Citrus Sinensis ID: 027388

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHFCHS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHcHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHccccEEEEEEccHHHHHHHHHHHccccHHHHccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHccccccccccccccHHHccHHHHHHHHHHHcHHHcHHHHcccHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccHHHHccccccccEEEEHEEEEEccccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mkrghrgspsssegppaqrfkqnpegdshfledeSTKVFARKVADHysrrtnqtleereaspiihLKKLNNWIKSVLVQLYARRGDVVLdlacgkggdlikwdkakIGYYVGidiaegsiedcrtryngdadhhqrrkkfsfparlicgdcyevhldkvladdapfdicscqfamhySWSTEARARRALANVSAllrpggtfigtmpDANVIIKKLREEHFCHS
Flexible Loop (DISEMBL)
mkrghrgspsssegppaqrfkqnpegdshfleDESTKVFARKVADhysrrtnqtleereaspiihlkklNNWIKSVLVQLYARRGDVVLDLAcgkggdlikwdkakIGYYVGIDIAEGSIEDCRTRYngdadhhqrrkkfsfpARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLrpggtfigtmpdANVIIKKLREEHFCHS
Low Complexity Region (SEG)
MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHFCHS
Disordered region (IsUnstruct)
*************************************************************PIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE******
Disordered Region (DISOPRED)
******************************************VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH****
Disordered Region (DISEMBL)
*************************GDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHFCHS
Disordered Region (DISPRO)
************************************KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHFCHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q9LHQ7	370	mRNA cap guanine-N7 methy	yes	no	0.973	0.589	0.885	1e-109
Q6Z9U7	369	mRNA cap guanine-N7 methy	yes	no	0.968	0.588	0.738	2e-88
O74880	360	mRNA cap guanine-N7 methy	yes	no	0.745	0.463	0.45	5e-38
Q1MTD3	400	mRNA cap guanine-N7 methy	yes	no	0.794	0.445	0.446	2e-36
P0CO65	700	mRNA cap guanine-N7 methy	N/A	no	0.781	0.25	0.424	3e-35
P0CO64	700	mRNA cap guanine-N7 methy	yes	no	0.781	0.25	0.424	4e-35
Q8SR66	298	mRNA cap guanine-N7 methy	yes	no	0.790	0.593	0.402	8e-33
Q6FML4	417	mRNA cap guanine-N7 methy	yes	no	0.736	0.395	0.436	8e-33
Q9XVS1	380	mRNA cap guanine-N7 methy	yes	no	0.781	0.460	0.4	1e-32
Q6CKI0	426	mRNA cap guanine-N7 methy	yes	no	0.745	0.392	0.430	1e-32

>sp|Q9LHQ7|MCES1_ARATH mRNA cap guanine-N7 methyltransferase 1 OS=Arabidopsis thaliana GN=At3g20650 PE=2 SV=1

 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/218 (88%), Positives = 203/218 (93%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG   SPSSS  PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct: 1   MKRGFSDSPSSSAPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYAR  D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct: 121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
           TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE
Sbjct: 181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLRE 218

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 5EC: 6

>sp|Q6Z9U7|MCES1_ORYSJ mRNA cap guanine-N7 methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os08g0180000 PE=2 SV=1

 Score =  325 bits (832), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 161/218 (73%), Positives = 175/218 (80%), Gaps = 1/218 (0%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           M +  R  PSSS     +R      G          +  AR+VADHYS R+NQTLEERE 
Sbjct: 1   MNKRPRDEPSSSFASAPKRQYGAGGGGYGGHGYSEERSSARRVADHYSARSNQTLEEREN 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYA  GD VLDLACGKGGDLIKWDKAK+GYYVG+DIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYAHPGDCVLDLACGKGGDLIKWDKAKVGYYVGVDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           +DC TRYNGD D  QRRKKFSFPARLIC DCYE  LD+ L +DAPFDICSCQFA+HYSWS
Sbjct: 121 KDCMTRYNGDTD-QQRRKKFSFPARLICADCYEARLDEHLYEDAPFDICSCQFALHYSWS 179

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
           TEARAR+ALANVSALLRPGG FIGTMPDANVIIK+LRE
Sbjct: 180 TEARARQALANVSALLRPGGVFIGTMPDANVIIKRLRE 217

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|O74880|MCES_SCHPO mRNA cap guanine-N7 methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pcm1 PE=1 SV=2

 Score =  157 bits (397), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 111/180 (61%), Gaps = 13/180 (7%)

Query: 43  VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGD----VVLDLACGKGGD 98
           V  HY+ R +   ++R+ SPII LK+ NNWIKSVL+Q +A        +VLD+ CGKGGD
Sbjct: 65  VRSHYNARPDLGYKKRQFSPIIQLKRFNNWIKSVLIQKFAPHASDYPILVLDMGCGKGGD 124

Query: 99  LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158
           LIKWDKA I  Y+GIDIAE S+   + RY        R    SF A    GDC+   +++
Sbjct: 125 LIKWDKAGIDGYIGIDIAEVSVNQAKKRY--------REMHASFDALFYAGDCFSSSINE 176

Query: 159 VLADDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217
           +L  D   FD+ S QF MHY++ +E + R  L NVS  L  GG  IGT+P+++VI+K ++
Sbjct: 177 LLPPDQRKFDVVSLQFCMHYAFESEEKVRVLLGNVSKCLPRGGVMIGTIPNSDVIVKHIK 236

Responsible for methylating the 5'-cap structure of mRNAs.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q1MTD3|MCES_DANRE mRNA cap guanine-N7 methyltransferase OS=Danio rerio GN=rnmt PE=2 SV=1

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 107/186 (57%), Gaps = 8/186 (4%)

Query: 40  ARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY------ARRGDVVLDLAC 93
           ++KVA HY++     L ER  S I++++  NNW+KSVL+          RR   VLDL C
Sbjct: 70  SQKVATHYNKIKECGLAERNKSRIVYMRNFNNWLKSVLIAEILDKVRQKRREVTVLDLGC 129

Query: 94  GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153
           GKGGDL+KW K +I   V  DIA  SIE C+ RYN D          +F A  I  DC  
Sbjct: 130 GKGGDLLKWKKGRIDKLVCADIAAVSIEQCQQRYN-DVRRRGHPNDRTFSAEFITADCSR 188

Query: 154 VHLDKVLAD-DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212
             L + L D +  FD+CSCQF  HYS+ +E++A   L N    LRPGG FIGT PDA  +
Sbjct: 189 ELLSEKLQDPELQFDVCSCQFVYHYSFESESQADTMLRNACERLRPGGFFIGTTPDAYEL 248

Query: 213 IKKLRE 218
           +K+L E
Sbjct: 249 VKRLEE 254

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|P0CO65|MCES_CRYNB mRNA cap guanine-N7 methyltransferase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ABD1 PE=3 SV=1

 Score =  148 bits (373), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 115/193 (59%), Gaps = 18/193 (9%)

Query: 43  VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRG-DVVLDLACGKGGDLIK 101
           VA+HY+ R    +E RE SPII LKK NNWIKSVL+  +A R    VLD+ CGKGGDL K
Sbjct: 411 VAEHYNSRPEVGVERREFSPIIGLKKFNNWIKSVLIGKFAYRPRGKVLDVGCGKGGDLNK 470

Query: 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161
           W +A+I  YVG+D+A+ S++         AD ++R  K  F A     DC+   L  VL+
Sbjct: 471 WKQARIALYVGLDVADQSVQQA-------ADRYRRMPKPGFDAFFYAHDCFSNPLSDVLS 523

Query: 162 DDAP----FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK--- 214
            +      +D  + QF MHY++   A+AR  + NVS  LR GG FIGT+P+A ++++   
Sbjct: 524 PELQIKDLYDNVTMQFCMHYAFENAAKARMMIENVSRYLRRGGIFIGTIPNAELLLQLPD 583

Query: 215 ---KLREEHFCHS 224
              +LR  + C+S
Sbjct: 584 RDEELRFGNSCYS 596

Responsible for methylating the 5'-cap structure of mRNAs.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|P0CO64|MCES_CRYNJ mRNA cap guanine-N7 methyltransferase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ABD1 PE=3 SV=1

 Score =  148 bits (373), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 115/193 (59%), Gaps = 18/193 (9%)

Query: 43  VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRG-DVVLDLACGKGGDLIK 101
           VA+HY+ R    +E RE SPII LKK NNWIKSVL+  +A R    VLD+ CGKGGDL K
Sbjct: 411 VAEHYNSRPEVGVERREFSPIIGLKKFNNWIKSVLIGKFAYRPRGKVLDVGCGKGGDLNK 470

Query: 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161
           W +A+I  YVG+D+A+ S++         AD ++R  K  F A     DC+   L  VL+
Sbjct: 471 WKQARIALYVGLDVADQSVQQA-------ADRYRRMPKPGFDAFFYAHDCFSNPLSDVLS 523

Query: 162 DDAP----FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK--- 214
            +      +D  + QF MHY++   A+AR  + NVS  LR GG FIGT+P+A ++++   
Sbjct: 524 PELQIKDLYDNVTMQFCMHYAFENAAKARMMIENVSRYLRRGGIFIGTIPNAELLLQLPD 583

Query: 215 ---KLREEHFCHS 224
              +LR  + C+S
Sbjct: 584 RDEELRFGNSCYS 596

Responsible for methylating the 5'-cap structure of mRNAs.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q8SR66|MCES_ENCCU mRNA cap guanine-N7 methyltransferase OS=Encephalitozoon cuniculi (strain GB-M1) GN=ABD1 PE=1 SV=1

 Score =  140 bits (352), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 76/189 (40%), Positives = 116/189 (61%), Gaps = 12/189 (6%)

Query: 30  FLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVL 89
           F +D++ +    ++ +HY+    +  E R+ S  I+++  NN+IK+ L++LY +RGD VL
Sbjct: 10  FRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVL 69

Query: 90  DLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149
           DL CGKGGDL+K+++A IG Y G+DIAE SI D R R    A + +RR K  F A+    
Sbjct: 70  DLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR----ARNMKRRFKVFFRAQ---- 121

Query: 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209
           D Y  H+D        FD+ S QF+ HY++ST      A  N++  LRPGG FI T+P  
Sbjct: 122 DSYGRHMDL----GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177

Query: 210 NVIIKKLRE 218
           +VI+++ ++
Sbjct: 178 DVILERYKQ 186

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q6FML4|MCES_CANGA mRNA cap guanine-N7 methyltransferase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ABD1 PE=3 SV=1

 Score =  140 bits (352), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 105/181 (58%), Gaps = 16/181 (8%)

Query: 43  VADHYSRRT---NQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDL 99
           V +HY+ RT   N+T  +R  SPII L+  NN IK +L+  +   GDVVL+L CGKGGDL
Sbjct: 110 VREHYNERTYIANRT--KRNQSPIIKLRNFNNAIKFMLIDKFTHTGDVVLELGCGKGGDL 167

Query: 100 IKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159
            K+  A I  ++GIDI+  SI++   RY       Q  K   F A LI GDC+   L   
Sbjct: 168 RKYGAAGISQFIGIDISNASIQEAHKRY-------QSMKNLDFQAILITGDCFGESLGVA 220

Query: 160 LAD----DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215
           +        P D+ S QF +HY++ TE +ARRAL NVS  L+ GG F GT+PD+  +  K
Sbjct: 221 VEPFPECRFPCDVVSTQFCLHYAFETEEKARRALLNVSKSLKVGGRFFGTIPDSEFLRYK 280

Query: 216 L 216
           L
Sbjct: 281 L 281

Responsible for methylating the 5'-cap structure of mRNAs.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9XVS1|MCES_CAEEL mRNA cap guanine-N7 methyltransferase OS=Caenorhabditis elegans GN=tag-72 PE=3 SV=2

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 106/185 (57%), Gaps = 10/185 (5%)

Query: 40  ARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGD-------VVLDLA 92
           + +VA HY++     +E R+ S I  ++ +NNW+KS L+    +R +        VLDLA
Sbjct: 3   SSEVASHYNKVLQVGIEGRKESRIFFMRNMNNWVKSQLINDAKQRVNDNGVNNPRVLDLA 62

Query: 93  CGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152
           CGKGGDL KWD A     V  D+A+ SI+    RY         +K   F  + I  DC 
Sbjct: 63  CGKGGDLKKWDIAGAKDVVMADVADVSIQQAEERYK---QMFGYKKNNIFTVQFIVADCT 119

Query: 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212
           + +L+  + +  PFD+ SCQFA+HYS+  EA AR  L N   +L+PGG FIGT+PDA+ I
Sbjct: 120 KENLEDRIENKDPFDLVSCQFALHYSFVDEASARIFLKNAVGMLKPGGVFIGTLPDADRI 179

Query: 213 IKKLR 217
           +  +R
Sbjct: 180 VWSMR 184

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q6CKI0|MCES_KLULA mRNA cap guanine-N7 methyltransferase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ABD1 PE=3 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 102/179 (56%), Gaps = 12/179 (6%)

Query: 43  VADHYSRRTNQTLE-EREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
           V  HY+ RT  + +  R  SPII L+  NN IK +L+  + R GDVVL+LACGKGGDL K
Sbjct: 119 VRQHYNERTFLSKKHNRNYSPIIKLRNFNNAIKYILIDKFTRAGDVVLELACGKGGDLRK 178

Query: 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161
           +  A I  ++GIDI+  SI +   RY+         K   +   LI GDC+   L   + 
Sbjct: 179 YGAAGISQFIGIDISNASITEALKRYHS-------MKNLEYQVILITGDCFGESLGVAVE 231

Query: 162 D----DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL 216
                  P DI SCQFA+HY++ TE +ARR L NV   L+ GG F GT+PD+  I  K+
Sbjct: 232 SFPECRFPCDIVSCQFALHYAFETEEKARRMLLNVVKSLKIGGYFFGTIPDSEFIRYKM 290

Responsible for methylating the 5'-cap structure of mRNAs.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
225461191	372	PREDICTED: mRNA cap guanine-N7 methyltra	0.973	0.586	0.908	1e-114
356517255	372	PREDICTED: mRNA cap guanine-N7 methyltra	0.973	0.586	0.885	1e-112
356526183	371	PREDICTED: mRNA cap guanine-N7 methyltra	0.973	0.587	0.871	1e-111
449468524	370	PREDICTED: mRNA cap guanine-N7 methyltra	0.968	0.586	0.880	1e-109
255574992	367	mRNA (guanine-7-)methyltransferase, puta	0.950	0.580	0.872	1e-108
357511455	372	mRNA cap guanine-N7 methyltransferase [M	0.973	0.586	0.862	1e-108
42565060	370	mRNA cap guanine-N7 methyltransferase 1	0.973	0.589	0.885	1e-107
42572501	369	mRNA cap guanine-N7 methyltransferase 1	0.973	0.590	0.885	1e-107
297835020	370	mRNA capping enzyme family protein [Arab	0.973	0.589	0.885	1e-107
297852824	375	mRNA capping enzyme family protein [Arab	0.973	0.581	0.835	1e-101

>gi|225461191|ref|XP_002283163.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1 [Vitis vinifera] gi|302143175|emb|CBI20470.3| unnamed protein product [Vitis vinifera]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/218 (90%), Positives = 205/218 (94%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG+  SPS+S GPP  RF+ NPEGDS FLEDESTK FARKVADHYS RTNQTLEEREA
Sbjct: 1   MKRGYTESPSTSLGPPHSRFRHNPEGDSQFLEDESTKNFARKVADHYSARTNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYARRGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           EDCRTRYNGDADHHQRRKKF+FPARLICGDC+EV LD+VL DDAPFDICSCQFAMHYSWS
Sbjct: 121 EDCRTRYNGDADHHQRRKKFTFPARLICGDCFEVPLDRVLEDDAPFDICSCQFAMHYSWS 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
           TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE
Sbjct: 181 TEARARRALANVSALLRPGGIFIGTMPDANVIIKKLRE 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517255|ref|XP_003527304.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1-like [Glycine max]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/218 (88%), Positives = 207/218 (94%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG++ SPSSS GPP  R + +P+G +HF+EDESTK+FARKVADHYS R+NQTLEEREA
Sbjct: 1   MKRGYQESPSSSLGPPHSRARHDPQGGAHFVEDESTKIFARKVADHYSARSNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYARRGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           +DCRTRYNGDADHHQRRKKF+FPARLICGDCYEV LDKVLADDAPFDICSCQFA+HYSWS
Sbjct: 121 KDCRTRYNGDADHHQRRKKFTFPARLICGDCYEVRLDKVLADDAPFDICSCQFALHYSWS 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
           TEARAR+ALANVSALLRPGG FIGTMPDANVIIKKLRE
Sbjct: 181 TEARARQALANVSALLRPGGIFIGTMPDANVIIKKLRE 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526183|ref|XP_003531699.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1-like [Glycine max]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/218 (87%), Positives = 205/218 (94%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG++ S S+S GPP  R + +P+G +HFLEDESTK+FARKVADHYS R+NQTLEEREA
Sbjct: 1   MKRGYQESHSTSLGPPQSRARHDPQGSAHFLEDESTKIFARKVADHYSARSNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYARRGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           +DCRTRYNGDADHHQRRKKF+FPARLICGDCYEV LDKVLADDAPFD+CSCQFA+HYSWS
Sbjct: 121 KDCRTRYNGDADHHQRRKKFTFPARLICGDCYEVRLDKVLADDAPFDLCSCQFALHYSWS 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
           TE RAR+ALANVSALLRPGG FIGTMPDANVIIKKLRE
Sbjct: 181 TEVRARQALANVSALLRPGGIFIGTMPDANVIIKKLRE 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468524|ref|XP_004151971.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1-like [Cucumis sativus] gi|449496924|ref|XP_004160264.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1-like [Cucumis sativus]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/218 (88%), Positives = 201/218 (92%), Gaps = 1/218 (0%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG+  SPS+S GPP  R K NPEGD+ F EDESTK+FARKVA+HYS RTNQTLEEREA
Sbjct: 1   MKRGYSESPSASLGPPQSRPKYNPEGDAEF-EDESTKIFARKVAEHYSARTNQTLEEREA 59

