f4z_A          112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML  155 (193)
T ss_dssp             EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHH
T ss_pred             EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHH
Confidence            754431    1      0     115999999988877766655

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=94.62  E-value=0.42  Score=38.92  Aligned_cols=84  Identities=23%  Similarity=0.362  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHhccc-----eeeee-cC-C--cceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-----
Q 027371           16 SRSVYSEIEEVGWE-----HLVRL-SE-D--LKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-----   76 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl~~i-d~-~--ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~-----   76 (224)
                      -.+|++|+.++.-+     ..+.. +. +  +...+..+....     |....++|.++.+||.+||.+...=|.     
T Consensus        27 ~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV  106 (160)
T 2a4d_A           27 NFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGV  106 (160)
T ss_dssp             HHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTB
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCE
Confidence            47999999998643     12233 43 3  788888887432     688999999999999999988754331     


Q ss_pred             -----c-----ee--cccCccCcHHHHHHHHHHHH
Q 027371           77 -----I-----FN--LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -----~-----f~--~~W~~~ssL~~v~~qF~~~L   99 (224)
                           .     +.  -.|++..++..|+...+..|
T Consensus       107 ~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll  141 (160)
T 2a4d_A          107 NSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLM  141 (160)
T ss_dssp             CTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred             ECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHH
Confidence                 0     11  26999889988877766655

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=94.47  E-value=0.39  Score=39.65  Aligned_cols=90  Identities=13%  Similarity=0.298  Sum_probs=63.0

Q ss_pred             cCCCchhHHHHHHHHHHhccc--eeee--ecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---
Q 027371            9 SANSSSFSRSVYSEIEEVGWE--HLVR--LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---   76 (224)
Q Consensus         9 ~~~~~~fys~li~Eie~iGW~--kl~~--id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~---   76 (224)
                      ....+.--.+|.+|+.++.=.  .-+.  .+.++....+.+ ...     |....++|.+|.+||.+||.|...=|.   
T Consensus        21 ~~~~~~~~~RL~kEl~~l~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HP   99 (180)
T 2nvu_C           21 SKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHP   99 (180)
T ss_dssp             CCSCCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBT
T ss_pred             cCCccHHHHHHHHHHHhcCCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccC
Confidence            344566789999999998311  1122  246688888776 322     677889999999999999998765442   


Q ss_pred             -----------ceecccCccCcHHHHHHHHHHHH
Q 027371           77 -----------IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -----------~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                                 .+.-.|+|..++..|+...+..|
T Consensus       100 NV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll  133 (180)
T 2nvu_C          100 NIDLEGNVALNILREDWKPVLTINSIIYGLQYLF  133 (180)
T ss_dssp             TBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCcEEcccccccCCCCCCHHHHHHHHHHHH
Confidence                       01126999889988887776655

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=94.35  E-value=0.35  Score=43.83  Aligned_cols=90  Identities=19%  Similarity=0.329  Sum_probs=64.9

Q ss_pred             CCCchhHHHHHHHHHHhccce---------eeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCC
Q 027371           10 ANSSSFSRSVYSEIEEVGWEH---------LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVP   75 (224)
Q Consensus        10 ~~~~~fys~li~Eie~iGW~k---------l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP   75 (224)
                      ..++.-..+|.+|+..+.=+.         +.-.+.++...++.+....     |....++|.+|.+||.+||.|...=|
T Consensus        72 ~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~  151 (323)
T 3ceg_A           72 ANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETT  151 (323)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence            355677899999999985331         1223567888888887533     68899999999999999999986544


Q ss_pred             C----cee----------------------cccCccC-cHHHHHHHHHHHH
Q 027371           76 Y----IFN----------------------LKWSRKS-RLKDLLQQFREHL   99 (224)
Q Consensus        76 ~----~f~----------------------~~W~~~s-sL~~v~~qF~~~L   99 (224)
                      .    .|.                      -.|+|.. +|..|+...+..|
T Consensus       152 ~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL  202 (323)
T 3ceg_A          152 GGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLI  202 (323)
T ss_dssp             TTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHT
T ss_pred             CCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHH
Confidence            1    111                      1598875 7888877766655

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=94.28  E-value=0.22  Score=39.88  Aligned_cols=79  Identities=15%  Similarity=0.282  Sum_probs=55.4

Q ss_pred             HHHHHHHHHh---ccceeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC----c------e
Q 027371           17 RSVYSEIEEV---GWEHLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----I------F   78 (224)
Q Consensus        17 s~li~Eie~i---GW~kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~----~------f   78 (224)
                      ++|.+|+.++   |. .+.-.+.++...++.+...     .|....++|.+|.+||.+||.+...=|.    .      +
T Consensus         5 ~Rl~kEl~~l~~~~~-~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~i   83 (152)
T 2onu_A            5 TRKQCDFTKLIMAGY-DLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSV   83 (152)
T ss_dssp             CHHHHTHHHHHHHTC-CEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBB
T ss_pred             HHHHHHHHhcCcCCC-EEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeE
Confidence            4677777666   33 2334567788888888632     2788999999999999999998754331    0      0


Q ss_pred             e-----cccCccCcHHHHHHHHH
Q 027371           79 N-----LKWSRKSRLKDLLQQFR   96 (224)
Q Consensus        79 ~-----~~W~~~ssL~~v~~qF~   96 (224)
                      .     -.|+|..++..|+..+.
T Consensus        84 Cl~il~~~W~p~~~i~~vl~~ii  106 (152)
T 2onu_A           84 CLDVINQTWTPLYSLVNVFEVFL  106 (152)
T ss_dssp             CHHHHHHHCCTTCCHHHHHHTHH
T ss_pred             ecccccccCCCCCCHHHHHHHHH
Confidence            0     15998888888887653

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=93.94  E-value=0.68  Score=37.72  Aligned_cols=84  Identities=15%  Similarity=0.163  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhcc---------------ceeee--ecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeec
Q 027371           16 SRSVYSEIEEVGW---------------EHLVR--LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISAD   73 (224)
Q Consensus        16 ys~li~Eie~iGW---------------~kl~~--id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~d   73 (224)
                      -.+|.+|+.++.=               -..+.  -+.++...+..+....     |....++|.+|.+||.+||.|...
T Consensus         8 ~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   87 (172)
T 2y9m_A            8 MSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFM   87 (172)
T ss_dssp             HHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred             HHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEe
Confidence            4678888777642               22222  2457888988887433     788999999999999999998765


Q ss_pred             C-----CCc-----------ee-cccCccCcHHHHHHHHHHHH
Q 027371           74 V-----PYI-----------FN-LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        74 l-----P~~-----------f~-~~W~~~ssL~~v~~qF~~~L   99 (224)
                      =     |-.           +. -.|+|..+|..|+...+..|
T Consensus        88 t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll  130 (172)
T 2y9m_A           88 QNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLL  130 (172)
T ss_dssp             TTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHH
T ss_pred             eCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHH
Confidence            5     211           11 26999889988887776655

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=93.86  E-value=0.28  Score=40.63  Aligned_cols=86  Identities=20%  Similarity=0.290  Sum_probs=58.4