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           S IIHLKKLNNWIKSVLVQLYARRGD VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 60  SVIIHLKKLNNWIKSVLVQLYARRGDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 119

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           EDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  LD VLADDAPFDICSCQFA+HYSWS
Sbjct: 120 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEARLDHVLADDAPFDICSCQFALHYSWS 179

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
           TEARARRALAN+SALLRPGG  IGTMPDANVI+KKLRE
Sbjct: 180 TEARARRALANISALLRPGGVLIGTMPDANVIVKKLRE 217

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574992|ref|XP_002528402.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis] gi|223532190|gb|EEF33995.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/219 (87%), Positives = 201/219 (91%), Gaps = 6/219 (2%)

Query: 1   MKRGHRGSPSSS-EGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEERE 59
           MKRG+  SPS+S +GPP  R +  P+G++HF ED     F +KVADHYS RTNQTLEERE
Sbjct: 1   MKRGYSESPSTSGDGPPKSRIRYTPQGEAHFSED-----FVQKVADHYSARTNQTLEERE 55

Query: 60  ASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGS 119
           ASPIIHLKKLNNWIKSVLVQLYARRGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGS
Sbjct: 56  ASPIIHLKKLNNWIKSVLVQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGS 115

Query: 120 IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW 179
           IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV LDKVLADDAPFDICSCQFA+HYSW
Sbjct: 116 IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVRLDKVLADDAPFDICSCQFALHYSW 175

Query: 180 STEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
           STEARARRALANVSALLRPGGTFIGTMPDANVI+KKLRE
Sbjct: 176 STEARARRALANVSALLRPGGTFIGTMPDANVIVKKLRE 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511455|ref|XP_003626016.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula] gi|355501031|gb|AES82234.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/218 (86%), Positives = 202/218 (92%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG+R SPSSS G P  + + N +GD +FLEDESTK +ARKVADHYS R+NQTLEEREA
Sbjct: 1   MKRGYRESPSSSFGQPHSKPRHNSQGDENFLEDESTKNYARKVADHYSARSNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYA RGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYACRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           +DCRTRYNGDADHHQRRKKF+FPARL+CGDCYEV LDKVLA+DAPFDICSCQFA+HYSWS
Sbjct: 121 KDCRTRYNGDADHHQRRKKFTFPARLLCGDCYEVRLDKVLAEDAPFDICSCQFALHYSWS 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
           TEARAR+ALANVSALLRPGG FIGTMPDANVI KKLRE
Sbjct: 181 TEARARQALANVSALLRPGGVFIGTMPDANVITKKLRE 218

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565060|ref|NP_188701.2| mRNA cap guanine-N7 methyltransferase 1 [Arabidopsis thaliana] gi|75273308|sp|Q9LHQ7.1|MCES1_ARATH RecName: Full=mRNA cap guanine-N7 methyltransferase 1; AltName: Full=mRNA (guanine-N(7)-)-methyltransferase 1; AltName: Full=mRNA cap methyltransferase 1 gi|9294344|dbj|BAB02241.1| mRNA cap methyltransferase-like protein [Arabidopsis thaliana] gi|28973781|gb|AAO64206.1| unknown protein [Arabidopsis thaliana] gi|29824183|gb|AAP04052.1| unknown protein [Arabidopsis thaliana] gi|110736712|dbj|BAF00319.1| hypothetical protein [Arabidopsis thaliana] gi|332642886|gb|AEE76407.1| mRNA cap guanine-N7 methyltransferase 1 [Arabidopsis thaliana]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/218 (88%), Positives = 203/218 (93%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG   SPSSS  PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct: 1   MKRGFSDSPSSSAPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYAR  D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct: 121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
           TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE
Sbjct: 181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLRE 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572501|ref|NP_974346.1| mRNA cap guanine-N7 methyltransferase 1 [Arabidopsis thaliana] gi|332642887|gb|AEE76408.1| mRNA cap guanine-N7 methyltransferase 1 [Arabidopsis thaliana]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/218 (88%), Positives = 203/218 (93%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG   SPSSS  PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct: 1   MKRGFSDSPSSSAPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYAR  D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct: 121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
           TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE
Sbjct: 181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLRE 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835020|ref|XP_002885392.1| mRNA capping enzyme family protein [Arabidopsis lyrata subsp. lyrata] gi|297331232|gb|EFH61651.1| mRNA capping enzyme family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/218 (88%), Positives = 203/218 (93%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG   SPSSS  PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct: 1   MKRGFSESPSSSGPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYAR  D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct: 121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
           TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE
Sbjct: 181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLRE 218

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852824|ref|XP_002894293.1| mRNA capping enzyme family protein [Arabidopsis lyrata subsp. lyrata] gi|297340135|gb|EFH70552.1| mRNA capping enzyme family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/219 (83%), Positives = 200/219 (91%), Gaps = 1/219 (0%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFL-EDESTKVFARKVADHYSRRTNQTLEERE 59
           MKRG+  SPSSS+ P + RFK NPEGDS FL +D+STK FARKVADHYSRRTNQTLEERE
Sbjct: 1   MKRGNFESPSSSDLPSSSRFKLNPEGDSEFLKDDDSTKNFARKVADHYSRRTNQTLEERE 60

Query: 60  ASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGS 119
           +SPIIHLKKLNNWIKSVL+QLY RR D VLDLACGKGGDLIKW+KA IGYYVGIDIAEGS
Sbjct: 61  SSPIIHLKKLNNWIKSVLIQLYTRRDDAVLDLACGKGGDLIKWEKAMIGYYVGIDIAEGS 120

Query: 120 IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW 179
           IEDCRTRYNGDADHH R +K+SFPARL+CGDC+E+ LDK+L +DAPFDICSCQFAMHYSW
Sbjct: 121 IEDCRTRYNGDADHHHRHRKYSFPARLLCGDCFEIELDKILEEDAPFDICSCQFAMHYSW 180

Query: 180 STEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
           +TE RARRAL+NVSALLRPGG FIGTMPDANVIIKKLRE
Sbjct: 181 TTETRARRALSNVSALLRPGGIFIGTMPDANVIIKKLRE 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2083420	370	AT3G20650 "AT3G20650" [Arabido	0.973	0.589	0.885	7.5e-105
ZFIN|ZDB-GENE-041008-25	400	rnmt "RNA (guanine-7-) methylt	0.937	0.525	0.411	1.3e-36
POMBASE|SPCC330.10	360	pcm1 "P-TEFb-cap methyltransfe	0.745	0.463	0.45	9.2e-36
UNIPROTKB|Q4R7K1	476	RNMT "mRNA cap guanine-N7 meth	0.763	0.359	0.420	4.9e-33
UNIPROTKB|F1MHQ5	477	RNMT "mRNA cap guanine-N7 meth	0.772	0.362	0.417	1.1e-30
UNIPROTKB|E2R4R3	478	RNMT "mRNA cap guanine-N7 meth	0.772	0.361	0.406	1.1e-30
UNIPROTKB|E1BYM1	415	RNMT "mRNA cap guanine-N7 meth	0.772	0.416	0.419	4.9e-30
UNIPROTKB|E2RK56	457	E2RK56 "mRNA cap guanine-N7 me	0.915	0.448	0.354	6.2e-30
UNIPROTKB|Q28FT4	405	rnmt "mRNA cap guanine-N7 meth	0.915	0.506	0.375	6.2e-30
UNIPROTKB|Q61E36	378	tag-72 "mRNA cap guanine-N7 me	0.776	0.460	0.416	6.2e-30

TAIR|locus:2083420 AT3G20650 "AT3G20650" [Arabidopsis thaliana (taxid:3702)]

 Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
 Identities = 193/218 (88%), Positives = 203/218 (93%)

Query:     1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
             MKRG   SPSSS  PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct:     1 MKRGFSDSPSSSAPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60

Query:    61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
             SPIIHLKKLNNWIKSVL+QLYAR  D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct:    61 SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query:   121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
             EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct:   121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180

Query:   181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
             TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE
Sbjct:   181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLRE 218

GO:0003824 "catalytic activity" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;ISS

GO:0015824 "proline transport" evidence=RCA

ZFIN|ZDB-GENE-041008-25 rnmt "RNA (guanine-7-) methyltransferase" [Danio rerio (taxid:7955)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 91/221 (41%), Positives = 123/221 (55%)

Query:     8 SPSSSEGPPAQRFKQNPEGDSHFLEDE---STKVFARKVADHYSRRTNQTLEEREASPII 64
             S SSS     +R   + E D H    +      + ++KVA HY++     L ER  S I+
Sbjct:    35 STSSSSSSVKRRRDGDEEDDDHSPSKKLVTEDSLHSQKVATHYNKIKECGLAERNKSRIV 94

Query:    65 HLKKLNNWIKSVLV-----QLYARRGDV-VLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118
             +++  NNW+KSVL+     ++  +R +V VLDL CGKGGDL+KW K +I   V  DIA  
Sbjct:    95 YMRNFNNWLKSVLIAEILDKVRQKRREVTVLDLGCGKGGDLLKWKKGRIDKLVCADIAAV 154

Query:   119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD-DAPFDICSCQFAMHY 177
             SIE C+ RYN D          +F A  I  DC    L + L D +  FD+CSCQF  HY
Sbjct:   155 SIEQCQQRYN-DVRRRGHPNDRTFSAEFITADCSRELLSEKLQDPELQFDVCSCQFVYHY 213

Query:   178 SWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
             S+ +E++A   L N    LRPGG FIGT PDA  ++K+L E
Sbjct:   214 SFESESQADTMLRNACERLRPGGFFIGTTPDAYELVKRLEE 254

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0006397 "mRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

POMBASE|SPCC330.10 pcm1 "P-TEFb-cap methyltransferase Pcm1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 81/180 (45%), Positives = 111/180 (61%)

Query:    43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGD----VVLDLACGKGGD 98
             V  HY+ R +   ++R+ SPII LK+ NNWIKSVL+Q +A        +VLD+ CGKGGD
Sbjct:    65 VRSHYNARPDLGYKKRQFSPIIQLKRFNNWIKSVLIQKFAPHASDYPILVLDMGCGKGGD 124

Query:    99 LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158
             LIKWDKA I  Y+GIDIAE S+   + RY        R    SF A    GDC+   +++
Sbjct:   125 LIKWDKAGIDGYIGIDIAEVSVNQAKKRY--------REMHASFDALFYAGDCFSSSINE 176

Query:   159 VLA-DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217
             +L  D   FD+ S QF MHY++ +E + R  L NVS  L  GG  IGT+P+++VI+K ++
Sbjct:   177 LLPPDQRKFDVVSLQFCMHYAFESEEKVRVLLGNVSKCLPRGGVMIGTIPNSDVIVKHIK 236

GO:0001510 "RNA methylation" evidence=IC

GO:0003723 "RNA binding" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IGI

GO:0005634 "nucleus" evidence=IGI;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006370 "7-methylguanosine mRNA capping" evidence=IGI

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=ISS

GO:0032153 "cell division site" evidence=IDA

GO:0070693 "P-TEFb-cap methyltransferase complex" evidence=IDA

UNIPROTKB|Q4R7K1 RNMT "mRNA cap guanine-N7 methyltransferase" [Macaca fascicularis (taxid:9541)]

 Score = 336 (123.3 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
 Identities = 77/183 (42%), Positives = 105/183 (57%)

Query:    43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYA------RRGDV-VLDLACGK 95
             VA HY+      LE+R  S I +L+  NNW+KSVL+  +       ++ D+ VLDL CGK
Sbjct:   149 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGK 208

Query:    96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-E 153
             GGDL+KW K +I   V  DIA+ SI+ C+ RY    D   RR  ++ F A  I  DC  E
Sbjct:   209 GGDLLKWKKGRINKLVCTDIADVSIKQCQQRYE---DMKNRRDSEYIFSAEFITADCSKE 265

Query:   154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213
             + ++K       FDICSCQF  HYS+ +  +A   L N    L PGG FIGT P++  +I
Sbjct:   266 LLIEKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELI 325

Query:   214 KKL 216
             ++L
Sbjct:   326 RRL 328

GO:0003723 "RNA binding" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

UNIPROTKB|F1MHQ5 RNMT "mRNA cap guanine-N7 methyltransferase" [Bos taurus (taxid:9913)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 76/182 (41%), Positives = 102/182 (56%)

Query:    43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYA-------RRGDVVLDLACGK 95
             VA HY+      LE+R  S I +L+  NNW+KSVL+  +        +R   VLDL CGK
Sbjct:   149 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRNITVLDLGCGK 208

Query:    96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EV 154
             GGDL+KW K +I   V  DIA+ S+  C+ RY  D  +  R  ++ F A  I  DC  E+
Sbjct:   209 GGDLLKWKKGRIDKLVCTDIADVSVRQCQQRYE-DMKNRCRDNEYIFSAEFITADCSKEL 267

Query:   155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214
               DK    +  FDICSCQF  HYS+ +  +A   L N    L PGG FIGT P++  +I+
Sbjct:   268 LTDKFRDREMCFDICSCQFVCHYSFESYEQADVMLRNACERLSPGGYFIGTTPNSFELIR 327

Query:   215 KL 216
             +L
Sbjct:   328 RL 329

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

UNIPROTKB|E2R4R3 RNMT "mRNA cap guanine-N7 methyltransferase" [Canis lupus familiaris (taxid:9615)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 74/182 (40%), Positives = 105/182 (57%)

Query:    43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYA------RRGDV-VLDLACGK 95
             VA HY+      LE+R  S I +L+  NNW+KSVL+  +       ++ D+ VLDL CGK
Sbjct:   150 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGK 209

Query:    96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EV 154
             GGDL+KW K +I   V  DIA+ S++ C+ RY  D  +  R  ++ F A  +  DC  E+
Sbjct:   210 GGDLLKWKKGRINKLVCTDIADVSVKQCQQRYE-DMKNRCRDNEYIFNAEFVTADCSKEL 268

Query:   155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214
               +K    +  FDICSCQF  HYS+ +  +A   L N    L PGG FIGT P++  +I+
Sbjct:   269 LFNKFRDPETCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIR 328

Query:   215 KL 216
             +L
Sbjct:   329 RL 330

GO:0005634 "nucleus" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E1BYM1 RNMT "mRNA cap guanine-N7 methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 76/181 (41%), Positives = 102/181 (56%)

Query:    43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLV-----QLYARRGDV-VLDLACGKG 96
             VA HY+      LE+R  S I +L+  NNW KSVL+     ++  ++ D+ VLDL CGKG
Sbjct:    88 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWTKSVLIGEFIDRVRQKKSDITVLDLGCGKG 147

Query:    97 GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156
             GDL+KW K +I   V  DIA+ S++ C+ RY  D     R  +  F A  I  D  +  L
Sbjct:   148 GDLLKWRKGRIKKLVCTDIADISVQQCKQRYE-DMKARCRYNERIFDAEFIQADSTKDLL 206

Query:   157 DKVLAD-DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215
                 +D D  FDICSCQF  HYS+ T  +A   L N    L PGG FIGT P++  ++K+
Sbjct:   207 SSKYSDPDTRFDICSCQFVYHYSFETYEQADMMLKNACGNLSPGGYFIGTTPNSFELVKR 266

Query:   216 L 216
             L
Sbjct:   267 L 267

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

UNIPROTKB|E2RK56 E2RK56 "mRNA cap guanine-N7 methyltransferase" [Canis lupus familiaris (taxid:9615)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 79/223 (35%), Positives = 121/223 (54%)

Query:     6 RGSPSSSEGPPAQR-FKQN-PEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPI 63
             +  P + +G   +R  +++ PE   +  E  S+ V A     HY+      LE+R  S I
Sbjct:    94 KDEPFTGDGTQKKRKIEEDVPEKQKNLEEGHSSAVAA-----HYNELQEVGLEKRSQSRI 148

Query:    64 IHLKKLNNWIKSVLVQLYA--------RRGDV-VLDLACGKGGDLIKWDKAKIGYYVGID 114
              +L+  NNW+KSVL++ +         ++ D+ VLDL  GKGGDL+ W K +I   V  D
Sbjct:   149 FNLRNFNNWVKSVLIEEFLEKVRQKKKKQRDITVLDLGWGKGGDLLNWKKGRINKVVCTD 208

Query:   115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EVHLDKVLADDAPFDICSCQF 173
             I + S++ C+ RY  D  +H R  ++ F A  +  DC  E+ ++K    +  FDICSCQF
Sbjct:   209 ITDVSVKQCQQRYE-DMKNHCRDNEYIFSAEFVTADCSKELLINKFRDAETCFDICSCQF 267