Q ss_pred             hhHHHHHHHHHHhccc-eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCC----Ccee----
Q 027371           14 SFSRSVYSEIEEVGWE-HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVP----YIFN----   79 (224)
Q Consensus        14 ~fys~li~Eie~iGW~-kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP----~~f~----   79 (224)
                      .--.+|.+|+.++.=+ .-+....++....+.+...     .|....++|.+|.+||.+||.+...=|    -...    
T Consensus        25 ~a~~RL~kEl~~l~~~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~  104 (179)
T 2z5d_A           25 PGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGT  104 (179)
T ss_dssp             HHHHHHHHHHHHHHHSSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred             HHHHHHHHHHHhcCcCCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCe
Confidence            3567999999987311 1122234677777777642     278899999999999999999875443    1111    


Q ss_pred             -------cccCccCcHHHHHHHHHHHH
Q 027371           80 -------LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        80 -------~~W~~~ssL~~v~~qF~~~L   99 (224)
                             -.|+|..++..|+..|...|
T Consensus       105 ICL~iL~~~WsP~~ti~~iL~s~I~~L  131 (179)
T 2z5d_A          105 VCLDVINQTWTALYDLTNIFESFLPQL  131 (179)
T ss_dssp             BCHHHHHHHCCTTCCTTHHHHTHHHHH
T ss_pred             EeccccccCCCCCCCHHHHHHHHHHHH
Confidence                   15988888888887744433

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=93.13  E-value=0.57  Score=38.34  Aligned_cols=80  Identities=16%  Similarity=0.228  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhccce-eeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----c------ee
Q 027371           16 SRSVYSEIEEVGWEH-LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----I------FN   79 (224)
Q Consensus        16 ys~li~Eie~iGW~k-l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~----~------f~   79 (224)
                      -.+|.+|+..+.-+. -+..+.++....+.+....     |....++|.++.+||.+||.|...=+.    .      +.
T Consensus        14 ~~RL~~El~~l~~~~~~v~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iC   93 (171)
T 1yf9_A           14 NRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVC   93 (171)
T ss_dssp             CHHHHHHHHHHHSSSSCEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBC
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEe
Confidence            378999999876431 1245788999999887432     788999999999999999998754331    0      10


Q ss_pred             -----cccCccCcHHHHHHHH
Q 027371           80 -----LKWSRKSRLKDLLQQF   95 (224)
Q Consensus        80 -----~~W~~~ssL~~v~~qF   95 (224)
                           -.|++..++..|+..+
T Consensus        94 l~iL~~~W~p~~~i~~vL~si  114 (171)
T 1yf9_A           94 LDVINQTWTPMYQLENIFDVF  114 (171)
T ss_dssp             HHHHHHHCCTTCCTHHHHHTH
T ss_pred             ccccccCCCCCCcHHHHHHHH
Confidence                 1688888888887765

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=93.13  E-value=0.21  Score=42.51  Aligned_cols=83  Identities=27%  Similarity=0.418  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhccce-----eeeecC-CcceEEEEEEe---CC--CCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           17 RSVYSEIEEVGWEH-----LVRLSE-DLKFLSFRVID---KK--GRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        17 s~li~Eie~iGW~k-----l~~id~-~ls~i~l~~~D---~~--gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      .+|.+|+.++.-+.     +.-.+. ++...+..+..   +-  |....++|.+|.+||.+||.|...=|.         
T Consensus         5 ~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~   84 (215)
T 1tte_A            5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVT   84 (215)
T ss_dssp             HHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSS
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCC
Confidence            68999999985331     222233 46677766543   21  567789999999999999998754431         


Q ss_pred             ------ceecccCccCcHHHHHHHHHHHH
Q 027371           77 ------IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ------~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                            .+.-.|+|..++..|+...+..|
T Consensus        85 G~ICL~iL~~~WsP~~ti~~VL~sI~sLL  113 (215)
T 1tte_A           85 GAICLDILRNAWSPVITLKSALISLQALL  113 (215)
T ss_dssp             SCCCSSTTTCCSCTTCCHHHHHHHHHHHH
T ss_pred             CEEECccCCCCCCCcCcHHHHHHHHHHHH
Confidence                  01116999989988877766655

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=93.13  E-value=0.74  Score=37.68  Aligned_cols=85  Identities=21%  Similarity=0.322  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHHhccc-----eeeee-cCC---cceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----
Q 027371           15 FSRSVYSEIEEVGWE-----HLVRL-SED---LKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----   76 (224)
Q Consensus        15 fys~li~Eie~iGW~-----kl~~i-d~~---ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~----   76 (224)
                      --.+|.+|+.++.-+     ..+.. +.+   +...+..+....     |....++|.++.+||.+||.+...=|.    
T Consensus        36 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN  115 (170)
T 2hlw_A           36 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG  115 (170)
T ss_dssp             HHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSS
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCC
Confidence            358999999988532     11232 433   788888887432     678899999999999999988654331    


Q ss_pred             -----------cee--cccCccCcHHHHHHHHHHHH
Q 027371           77 -----------IFN--LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -----------~f~--~~W~~~ssL~~v~~qF~~~L   99 (224)
                                 .+.  -.|++..++..|+...+..|
T Consensus       116 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll  151 (170)
T 2hlw_A          116 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLM  151 (170)
T ss_dssp             BCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred             EeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHH
Confidence                       011  26999889988887766665

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=92.82  E-value=0.69  Score=42.51  Aligned_cols=84  Identities=15%  Similarity=0.362  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      -++|.+|+.++.-+     .+.-.+.|+...+..+...     .|....++|.+|.+||.+||.|...=|.         
T Consensus         5 ~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G   84 (399)
T 4ddg_A            5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG   84 (399)
T ss_dssp             HHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCTTC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCCCC
Confidence            47899999998533     1223466788888888743     2688899999999999999998755442         


Q ss_pred             c-----eecccCccCcHHHHHHHHHHHH
Q 027371           77 I-----FNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ~-----f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                      .     +.-.|+|..++..|+...+..|
T Consensus        85 ~iCl~il~~~W~p~~~i~~vL~~i~~ll  112 (399)
T 4ddg_A           85 SISLDILRSQWSPALTISKVLLSICSLL  112 (399)
T ss_dssp             BBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred             eEeCcccccCCCccccHHHHHHHHHHHH
Confidence            0     1127999989988876666555

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=87.65  E-value=1.9  Score=34.72  Aligned_cols=52  Identities=21%  Similarity=0.294  Sum_probs=37.1

Q ss_pred             CCCEEE--EEEEecCCCCCCCCceeecC-------CCce-------e----cccCc-cCcHHHHHHHHHHHHH
Q 027371           49 KGRVHC--MEIQLDKNYPRSPPSISADV-------PYIF-------N----LKWSR-KSRLKDLLQQFREHLE  100 (224)
Q Consensus        49 ~gR~H~--l~v~l~~~yP~~~P~~~~dl-------P~~f-------~----~~W~~-~ssL~~v~~qF~~~Le  100 (224)
                      +|..+.  |.|-++.+||.+||.|.+.-       +.+.       .    -+|++ .++|.++++..+.++.
T Consensus        65 ~g~~y~iPi~Iwlp~~YP~~pP~vfv~pt~~m~I~~~~~Vd~~G~i~lpyL~~W~~~~snL~~ll~~l~~~F~  137 (146)
T 3obq_A           65 RGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFG  137 (146)
T ss_dssp             SSCEEEEEEEEECCTTTTTSCCEEEECCCTTEEECCBTTBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHH
T ss_pred             cCccccceEEEEeCccCCCCCCEEEEeCCCCCEECCCCCCCCCCCEecccccccCCCCCCHHHHHHHHHHHHh
Confidence            355555  69999999999999998754       2111       0    17986 7889888877776654

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=87.18  E-value=7.6  Score=29.49  Aligned_cols=63  Identities=16%  Similarity=0.226  Sum_probs=39.9

Q ss_pred             CCCchhHHHHHHHHHHhc---cceeeeecCC-------cceEEEEEEe--CCC----CEEEEEEEecCCCCCCCCceee
Q 027371           10 ANSSSFSRSVYSEIEEVG---WEHLVRLSED-------LKFLSFRVID--KKG----RVHCMEIQLDKNYPRSPPSISA   72 (224)
Q Consensus        10 ~~~~~fys~li~Eie~iG---W~kl~~id~~-------ls~i~l~~~D--~~g----R~H~l~v~l~~~yP~~~P~~~~   72 (224)
                      .+...+-.....||++|.   =+.+..++..       -..+++++.-  ..+    -.-.|.|.+|.+||.++|.+..
T Consensus         6 ~~~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l   84 (137)
T 1ukx_A            6 SGMESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDL   84 (137)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEE
T ss_pred             CCCcchHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEE
Confidence            344577778888997774   2444445532       2456666652  111    2345788889999999998764

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.09  E-value=4.2  Score=30.80  Aligned_cols=60  Identities=20%  Similarity=0.271  Sum_probs=36.9

Q ss_pred             hhHHHHHHHHHHhc--c-c--eeeeec---CCcceEEEEEEeCC----CCEEEEEEEecCCCCCCCCceeec
Q 027371           14 SFSRSVYSEIEEVG--W-E--HLVRLS---EDLKFLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSISAD   73 (224)
Q Consensus        14 ~fys~li~Eie~iG--W-~--kl~~id---~~ls~i~l~~~D~~----gR~H~l~v~l~~~yP~~~P~~~~d   73 (224)
                      .+......||++|.  . +  .+..++   .+...+++++....    .-.-.|.|.+|.+||.++|.+...
T Consensus         7 ~~~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~   78 (128)
T 2ebk_A            7 GMAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISIN   78 (128)
T ss_dssp             CSCHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred             hHHHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence            34455677887763  1 2  333333   22346777765332    234568899999999999987754

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.66  E-value=3.2  Score=31.36  Aligned_cols=59  Identities=15%  Similarity=0.289  Sum_probs=40.1

Q ss_pred             hhHHHHHHHHHHhc---cceeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceee
Q 027371           14 SFSRSVYSEIEEVG---WEHLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISA   72 (224)
Q Consensus        14 ~fys~li~Eie~iG---W~kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~   72 (224)
                      .+-.....||++|.   =+.+..++..-..+++++...     ..-.-.|.|.+|.+||.++|.+..
T Consensus        10 ~~~e~q~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l   76 (128)
T 2ebm_A           10 DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEI   76 (128)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEE
T ss_pred             ChHHHHHHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEE
Confidence            46677788987774   245555555446667776532     123456899999999999998764

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=80.78  E-value=9.2  Score=29.17  Aligned_cols=60  Identities=12%  Similarity=0.261  Sum_probs=38.0

Q ss_pred             hhHHHHHHHHHHhc---cceeeeecC--------CcceEEEEEEeCC----CCEEEEEEEecCCCCCCCCceeec
Q 027371           14 SFSRSVYSEIEEVG---WEHLVRLSE--------DLKFLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSISAD   73 (224)
Q Consensus        14 ~fys~li~Eie~iG---W~kl~~id~--------~ls~i~l~~~D~~----gR~H~l~v~l~~~yP~~~P~~~~d   73 (224)
                      .|-..-..||++|.   =+.+..++.        .-..+++++....    .-.-.|.|.+|.+||.++|.+...
T Consensus        10 ~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~   84 (138)
T 2yz0_A           10 QYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFK   84 (138)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSCSSCCCEEEEEEECCSSTTSSCCEEEEE
T ss_pred             chHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCCCCCceEEEEEEECCCCCCCCCCeEEEe
Confidence            44555677887664   234444543        2356677766322    234468888999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	96.86
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	96.69
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	96.68
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	96.6
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	96.44
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	96.3
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	96.17
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	96.16
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	96.12
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	96.05
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	95.96
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	95.95
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	95.79
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	95.71
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	95.47
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	95.31
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	95.24
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	95.21
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	95.09
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	95.07
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	94.97
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	94.92
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	94.53
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	94.47
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	94.42
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	94.06
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.99
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	91.73
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	91.62
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	88.4
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	81.78

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.003  Score=46.71  Aligned_cols=83  Identities=10%  Similarity=0.181  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhccc----eee---eecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceee--cCC-Cc----
Q 027371           17 RSVYSEIEEVGWE----HLV---RLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISA--DVP-YI----   77 (224)
Q Consensus        17 s~li~Eie~iGW~----kl~---~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~--dlP-~~----   77 (224)
                      +||.+|+.++.=+    .-+   ..+.++...++.+....     |....++|.+|.+||.+||.+..  ..+ ..    
T Consensus         6 kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpnv~   85 (117)
T d2a7la1           6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVY   85 (117)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBC
T ss_pred             HHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccccCc
Confidence            7899999998422    111   23457888888887543     58889999999999999998864  221 11    


Q ss_pred             ---------eecccCccCcHHHHHHHHHHHH
Q 027371           78 ---------FNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        78 ---------f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                               +.=.|+|..++.+|+.+++..|
T Consensus        86 ~~G~iCl~~l~~~Wsp~~ti~~vl~~i~~lL  116 (117)
T d2a7la1          86 SNGHICLSILTEDWSPALSVQSVCLSIISML  116 (117)
T ss_dssp             TTCBBCCGGGTTTCCTTSCHHHHHHHHHHHT
T ss_pred             CCCeEEeecCcCCCCCcCcHHHHHHHHHHHh
Confidence                     1127999999999999888764

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0041  Score=48.63  Aligned_cols=85  Identities=18%  Similarity=0.391  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHh--------ccceeeeecCCcceEEEEEEe--CC--------------C-CEEEEEEEecCCCCCCCCce
Q 027371           16 SRSVYSEIEEV--------GWEHLVRLSEDLKFLSFRVID--KK--------------G-RVHCMEIQLDKNYPRSPPSI   70 (224)
Q Consensus        16 ys~li~Eie~i--------GW~kl~~id~~ls~i~l~~~D--~~--------------g-R~H~l~v~l~~~yP~~~P~~   70 (224)
                      -+||++|+.+|        |.-.+.-.+.|+....+++..  ..              | ....++|+++.+||.+||.+
T Consensus         6 ~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~PP~v   85 (162)
T d1zuoa1           6 SDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFV   85 (162)
T ss_dssp             HHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEE
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhhcceE
Confidence            37899999888        333344456678877887753  11              1 23578999999999999998