Query:   174 AMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL 216
               HYS+ +  +A   L N    L PGG FIGT P++  +I++L
Sbjct:   268 VCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRL 310

GO:0005634 "nucleus" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q28FT4 rnmt "mRNA cap guanine-N7 methyltransferase" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 81/216 (37%), Positives = 105/216 (48%)

Query:     8 SPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLK 67
             SP  ++  P +R    PE  S        +     V  HY+      LE R  S I HL+
Sbjct:    46 SPPKNKKSPLKRKAGEPESPSK--RPRLEEGHGSLVVTHYNELPETGLETRSQSRIFHLR 103

Query:    68 KLNNWIKSVLVQLYAR------RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIE 121
               NNW+KS L+  +        R   VLDL CGKGGDL+KW K  I   V  DIA+ S++
Sbjct:   104 NFNNWMKSALIGEFVEKVRQRTRNIAVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVK 163

Query:   122 DCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD-DAPFDICSCQFAMHYSWS 180
              C  RY  D     R ++  F A  +  D  +  L +   D +  FDICSCQF  HYS+ 
Sbjct:   164 QCEERYK-DLKRKSRNERV-FEAEFLTADSTKELLSEKYNDPEIKFDICSCQFVYHYSFE 221

Query:   181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKL 216
             T  +A   L N    L PGG FIGT PD   ++K+L
Sbjct:   222 TYEQADMMLRNACERLCPGGFFIGTTPDGFELVKRL 257

GO:0003723 "RNA binding" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

UNIPROTKB|Q61E36 tag-72 "mRNA cap guanine-N7 methyltransferase" [Caenorhabditis briggsae (taxid:6238)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 77/185 (41%), Positives = 105/185 (56%)

Query:    40 ARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLV----QLYARRG---DVVLDLA 92
             A +VADHY+      +++R+ S I  ++ +NNWIKS L+    +L    G    VVLD+A
Sbjct:     3 AAEVADHYNNVRQAGIQDRKESRIFFMRNMNNWIKSQLINDAMKLVNENGVKSPVVLDIA 62

Query:    93 CGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152
             CGKGGDL KWD     + V  D+A+ SI+    RY      H+      F A+ I  DC 
Sbjct:    63 CGKGGDLRKWDITGAKHVVMADVADVSIQQAEERYK---TMHKYPHDI-FGAQFIVADCT 118

Query:   153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212
             + +LD  +    PFD+ SCQFAMHYS+  E  AR  L N    L+ GG FIGT+PDA+ I
Sbjct:   119 KENLDDKIEIKEPFDLVSCQFAMHYSFVDEDSARTFLKNAVGKLKLGGVFIGTLPDADRI 178

Query:   213 IKKLR 217
             +  +R
Sbjct:   179 VWAVR 183

GO:0003723 "RNA binding" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LHQ7	MCES1_ARATH	2, ., 1, ., 1, ., 5, 6	0.8853	0.9732	0.5891	yes	no
Q6Z9U7	MCES1_ORYSJ	2, ., 1, ., 1, ., 5, 6	0.7385	0.9687	0.5880	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.963
4th Layer	2.1.1.56	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00027468001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (372 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021461001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (363 aa)						•	•		0.547
	GSVIVG00036639001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (318 aa)				•		•			0.519
	GSVIVG00023710001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (758 aa)				•		•			0.511
	GSVIVG00022766001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (332 aa)						•	•		0.498
	GSVIVG00024501001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (433 aa)				•		•			0.484
	GSVIVG00024229001	SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgu [...] (176 aa)				•		•			0.477
	GSVIVG00018813001	SubName- Full=Putative uncharacterized protein (Chromosome chr12 scaffold_18, whole genome shot [...] (138 aa)						•			0.465
	GSVIVG00032808001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (116 aa)						•	•		0.456
	GSVIVG00016705001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (206 aa)						•			0.423
	GSVIVG00015507001	RecName- Full=DNA-directed RNA polymerase; EC=2.7.7.6; (1010 aa)					•	•	•		0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
pfam03291	327	pfam03291, Pox_MCEL, mRNA capping enzyme	1e-89
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	9e-11
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	1e-10
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-09
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	2e-09
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	2e-09
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	1e-07
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	2e-07
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	2e-05
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	2e-05
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	6e-05
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	8e-05
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	0.002

>gnl|CDD|217477 pfam03291, Pox_MCEL, mRNA capping enzyme

 Score =  266 bits (683), Expect = 1e-89
 Identities = 84/199 (42%), Positives = 107/199 (53%), Gaps = 10/199 (5%)

Query: 30  FLEDESTKVFARKVADHYSRRTNQT--LEEREASPIIHLKKLNNWIKSVLVQLYAR---- 83
               E+       VA HY+        L++R+ S I  L+  NNWIKS+L+ LYA     
Sbjct: 1   EGPFETESNIVDIVAAHYNELPESGIDLKKRQDSTIDQLRNFNNWIKSLLISLYASKTFQ 60

Query: 84  --RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGD-ADHHQRRKKF 140
                 VLDL CGKGGDL K+ K  I   +G DIAE SIE  + RYN   +    +  KF
Sbjct: 61  DKPKRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERYNDLNSRSKSKYYKF 120

Query: 141 SFPARLICGDCYEVHLDKVLADDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199
            F A  I GDC+   + +V       FDI S QFA+HYS+ +E +AR  L N++ LL  G
Sbjct: 121 DFIAEFITGDCFVSSVREVFEPGQRKFDIVSWQFAIHYSFESEEKARTMLRNLAELLASG 180

Query: 200 GTFIGTMPDANVIIKKLRE 218
           G FIGT PD + IIKKL  
Sbjct: 181 GKFIGTTPDGDFIIKKLTA 199

This family of enzymes are related to pfam03919. Length = 327

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 56.7 bits (137), Expect = 9e-11
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 88  VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147
           VLDL CG G   +           G+DI+  ++E  R                +    ++
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKA---------AAALLADNVEVL 52

Query: 148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
            GD  E+  +     D  FD+      +H+         R L     LL+PGG  +
Sbjct: 53  KGDAEELPPEA----DESFDVIISDPPLHHL---VEDLARFLEEARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 24/115 (20%)

Query: 89  LDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC 148
           LD+ CG G       +       G+D++   +   R R                  + + 
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP---------------RKFVV 45

Query: 149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
           GD  ++        D  FD+      +H+         RAL  ++ +L+PGG  +
Sbjct: 46  GDAEDLPF-----PDESFDVVVSSLVLHHL----PDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 24/121 (19%), Positives = 37/121 (30%), Gaps = 22/121 (18%)

Query: 84  RGDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142
            G  VLD+ CG G   I+  +   G    G+D++   +E  R                  
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-------- 52

Query: 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202
               + GD         L     FD                     L  +++LL+PGG  
Sbjct: 53  -ITFVQGD-----APDALDLLEGFDAVFIGGGGG-------DLLELLDALASLLKPGGRL 99

Query: 203 I 203
           +
Sbjct: 100 V 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 18/115 (15%)

Query: 89  LDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147
           LD+ CG G  L    +A  G  Y G+DI+  ++E    R          R +        
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLD------ 54

Query: 148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202
                   LD +  D   FD+      +H+     A  R  L N+  LL+PGG  
Sbjct: 55  -------VLDAIDLDPGSFDVVVASNVLHHL----ADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 88  VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147
           +LDL CG G  L    +A      G+DI++ ++E  + R           +      R +
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERL----------RDKGPKVRFV 50

Query: 148 CGDCYEVHLDKVLADDAPFDICSCQFA-MHYSWSTEARARRALANVSALLRPGG 200
             D  ++       ++  FD+  C    + Y    + RA   L   + LLRPGG
Sbjct: 51  VADARDLP-----FEEGSFDLVICAGLSLDYLSPKQLRA--LLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 40/160 (25%), Positives = 56/160 (35%), Gaps = 35/160 (21%)

Query: 80  LYARRGDVVLDLACGKGGDL--IKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR 137
           L  + GD VLD+ CG G D   +       G  VGID +E  +   + R  G        
Sbjct: 15  LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGP----- 69

Query: 138 KKFSFPARLICGDCYEVHLDKVLADDAPFDIC-SCQFAMHYSWSTEARARRALANVSALL 196
                    + GD   +        D  FD   S +   H          RALA ++ +L
Sbjct: 70  -----NVEFVRGDADGLPF-----PDGSFDAVRSDRVLQHL-----EDPARALAEIARVL 114

Query: 197 RPGG----------TFIGTMPDANVIIKKLR--EEHFCHS 224
           RPGG          T +    D  ++ K L    +HF   
Sbjct: 115 RPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADP 154

Length = 241

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 21/125 (16%)

Query: 83  RRGDVVLDLACGKGGDLIKWDKAKIGY----YVGIDIAEGSIEDCRTRYNGDADHHQRRK 138
           + G  VLDL CG G        A+        VGIDI+E +IE  +            +K
Sbjct: 2   KSGIKVLDLGCGTGYLTFIL--AEKLGPGAEVVGIDISEEAIEKAKEN---------AKK 50

Query: 139 KFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP 198
                   I GD  E  L ++  +D  FD+      +++    +      L  +  +L+P
Sbjct: 51  LGYENVEFIQGDIEE--LPQLQLEDNSFDVVISNEVLNHLPDPDK----VLEEIIRVLKP 104

Query: 199 GGTFI 203
           GG  I
Sbjct: 105 GGVLI 109

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 44.5 bits (102), Expect = 2e-05
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 17/131 (12%)

Query: 81  YARRGDVVLDLACGKGGD-LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK 139
               G  VLD+ CG G   L+     +  Y VG+D++   +   R R  G          
Sbjct: 45  LLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL----- 99

Query: 140 FSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199
                  +  D     L     D A FD+      +H          +AL  +  +L+PG
Sbjct: 100 ----VDFVVADALGGVLP--FEDSASFDLVISLLVLHL-----LPPAKALRELLRVLKPG 148

Query: 200 GTFIGTMPDAN 210
           G  + +    +
Sbjct: 149 GRLVLSDLLRD 159

Length = 257

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 35/141 (24%)

Query: 72  WIKSVLVQLY-ARRGDVVLDLACGKGGDLIKW-DKAKIGYYVGIDIAEGSIEDCRTRYNG 129
           W +  L+ L   + GD VLD+ACG G   +        G  VG+DI+E  +E        
Sbjct: 39  W-RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLE-------- 89

Query: 130 DADHHQRRKKFSFPARLICGDCYEVHLDKVLAD-------DAPFDICSCQFAMHYSWSTE 182
                         AR         +++ V+ D       D  FD  +  F +       
Sbjct: 90  -------------VAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNV---- 132

Query: 183 ARARRALANVSALLRPGGTFI 203
               +AL  +  +L+PGG  +
Sbjct: 133 TDIDKALKEMYRVLKPGGRLL 153

Length = 238

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 27/124 (21%), Positives = 38/124 (30%), Gaps = 17/124 (13%)

Query: 85  GDVVLDLACGKGGDLIK-WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143
           GD VLD   G G  L+           VG+++   +    R R                 
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAP--------R 52

Query: 144 ARLICGDCYEVHLDKVLADDAPFD-ICSCQF---AMHYSWSTEARARRALANVSALLRPG 199
            R++ GD  E+        D  FD +                     R LA    LL+PG
Sbjct: 53  VRVVVGDARELLE----LPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPG 108

Query: 200 GTFI 203
           G  +
Sbjct: 109 GVLV 112

This family contains methyltransferase domains. Length = 117

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 42.1 bits (100), Expect = 8e-05
 Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 15/85 (17%)

Query: 37  KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKG 96
           ++F   +A  Y    N  L     S  +H      W +  +  L  R GD VLDLACG  
Sbjct: 15  EMFDS-IAPKYDL-MNDLL-----SFGLHRV----WRRKTIKWLGVRPGDKVLDLACGT- 62

Query: 97  GDL-IKWDKA--KIGYYVGIDIAEG 118
           GDL I   KA  K G  VG+D +EG
Sbjct: 63  GDLAIALAKAVGKTGEVVGLDFSEG 87

Length = 239

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 39/194 (20%), Positives = 70/194 (36%), Gaps = 43/194 (22%)

Query: 38  VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGG 97
           +F R +A  Y    N  L     S  +H      W +  +  +   +G  VLD+ACG G 
Sbjct: 4   MFDR-IAPKYDL-LNDLL-----SFGLH----RLWRRRAVKLIGVFKGQKVLDVACGTGD 52

Query: 98  DLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155
             I+  K     G   G+D +   +E             +++ +       I  D   + 
Sbjct: 53  LAIELAKSAPDRGKVTGVDFSSEMLE------VA-----KKKSELPLNIEFIQADAEALP 101

Query: 156 LDKVLADDAPFDICSCQFAM----HYSWSTEARARRALANVSALLRPGGTF--IGTMPDA 209
                 +D  FD  +  F +              ++AL  +  +L+PGG    +     A
Sbjct: 102 F-----EDNSFDAVTIAFGLRNVTDI--------QKALREMYRVLKPGGRLVILEFSKPA 148