Q ss_pred             eecCCC----------ce--e-c---ccCccCcHHHHHHHHHHHHH
Q 027371           71 SADVPY----------IF--N-L---KWSRKSRLKDLLQQFREHLE  100 (224)
Q Consensus        71 ~~dlP~----------~f--~-~---~W~~~ssL~~v~~qF~~~Le  100 (224)
                      ..-=|.          .+  . +   .|+|..++..|+.+++..|-
T Consensus        86 ~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~IL~~i~~ll~  131 (162)
T d1zuoa1          86 RVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLV  131 (162)
T ss_dssp             EEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEeeccccccCCceeecccccCCCCCCcccHHHHHHHHHHHHc
Confidence            765552          01  1 1   49999999999999988774

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=96.68  E-value=0.0087  Score=46.35  Aligned_cols=83  Identities=13%  Similarity=0.230  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCCce--------
Q 027371           17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIF--------   78 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~~f--------   78 (224)
                      +||.+|+.++.=+     .+.-.+.|+.+..+.+...     .|..-.++|.+|.+||.+||.+...-|...        
T Consensus         4 kRl~kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~g~~~   83 (157)
T d2f4wa1           4 QRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLC   83 (157)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTSCBC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCCCCee
Confidence            6889999888422     4555677788888888632     368889999999999999999987666211        


Q ss_pred             ----ec---ccCccCcHHHHHHHHHHHH
Q 027371           79 ----NL---KWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        79 ----~~---~W~~~ssL~~v~~qF~~~L   99 (224)
                          .+   .|++..+|..|+.+++..|
T Consensus        84 ~~~l~~~~~~Wsp~~ti~~il~~i~~ll  111 (157)
T d2f4wa1          84 LSITDFHPDTWNPAWSVSTILTGLLSFM  111 (157)
T ss_dssp             ----------CCTTCCHHHHHHHHHHHH
T ss_pred             eeeccccCCCCCccCcHHHHHHHHHHHc
Confidence                11   5999999999999888777

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=96.60  E-value=0.013  Score=42.93  Aligned_cols=82  Identities=12%  Similarity=0.199  Sum_probs=58.5

Q ss_pred             HHHHHHHHhccc----eeee-ecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeec--CCCce-------
Q 027371           18 SVYSEIEEVGWE----HLVR-LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISAD--VPYIF-------   78 (224)
Q Consensus        18 ~li~Eie~iGW~----kl~~-id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~d--lP~~f-------   78 (224)
                      ||.+|+.++.=+    ..+. .+.|+....+.+....     |....++|.+|.+||.+||.+..-  .....       
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~G~   81 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD   81 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSB
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECCCCe
Confidence            678888888322    2233 3556888888887443     568899999999999999998732  21111       


Q ss_pred             ------ecccCccCcHHHHHHHHHHHH
Q 027371           79 ------NLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        79 ------~~~W~~~ssL~~v~~qF~~~L   99 (224)
                            .-.|++..++..|+.+.+..|
T Consensus        82 iCl~il~~~Wsp~~ti~~vl~~i~~ll  108 (109)
T d2fo3a1          82 ICLSLLGDDYNPSLSISGLVLSIISML  108 (109)
T ss_dssp             BCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             EEeecccCCCCccCCHHHHHHHHHHHh
Confidence                  127999999999998887765

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=96.44  E-value=0.011  Score=45.30  Aligned_cols=83  Identities=22%  Similarity=0.321  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhccce-----eeee----cCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC------
Q 027371           17 RSVYSEIEEVGWEH-----LVRL----SEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY------   76 (224)
Q Consensus        17 s~li~Eie~iGW~k-----l~~i----d~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~------   76 (224)
                      .||++|++++.-+.     ...+    |.++..-++.+....     |-...++|.++.+||.+||.+..-=|.      
T Consensus         8 ~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnV~   87 (139)
T d2a4da1           8 FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVN   87 (139)
T ss_dssp             HHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBC
T ss_pred             HHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCcccccCc
Confidence            58999999985431     1111    335888888877443     567789999999999999998743331      


Q ss_pred             ---------ceec--ccCccCcHHHHHHHHHHHH
Q 027371           77 ---------IFNL--KWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ---------~f~~--~W~~~ssL~~v~~qF~~~L   99 (224)
                               .+..  .|++..+|..|+.+++..|
T Consensus        88 ~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL  121 (139)
T d2a4da1          88 SSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLM  121 (139)
T ss_dssp             TTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCEEcceecCcccCCCccCcHHHHHHHHHHHH
Confidence                     1111  7999889988888777765

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=96.30  E-value=0.023  Score=43.48  Aligned_cols=84  Identities=15%  Similarity=0.225  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhcc-----ceeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           16 SRSVYSEIEEVGW-----EHLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        16 ys~li~Eie~iGW-----~kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      .+||.+|+.++.-     =.+.-.+.|+...+..+....     |..-.++|.++.+||.++|.+...-|.         
T Consensus         3 ~kRl~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G   82 (146)
T d1i7ka_           3 GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQG   82 (146)
T ss_dssp             HHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTC
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCCCCC
Confidence            5799999999842     255556777888888887544     458899999999999999998866552         


Q ss_pred             -----ceecccCccCcHHHHHHHHHHHH
Q 027371           77 -----IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -----~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                           .+.-.|++..++.+|+..++..|
T Consensus        83 ~icl~~l~~~W~p~~~i~~il~~i~~ll  110 (146)
T d1i7ka_          83 NISLDILKEKWSALYDVRTILLSIQSLL  110 (146)
T ss_dssp             BBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             ccccccccccCCCCcCHHHHHHHHHHHH
Confidence                 11227988888999888877665

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.17  E-value=0.033  Score=42.68  Aligned_cols=85  Identities=20%  Similarity=0.316  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhc--------cceeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC------
Q 027371           16 SRSVYSEIEEVG--------WEHLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY------   76 (224)
Q Consensus        16 ys~li~Eie~iG--------W~kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~------   76 (224)
                      .+||.+|+.++.        +-.+.-.|.|+....+.+....     |....++|.++.+||.+||.+..-=|.      
T Consensus         6 ~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~   85 (154)
T d2bepa1           6 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS   85 (154)
T ss_dssp             HHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCCCCCee
Confidence            467777777762        2244556777889888887532     678899999999999999988755441      


Q ss_pred             ---------ceecccCccCcHHHHHHHHHHHHH
Q 027371           77 ---------IFNLKWSRKSRLKDLLQQFREHLE  100 (224)
Q Consensus        77 ---------~f~~~W~~~ssL~~v~~qF~~~Le  100 (224)
                               .+.=.|++..+|.+|+..++..|.
T Consensus        86 ~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~  118 (154)
T d2bepa1          86 SVTGAICLDILKDQWAAAMTLRTVLLSLQALLA  118 (154)
T ss_dssp             TTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCccccccccccCCCcCCHHHHHHHHHHHHc
Confidence                     001168888899998887776663

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=96.16  E-value=0.028  Score=41.72  Aligned_cols=82  Identities=17%  Similarity=0.299  Sum_probs=60.5

Q ss_pred             HHHHHHHHhccc-----eeeeecC-CcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC--c-------
Q 027371           18 SVYSEIEEVGWE-----HLVRLSE-DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--I-------   77 (224)
Q Consensus        18 ~li~Eie~iGW~-----kl~~id~-~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~--~-------   77 (224)
                      +|.+|+.++.-+     .+...|. |+...++.+...     .|..-.++|+++.+||.+||.+...=|.  +       
T Consensus         3 ~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~   82 (125)
T d2awfa1           3 LLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGD   82 (125)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCB
T ss_pred             hHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCCCCE
Confidence            567788887422     3334454 699999998853     2778899999999999999998765441  0       


Q ss_pred             e--e-c---------------ccCccCcHHHHHHHHHHHH
Q 027371           78 F--N-L---------------KWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        78 f--~-~---------------~W~~~ssL~~v~~qF~~~L   99 (224)
                      +  . +               .|+|..++..|+.+++..|
T Consensus        83 iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll  122 (125)
T d2awfa1          83 VCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML  122 (125)
T ss_dssp             BCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHH
T ss_pred             EEeccccCccccccccccccCCcCccCcHHHHHHHHHHHh
Confidence            1  1 1               3999999999999988766

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=96.12  E-value=0.03  Score=42.64  Aligned_cols=83  Identities=25%  Similarity=0.414  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhccc-----eeeeec-CCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           17 RSVYSEIEEVGWE-----HLVRLS-EDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id-~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      +||.+|+.++.=+     .+...+ .++....+.+.-.     .|..-.++|.+|.+||.+||.+...=+.         
T Consensus         4 kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~~   83 (149)
T d1fzya_           4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVT   83 (149)
T ss_dssp             HHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTT
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCcccCCc
Confidence            5899999998533     222234 5688888888743     3668999999999999999998754331         


Q ss_pred             ------ceecccCccCcHHHHHHHHHHHH
Q 027371           77 ------IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ------~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                            .+.-.|++..+|.+|+...+.+|
T Consensus        84 ~~~~~~~~~~~W~p~~ti~~il~~i~~ll  112 (149)
T d1fzya_          84 GAICLDILKNAWSPVITLKSALISLQALL  112 (149)
T ss_dssp             CCBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             ceeechhhcccCCCcCCHHHHHHHHHHHH
Confidence                  01115999899998887776666

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=96.05  E-value=0.033  Score=42.79  Aligned_cols=89  Identities=21%  Similarity=0.361  Sum_probs=66.3

Q ss_pred             CCchhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----
Q 027371           11 NSSSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----   76 (224)
Q Consensus        11 ~~~~fys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~----   76 (224)
                      -|++-.++|.+|+.++--+     .+.-.+.|+...++.+.-..     |....+.|.++.+||.++|.+..-=|.    
T Consensus         3 ~~~~~~kRl~kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   82 (151)
T d1zdna1           3 LPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPN   82 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCCce
Confidence            3667789999999999432     23334567999998887544     456889999999999999998755441    


Q ss_pred             ----------ceecccCccCcHHHHHHHHHHHH
Q 027371           77 ----------IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ----------~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                                .+.-.|++..+|..|+..++..|
T Consensus        83 I~~~G~ic~~~l~~~W~p~~~l~~il~~i~~~l  115 (151)
T d1zdna1          83 VGANGEICVNVLKRDWTAELGIRHVLLTIKCLL  115 (151)
T ss_dssp             BCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHH
T ss_pred             ecCCCCcccccccccCCccccHHHHHHHHHHHH
Confidence                      01127998888999888877776

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=95.96  E-value=0.038  Score=42.64  Aligned_cols=83  Identities=16%  Similarity=0.283  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhccc-----eeeeec-CCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           17 RSVYSEIEEVGWE-----HLVRLS-EDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id-~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      +||.+|+.++-=+     .+.-.+ .|+....+.+...     .|....++|.+|.+||.+||.+...-+.         
T Consensus         6 kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G   85 (164)
T d2ucza_           6 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNG   85 (164)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTS
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceeceEcCCC
Confidence            6899999998433     223233 5788888888743     4789999999999999999988865552         


Q ss_pred             c--ee----------------cccCccCcHHHHHHHHHHHH
Q 027371           77 I--FN----------------LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ~--f~----------------~~W~~~ssL~~v~~qF~~~L   99 (224)
                      .  +.                -.|++..+|..|+..++..|
T Consensus        86 ~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll  126 (164)
T d2ucza_          86 EVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSML  126 (164)
T ss_dssp             BBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHH
T ss_pred             CeeeccccCccccccccccccccCCccccHHHHHHHHHHHH
Confidence            0  00                14888889988888777655

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=95.95  E-value=0.039  Score=42.02  Aligned_cols=83  Identities=19%  Similarity=0.332  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhccce------eeeecC---CcceEEEEEE--eC---CCCEEEEEEEecCCCCCCCCceeecCCC------
Q 027371           17 RSVYSEIEEVGWEH------LVRLSE---DLKFLSFRVI--DK---KGRVHCMEIQLDKNYPRSPPSISADVPY------   76 (224)
Q Consensus        17 s~li~Eie~iGW~k------l~~id~---~ls~i~l~~~--D~---~gR~H~l~v~l~~~yP~~~P~~~~dlP~------   76 (224)
                      .||++|++++.-+.      ..-.+.   ++.+-++.+.  +.   .|....++|.++.+||.+||.+..-=|.      
T Consensus         7 ~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~HpnV~   86 (136)
T d1jatb_           7 FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVN   86 (136)
T ss_dssp             HHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBC
T ss_pred             HHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccccccc
Confidence            48999998885432      112333   2776666664  22   4788899999999999999998854441      


Q ss_pred             --------ce-e-cccCccCcHHHHHHHHHHHH
Q 027371           77 --------IF-N-LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 --------~f-~-~~W~~~ssL~~v~~qF~~~L   99 (224)
                              .+ . -.|++..+|..|+...+..|
T Consensus        87 ~~~G~icl~~l~~~~Wsp~~ti~~IL~~i~~lL  119 (136)
T d1jatb_          87 PTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEM  119 (136)
T ss_dssp             TTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred             cCCCeEECCCCcccCcCccCcHHHHHHHHHHHH
Confidence                    11 1 16999889999888877776

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=95.79  E-value=0.019  Score=44.12  Aligned_cols=84  Identities=14%  Similarity=0.356  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      =+||++|+.++.=+     .+.-.+.++....+.+....     |-.-.++|.+|.+||.++|.+...=+.         
T Consensus         5 ~rRl~~E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~G   84 (152)
T d1jata_           5 PKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLG   84 (152)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCCCCC
Confidence            36999999998533     34456677888888888644     346689999999999999988755441         


Q ss_pred             -----ceecccCccCcHHHHHHHHHHHH
Q 027371           77 -----IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -----~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                           .+.-.|++..+|..|+..++.+|
T Consensus        85 ~icl~~~~~~W~p~~~i~~il~~i~~ll  112 (152)
T d1jata_          85 RICLDVLKTNWSPALQIRTVLLSIQALL  112 (152)
T ss_dssp             CBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CeeeccccccCCchhHHHHHHHHHHHHH
Confidence                 11227888888888887766665

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=95.71  E-value=0.07  Score=41.08  Aligned_cols=86  Identities=16%  Similarity=0.293  Sum_probs=62.6