Query: 210 NVIIKKLREEHFCH 223
           N ++KK  + +  +
Sbjct: 149 NALLKKFYKFYLKN 162

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.93
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.91
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.89
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.89
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.87
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.86
PLN02244	340	tocopherol O-methyltransferase	99.85
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.84
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.84
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.82
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.82
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.81
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.81
PRK05785	226	hypothetical protein; Provisional	99.8
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.8
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.79
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.78
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.77
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.77
PLN02490	340	MPBQ/MSBQ methyltransferase	99.76
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.75
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.75
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.75
PRK11207	197	tellurite resistance protein TehB; Provisional	99.75
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.75
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.75
PLN02336	475	phosphoethanolamine N-methyltransferase	99.75
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.74
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.74
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.73
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.72
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.72
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.72
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.71
PRK08317	241	hypothetical protein; Provisional	99.71
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.7
KOG1271	227	consensus Methyltransferases [General function pre	99.7
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.7
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.7
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.68
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.68
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.68
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.68
PRK12335	287	tellurite resistance protein TehB; Provisional	99.67
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.66
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.66
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.65
PRK06922	677	hypothetical protein; Provisional	99.65
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.65
KOG4300	252	consensus Predicted methyltransferase [General fun	99.65
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.64
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.64
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.64
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.63
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.62
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.62
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.61
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.61
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.61
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.61
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.61
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.61
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.6
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.6
PLN03075	296	nicotianamine synthase; Provisional	99.59
PLN02336	475	phosphoethanolamine N-methyltransferase	99.59
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.59
PRK14967	223	putative methyltransferase; Provisional	99.59
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.59
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.58
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.58
PRK06202	232	hypothetical protein; Provisional	99.58
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.58
TIGR03438	301	probable methyltransferase. This model represents	99.57
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.56
PRK14968	188	putative methyltransferase; Provisional	99.55
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.55
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.55
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.54
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.54
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.53
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.53
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.53
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.52
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.52
PRK04266	226	fibrillarin; Provisional	99.52
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.52
KOG2361	264	consensus Predicted methyltransferase [General fun	99.51
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.51
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.51
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.51
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.5
COG4123	248	Predicted O-methyltransferase [General function pr	99.5
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.5
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.49
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.48
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.47
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.47
KOG3010	261	consensus Methyltransferase [General function pred	99.46
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.46
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.46
PRK07402	196	precorrin-6B methylase; Provisional	99.45
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.44
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.44
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.44
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.44
PTZ00146	293	fibrillarin; Provisional	99.43
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.42
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.41
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.41
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.4
PHA03411	279	putative methyltransferase; Provisional	99.4
PRK04457	262	spermidine synthase; Provisional	99.4
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.39
TIGR00438	188	rrmJ cell division protein FtsJ.	99.38
PRK00811	283	spermidine synthase; Provisional	99.37
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.37
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.36
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.35
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.34
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.33
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.32
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.32
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.32
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	99.31
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.3
COG2890	280	HemK Methylase of polypeptide chain release factor	99.29
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.29
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.27
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.26
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.26
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.25
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.25
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.24
KOG2940	325	consensus Predicted methyltransferase [General fun	99.24
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.24
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.23
PRK01581	374	speE spermidine synthase; Validated	99.23
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.23
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.22
KOG2899	288	consensus Predicted methyltransferase [General fun	99.22
PRK03612	521	spermidine synthase; Provisional	99.22
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.2
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.18
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.18
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.18
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.17
PLN02366	308	spermidine synthase	99.17
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.17
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.17
PHA03412	241	putative methyltransferase; Provisional	99.17
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.16
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.15
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	99.14
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.13
PLN02672	1082	methionine S-methyltransferase	99.13
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.12
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	99.12
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.1
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.1
PLN02476	278	O-methyltransferase	99.08
COG4122	219	Predicted O-methyltransferase [General function pr	99.07
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.06
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.06
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	99.05
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.04
KOG2904	328	consensus Predicted methyltransferase [General fun	99.03
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.0
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.0
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.98
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.98
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.98
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.97
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.97
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.97
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.95
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.95
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.95
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.94
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.94
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.91
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.9
KOG1331	293	consensus Predicted methyltransferase [General fun	98.84
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.82
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.82
PLN02823	336	spermine synthase	98.81
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.77
PRK04148	134	hypothetical protein; Provisional	98.75
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.74
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.73
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.72
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.71
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.7
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.7
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.69
COG2521	287	Predicted archaeal methyltransferase [General func	98.69
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.67
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.67
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.66
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.66
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.65
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.62
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.6
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.6
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.59
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.59
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.59
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.59
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.59
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.58
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.58
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.57
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.55
PRK00536	262	speE spermidine synthase; Provisional	98.53
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.53
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.52
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.5
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.47
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.46
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.42
COG2520	341	Predicted methyltransferase [General function pred	98.42
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.4
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.39
KOG2730	263	consensus Methylase [General function prediction o	98.38
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.37
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.33
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.33
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.31
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.31
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.29
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.29
PF13679	141	Methyltransf_32: Methyltransferase domain	98.28
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.27
COG4076	252	Predicted RNA methylase [General function predicti	98.24
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.23
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.22
COG3897	218	Predicted methyltransferase [General function pred	98.09
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.07
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.99
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.97
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.96
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.94
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.88
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.85
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.75
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.75
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.74
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.73
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.68
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.67
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.61
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.6
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.58
COG0286	489	HsdM Type I restriction-modification system methyl	97.56
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.52
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.47
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.46
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.46
PLN02668	386	indole-3-acetate carboxyl methyltransferase	97.39
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	97.37
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.36
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	97.36
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.29
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.29
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.28
KOG3115	249	consensus Methyltransferase-like protein [General	97.27
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.27
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.26
PRK10742	250	putative methyltransferase; Provisional	97.15
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.14
COG4301	321	Uncharacterized conserved protein [Function unknow	97.1
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.09
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.05
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	96.72
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.72
COG4798	238	Predicted methyltransferase [General function pred	96.64
KOG2920	282	consensus Predicted methyltransferase [General fun	96.63
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.55
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.49
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.46
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	96.45
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.41
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.4
PRK11524	284	putative methyltransferase; Provisional	96.36
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	96.36
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.31
PHA01634	156	hypothetical protein	96.28
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.26
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.15
KOG3924	419	consensus Putative protein methyltransferase invol	96.0
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	95.97
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.91
PRK13699	227	putative methylase; Provisional	95.89
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	95.88
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.83
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.78
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	95.7
COG1565	370	Uncharacterized conserved protein [Function unknow	95.7
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	95.58
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.54
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.41
PRK13699	227	putative methylase; Provisional	95.34
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	95.23
PF03269	177	DUF268: Caenorhabditis protein of unknown function	95.18
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	94.89
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.87
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	94.87
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.79
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	94.68
KOG2671	421	consensus Putative RNA methylase [Replication, rec	94.65
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.64
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	94.57
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	94.42
PRK10458	467	DNA cytosine methylase; Provisional	94.3
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.07
PTZ00357	1072	methyltransferase; Provisional	93.72
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	93.68
PRK11524	284	putative methyltransferase; Provisional	93.66
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	93.53
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	93.52
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	93.17
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.05
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	92.76
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	92.64
COG3315	297	O-Methyltransferase involved in polyketide biosynt	92.57
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	91.66
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	91.48
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	91.45
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	91.25
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.13
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	91.07
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	90.91
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	90.65
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	90.48
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	89.99
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	89.85
KOG1227	351	consensus Putative methyltransferase [General func	89.53
PRK03659	601	glutathione-regulated potassium-efflux system prot	89.34
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	89.2
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	89.2
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	89.02
PRK03562	621	glutathione-regulated potassium-efflux system prot	88.87
TIGR00497	501	hsdM type I restriction system adenine methylase (	88.67
PRK10669	558	putative cation:proton antiport protein; Provision	87.75
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	87.58
KOG2078	495	consensus tRNA modification enzyme [RNA processing	87.09
COG1255	129	Uncharacterized protein conserved in archaea [Func	87.09
COG1568	354	Predicted methyltransferases [General function pre	86.77
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	86.47
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	86.42
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	86.36
PLN02740	381	Alcohol dehydrogenase-like	86.12
COG2933	358	Predicted SAM-dependent methyltransferase [General	86.08
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	85.76
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	85.61
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	85.54
PRK09496	453	trkA potassium transporter peripheral membrane com	85.51
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	84.73
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	84.7
KOG2352	482	consensus Predicted spermine/spermidine synthase [	84.2
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	83.74
PRK07417	279	arogenate dehydrogenase; Reviewed	83.69
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	83.37
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	83.22
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	83.06
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	82.84
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	82.73
PLN02586	360	probable cinnamyl alcohol dehydrogenase	82.49
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	82.06
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	81.86
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	81.73
KOG2912	419	consensus Predicted DNA methylase [Function unknow	81.56
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	81.45
COG0863	302	DNA modification methylase [DNA replication, recom	81.13
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	81.05
PLN02827	378	Alcohol dehydrogenase-like	80.52
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	80.24

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.93  E-value=1.7e-25  Score=175.45  Aligned_cols=190  Identities=55%  Similarity=0.919  Sum_probs=159.9

Q ss_pred             CCCcccchhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc
Q 027388           27 DSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK  106 (224)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~  106 (224)
                      +......+.+..+-..++.||+.........|..++++.++.+..|+++++.+....+++.++++|||-|+.++.+.+.+
T Consensus        60 d~~e~e~~~~~~~~~~Va~HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAg  139 (389)
T KOG1975|consen   60 DRPEIEMEANESKSSEVAEHYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAG  139 (389)
T ss_pred             cchhhHhhhccchhHHHHHHHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhc
Confidence            33344445566678899999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc-cCCCCCeeEEEEccccccccCCHHHH
Q 027388          107 IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV-LADDAPFDICSCQFAMHYSWSTEARA  185 (224)
Q Consensus       107 ~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~~D~i~~~~~l~~~~~~~~~~  185 (224)
                      ...++|+|+....++.|+++...-  . .........+.|+.+|.....+.+. +..+.+||+|-|.+++||.|.+.+..
T Consensus       140 I~~~igiDIAevSI~qa~~RYrdm--~-~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~a  216 (389)
T KOG1975|consen  140 IGEYIGIDIAEVSINQARKRYRDM--K-NRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESA  216 (389)
T ss_pred             ccceEeeehhhccHHHHHHHHHHH--H-hhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHH
Confidence            999999999999999999997510  0 0011223457899999765444333 22344599999999999999999999


Q ss_pred             HHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhc
Q 027388          186 RRALANVSALLRPGGTFIGTMPDANVIIKKLREE  219 (224)
Q Consensus       186 ~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~  219 (224)
                      .-+++++.+.|+|||++|.++|+.+.|+..+++.
T Consensus       217 r~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  217 RIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG  250 (389)
T ss_pred             HHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence            9999999999999999999999999999999876

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.91  E-value=6.7e-24  Score=164.20  Aligned_cols=144  Identities=26%  Similarity=0.465  Sum_probs=124.8

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVG  112 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~g  112 (224)
                      +.....|++++..|+.. .         .+.++...+.|.+.++..+...+|.+|||+|||||.++..+++. +.++++|
T Consensus        11 ~~v~~vF~~ia~~YD~~-n---------~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~   80 (238)
T COG2226          11 EKVQKVFDKVAKKYDLM-N---------DLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVG   80 (238)
T ss_pred             HHHHHHHHhhHHHHHhh-c---------ccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEE
Confidence            56778999999999842 2         34477889999999998887778999999999999999998864 4579999


Q ss_pred             EeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHH
Q 027388          113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV  192 (224)
Q Consensus       113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~  192 (224)
                      +|+|+.|++.+++++...        +... +.|+++|++++|+     ++++||+|++.+.|.++    ++..++|+++
T Consensus        81 ~D~s~~ML~~a~~k~~~~--------~~~~-i~fv~~dAe~LPf-----~D~sFD~vt~~fglrnv----~d~~~aL~E~  142 (238)
T COG2226          81 LDISESMLEVAREKLKKK--------GVQN-VEFVVGDAENLPF-----PDNSFDAVTISFGLRNV----TDIDKALKEM  142 (238)
T ss_pred             EECCHHHHHHHHHHhhcc--------Cccc-eEEEEechhhCCC-----CCCccCEEEeeehhhcC----CCHHHHHHHH
Confidence            999999999999998732        2233 8999999999998     78999999999999998    7899999999


Q ss_pred             HhhccCCeEEEEE
Q 027388          193 SALLRPGGTFIGT  205 (224)
Q Consensus       193 ~~~lk~gG~li~~  205 (224)
                      .|+|||||++++.
T Consensus       143 ~RVlKpgG~~~vl  155 (238)
T COG2226         143 YRVLKPGGRLLVL  155 (238)
T ss_pred             HHhhcCCeEEEEE
Confidence            9999999987764

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.89  E-value=8e-23  Score=166.62  Aligned_cols=182  Identities=52%  Similarity=0.923  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHhhhccccc--hhhhccCCceehhhhHHHHHHHHHHHhhc------CCCeEEEecCCCchhHHHHHhhcCC
Q 027388           37 KVFARKVADHYSRRTNQT--LEEREASPIIHLKKLNNWIKSVLVQLYAR------RGDVVLDLACGKGGDLIKWDKAKIG  108 (224)
Q Consensus        37 ~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iLDiGcG~G~~~~~l~~~~~~  108 (224)
                      ...-+.++.+|+......  ...+..+++..++.+..|+++++.+....      ++.+|||+|||.|+.+..|......
T Consensus         7 ~~~~~~v~~hYn~~~~~~~~~~~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~   86 (331)
T PF03291_consen    7 SDVTDVVAEHYNQRPEVGIDLKERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIK   86 (331)
T ss_dssp             ---------------------------TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-S
T ss_pred             ccHHHHHHHHHhccccccchhhhhhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCC
Confidence            445667889999887666  77888999999999999999999988777      8899999999999999999888889


Q ss_pred             eEEEEeCChhHHHHHHHhccCCcc-cccccccCCCCeeEEeccccccccccccCC-CCCeeEEEEccccccccCCHHHHH
Q 027388          109 YYVGIDIAEGSIEDCRTRYNGDAD-HHQRRKKFSFPARLICGDCYEVHLDKVLAD-DAPFDICSCQFAMHYSWSTEARAR  186 (224)
Q Consensus       109 ~~~gvD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~~D~i~~~~~l~~~~~~~~~~~  186 (224)
                      .++|+|++...++.|+++...... .+...........++.+|.....+...... ..+||+|-|.+++||.+.+.....
T Consensus        87 ~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar  166 (331)
T PF03291_consen   87 HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKAR  166 (331)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHH
Confidence            999999999999999999831100 000111223446788888765443322212 369999999999999999999999


Q ss_pred             HHHHHHHhhccCCeEEEEEeCChHHHHHHhhh
Q 027388          187 RALANVSALLRPGGTFIGTMPDANVIIKKLRE  218 (224)
Q Consensus       187 ~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~  218 (224)
                      .+|+.+.+.|+|||++|.++|+.+.|...+++
T Consensus       167 ~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~  198 (331)
T PF03291_consen  167 QFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE  198 (331)
T ss_dssp             HHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred             HHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence            99999999999999999999999999887776

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.89  E-value=6.5e-23  Score=160.10  Aligned_cols=144  Identities=26%  Similarity=0.522  Sum_probs=84.8

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYV  111 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~  111 (224)
                      ...+..|++++..|+.. ..         +.++.....|.+.++......++.+|||+|||||.++..+++.  ..++++
T Consensus         7 ~~v~~~Fd~ia~~YD~~-n~---------~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~   76 (233)
T PF01209_consen    7 QYVRKMFDRIAPRYDRM-ND---------LLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVV   76 (233)
T ss_dssp             ----------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEE
T ss_pred             HHHHHHHHHHHHHhCCC-cc---------ccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEE
Confidence            45678999999999843 22         2255666777777777667788899999999999999988764  246899


Q ss_pred             EEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHH
Q 027388          112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN  191 (224)
Q Consensus       112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~  191 (224)
                      |+|+|+.|++.|+++....        ... +++++++|+++++.     ++++||+|++.+.++++    +++.+++++
T Consensus        77 ~vD~s~~ML~~a~~k~~~~--------~~~-~i~~v~~da~~lp~-----~d~sfD~v~~~fglrn~----~d~~~~l~E  138 (233)
T PF01209_consen   77 GVDISPGMLEVARKKLKRE--------GLQ-NIEFVQGDAEDLPF-----PDNSFDAVTCSFGLRNF----PDRERALRE  138 (233)
T ss_dssp             EEES-HHHHHHHHHHHHHT--------T---SEEEEE-BTTB--S------TT-EEEEEEES-GGG-----SSHHHHHHH
T ss_pred             EecCCHHHHHHHHHHHHhh--------CCC-CeeEEEcCHHHhcC-----CCCceeEEEHHhhHHhh----CCHHHHHHH
Confidence            9999999999999997621        222 69999999999998     68999999999999987    678899999


Q ss_pred             HHhhccCCeEEEEE
Q 027388          192 VSALLRPGGTFIGT  205 (224)
Q Consensus       192 ~~~~lk~gG~li~~  205 (224)
                      +.|+|||||.+++.
T Consensus       139 ~~RVLkPGG~l~il  152 (233)
T PF01209_consen  139 MYRVLKPGGRLVIL  152 (233)
T ss_dssp             HHHHEEEEEEEEEE
T ss_pred             HHHHcCCCeEEEEe
Confidence            99999999988763

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.87  E-value=8.3e-21  Score=151.25  Aligned_cols=147  Identities=21%  Similarity=0.328  Sum_probs=110.9

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYV  111 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~  111 (224)
                      ...+++|+.++..|+..... .         ++.....|....+......++.+|||+|||+|.++..+++..  ..+++
T Consensus        33 ~~v~~~f~~~A~~YD~~~~~-~---------s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~  102 (261)
T PLN02233         33 NERQALFNRIAPVYDNLNDL-L---------SLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVM  102 (261)
T ss_pred             HHHHHHHHHhhhHHHHhhhh-h---------cCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEE
Confidence            45677999999999842211 1         122233444444444455678899999999999988877542  35899


Q ss_pred             EEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHH
Q 027388          112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN  191 (224)
Q Consensus       112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~  191 (224)
                      |+|+|+.|++.|+++....      ......++.++++|+.++++     ++++||+|++.++++++    +++..++++
T Consensus       103 gvD~S~~ml~~A~~r~~~~------~~~~~~~i~~~~~d~~~lp~-----~~~sfD~V~~~~~l~~~----~d~~~~l~e  167 (261)
T PLN02233        103 GLDFSSEQLAVAASRQELK------AKSCYKNIEWIEGDATDLPF-----DDCYFDAITMGYGLRNV----VDRLKAMQE  167 (261)
T ss_pred             EEECCHHHHHHHHHHhhhh------hhccCCCeEEEEcccccCCC-----CCCCEeEEEEecccccC----CCHHHHHHH
Confidence            9999999999998775310      11223468999999998877     57899999999999988    678999999


Q ss_pred             HHhhccCCeEEEEE
Q 027388          192 VSALLRPGGTFIGT  205 (224)
Q Consensus       192 ~~~~lk~gG~li~~  205 (224)
                      +.++|||||.+++.
T Consensus       168 i~rvLkpGG~l~i~  181 (261)
T PLN02233        168 MYRVLKPGSRVSIL  181 (261)
T ss_pred             HHHHcCcCcEEEEE
Confidence            99999999998875

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.86  E-value=1.4e-20  Score=153.11  Aligned_cols=108  Identities=16%  Similarity=0.197  Sum_probs=91.1

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ++.+|||||||+|.++..++. ...+|+|||+|+.+++.|+.+...        .....++.++++++++++.     ..
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~--------~~~~~~i~~~~~dae~l~~-----~~  196 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADM--------DPVTSTIEYLCTTAEKLAD-----EG  196 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHh--------cCcccceeEEecCHHHhhh-----cc
Confidence            567999999999999988875 446899999999999999987541        1223468999999887765     45


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      ++||+|++..+++|+    .++..+++++.++|||||.++++++|.
T Consensus       197 ~~FD~Vi~~~vLeHv----~d~~~~L~~l~r~LkPGG~liist~nr  238 (322)
T PLN02396        197 RKFDAVLSLEVIEHV----ANPAEFCKSLSALTIPNGATVLSTINR  238 (322)
T ss_pred             CCCCEEEEhhHHHhc----CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence            799999999999998    677899999999999999999998764

>PLN02244 tocopherol O-methyltransferase

Probab=99.85  E-value=7.8e-20  Score=150.87  Aligned_cols=107  Identities=17%  Similarity=0.251  Sum_probs=92.5

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||||||+|.++..+++....+++|+|+|+.+++.++++..        ..++..++.++++|+.++++     +
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~--------~~g~~~~v~~~~~D~~~~~~-----~  183 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAA--------AQGLSDKVSFQVADALNQPF-----E  183 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH--------hcCCCCceEEEEcCcccCCC-----C
Confidence            5678999999999999998886656799999999999999998765        23445579999999988776     5


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      +++||+|++..+++|+    .+...+++++.++|||||.|++.+
T Consensus       184 ~~~FD~V~s~~~~~h~----~d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        184 DGQFDLVWSMESGEHM----PDKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             CCCccEEEECCchhcc----CCHHHHHHHHHHHcCCCcEEEEEE
Confidence            7899999999999998    567899999999999999999853