Q ss_pred             hhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-------
Q 027371           14 SFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-------   76 (224)
Q Consensus        14 ~fys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~-------   76 (224)
                      +-.+||.+|+.+|.-+     .+.--+.|+...++.+....     |..-.++|.++.+||.++|.+...-+.       
T Consensus         9 ~~~kRl~kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   88 (156)
T d2e2ca_           9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ   88 (156)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             hHHHHHHHHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCCCCCC
Confidence            4477999999998322     33334567889998887543     567789999999999999998865441       


Q ss_pred             -------ceecccCccCcHHHHHHHHHHHH
Q 027371           77 -------IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -------~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                             .+.-.|++..+|.+|+..++..|
T Consensus        89 ~G~icl~~l~~~Wsp~~~i~~vl~~i~~ll  118 (156)
T d2e2ca_          89 SGNICLDILKENWTASYDVRTILLSLQSLL  118 (156)
T ss_dssp             TCBBCCGGGTTTCCTTCCHHHHHHHHHHHT
T ss_pred             CCCccccccCCCCCCcccHHHHHHHHHHHH
Confidence                   11127998889988887776554

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=95.47  E-value=0.11  Score=39.38  Aligned_cols=83  Identities=18%  Similarity=0.336  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371           17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~----------   76 (224)
                      +||++|+.++.=+     .+.-.+.|+....+.+.-..     |..-.++|.+|.+||.++|.+...=|.          
T Consensus         5 kRl~kEl~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G~   84 (149)
T d1j7db_           5 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR   84 (149)
T ss_dssp             HHHHHHHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCB
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECCCCc
Confidence            5899999998433     34445567888888887432     667899999999999999988865552          


Q ss_pred             ----ceecccCccCcHHHHHHHHHHHH
Q 027371           77 ----IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ----~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                          .+.-.|++..++.+|+..++..|
T Consensus        85 icl~~l~~~w~p~~~i~~il~~i~~ll  111 (149)
T d1j7db_          85 ICLDILKDKWSPALQIRTVLLSIQALL  111 (149)
T ss_dssp             BCCGGGTTSCCTTSCHHHHHHHHHHHH
T ss_pred             EehHHhcCCCCCCccHHHHHHHHHHHH
Confidence                11126888888888876666554

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.31  E-value=0.092  Score=40.63  Aligned_cols=83  Identities=16%  Similarity=0.311  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhc-cce-----------------eeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeec
Q 027371           17 RSVYSEIEEVG-WEH-----------------LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISAD   73 (224)
Q Consensus        17 s~li~Eie~iG-W~k-----------------l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~d   73 (224)
                      +||++|+.+|. +++                 +.-+++|+..-+..+....     |..-.++|.+|.+||.++|.+...
T Consensus         4 ~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~F~   83 (161)
T d2f4za1           4 ARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFV   83 (161)
T ss_dssp             HHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             hHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEEec
Confidence            57888888873 221                 2224566777777777433     568899999999999999998754


Q ss_pred             CCC---------------ceecccCccCcHHHHHHHHHHHH
Q 027371           74 VPY---------------IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        74 lP~---------------~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                      -|.               .+.-.|++..+|.+|+...+..|
T Consensus        84 t~i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll  124 (161)
T d2f4za1          84 TKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML  124 (161)
T ss_dssp             SCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHH
Confidence            331               11126898888888777665554

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=95.24  E-value=0.091  Score=40.13  Aligned_cols=84  Identities=17%  Similarity=0.208  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      +.+|.+|+.++.-+     .+.-.+.|+...++.+...     .|..-.++|.++.+||..||.+...=|.         
T Consensus         6 ~~~L~kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~   85 (148)
T d1yrva1           6 YLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHT   85 (148)
T ss_dssp             HHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTT
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCceecCc
Confidence            57899999998433     3344667788888888843     2677799999999999999998765441         


Q ss_pred             -ce--e-----cccCccCcHHHHHHHHHHHH
Q 027371           77 -IF--N-----LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -~f--~-----~~W~~~ssL~~v~~qF~~~L   99 (224)
                       .+  .     -.|++..+|.+|+..++.+|
T Consensus        86 G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll  116 (148)
T d1yrva1          86 GQPCIDFLDNPEKWNTNYTLSSILLALQVML  116 (148)
T ss_dssp             CCBCCHHHHCGGGCCTTCCHHHHHHHHHHHH
T ss_pred             ccccccccCchhhcCccccHHHHHHHHHHHH
Confidence             11  0     16888888888887777655

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=95.21  E-value=0.083  Score=39.69  Aligned_cols=84  Identities=19%  Similarity=0.411  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371           16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~---------   76 (224)
                      .++|.+|+.+|.=+     .+.-.++|+....+.+.-..     |-.-.++|.+|.+||.+||.+...=|.         
T Consensus         3 ~kRL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G   82 (147)
T d1z2ua1           3 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG   82 (147)
T ss_dssp             HHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeECCCC
Confidence            36899999998533     33445667778888876433     567789999999999999988765551         


Q ss_pred             -----ceecccCccCcHHHHHHHHHHHH
Q 027371           77 -----IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 -----~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                           .+.-.|++..++.+|+..++..|
T Consensus        83 ~iCl~~l~~~w~p~~~i~~Il~~i~~ll  110 (147)
T d1z2ua1          83 SICLDILRSQWSPALTISKVLLSICSLL  110 (147)
T ss_dssp             BBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CEeeehhcccCCCCCCHHHHHHHHHHHh
Confidence                 11237888888888887666655

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=95.09  E-value=0.083  Score=40.02  Aligned_cols=83  Identities=13%  Similarity=0.252  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhccc-----eeeeecC-CcceEEEEEEeC----CCCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371           17 RSVYSEIEEVGWE-----HLVRLSE-DLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id~-~ls~i~l~~~D~----~gR~H~l~v~l~~~yP~~~P~~~~dlP~----------   76 (224)
                      .||.+|+.+|.=+     .++..|+ ++..-.+.+.-.    .|....++|.++.+||.+||.+...=|.          
T Consensus         3 ~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~iigp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~G~   82 (150)
T d1wzva1           3 MRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQ   82 (150)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCB
T ss_pred             HHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEECCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECCCCC
Confidence            4788999988433     2344543 555445443211    2567899999999999999998865552          


Q ss_pred             ---c-ee-cccCccCcHHHHHHHHHHHH
Q 027371           77 ---I-FN-LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ---~-f~-~~W~~~ssL~~v~~qF~~~L   99 (224)
                         . +. =.|++..++.+|+..++.+|
T Consensus        83 icl~~l~~~~W~p~~~i~~il~~i~~ll  110 (150)
T d1wzva1          83 ICLPIISSENWKPCTKTCQVLEALNVLV  110 (150)
T ss_dssp             CCCGGGCTTTCCTTCCHHHHHHHHHHHH
T ss_pred             cccccccccCCCchhHHHHHHHHHHHHH
Confidence               1 11 16898889999988877766

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=95.07  E-value=0.12  Score=39.05  Aligned_cols=83  Identities=16%  Similarity=0.299  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCCC-----CEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371           17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKKG-----RVHCMEIQLDKNYPRSPPSISADVPY----------   76 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~g-----R~H~l~v~l~~~yP~~~P~~~~dlP~----------   76 (224)
                      +||.+|+.+|.-+     .+.-.+.++....+.+....|     -.-.++|.++.+||.+||.+...-|.          
T Consensus         5 ~Rl~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~~~g~   84 (154)
T d1yh2a1           5 SRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGR   84 (154)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCB
T ss_pred             HHHHHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcCCCCC
Confidence            6889999888533     333445668899999986665     58899999999999999999865552          


Q ss_pred             ----cee----cccCccCcHHHHHHHHHHHH
Q 027371           77 ----IFN----LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ----~f~----~~W~~~ssL~~v~~qF~~~L   99 (224)
                          .+.    -.|++..++..|+...+..|
T Consensus        85 icl~~l~~~~~~~w~p~~~i~~il~~i~~ll  115 (154)
T d1yh2a1          85 ICLDVLKLPPKGAWRPSLNIATVLTSIQLLM  115 (154)
T ss_dssp             BCCGGGSCTTTSCCCTTSCHHHHHHHHHHHH
T ss_pred             cccccccCCccccCCccccHHHHHHHHHHHh
Confidence                111    15787778877776665544

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=94.97  E-value=0.055  Score=40.89  Aligned_cols=83  Identities=18%  Similarity=0.345  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhccc-----eeeeecC-CcceEEEEEE--eC--CCCEEEEEEEecCCCCCCCCceeecCCC---------c
Q 027371           17 RSVYSEIEEVGWE-----HLVRLSE-DLKFLSFRVI--DK--KGRVHCMEIQLDKNYPRSPPSISADVPY---------I   77 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id~-~ls~i~l~~~--D~--~gR~H~l~v~l~~~yP~~~P~~~~dlP~---------~   77 (224)
                      +||++|+++|.-+     ..+.+|. ++....+.+-  |+  .|....+.|.+|.+||.+||.+...-|.         .
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~igp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~   81 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQ   81 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCB
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEECCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCccCCc
Confidence            4789999999655     3355544 5777777652  22  1567889999999999999999755441         0


Q ss_pred             e-----e-cccCccCcHHHHHHHHHHHH
Q 027371           78 F-----N-LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        78 f-----~-~~W~~~ssL~~v~~qF~~~L   99 (224)
                      +     . -.|++..++.+|+..++..|
T Consensus        82 icl~~l~~~~w~p~~~i~~il~~i~~ll  109 (144)
T d1c4zd_          82 VCLPVISAENWKPATKTDQVIQSLIALV  109 (144)
T ss_dssp             BCCTTTSSSSCCTTCCHHHHHHHHHHHH
T ss_pred             cccccccCCCCCCcccHHHHHHHHHHHH
Confidence            0     1 15888889999888777665

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=94.92  E-value=0.1  Score=40.18  Aligned_cols=84  Identities=13%  Similarity=0.334  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhccc---eeeeec-CCcceEEEEEEeC----CCCEEEEEEEecCCCCCCCCceeecCCC-----------
Q 027371           16 SRSVYSEIEEVGWE---HLVRLS-EDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPY-----------   76 (224)
Q Consensus        16 ys~li~Eie~iGW~---kl~~id-~~ls~i~l~~~D~----~gR~H~l~v~l~~~yP~~~P~~~~dlP~-----------   76 (224)
                      ..||.+|+.+|-=.   .+...+ .++....+.+--.    .|....++|.++.+||.+||.+...=|.           
T Consensus         5 ~~Rl~kEl~~l~~~~~~~i~~~~~~~l~~w~~~i~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv~~~G~i   84 (157)
T d1y8xa1           5 QLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNV   84 (157)
T ss_dssp             HHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBB
T ss_pred             HHHHHHHHHHhCCCCCCcEEEcCCCcceEEEEEECCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCcccccccee
Confidence            46889999988532   222223 5577777766322    2778999999999999999988764442           


Q ss_pred             ---ceecccCccCcHHHHHHHHHHHH
Q 027371           77 ---IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ---~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                         .+.-.|++..+|.+|+...+..|
T Consensus        85 c~~~~~~~W~p~~~i~~il~~I~~ll  110 (157)
T d1y8xa1          85 CLNILREDWKPVLTINSIIYGLQYLF  110 (157)
T ss_dssp             CCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             eeeecccCCCCCCcHHHHHHHHHHHH
Confidence               01127999889988887766665

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=94.53  E-value=0.098  Score=39.62  Aligned_cols=83  Identities=12%  Similarity=0.308  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371           17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~----------   76 (224)
                      +||.+|+.++.=+     .+.-.+.++....+.+.-..     |-.-.++|.+|.+||..||.+...=|.          
T Consensus         6 rRl~~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~~G~   85 (149)
T d1z3da1           6 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGS   85 (149)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCB
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeEcCCCC
Confidence            8999999998422     33445666777777776322     456789999999999999988755442          


Q ss_pred             ----ceecccCccCcHHHHHHHHHHHH
Q 027371           77 ----IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ----~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                          .+.-.|++..+|.+|+...+..|
T Consensus        86 iCl~~l~~~w~p~~~i~~il~~i~~ll  112 (149)
T d1z3da1          86 ICLDILQNRWSPTYDVAAILTSIQSLL  112 (149)
T ss_dssp             BCCGGGTTSCCTTCCHHHHHHHHHHTT
T ss_pred             EEeccccccCCCCCCHHHHHHHHHHHh
Confidence                11237888889988877766544

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=94.47  E-value=0.14  Score=39.12  Aligned_cols=83  Identities=14%  Similarity=0.263  Sum_probs=58.0

Q ss_pred             HHHHHHHHhccc----eeee-ec-CCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-ceec-----
Q 027371           18 SVYSEIEEVGWE----HLVR-LS-EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-IFNL-----   80 (224)
Q Consensus        18 ~li~Eie~iGW~----kl~~-id-~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~-~f~~-----   80 (224)
                      +|.+|+.++--+    -.+. .+ .|+...++.+....     |-.-.++|.+|.+||..||.+...=|. ..++     
T Consensus         4 ~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~G~   83 (161)
T d1pzva_           4 LLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGN   83 (161)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCTTSB
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCCCCc
Confidence            577888887322    2232 34 46888888887533     556789999999999999988755442 1111     


Q ss_pred             ---------------------ccCccCcHHHHHHHHHHHHH
Q 027371           81 ---------------------KWSRKSRLKDLLQQFREHLE  100 (224)
Q Consensus        81 ---------------------~W~~~ssL~~v~~qF~~~Le  100 (224)
                                           .|++..++.+|+..++..|.
T Consensus        84 vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~  124 (161)
T d1pzva_          84 VCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT  124 (161)
T ss_dssp             BCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHH
T ss_pred             cchhhcCCcccccccccccccccCccccHHHHHHHHHHHHh
Confidence                                 39988899999888877663

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=94.42  E-value=0.22  Score=37.47  Aligned_cols=84  Identities=15%  Similarity=0.323  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-c--------
Q 027371           17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-I--------   77 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~-~--------   77 (224)
                      +||.+|+.++.-+     .+.-.+.++....+.+.-..     |-...+.|.+|.+||.+||.+...=+. .        
T Consensus         5 kRi~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~~G~   84 (148)
T d1y6la_           5 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGV   84 (148)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCB
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceECCCCe
Confidence            6899999998433     45556677888888876522     467899999999999999998754441 0        