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.84  E-value=1.1e-19  Score=142.70  Aligned_cols=144  Identities=22%  Similarity=0.443  Sum_probs=114.4

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYV  111 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~  111 (224)
                      .....+|+.++..|+....          +.++.....|.+.++..+...++.+|||+|||+|.++..+++.  ...+++
T Consensus         5 ~~~~~~f~~~a~~yd~~~~----------~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~   74 (231)
T TIGR02752         5 ERVHKVFEKIYKKYDRMNS----------VISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVI   74 (231)
T ss_pred             HHHHHHHHHhhhHHhHHHH----------HhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEE
Confidence            4567899999999985321          1134556667777777666677899999999999999988764  245899


Q ss_pred             EEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHH
Q 027388          112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN  191 (224)
Q Consensus       112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~  191 (224)
                      |+|+|+.+++.+++++..        ... .++.++++|+.+.+.     +.++||+|++..+++++    ++...++++
T Consensus        75 gvD~s~~~~~~a~~~~~~--------~~~-~~v~~~~~d~~~~~~-----~~~~fD~V~~~~~l~~~----~~~~~~l~~  136 (231)
T TIGR02752        75 GLDFSENMLSVGRQKVKD--------AGL-HNVELVHGNAMELPF-----DDNSFDYVTIGFGLRNV----PDYMQVLRE  136 (231)
T ss_pred             EEECCHHHHHHHHHHHHh--------cCC-CceEEEEechhcCCC-----CCCCccEEEEecccccC----CCHHHHHHH
Confidence            999999999999988752        122 358999999987765     46799999999999887    567889999


Q ss_pred             HHhhccCCeEEEEE
Q 027388          192 VSALLRPGGTFIGT  205 (224)
Q Consensus       192 ~~~~lk~gG~li~~  205 (224)
                      +.++|+|||.+++.
T Consensus       137 ~~~~Lk~gG~l~~~  150 (231)
T TIGR02752       137 MYRVVKPGGKVVCL  150 (231)
T ss_pred             HHHHcCcCeEEEEE
Confidence            99999999999875

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.84  E-value=1.9e-20  Score=142.84  Aligned_cols=108  Identities=19%  Similarity=0.263  Sum_probs=93.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ..+.+|||+|||.|.++..++..+ ..|+|+|+|+.+++.|+.+....          +.++.+.+..++++..     .
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~----------gv~i~y~~~~~edl~~-----~  121 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALES----------GVNIDYRQATVEDLAS-----A  121 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhc----------cccccchhhhHHHHHh-----c
Confidence            478999999999999999998666 69999999999999999987622          3336677777777654     3


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~  210 (224)
                      .++||+|+|..+++|+    +++..+++.|.+.+||||.++++++|..
T Consensus       122 ~~~FDvV~cmEVlEHv----~dp~~~~~~c~~lvkP~G~lf~STinrt  165 (243)
T COG2227         122 GGQFDVVTCMEVLEHV----PDPESFLRACAKLVKPGGILFLSTINRT  165 (243)
T ss_pred             CCCccEEEEhhHHHcc----CCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence            4899999999999999    7888999999999999999999999854

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.82  E-value=1.6e-19  Score=125.84  Aligned_cols=110  Identities=31%  Similarity=0.469  Sum_probs=89.5

Q ss_pred             CCCeEEEecCCCchhHHHHHh-hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~-~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ++.+|||||||+|.++..+++ ....+++|+|+|+.+++.+++++.        ......+++++++|+ .....    .
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~i~~~~~d~-~~~~~----~   67 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAA--------EEGLSDRITFVQGDA-EFDPD----F   67 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHH--------HTTTTTTEEEEESCC-HGGTT----T
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH--------hcCCCCCeEEEECcc-ccCcc----c
Confidence            578999999999999999987 366789999999999999999984        235567899999999 22221    3


Q ss_pred             CCCeeEEEEcc-ccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          163 DAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       163 ~~~~D~i~~~~-~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .++||+|++.. ++++++ ..++...+++.+.+.|+|||+|++.++
T Consensus        68 ~~~~D~v~~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   68 LEPFDLVICSGFTLHFLL-PLDERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             SSCEEEEEECSGSGGGCC-HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             CCCCCEEEECCCcccccc-chhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            56799999999 555442 236789999999999999999999863

...

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.82  E-value=2.1e-19  Score=121.15  Aligned_cols=95  Identities=27%  Similarity=0.439  Sum_probs=83.0

Q ss_pred             EEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeE
Q 027388           89 LDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDI  168 (224)
Q Consensus        89 LDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~  168 (224)
                      ||+|||+|..+..+++....+++++|+++.+++.++++..            ...+.+.++|+.+++.     ++++||+
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~------------~~~~~~~~~d~~~l~~-----~~~sfD~   63 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK------------NEGVSFRQGDAEDLPF-----PDNSFDV   63 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT------------TSTEEEEESBTTSSSS------TT-EEE
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc------------ccCchheeehHHhCcc-----ccccccc
Confidence            8999999999999987757799999999999999999987            4446699999999987     6899999


Q ss_pred             EEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          169 CSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       169 i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      |++..+++|+    +++..+++++.|+|||||++++
T Consensus        64 v~~~~~~~~~----~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   64 VFSNSVLHHL----EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EEEESHGGGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccceeec----cCHHHHHHHHHHHcCcCeEEeC
Confidence            9999999998    8899999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.81  E-value=1.4e-18  Score=132.91  Aligned_cols=157  Identities=21%  Similarity=0.297  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-c------CCe
Q 027388           37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K------IGY  109 (224)
Q Consensus        37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~------~~~  109 (224)
                      ..-|..+|..|+- .++.+         ++...+-|-.-.+..+.+..+.++||++||||..+..+... .      ..+
T Consensus        63 ~~vF~~vA~~YD~-mND~m---------SlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~  132 (296)
T KOG1540|consen   63 HHVFESVAKKYDI-MNDAM---------SLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESK  132 (296)
T ss_pred             HHHHHHHHHHHHH-HHHHh---------hcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCce
Confidence            4577888888873 33332         44556667444556777888899999999999999988764 2      268


Q ss_pred             EEEEeCChhHHHHHHHhccCCcccccccccCCC--CeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHH
Q 027388          110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF--PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARR  187 (224)
Q Consensus       110 ~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~  187 (224)
                      |+++|++++|+..++++.+..        ++..  .+.++++|++++++     +++.||+.++.+.+.++    .++.+
T Consensus       133 V~v~Dinp~mL~vgkqRa~~~--------~l~~~~~~~w~~~dAE~LpF-----dd~s~D~yTiafGIRN~----th~~k  195 (296)
T KOG1540|consen  133 VTVLDINPHMLAVGKQRAKKR--------PLKASSRVEWVEGDAEDLPF-----DDDSFDAYTIAFGIRNV----THIQK  195 (296)
T ss_pred             EEEEeCCHHHHHHHHHHHhhc--------CCCcCCceEEEeCCcccCCC-----CCCcceeEEEecceecC----CCHHH
Confidence            999999999999999998632        3333  38999999999998     78999999999999988    78999


Q ss_pred             HHHHHHhhccCCeEEEEEe-CChH-HHHHHhhhcc
Q 027388          188 ALANVSALLRPGGTFIGTM-PDAN-VIIKKLREEH  220 (224)
Q Consensus       188 ~l~~~~~~lk~gG~li~~~-~~~~-~~~~~~~~~g  220 (224)
                      .+++.+|+|||||+|.+-. +..+ ..+..|-+++
T Consensus       196 ~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~y  230 (296)
T KOG1540|consen  196 ALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQY  230 (296)
T ss_pred             HHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhh
Confidence            9999999999999877643 3333 3444444443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.81  E-value=3.2e-19  Score=141.99  Aligned_cols=149  Identities=20%  Similarity=0.228  Sum_probs=108.9

Q ss_pred             HHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCCh
Q 027388           38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE  117 (224)
Q Consensus        38 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~  117 (224)
                      +.|++++.+|.+........+...     .-...-+..++..+. .++.+|||+|||+|.++..++.. ..+|+++|+|+
T Consensus         4 ~~fd~~a~~f~~~~y~~~~g~~r~-----~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~   76 (255)
T PRK11036          4 RNFDDIAEKFSRNIYGTTKGQIRQ-----AILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSA   76 (255)
T ss_pred             CChhhHHHHHHHhccCCCccHHHH-----HHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCH
Confidence            578899999987555443222110     111111223333332 45679999999999999998765 46899999999


Q ss_pred             hHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhcc
Q 027388          118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR  197 (224)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk  197 (224)
                      .|++.|+++..        ..++..+++++++|+.++...    ..++||+|++..+++|+    .++..++.++.++||
T Consensus        77 ~~l~~a~~~~~--------~~g~~~~v~~~~~d~~~l~~~----~~~~fD~V~~~~vl~~~----~~~~~~l~~~~~~Lk  140 (255)
T PRK11036         77 EMIQRAKQAAE--------AKGVSDNMQFIHCAAQDIAQH----LETPVDLILFHAVLEWV----ADPKSVLQTLWSVLR  140 (255)
T ss_pred             HHHHHHHHHHH--------hcCCccceEEEEcCHHHHhhh----cCCCCCEEEehhHHHhh----CCHHHHHHHHHHHcC
Confidence            99999999876        234455689999998776421    35789999999999998    567789999999999


Q ss_pred             CCeEEEEEeCCh
Q 027388          198 PGGTFIGTMPDA  209 (224)
Q Consensus       198 ~gG~li~~~~~~  209 (224)
                      |||+|++...+.
T Consensus       141 pgG~l~i~~~n~  152 (255)
T PRK11036        141 PGGALSLMFYNA  152 (255)
T ss_pred             CCeEEEEEEECc
Confidence            999998875553

>PRK05785 hypothetical protein; Provisional

Probab=99.80  E-value=1.5e-18  Score=135.44  Aligned_cols=139  Identities=23%  Similarity=0.324  Sum_probs=104.2

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHh--hcCCCeEEEecCCCchhHHHHHhhcCCeEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY--ARRGDVVLDLACGKGGDLIKWDKAKIGYYV  111 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~  111 (224)
                      ....+.|+.++..|+.... .         .++.....|.+.++..+.  ..++.+|||+|||||.++..++.....+++
T Consensus         9 ~~v~~~f~~iA~~YD~~n~-~---------~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~   78 (226)
T PRK05785          9 EELQEAYNKIPKAYDRANR-F---------ISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVV   78 (226)
T ss_pred             HHHHHHHHhhhHHHHHhhh-h---------ccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEE
Confidence            4567899999999985321 1         122334456555555432  235789999999999999888755446899


Q ss_pred             EEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHH
Q 027388          112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN  191 (224)
Q Consensus       112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~  191 (224)
                      |+|+|+.|++.|++.                 ..++++|++++++     ++++||+|++.++++++    +++.+++++
T Consensus        79 gvD~S~~Ml~~a~~~-----------------~~~~~~d~~~lp~-----~d~sfD~v~~~~~l~~~----~d~~~~l~e  132 (226)
T PRK05785         79 ALDYAENMLKMNLVA-----------------DDKVVGSFEALPF-----RDKSFDVVMSSFALHAS----DNIEKVIAE  132 (226)
T ss_pred             EECCCHHHHHHHHhc-----------------cceEEechhhCCC-----CCCCEEEEEecChhhcc----CCHHHHHHH
Confidence            999999999999764                 1356888888876     67899999999999987    678999999


Q ss_pred             HHhhccCCe-EEEEEeCC
Q 027388          192 VSALLRPGG-TFIGTMPD  208 (224)
Q Consensus       192 ~~~~lk~gG-~li~~~~~  208 (224)
                      +.++|||.+ ++-+..|+
T Consensus       133 ~~RvLkp~~~ile~~~p~  150 (226)
T PRK05785        133 FTRVSRKQVGFIAMGKPD  150 (226)
T ss_pred             HHHHhcCceEEEEeCCCC
Confidence            999999953 34444554

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.80  E-value=2.2e-18  Score=136.87  Aligned_cols=137  Identities=21%  Similarity=0.333  Sum_probs=103.6

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv  113 (224)
                      ......|++.+..|+....               ........++..+...++.+|||+|||+|.++..+.. ....++++
T Consensus         7 ~~i~~~F~~aa~~Y~~~~~---------------~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~   70 (251)
T PRK10258          7 QAIAAAFGRAAAHYEQHAE---------------LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRE-RGSQVTAL   70 (251)
T ss_pred             HHHHHHHHHHHHhHhHHHH---------------HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHH-cCCeEEEE
Confidence            3455678888888873110               1111222233333334568999999999998888764 45689999


Q ss_pred             eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHH
Q 027388          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS  193 (224)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~  193 (224)
                      |+|+.|++.++++..              ...++++|+..++.     ..++||+|+++.+++|+    .++..++.++.
T Consensus        71 D~s~~~l~~a~~~~~--------------~~~~~~~d~~~~~~-----~~~~fD~V~s~~~l~~~----~d~~~~l~~~~  127 (251)
T PRK10258         71 DLSPPMLAQARQKDA--------------ADHYLAGDIESLPL-----ATATFDLAWSNLAVQWC----GNLSTALRELY  127 (251)
T ss_pred             ECCHHHHHHHHhhCC--------------CCCEEEcCcccCcC-----CCCcEEEEEECchhhhc----CCHHHHHHHHH
Confidence            999999999988754              24678999988765     56789999999999987    67889999999


Q ss_pred             hhccCCeEEEEEeCCh
Q 027388          194 ALLRPGGTFIGTMPDA  209 (224)
Q Consensus       194 ~~lk~gG~li~~~~~~  209 (224)
                      ++|+|||.++++++..
T Consensus       128 ~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258        128 RVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             HHcCCCeEEEEEeCCC
Confidence            9999999999987654

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.79  E-value=4.8e-18  Score=135.55  Aligned_cols=115  Identities=18%  Similarity=0.249  Sum_probs=95.6

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ..++..+.+.++.+|||||||+|..+..++.....+|+++|+|+.+++.|+++...           ..++.+.++|+.+
T Consensus        42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-----------~~~i~~~~~D~~~  110 (263)
T PTZ00098         42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-----------KNKIEFEANDILK  110 (263)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-----------CCceEEEECCccc
Confidence            44555556678899999999999998888765556999999999999999988651           3458999999887


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      .+.     ++++||+|++..+++|+  +..++..+++++.++|||||.|++..
T Consensus       111 ~~~-----~~~~FD~V~s~~~l~h~--~~~d~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        111 KDF-----PENTFDMIYSRDAILHL--SYADKKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             CCC-----CCCCeEEEEEhhhHHhC--CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            665     56899999999888876  54588999999999999999999863

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.78  E-value=4.5e-18  Score=125.06  Aligned_cols=109  Identities=29%  Similarity=0.483  Sum_probs=91.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHh-h-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDK-A-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~-~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      .++.+|||+|||+|.++..++. . ...+++|+|+|+.+++.|++++..        .... +++++++|+.+++.. . 
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~--------~~~~-ni~~~~~d~~~l~~~-~-   70 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE--------LGLD-NIEFIQGDIEDLPQE-L-   70 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH--------TTST-TEEEEESBTTCGCGC-S-
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc--------cccc-ccceEEeehhccccc-c-
Confidence            4678999999999999999984 2 356899999999999999998762        2334 699999999986521 0 


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                       . +.||+|++..+++++    .+...+++++.++|++||.+++..+.
T Consensus        71 -~-~~~D~I~~~~~l~~~----~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   71 -E-EKFDIIISNGVLHHF----PDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             -S-TTEEEEEEESTGGGT----SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -C-CCeeEEEEcCchhhc----cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence             2 799999999999887    77889999999999999999998776

...

>TIGR00740 methyltransferase, putative

Probab=99.77  E-value=1.8e-17  Score=130.66  Aligned_cols=108  Identities=19%  Similarity=0.367  Sum_probs=90.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ..++.+|||+|||+|.++..+++.   ...+++|+|+|+.|++.|++++..        .....+++++++|+.+++.  
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~--  120 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA--------YHSEIPVEILCNDIRHVEI--  120 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh--------cCCCCCeEEEECChhhCCC--
Confidence            356789999999999999888764   356899999999999999998762        2223468999999987764  


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                           ..+|+|++..+++|+  ...+...+++++.+.|+|||.|++..
T Consensus       121 -----~~~d~v~~~~~l~~~--~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       121 -----KNASMVILNFTLQFL--PPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             -----CCCCEEeeecchhhC--CHHHHHHHHHHHHHhcCCCeEEEEee
Confidence                 358999999999998  56678999999999999999999874

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.77  E-value=4.5e-18  Score=134.15  Aligned_cols=134  Identities=22%  Similarity=0.253  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      .++.++..+.+.+|.+|||||||.|.+++.+++....+|+|+++|+++.+.+++++.        ..++..++++...|.
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~--------~~gl~~~v~v~l~d~  131 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIA--------ARGLEDNVEVRLQDY  131 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHH--------HcCCCcccEEEeccc
Confidence            344456667889999999999999999999987777899999999999999999887        456666799999998


Q ss_pred             cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe---CC------hHHHHHHhhhcccc
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM---PD------ANVIIKKLREEHFC  222 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~---~~------~~~~~~~~~~~gf~  222 (224)
                      .++.        +.||-|++.++++|+  +......+|+.+.++|+|||.+++-+   +.      ...|...+.+.|++
T Consensus       132 rd~~--------e~fDrIvSvgmfEhv--g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~l  201 (283)
T COG2230         132 RDFE--------EPFDRIVSVGMFEHV--GKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGEL  201 (283)
T ss_pred             cccc--------cccceeeehhhHHHh--CcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcC
Confidence            8765        349999999999999  77889999999999999999988642   22      23455566666655


Q ss_pred             c
Q 027388          223 H  223 (224)
Q Consensus       223 ~  223 (224)
                      +
T Consensus       202 P  202 (283)
T COG2230         202 P  202 (283)
T ss_pred             C
Confidence            4

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.76  E-value=8.9e-18  Score=137.22  Aligned_cols=119  Identities=16%  Similarity=0.170  Sum_probs=96.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||||||+|.++..+++. ....++++|+|+.|++.|+++..            ..++.++.+|+.+++.     
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------------~~~i~~i~gD~e~lp~-----  174 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------------LKECKIIEGDAEDLPF-----  174 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------------ccCCeEEeccHHhCCC-----
Confidence            45789999999999988887654 34689999999999999998754            2357889999988776     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC-------------------ChHHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP-------------------DANVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~-------------------~~~~~~~~~~~~gf~  222 (224)
                      ..+.||+|++..+++++    .+...+++++.++|+|||.+++..+                   ..+.+.+.++++||.
T Consensus       175 ~~~sFDvVIs~~~L~~~----~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~  250 (340)
T PLN02490        175 PTDYADRYVSAGSIEYW----PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFK  250 (340)
T ss_pred             CCCceeEEEEcChhhhC----CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCe
Confidence            46789999999999987    4567899999999999999877421                   235667788888885

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.75  E-value=2.7e-18  Score=132.04  Aligned_cols=109  Identities=21%  Similarity=0.277  Sum_probs=89.1

Q ss_pred             CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      +++|||+|||+|.++..|++.+ ..|+|+|+++.|++.|+++......++   ..+..++.+.+.+++.+.        +
T Consensus        90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~---~~~~y~l~~~~~~~E~~~--------~  157 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLE---GAIAYRLEYEDTDVEGLT--------G  157 (282)
T ss_pred             CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhc---cccceeeehhhcchhhcc--------c
Confidence            4789999999999999998555 699999999999999999955332221   223334667777776553        4


Q ss_pred             CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      .||.|+|..+++|+    .++..++..+.++|+|||.|++++.|.
T Consensus       158 ~fDaVvcsevleHV----~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  158 KFDAVVCSEVLEHV----KDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             ccceeeeHHHHHHH----hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            69999999999999    899999999999999999999997763

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.75  E-value=2e-17  Score=135.29  Aligned_cols=109  Identities=20%  Similarity=0.181  Sum_probs=87.1

Q ss_pred             HHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      .+....+++|||||||+|.++..++..+...|+|+|+|+.++..++.....        .....++.++.+++.+++.  
T Consensus       117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~--------~~~~~~i~~~~~d~e~lp~--  186 (322)
T PRK15068        117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKL--------LGNDQRAHLLPLGIEQLPA--  186 (322)
T ss_pred             hhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHh--------cCCCCCeEEEeCCHHHCCC--
Confidence            333456789999999999999998877766799999999998764432110        0113468999999987764  


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                          .+.||+|+|..+++|+    .++..+++++++.|+|||.+++.
T Consensus       187 ----~~~FD~V~s~~vl~H~----~dp~~~L~~l~~~LkpGG~lvl~  225 (322)
T PRK15068        187 ----LKAFDTVFSMGVLYHR----RSPLDHLKQLKDQLVPGGELVLE  225 (322)
T ss_pred             ----cCCcCEEEECChhhcc----CCHHHHHHHHHHhcCCCcEEEEE
Confidence                4789999999999997    67789999999999999999975

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.75  E-value=2.4e-17  Score=130.50  Aligned_cols=108  Identities=21%  Similarity=0.393  Sum_probs=89.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ..++.+|||||||+|..+..++..   ...+++|+|+|+.|++.|++++..        .+...++.++++|+.+++.  
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~--------~~~~~~v~~~~~d~~~~~~--  123 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA--------YKAPTPVDVIEGDIRDIAI--  123 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh--------cCCCCCeEEEeCChhhCCC--
Confidence            457789999999999998887652   356899999999999999999762        2334468999999877654  


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                           ..+|+|+++.+++++  ...+...+++++.+.|+|||.|++..
T Consensus       124 -----~~~D~vv~~~~l~~l--~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        124 -----ENASMVVLNFTLQFL--EPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             -----CCCCEEehhhHHHhC--CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                 358999999999988  55677899999999999999999863

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.75  E-value=2.3e-17  Score=126.25  Aligned_cols=105  Identities=16%  Similarity=0.180  Sum_probs=86.5

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.+++....        .++ .++.+.+.|+.+.+.     
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~--------~~~-~~v~~~~~d~~~~~~-----   92 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAA--------ENL-DNLHTAVVDLNNLTF-----   92 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHH--------cCC-CcceEEecChhhCCc-----
Confidence            346789999999999999998865 45899999999999999988762        222 247888888876654     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                       .++||+|+++.+++++  +..+...+++++.++|+|||++++
T Consensus        93 -~~~fD~I~~~~~~~~~--~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         93 -DGEYDFILSTVVLMFL--EAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             -CCCcCEEEEecchhhC--CHHHHHHHHHHHHHHcCCCcEEEE
Confidence             4679999999999887  567889999999999999998554

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.75  E-value=8.7e-17  Score=126.57  Aligned_cols=146  Identities=27%  Similarity=0.418  Sum_probs=110.2

Q ss_pred             chhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeE
Q 027388           33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYY  110 (224)
Q Consensus        33 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~  110 (224)
                      ......+|+.++..|+......          .......+...++......++.+|||+|||+|.++..++...  ..++
T Consensus        10 ~~~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v   79 (239)
T PRK00216         10 QEKVAEMFDSIAPKYDLMNDLL----------SFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEV   79 (239)
T ss_pred             hHHHHHHHHHhhhhHHHHHHHH----------hcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeE
Confidence            4566779999999997321110          011233444555555545567899999999999999887655  3799


Q ss_pred             EEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHH
Q 027388          111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA  190 (224)
Q Consensus       111 ~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~  190 (224)
                      +++|+++.+++.+++++..        .....++.++.+|+...+.     ..+.||+|++..+++++    .++..++.
T Consensus        80 ~~~D~s~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~~~~-----~~~~~D~I~~~~~l~~~----~~~~~~l~  142 (239)
T PRK00216         80 VGLDFSEGMLAVGREKLRD--------LGLSGNVEFVQGDAEALPF-----PDNSFDAVTIAFGLRNV----PDIDKALR  142 (239)
T ss_pred             EEEeCCHHHHHHHHHhhcc--------cccccCeEEEecccccCCC-----CCCCccEEEEecccccC----CCHHHHHH
Confidence            9999999999999998762        2234568899999887654     45789999999999887    56789999


Q ss_pred             HHHhhccCCeEEEEE
Q 027388          191 NVSALLRPGGTFIGT  205 (224)
Q Consensus       191 ~~~~~lk~gG~li~~  205 (224)
                      .+.++|+|||.+++.
T Consensus       143 ~~~~~L~~gG~li~~  157 (239)
T PRK00216        143 EMYRVLKPGGRLVIL  157 (239)
T ss_pred             HHHHhccCCcEEEEE
Confidence            999999999998764

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.75  E-value=1.7e-17  Score=132.49  Aligned_cols=115  Identities=23%  Similarity=0.271  Sum_probs=90.9

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..++..+.+.++.+|||||||.|.++..+++....+|+|+.+|+...+.+++++.        ..++...+.+..+|..
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~--------~~gl~~~v~v~~~D~~  122 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIR--------EAGLEDRVEVRLQDYR  122 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHH--------CSTSSSTEEEEES-GG
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHH--------hcCCCCceEEEEeecc
Confidence            44445566788999999999999999999998767799999999999999999987        4566778999999987


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +++        .+||.|++.++++|+  +......+++.+.++|+|||.+++.
T Consensus       123 ~~~--------~~fD~IvSi~~~Ehv--g~~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  123 DLP--------GKFDRIVSIEMFEHV--GRKNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             G-----------S-SEEEEESEGGGT--CGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred             ccC--------CCCCEEEEEechhhc--ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            653        489999999999998  7778899999999999999999875

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.75  E-value=6.8e-17  Score=139.47  Aligned_cols=112  Identities=21%  Similarity=0.266  Sum_probs=93.2

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ++..+...++.+|||||||+|..+..++.....+++|+|+|+.+++.|+++..          ....++.+.++|+...+
T Consensus       258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~----------~~~~~v~~~~~d~~~~~  327 (475)
T PLN02336        258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI----------GRKCSVEFEVADCTKKT  327 (475)
T ss_pred             HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh----------cCCCceEEEEcCcccCC
Confidence            34444456678999999999999988876556689999999999999988764          23446899999988766


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      +     +.++||+|++..+++|+    .++..+++++.++|+|||.|++..
T Consensus       328 ~-----~~~~fD~I~s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        328 Y-----PDNSFDVIYSRDTILHI----QDKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             C-----CCCCEEEEEECCccccc----CCHHHHHHHHHHHcCCCeEEEEEE
Confidence            5     45789999999999998    678899999999999999999874

>TIGR00452 methyltransferase, putative

Probab=99.74  E-value=9.9e-17  Score=130.10  Aligned_cols=110  Identities=17%  Similarity=0.082  Sum_probs=85.4

Q ss_pred             HHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           78 VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        78 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      ..+...++++|||||||+|.++..++..+...++|+|+|+.|+..++.....        .....++.+..+++.+++. 
T Consensus       115 ~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~--------~~~~~~v~~~~~~ie~lp~-  185 (314)
T TIGR00452       115 PHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKL--------LDNDKRAILEPLGIEQLHE-  185 (314)
T ss_pred             HhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHH--------hccCCCeEEEECCHHHCCC-
Confidence            3334567889999999999998888766666899999999998764322110        0112357788888877653 


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                           ...||+|+|.++++|+    .++..++++++++|+|||.|++.
T Consensus       186 -----~~~FD~V~s~gvL~H~----~dp~~~L~el~r~LkpGG~Lvle  224 (314)
T TIGR00452       186 -----LYAFDTVFSMGVLYHR----KSPLEHLKQLKHQLVIKGELVLE  224 (314)
T ss_pred             -----CCCcCEEEEcchhhcc----CCHHHHHHHHHHhcCCCCEEEEE
Confidence                 3589999999999998    67789999999999999999975

Known examples to date are restricted to the proteobacteria.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.74  E-value=2.4e-17  Score=131.17  Aligned_cols=106  Identities=20%  Similarity=0.252  Sum_probs=88.0

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      ++..+...++.+|||||||+|.++..++... ..+++|+|+|+.|++.|++.                ++.++++|+.++
T Consensus        21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------------~~~~~~~d~~~~   84 (255)
T PRK14103         21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------------GVDARTGDVRDW   84 (255)
T ss_pred             HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------------CCcEEEcChhhC
Confidence            4444445678899999999999999887653 45899999999999999753                267889998765


Q ss_pred             ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .      ..++||+|+++.+++|+    +++..+++++.++|||||.+++..+
T Consensus        85 ~------~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         85 K------PKPDTDVVVSNAALQWV----PEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             C------CCCCceEEEEehhhhhC----CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence            3      35789999999999998    5678999999999999999998754

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.73  E-value=2.7e-17  Score=112.51  Aligned_cols=96  Identities=26%  Similarity=0.489  Sum_probs=78.7

Q ss_pred             EEEecCCCchhHHHHHhhc----CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           88 VLDLACGKGGDLIKWDKAK----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        88 iLDiGcG~G~~~~~l~~~~----~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      |||+|||+|..+..+....    ..+++|+|+|+.|++.++++...          ...+++++++|+.+++.     ..
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~----------~~~~~~~~~~D~~~l~~-----~~   65 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE----------DGPKVRFVQADARDLPF-----SD   65 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH----------TTTTSEEEESCTTCHHH-----HS
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh----------cCCceEEEECCHhHCcc-----cC
Confidence            7999999999999987643    26899999999999999999862          12368999999988765     46


Q ss_pred             CCeeEEEEcc-ccccccCCHHHHHHHHHHHHhhccCCe
Q 027388          164 APFDICSCQF-AMHYSWSTEARARRALANVSALLRPGG  200 (224)
Q Consensus       164 ~~~D~i~~~~-~l~~~~~~~~~~~~~l~~~~~~lk~gG  200 (224)
                      ++||+|++.+ +++|+  +.++...+++++.++|+|||
T Consensus        66 ~~~D~v~~~~~~~~~~--~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   66 GKFDLVVCSGLSLHHL--SPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSEEEEEE-TTGGGGS--SHHHHHHHHHHHHHTEEEEE
T ss_pred             CCeeEEEEcCCccCCC--CHHHHHHHHHHHHHHhCCCC
Confidence            7999999955 48887  77899999999999999998

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.72  E-value=5.5e-17  Score=129.40  Aligned_cols=109  Identities=20%  Similarity=0.358  Sum_probs=90.6

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      ++..+...++.+|||||||+|.++..++.. ...+++|+|+|+.|++.++++..              ++.++.+|+.+.
T Consensus        23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~--------------~~~~~~~d~~~~   88 (258)
T PRK01683         23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP--------------DCQFVEADIASW   88 (258)
T ss_pred             HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC--------------CCeEEECchhcc
Confidence            444444567889999999999999988765 35689999999999999998754              378889998765


Q ss_pred             ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      .      ...+||+|+++.+++|+    .+...+++++.++|+|||.+++.+++
T Consensus        89 ~------~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683         89 Q------PPQALDLIFANASLQWL----PDHLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             C------CCCCccEEEEccChhhC----CCHHHHHHHHHHhcCCCcEEEEECCC
Confidence            3      24689999999999998    56789999999999999999998653

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.72  E-value=7.8e-17  Score=123.15  Aligned_cols=105  Identities=22%  Similarity=0.239  Sum_probs=84.0

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...++.+|||+|||+|.++..+++.+ ..|+++|+|+.+++.++++...        .++  ++.+..+|+...+.    
T Consensus        27 ~~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~--------~~~--~v~~~~~d~~~~~~----   91 (195)
T TIGR00477        27 KTVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKAR--------ENL--PLRTDAYDINAAAL----   91 (195)
T ss_pred             ccCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHH--------hCC--CceeEeccchhccc----
Confidence            34467899999999999999988654 5899999999999999887651        122  36677777755443    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                        .++||+|+++.+++++  +..+...+++.+.+.|+|||++++
T Consensus        92 --~~~fD~I~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477        92 --NEDYDFIFSTVVFMFL--QAGRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             --cCCCCEEEEecccccC--CHHHHHHHHHHHHHHhCCCcEEEE
Confidence              3579999999999887  556788999999999999998554

Part of a tellurite-reducing operon tehA and tehB

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.72  E-value=4.7e-16  Score=121.11  Aligned_cols=139  Identities=21%  Similarity=0.401  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcC--CeEEEEe
Q 027388           37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGID  114 (224)
Q Consensus        37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~gvD  114 (224)
                      .++|+.++.+|+......          .......|...++......++.+|||+|||+|.++..++....  .+++++|
T Consensus         2 ~~~~~~~~~~y~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD   71 (223)
T TIGR01934         2 QEMFDRIAPKYDLLNDLL----------SFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVD   71 (223)
T ss_pred             HhHHHHHHhhhhHHHHHH----------hcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEE
Confidence            467888999998542211          1122334555555555555788999999999999998876654  4899999


Q ss_pred             CChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHh
Q 027388          115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA  194 (224)
Q Consensus       115 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~  194 (224)
                      +++.+++.++++..           ...++.+..+|+.+.+.     ..+.||+|++..++++.    .++..+++++.+
T Consensus        72 ~~~~~~~~~~~~~~-----------~~~~i~~~~~d~~~~~~-----~~~~~D~i~~~~~~~~~----~~~~~~l~~~~~  131 (223)
T TIGR01934        72 FSSEMLEVAKKKSE-----------LPLNIEFIQADAEALPF-----EDNSFDAVTIAFGLRNV----TDIQKALREMYR  131 (223)
T ss_pred             CCHHHHHHHHHHhc-----------cCCCceEEecchhcCCC-----CCCcEEEEEEeeeeCCc----ccHHHHHHHHHH
Confidence            99999999988754           13458899999887664     45789999999999876    678899999999


Q ss_pred             hccCCeEEEEE
Q 027388          195 LLRPGGTFIGT  205 (224)
Q Consensus       195 ~lk~gG~li~~  205 (224)
                      .|+|||.+++.
T Consensus       132 ~L~~gG~l~~~  142 (223)
T TIGR01934       132 VLKPGGRLVIL  142 (223)
T ss_pred             HcCCCcEEEEE
Confidence            99999999874

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.71  E-value=1.3e-16  Score=117.95  Aligned_cols=99  Identities=27%  Similarity=0.432  Sum_probs=79.2

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..+...+. +++|+|+++.+++.  ..                 +.....+......     
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--~~-----------------~~~~~~~~~~~~~-----   74 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--RN-----------------VVFDNFDAQDPPF-----   74 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--TT-----------------SEEEEEECHTHHC-----
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--hh-----------------hhhhhhhhhhhhc-----
Confidence            46788999999999999998865444 99999999999988  11                 2222222222222     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      +.+.||+|+|+.+++|+    +++..+++++.++|||||++++.+++.
T Consensus        75 ~~~~fD~i~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   75 PDGSFDLIICNDVLEHL----PDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             HSSSEEEEEEESSGGGS----SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             cccchhhHhhHHHHhhc----ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            46899999999999999    579999999999999999999998864

...