Q ss_pred             e-----ecccCccCcHHHHHHHHHHHHH
Q 027371           78 F-----NLKWSRKSRLKDLLQQFREHLE  100 (224)
Q Consensus        78 f-----~~~W~~~ssL~~v~~qF~~~Le  100 (224)
                      +     .-.|++..+|.+|+..++..|.
T Consensus        85 iCl~~l~~~W~p~~~l~~il~~i~~ll~  112 (148)
T d1y6la_          85 ICLDILKDNWSPALTISKVLLSICSLLT  112 (148)
T ss_dssp             BCCGGGTTTCCTTCCHHHHHHHHHHHHH
T ss_pred             EEEEecCCcCCCcEeHHHHHHHHHHHHh
Confidence            0     1259988899988888877763

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=94.06  E-value=0.23  Score=37.34  Aligned_cols=83  Identities=13%  Similarity=0.346  Sum_probs=59.2

Q ss_pred             HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371           17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (224)
Q Consensus        17 s~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~----------   76 (224)
                      +||.+|+.++.=+     .+.-.+.++....+.+....     |-.-.++|.+|.+||.++|.+...=+.          
T Consensus         6 kRl~~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~~G~   85 (153)
T d1ayza_           6 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGE   85 (153)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSB
T ss_pred             HHHHHHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccCCCCCCc
Confidence            7899999998322     34556677777777777433     456789999999999999988754442          


Q ss_pred             ----ceecccCccCcHHHHHHHHHHHH
Q 027371           77 ----IFNLKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ----~f~~~W~~~ssL~~v~~qF~~~L   99 (224)
                          .+.-.|++..++.+|+...+..|
T Consensus        86 icl~~l~~~W~p~~~i~~il~~i~~ll  112 (153)
T d1ayza_          86 ICLDILQNRWTPTYDVASILTSIQSLF  112 (153)
T ss_dssp             BCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             cccccccccCCCcCcHHHHHHHHHHHH
Confidence                00116888888888877766554

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=93.99  E-value=0.21  Score=38.21  Aligned_cols=84  Identities=20%  Similarity=0.349  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhccceee------eec----CCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC----
Q 027371           16 SRSVYSEIEEVGWEHLV------RLS----EDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----   76 (224)
Q Consensus        16 ys~li~Eie~iGW~kl~------~id----~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~----   76 (224)
                      .++|.+|+.++.-+...      .-+    .|+....+.+...     .|..-.++|.++.+||.+||.+...=|.    
T Consensus         4 ~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   83 (156)
T d2uyza1           4 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPN   83 (156)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTT
T ss_pred             HHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccccc
Confidence            36899999987533221      111    2566666777643     3668899999999999999988765451    


Q ss_pred             ----------cee--cccCccCcHHHHHHHHHHHH
Q 027371           77 ----------IFN--LKWSRKSRLKDLLQQFREHL   99 (224)
Q Consensus        77 ----------~f~--~~W~~~ssL~~v~~qF~~~L   99 (224)
                                .+.  -.|++..+|.+|+..++..|
T Consensus        84 V~~~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll  118 (156)
T d2uyza1          84 VYPSGTVSLSILEEDKDWRPAITIKQILLGIQELL  118 (156)
T ss_dssp             BCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred             ccccceeeecccCcccccCCcccHHHHHHHHHHHh
Confidence                      111  16999889999987777666

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=91.62  E-value=0.51  Score=36.09  Aligned_cols=82  Identities=17%  Similarity=0.223  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhccc-eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----c-e-------
Q 027371           17 RSVYSEIEEVGWE-HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----I-F-------   78 (224)
Q Consensus        17 s~li~Eie~iGW~-kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~----~-f-------   78 (224)
                      ++|.+|+.+|--+ ..++-+.++....+.+....     |..-.++|.+|.+||.++|.|...=+.    . .       
T Consensus         3 rr~~~e~~~l~~~~~~~~~~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~~G~vcl   82 (158)
T d1yf9a1           3 RRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL   82 (158)
T ss_dssp             HHHHHHHHHHHSSSSCEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCH
T ss_pred             hHHHHHHHHHhcCCCcCCCCCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccCcccccc
Confidence            4667777777544 34666778888888887543     677789999999999999998865542    0 0       


Q ss_pred             ---ecccCccCcHHHHHHHHHHH
Q 027371           79 ---NLKWSRKSRLKDLLQQFREH   98 (224)
Q Consensus        79 ---~~~W~~~ssL~~v~~qF~~~   98 (224)
                         .-.|++..++..++..+...
T Consensus        83 ~il~~~W~p~~~i~~il~~~i~~  105 (158)
T d1yf9a1          83 DVINQTWTPMYQLENIFDVFLPQ  105 (158)
T ss_dssp             HHHHHHCCTTCCTHHHHHTHHHH
T ss_pred             cccccccCchHhhhhHHHHHHHH
Confidence               11677777777766655443

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.40  E-value=0.68  Score=34.68  Aligned_cols=52  Identities=21%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             CCEEEE--EEEecCCCCCCCCceeecCC-------Cce-----e------cccCc-cCcHHHHHHHHHHHHHH
Q 027371           50 GRVHCM--EIQLDKNYPRSPPSISADVP-------YIF-----N------LKWSR-KSRLKDLLQQFREHLEK  101 (224)
Q Consensus        50 gR~H~l--~v~l~~~yP~~~P~~~~dlP-------~~f-----~------~~W~~-~ssL~~v~~qF~~~Le~  101 (224)
                      |....+  .|.++.+||.+||.|.+...       .+.     .      =+|.+ .++|.++++..+.++..
T Consensus        63 g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~h~~V~~~G~V~lp~L~~W~~~~s~L~~ll~~L~~~f~~  135 (141)
T d1s1qa_          63 GNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGD  135 (141)
T ss_dssp             TEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECCSSSBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEEECCccCCCCCCEEEEecCCCccccCCCeECCCCCCcchhhcCCCcccccHHHHHHHHHHHhCC
Confidence            444555  67789999999999987532       110     0      07754 57898888888877654

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.78  E-value=7.1  Score=27.89  Aligned_cols=62  Identities=15%  Similarity=0.218  Sum_probs=35.1

Q ss_pred             CCchhHHHHHHHHHHhc--cc-eeeeecCC-------cceEEEEEEeCCC------CEEEEEEEecCCCCCCCCceee
Q 027371           11 NSSSFSRSVYSEIEEVG--WE-HLVRLSED-------LKFLSFRVIDKKG------RVHCMEIQLDKNYPRSPPSISA   72 (224)
Q Consensus        11 ~~~~fys~li~Eie~iG--W~-kl~~id~~-------ls~i~l~~~D~~g------R~H~l~v~l~~~yP~~~P~~~~   72 (224)
                      -...|-..-..||++|.  +. ....++.+       -..+++++....+      -.-.|.|++|.+||.++|.+..
T Consensus         7 ~~~~~~E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~   84 (137)
T d1ukxa_           7 GMESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDL   84 (137)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEE
T ss_pred             CcccHHHHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEE
Confidence            34456677778888775  21 22222222       1245555532221      2345777779999998887764