>PRK08317 hypothetical protein; Provisional

Probab=99.71  E-value=5.6e-16  Score=121.87  Aligned_cols=113  Identities=27%  Similarity=0.427  Sum_probs=92.9

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ++......++.+|||+|||+|.++..++...  ..+++++|+|+.+++.++++..          ....++.+..+|+..
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~----------~~~~~~~~~~~d~~~   80 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA----------GLGPNVEFVRGDADG   80 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh----------CCCCceEEEeccccc
Confidence            4444556778899999999999999887653  4689999999999999988733          224468899999887


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .+.     ..+.||+|++..+++++    .++..+++++.++|+|||.+++..+
T Consensus        81 ~~~-----~~~~~D~v~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         81 LPF-----PDGSFDAVRSDRVLQHL----EDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             CCC-----CCCCceEEEEechhhcc----CCHHHHHHHHHHHhcCCcEEEEEec
Confidence            665     46789999999999987    6688999999999999999988654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.70  E-value=2.6e-16  Score=123.78  Aligned_cols=105  Identities=25%  Similarity=0.475  Sum_probs=89.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+.+|||+|||+|.++..++... ..+++++|+++.+++.++++..            . ++.++.+|+.+.+.     
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------------~-~~~~~~~d~~~~~~-----   94 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------------E-NVQFICGDAEKLPL-----   94 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------------C-CCeEEecchhhCCC-----
Confidence            345789999999999999887653 3568999999999999988764            1 47889999987765     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      ..++||+|++..+++|+    .++..++.++.++|+|||.+++..+..
T Consensus        95 ~~~~fD~vi~~~~l~~~----~~~~~~l~~~~~~L~~~G~l~~~~~~~  138 (240)
T TIGR02072        95 EDSSFDLIVSNLALQWC----DDLSQALSELARVLKPGGLLAFSTFGP  138 (240)
T ss_pred             CCCceeEEEEhhhhhhc----cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            46789999999999987    678899999999999999999987654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.70  E-value=3.4e-16  Score=114.03  Aligned_cols=142  Identities=23%  Similarity=0.324  Sum_probs=105.5

Q ss_pred             hhHHHHHHHHHHHhhcCCC-eEEEecCCCchhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCee
Q 027388           68 KLNNWIKSVLVQLYARRGD-VVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR  145 (224)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~-~iLDiGcG~G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~  145 (224)
                      ++..|+..........+.. +|||+|||+|.++..|++..+. .++|||.|+.+++.|+..+.        ..+..+.|+
T Consensus        50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe--------~~~~~n~I~  121 (227)
T KOG1271|consen   50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAE--------RDGFSNEIR  121 (227)
T ss_pred             HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHH--------hcCCCccee
Confidence            4455655554432334444 9999999999999999987655 49999999999999987766        345566699


Q ss_pred             EEeccccccccccccCCCCCeeEEEEcccccccc---C-CHHHHHHHHHHHHhhccCCeEEEEEeCCh--HHHHHHhhhc
Q 027388          146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW---S-TEARARRALANVSALLRPGGTFIGTMPDA--NVIIKKLREE  219 (224)
Q Consensus       146 ~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~---~-~~~~~~~~l~~~~~~lk~gG~li~~~~~~--~~~~~~~~~~  219 (224)
                      |.+.|+..-..     ..++||+|.--+.+.-+-   + ....+..++..+.++|+|||+++|+..|.  +.+.+.+.+.
T Consensus       122 f~q~DI~~~~~-----~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~  196 (227)
T KOG1271|consen  122 FQQLDITDPDF-----LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENF  196 (227)
T ss_pred             EEEeeccCCcc-----cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcC
Confidence            99999976544     468999998555433221   1 11223667899999999999999998885  8899999888


Q ss_pred             ccc
Q 027388          220 HFC  222 (224)
Q Consensus       220 gf~  222 (224)
                      ||.
T Consensus       197 ~f~  199 (227)
T KOG1271|consen  197 NFE  199 (227)
T ss_pred             CeE
Confidence            764

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.70  E-value=2.1e-16  Score=123.46  Aligned_cols=119  Identities=20%  Similarity=0.217  Sum_probs=96.4

Q ss_pred             CeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      ++|||||||+|.++..+++.. ..+++|+|+|+.+++.+++++.        ..++..++.++.+|+...+.      .+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~--------~~gl~~~i~~~~~d~~~~~~------~~   66 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIR--------ALGLQGRIRIFYRDSAKDPF------PD   66 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--------hcCCCcceEEEecccccCCC------CC
Confidence            479999999999999887654 4689999999999999999876        23456678999999866543      46


Q ss_pred             CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC------------------hHHHHHHhhhcccc
Q 027388          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD------------------ANVIIKKLREEHFC  222 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~------------------~~~~~~~~~~~gf~  222 (224)
                      .||+|++..+++|+    .+...+++++.++|+|||.+++..+.                  ...+...+.+.||.
T Consensus        67 ~fD~I~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~  138 (224)
T smart00828       67 TYDLVFGFEVIHHI----KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLR  138 (224)
T ss_pred             CCCEeehHHHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCe
Confidence            89999999999988    56789999999999999999986431                  24466677777764

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.70  E-value=6.2e-16  Score=118.73  Aligned_cols=100  Identities=14%  Similarity=0.183  Sum_probs=82.1

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++.+|||+|||+|.++..+... ...+++|+|+|+.+++.|+++..              ++.+.++|+.+ +.    
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--------------~~~~~~~d~~~-~~----  101 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--------------NINIIQGSLFD-PF----  101 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--------------CCcEEEeeccC-CC----
Confidence            356789999999999999988765 45789999999999999988654              36778888766 44    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       +.++||+|++..+++|+  +.++...+++++.++++  +.+++.
T Consensus       102 -~~~sfD~V~~~~vL~hl--~p~~~~~~l~el~r~~~--~~v~i~  141 (204)
T TIGR03587       102 -KDNFFDLVLTKGVLIHI--NPDNLPTAYRELYRCSN--RYILIA  141 (204)
T ss_pred             -CCCCEEEEEECChhhhC--CHHHHHHHHHHHHhhcC--cEEEEE
Confidence             57899999999999998  56788999999999983  455553

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.68  E-value=8.6e-16  Score=114.41  Aligned_cols=109  Identities=23%  Similarity=0.297  Sum_probs=85.3

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      +....-.++||+|||.|.++..|+.. ...++++|+|+..++.|++++..           ..+|.+.+.++.+..    
T Consensus        39 Lp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~-----------~~~V~~~~~dvp~~~----  102 (201)
T PF05401_consen   39 LPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG-----------LPHVEWIQADVPEFW----  102 (201)
T ss_dssp             HTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT------------SSEEEEES-TTT------
T ss_pred             cCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC-----------CCCeEEEECcCCCCC----
Confidence            44445578999999999999999754 46899999999999999999872           246999999987653    


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                        +.+.||+|+++.+++|+ +..+++..++..+...|+|||.|++.+.
T Consensus       103 --P~~~FDLIV~SEVlYYL-~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  103 --PEGRFDLIVLSEVLYYL-DDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             ---SS-EEEEEEES-GGGS-SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             --CCCCeeEEEEehHhHcC-CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence              57899999999999987 4457899999999999999999999754

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.68  E-value=6.6e-16  Score=124.09  Aligned_cols=106  Identities=21%  Similarity=0.375  Sum_probs=86.8

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-c-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      +.++.+|||+|||+|..+..++.. . ..+++++|+++.+++.|+++...        ... .++.++.+|+..++.   
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~--------~g~-~~v~~~~~d~~~l~~---  142 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK--------AGY-TNVEFRLGEIEALPV---  142 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH--------cCC-CCEEEEEcchhhCCC---
Confidence            467899999999999887766543 2 34799999999999999998652        122 358899999987765   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        +.+.||+|+++.++++.    .+...+++++.++|||||+|++.
T Consensus       143 --~~~~fD~Vi~~~v~~~~----~d~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        143 --ADNSVDVIISNCVINLS----PDKERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             --CCCceeEEEEcCcccCC----CCHHHHHHHHHHHcCCCcEEEEE
Confidence              46799999999999876    56678999999999999999985

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.68  E-value=5.7e-16  Score=116.49  Aligned_cols=106  Identities=16%  Similarity=0.269  Sum_probs=84.6

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...++.++||+|||.|+.+..++..+. .|+++|.|+..++.+++....        .  ...++..+.|+.+...    
T Consensus        27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~--------~--~l~i~~~~~Dl~~~~~----   91 (192)
T PF03848_consen   27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEE--------E--GLDIRTRVADLNDFDF----   91 (192)
T ss_dssp             TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHH--------T--T-TEEEEE-BGCCBS-----
T ss_pred             hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhh--------c--CceeEEEEecchhccc----
Confidence            344678999999999999999986666 899999999999998877652        1  3348899999887765    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ...||+|++..+++|+  ..+....++..+...++|||++++.
T Consensus        92 --~~~yD~I~st~v~~fL--~~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen   92 --PEEYDFIVSTVVFMFL--QRELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             --TTTEEEEEEESSGGGS---GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             --cCCcCEEEEEEEeccC--CHHHHHHHHHHHHhhcCCcEEEEEE
Confidence              4789999999999988  6667889999999999999998874

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.68  E-value=1.9e-16  Score=118.44  Aligned_cols=109  Identities=22%  Similarity=0.326  Sum_probs=95.4

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      ++.+.......+|.|+|||+|..+..+++.. ...++|+|-|+.|++.|++++.              +++|..+|+.+.
T Consensus        22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp--------------~~~f~~aDl~~w   87 (257)
T COG4106          22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP--------------DATFEEADLRTW   87 (257)
T ss_pred             HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC--------------CCceecccHhhc
Confidence            4555666788999999999999999888764 4578899999999999998876              589999999877


Q ss_pred             ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      .      +...+|+++++-+++|+    ++-..+|.++...|.|||+|-+.+|+
T Consensus        88 ~------p~~~~dllfaNAvlqWl----pdH~~ll~rL~~~L~Pgg~LAVQmPd  131 (257)
T COG4106          88 K------PEQPTDLLFANAVLQWL----PDHPELLPRLVSQLAPGGVLAVQMPD  131 (257)
T ss_pred             C------CCCccchhhhhhhhhhc----cccHHHHHHHHHhhCCCceEEEECCC
Confidence            5      46899999999999999    67788999999999999999999885

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.67  E-value=8.9e-16  Score=124.14  Aligned_cols=102  Identities=18%  Similarity=0.257  Sum_probs=84.9

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.++++...        .++  ++.+...|+.....      .
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~--------~~l--~v~~~~~D~~~~~~------~  182 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEK--------ENL--NIRTGLYDINSASI------Q  182 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHH--------cCC--ceEEEEechhcccc------c
Confidence            45699999999999999987654 5999999999999999988762        222  57888888765443      5


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      ++||+|++..+++++  +.++...+++++.+.|+|||++++
T Consensus       183 ~~fD~I~~~~vl~~l--~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        183 EEYDFILSTVVLMFL--NRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             CCccEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCcEEEE
Confidence            789999999999987  567889999999999999999665

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.66  E-value=1.8e-15  Score=126.49  Aligned_cols=109  Identities=21%  Similarity=0.251  Sum_probs=90.3

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ++..+...++.+|||||||+|.++..++.....+|+|+|+|+.+++.|+++..            ...+++..+|+..+ 
T Consensus       159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~------------~l~v~~~~~D~~~l-  225 (383)
T PRK11705        159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA------------GLPVEIRLQDYRDL-  225 (383)
T ss_pred             HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc------------cCeEEEEECchhhc-
Confidence            34445567889999999999999998876656699999999999999999875            22377778886543 


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                             .++||+|++..+++|+  +...+..+++++.++|+|||.+++.+
T Consensus       226 -------~~~fD~Ivs~~~~ehv--g~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        226 -------NGQFDRIVSVGMFEHV--GPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             -------CCCCCEEEEeCchhhC--ChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                   3689999999999987  56678899999999999999999864

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.66  E-value=4.9e-15  Score=111.95  Aligned_cols=105  Identities=22%  Similarity=0.237  Sum_probs=84.1

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..+++.+|||+|||+|..+..++.. ...+++++|+|+.+++.|+++...        .++. +++++++|+.++..   
T Consensus        42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~--------~~l~-~i~~~~~d~~~~~~---  109 (187)
T PRK00107         42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE--------LGLK-NVTVVHGRAEEFGQ---  109 (187)
T ss_pred             hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--------cCCC-CEEEEeccHhhCCC---
Confidence            3445889999999999988887753 456899999999999999998773        2333 38999999877542   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                         .++||+|++...        .++..+++.+.+.|+|||++++..+.
T Consensus       110 ---~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        110 ---EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             ---CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence               468999998752        34578999999999999999887553

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.65  E-value=4.6e-17  Score=110.97  Aligned_cols=98  Identities=24%  Similarity=0.338  Sum_probs=61.6

Q ss_pred             EEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCee
Q 027388           89 LDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD  167 (224)
Q Consensus        89 LDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D  167 (224)
                      ||||||+|.++..++.. ...+++++|+|+.|++.+++++...         ...+......+..+.....   ..++||
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~~~~fD   68 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL---------GNDNFERLRFDVLDLFDYD---PPESFD   68 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC---------T---EEEEE--SSS---CC---C----S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc---------CCcceeEEEeecCChhhcc---cccccc
Confidence            79999999999998865 4568999999999998888887621         1112333333333222100   136999


Q ss_pred             EEEEccccccccCCHHHHHHHHHHHHhhccCCeEE
Q 027388          168 ICSCQFAMHYSWSTEARARRALANVSALLRPGGTF  202 (224)
Q Consensus       168 ~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~l  202 (224)
                      +|++..+++|+    +++..+++++.+.|+|||+|
T Consensus        69 ~V~~~~vl~~l----~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   69 LVVASNVLHHL----EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             EEEEE-TTS------S-HHHHHHHHTTT-TSS-EE
T ss_pred             eehhhhhHhhh----hhHHHHHHHHHHHcCCCCCC
Confidence            99999999998    78889999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK06922 hypothetical protein; Provisional

Probab=99.65  E-value=2.1e-15  Score=130.81  Aligned_cols=111  Identities=22%  Similarity=0.308  Sum_probs=88.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||+|||+|..+..++.. ...+++|+|+|+.|++.|+++...          ...++.++++|+.+++.   ..
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~----------~g~~ie~I~gDa~dLp~---~f  483 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN----------EGRSWNVIKGDAINLSS---SF  483 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh----------cCCCeEEEEcchHhCcc---cc
Confidence            46789999999999988877654 456999999999999999987651          12357888999877551   01


Q ss_pred             CCCCeeEEEEccccccccC---------CHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          162 DDAPFDICSCQFAMHYSWS---------TEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~---------~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ++++||+|+++.++|+++.         ...++..+++++.++|||||.+++..
T Consensus       484 edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        484 EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            4678999999999887532         23578999999999999999999874

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.65  E-value=1.8e-15  Score=120.65  Aligned_cols=117  Identities=16%  Similarity=0.213  Sum_probs=86.4

Q ss_pred             CCCeEEEecCCCch----hHHHHHhhc------CCeEEEEeCChhHHHHHHHhccCCccc------------------cc
Q 027388           84 RGDVVLDLACGKGG----DLIKWDKAK------IGYYVGIDIAEGSIEDCRTRYNGDADH------------------HQ  135 (224)
Q Consensus        84 ~~~~iLDiGcG~G~----~~~~l~~~~------~~~~~gvD~s~~~~~~a~~~~~~~~~~------------------~~  135 (224)
                      ++.+|||+|||+|.    +++.+++..      ..+++|+|+|+.|++.|++........                  ..
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999997    344443321      347999999999999999865310000                  00


Q ss_pred             ccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ....+..++.|.+.|+.+.+.     +.++||+|+|.++++|+  +.++...+++++.+.|+|||+|++...
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~-----~~~~fD~I~crnvl~yf--~~~~~~~~l~~l~~~L~pGG~L~lg~~  243 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESP-----PLGDFDLIFCRNVLIYF--DEPTQRKLLNRFAEALKPGGYLFLGHS  243 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCC-----ccCCCCEEEechhHHhC--CHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence            001123468899999987654     46899999999999998  667888999999999999999998643

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.65  E-value=2.5e-15  Score=111.73  Aligned_cols=104  Identities=22%  Similarity=0.351  Sum_probs=87.2

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCee-EEeccccccc-cccccC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDCYEVH-LDKVLA  161 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~~  161 (224)
                      ....+||+|||||.....+-.....+|+++|++++|-+.+.+.+...         -..++. |++++.++++ +     
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~---------k~~~~~~fvva~ge~l~~l-----  141 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK---------KPLQVERFVVADGENLPQL-----  141 (252)
T ss_pred             CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc---------cCcceEEEEeechhcCccc-----
Confidence            34468999999999888774446779999999999999999998732         233465 9999999887 4     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .+.++|.|++..++.    +.+++.+.|+++.++|+|||++++-
T Consensus       142 ~d~s~DtVV~TlvLC----Sve~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  142 ADGSYDTVVCTLVLC----SVEDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             ccCCeeeEEEEEEEe----ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            579999999999886    5589999999999999999998875

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.64  E-value=5.7e-15  Score=113.99  Aligned_cols=128  Identities=21%  Similarity=0.212  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccc----ccccccCCCCee
Q 027388           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH----HQRRKKFSFPAR  145 (224)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~~v~  145 (224)
                      ...+...+..+...++.+|||+|||.|+.+..++.. +..|+|||+|+.+++.+.+...-....    +.+ ..-..+++
T Consensus        20 ~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~-~~~~~~v~   97 (213)
T TIGR03840        20 NPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFT-RYRAGNIE   97 (213)
T ss_pred             CHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccce-eeecCceE
Confidence            334444444433346689999999999999999854 448999999999999864422100000    000 00134589


Q ss_pred             EEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       146 ~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ++++|+.+++..    ..+.||.|+-..+++++  +.+....++..+.++|+|||++++.
T Consensus        98 ~~~~D~~~~~~~----~~~~fD~i~D~~~~~~l--~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840        98 IFCGDFFALTAA----DLGPVDAVYDRAALIAL--PEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             EEEccCCCCCcc----cCCCcCEEEechhhccC--CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            999999877531    13679999998888888  7788899999999999999975543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.64  E-value=2.4e-15  Score=115.58  Aligned_cols=124  Identities=21%  Similarity=0.289  Sum_probs=93.5

Q ss_pred             CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc-cccc--cccc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVH--LDKV  159 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~  159 (224)
                      ++.+|||+|||+|.++..++.. ....++++|+|+.+++.+++++..        ..+ .++.++++|+ ..++  .   
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~--------~~~-~~v~~~~~d~~~~l~~~~---  107 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE--------EGL-TNLRLLCGDAVEVLLDMF---  107 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH--------cCC-CCEEEEecCHHHHHHHHc---
Confidence            6789999999999999988765 345899999999999999988762        222 4589999998 5554  3   


Q ss_pred             cCCCCCeeEEEEccccccccC----CHHHHHHHHHHHHhhccCCeEEEEEeCChH---HHHHHhhhccc
Q 027388          160 LADDAPFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDAN---VIIKKLREEHF  221 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~----~~~~~~~~l~~~~~~lk~gG~li~~~~~~~---~~~~~~~~~gf  221 (224)
                        +.+.||+|++++...+...    .......+++++.++|+|||.|++.+++..   .+.+.+++.|+
T Consensus       108 --~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~  174 (202)
T PRK00121        108 --PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG  174 (202)
T ss_pred             --CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc
Confidence              4578999998765433210    001247799999999999999999988765   45556666664

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.64  E-value=6.4e-15  Score=111.18  Aligned_cols=123  Identities=17%  Similarity=0.176  Sum_probs=94.9

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++.... +++++|+|+.+++.+++++...          ..++.++++|+.+..      
T Consensus        17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~------   79 (179)
T TIGR00537        17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLN----------NVGLDVVMTDLFKGV------   79 (179)
T ss_pred             hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHc----------CCceEEEEccccccc------
Confidence            35668899999999999998876554 8999999999999999987621          234788888876532      


Q ss_pred             CCCCeeEEEEccccccccCC-----------------HHHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHHHhhhccc
Q 027388          162 DDAPFDICSCQFAMHYSWST-----------------EARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~-----------------~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~~~~~~gf  221 (224)
                       .++||+|+++..+++....                 ......++.++.++|+|||.+++..+   +...+.+.+.+.||
T Consensus        80 -~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf  158 (179)
T TIGR00537        80 -RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGF  158 (179)
T ss_pred             -CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCC
Confidence             3589999998776544110                 11256789999999999999888644   25688899999888


Q ss_pred             c
Q 027388          222 C  222 (224)
Q Consensus       222 ~  222 (224)
                      .
T Consensus       159 ~  159 (179)
T TIGR00537       159 R  159 (179)
T ss_pred             e
Confidence            5

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.63  E-value=6.1e-15  Score=116.70  Aligned_cols=125  Identities=18%  Similarity=0.176  Sum_probs=94.8

Q ss_pred             HHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHH--hccCCcccccccccCCCCeeEEecccccccc
Q 027388           79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT--RYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~--~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      .+..-.+++|||||||+|.++..++..+...|+|+|++....-....  ++.          +....+.++...+++++.
T Consensus       110 ~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~l----------g~~~~~~~lplgvE~Lp~  179 (315)
T PF08003_consen  110 HLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFL----------GQDPPVFELPLGVEDLPN  179 (315)
T ss_pred             hhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHh----------CCCccEEEcCcchhhccc
Confidence            33345899999999999999999988888899999999977655322  222          011122333334455442


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE--------------------------eCChH
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT--------------------------MPDAN  210 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~--------------------------~~~~~  210 (224)
                            .+.||+|+|.+||+|.    .++...|..++..|++||.|++.                          .|...
T Consensus       180 ------~~~FDtVF~MGVLYHr----r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~  249 (315)
T PF08003_consen  180 ------LGAFDTVFSMGVLYHR----RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVA  249 (315)
T ss_pred             ------cCCcCEEEEeeehhcc----CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHH
Confidence                  5789999999999998    78999999999999999999974                          44567


Q ss_pred             HHHHHhhhccccc
Q 027388          211 VIIKKLREEHFCH  223 (224)
Q Consensus       211 ~~~~~~~~~gf~~  223 (224)
                      .+...++..||..
T Consensus       250 ~L~~wl~r~gF~~  262 (315)
T PF08003_consen  250 ALKNWLERAGFKD  262 (315)
T ss_pred             HHHHHHHHcCCce
Confidence            8888898999863

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.62  E-value=1.7e-14  Score=108.81  Aligned_cols=101  Identities=17%  Similarity=0.212  Sum_probs=80.4

Q ss_pred             CCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ++.+|||+|||+|.++..++... ..+++++|+|+.+++.++++...        .++. +++++++|+.++.      .
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~--------~~~~-~i~~i~~d~~~~~------~  106 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE--------LGLN-NVEIVNGRAEDFQ------H  106 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--------hCCC-CeEEEecchhhcc------c
Confidence            58899999999999888876543 45899999999999999888762        2332 5899999998753      2


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .++||+|++.. ++       +...++..+.++|+|||.+++...
T Consensus       107 ~~~fD~I~s~~-~~-------~~~~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138       107 EEQFDVITSRA-LA-------SLNVLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             cCCccEEEehh-hh-------CHHHHHHHHHHhcCCCCEEEEEcC
Confidence            57899999875 33       345678888999999999998755

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.62  E-value=2.5e-14  Score=111.40  Aligned_cols=115  Identities=23%  Similarity=0.289  Sum_probs=89.0

Q ss_pred             HHHHHHHHHh--hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec
Q 027388           72 WIKSVLVQLY--ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (224)
Q Consensus        72 ~~~~~~~~~~--~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (224)
                      ++..++..+.  ..++.+|||+|||+|.++..++.. ..+++|+|+|+.+++.|++++..        .....++.+.++
T Consensus        41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~--------~~~~~~i~~~~~  111 (219)
T TIGR02021        41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQG--------RDVAGNVEFEVN  111 (219)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHh--------cCCCCceEEEEC
Confidence            3333444433  356889999999999999988754 45899999999999999998762        222346889999


Q ss_pred             cccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      |+...+        ++||+|++..+++|+  +..+...++.++.+++++++++.+.
T Consensus       112 d~~~~~--------~~fD~ii~~~~l~~~--~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       112 DLLSLC--------GEFDIVVCMDVLIHY--PASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             ChhhCC--------CCcCEEEEhhHHHhC--CHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            986542        689999999998886  5567888999999999877766653

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.61  E-value=2.2e-14  Score=109.98  Aligned_cols=125  Identities=20%  Similarity=0.263  Sum_probs=95.7

Q ss_pred             HHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           78 VQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        78 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ..+...++.+|||+|||+|.++..++..  ...+++++|+++.+++.+++++..        .++..++.++++|+.+..
T Consensus        34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~--------~g~~~~v~~~~~d~~~~l  105 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK--------FGVLNNIVLIKGEAPEIL  105 (198)
T ss_pred             HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------hCCCCCeEEEEechhhhH
Confidence            3445678899999999999999987654  346899999999999999988762        233356888888886532


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhccc
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEHF  221 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~gf  221 (224)
                      ..    ..+.||+|++....       .++..+++.+.+.|+|||.+++.....   ..+...+++.||
T Consensus       106 ~~----~~~~~D~V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~  163 (198)
T PRK00377        106 FT----INEKFDRIFIGGGS-------EKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF  163 (198)
T ss_pred             hh----cCCCCCEEEECCCc-------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC
Confidence            11    23689999986422       456788999999999999999877665   456667777787

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.61  E-value=3.7e-14  Score=106.04  Aligned_cols=115  Identities=21%  Similarity=0.315  Sum_probs=86.2

Q ss_pred             HHhhcCCCeEEEecCCCchhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           79 QLYARRGDVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      .+...+..+|||+|||+|.++..++..... +++++|+++.+++.+++++..        ..+.. ++++.+|+.+..  
T Consensus        26 ~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~--------n~~~~-v~~~~~d~~~~~--   94 (170)
T PF05175_consen   26 NLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER--------NGLEN-VEVVQSDLFEAL--   94 (170)
T ss_dssp             HHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH--------TTCTT-EEEEESSTTTTC--
T ss_pred             HHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh--------cCccc-cccccccccccc--
Confidence            333347889999999999999998876554 699999999999999999873        33343 889999986533  


Q ss_pred             cccCCCCCeeEEEEccccccccC-CHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          158 KVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~-~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                          ...+||+|+++-.++.-.. ...-...++....+.|+|||.|++....
T Consensus        95 ----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~  142 (170)
T PF05175_consen   95 ----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS  142 (170)
T ss_dssp             ----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             ----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence                3589999999977654311 1135788999999999999998765443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.61  E-value=1.5e-14  Score=116.15  Aligned_cols=101  Identities=20%  Similarity=0.360  Sum_probs=80.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc----CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~----~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ....+|||+|||+|.++..++...    ...++|+|+|+.+++.|+++..              ++.+.++|+.++++  
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~--------------~~~~~~~d~~~lp~--  147 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP--------------QVTFCVASSHRLPF--  147 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC--------------CCeEEEeecccCCC--
Confidence            355789999999999998886542    2368999999999999987754              47889999888776  


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHH
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII  213 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~  213 (224)
                         .+++||+|++..+.           ..+.++.++|+|||+|++.+|+...+.
T Consensus       148 ---~~~sfD~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~  188 (272)
T PRK11088        148 ---ADQSLDAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLF  188 (272)
T ss_pred             ---cCCceeEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchH
Confidence               56899999986542           135788999999999999988765443

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.61  E-value=3.6e-14  Score=111.47  Aligned_cols=108  Identities=20%  Similarity=0.253  Sum_probs=86.3

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||||||+|.++..++.. ...++++|+++.+++.+++++..          ....+.+..+++...+..    
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~~~----  110 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALE----------SGLKIDYRQTTAEELAAE----  110 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHH----------cCCceEEEecCHHHhhhh----
Confidence            456789999999999998888754 45899999999999999887651          122467777877665421    


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ..+.||+|++..+++++    .++..+++.+.+.|+|||.+++..++
T Consensus       111 ~~~~fD~Ii~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHV----PDPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             cCCCccEEEEhhHhhcc----CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence            24789999999999887    56778999999999999999987653

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.61  E-value=3.1e-14  Score=110.29  Aligned_cols=130  Identities=19%  Similarity=0.199  Sum_probs=92.3

Q ss_pred             hhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccc---ccccccCCCCe
Q 027388           68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH---HQRRKKFSFPA  144 (224)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~~v  144 (224)
                      ..+.++...+..+...++.+|||+|||.|+.+..++.. +..|+|||+|+.+++.+.+........   .........++
T Consensus        21 ~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v   99 (218)
T PRK13255         21 EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI   99 (218)
T ss_pred             CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCce
Confidence            34445555554444456789999999999999999854 458999999999999874322100000   00001123568


Q ss_pred             eEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       145 ~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      ++.++|+.++...    ....||+|+-..+++++  +......++..+.++|+|||++++
T Consensus       100 ~~~~~D~~~l~~~----~~~~fd~v~D~~~~~~l--~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        100 TIYCGDFFALTAA----DLADVDAVYDRAALIAL--PEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             EEEECcccCCCcc----cCCCeeEEEehHhHhhC--CHHHHHHHHHHHHHHcCCCCeEEE
Confidence            8999999877532    23589999998888888  778899999999999999996443

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.61  E-value=3.2e-14  Score=108.08  Aligned_cols=122  Identities=15%  Similarity=0.080  Sum_probs=93.6

Q ss_pred             HHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           78 VQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        78 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      ..+...++.+|||+|||+|.++..++... ..+++++|+++.+++.+++++..        ..+ .+++++++|+.. ..
T Consensus        25 ~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~--------~~~-~~i~~~~~d~~~-~~   94 (187)
T PRK08287         25 SKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR--------FGC-GNIDIIPGEAPI-EL   94 (187)
T ss_pred             HhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------hCC-CCeEEEecCchh-hc
Confidence            34445678899999999999999887653 35899999999999999988752        222 247888888632 22


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe---CChHHHHHHhhhcccc
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM---PDANVIIKKLREEHFC  222 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~---~~~~~~~~~~~~~gf~  222 (224)
                            .++||+|++.....+       ...++..+.+.|+|||++++..   .+...+...+.+.||.
T Consensus        95 ------~~~~D~v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~  150 (187)
T PRK08287         95 ------PGKADAIFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS  150 (187)
T ss_pred             ------CcCCCEEEECCCccC-------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence                  357999998765443       3567889999999999998864   3567788888888874

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.60  E-value=2.9e-14  Score=100.76  Aligned_cols=112  Identities=21%  Similarity=0.156  Sum_probs=84.6

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      ++..+...++.+|||+|||+|.++..++... ..+++++|+|+.+++.+++++...        .. .++.++..|+...
T Consensus        11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~-~~~~~~~~~~~~~   81 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF--------GV-SNIVIVEGDAPEA   81 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh--------CC-CceEEEecccccc
Confidence            3444445567899999999999999988653 468999999999999999887621        22 2478888886642


Q ss_pred             ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ...    ..+.||+|++.....       ...++++.+.+.|+|||.|++...
T Consensus        82 ~~~----~~~~~D~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        82 LED----SLPEPDRVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             Chh----hcCCCCEEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence            210    246899999876543       346899999999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.60  E-value=2.8e-14  Score=108.15  Aligned_cols=122  Identities=11%  Similarity=0.122  Sum_probs=91.1

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ...+.||+|+|-|+.+..++...+.+|-.||+.+.+++.|++.+..         .......+++..+.++..     ..
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~---------~~~~v~~~~~~gLQ~f~P-----~~  120 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK---------DNPRVGEFYCVGLQDFTP-----EE  120 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC---------GGCCEEEEEES-GGG---------T
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc---------cCCCcceEEecCHhhccC-----CC
Confidence            4578999999999999988777788999999999999999988762         112224678888777654     45


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE------------------eCChHHHHHHhhhccc
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT------------------MPDANVIIKKLREEHF  221 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~------------------~~~~~~~~~~~~~~gf  221 (224)
                      ..||+|++.+++.|+  +..+..++|+++...|+|+|++++.                  |.....++..|+++|+
T Consensus       121 ~~YDlIW~QW~lghL--TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl  194 (218)
T PF05891_consen  121 GKYDLIWIQWCLGHL--TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGL  194 (218)
T ss_dssp             T-EEEEEEES-GGGS---HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-
T ss_pred             CcEeEEEehHhhccC--CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCC
Confidence            799999999999999  8899999999999999999999984                  2234677888888875

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.59  E-value=2.3e-14  Score=114.49  Aligned_cols=110  Identities=11%  Similarity=0.038  Sum_probs=88.3

Q ss_pred             cCCCeEEEecCCCchhHHHHHh--h-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDK--A-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~--~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      .++++|+|||||.|.++..++.  . ..++++|+|+++.+++.|++.+..       ..++..+++|..+|+.+...   
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-------~~gL~~rV~F~~~Da~~~~~---  191 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-------DPDLSKRMFFHTADVMDVTE---  191 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-------ccCccCCcEEEECchhhccc---
Confidence            3789999999998865444332  2 445899999999999999999851       14566789999999977532   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                        ..+.||+|++. +++++  ...++..++.++.+.|+|||+|++.+.
T Consensus       192 --~l~~FDlVF~~-ALi~~--dk~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        192 --SLKEYDVVFLA-ALVGM--DKEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             --ccCCcCEEEEe-ccccc--ccccHHHHHHHHHHhcCCCcEEEEecc
Confidence              24789999999 88876  446889999999999999999999864

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.59  E-value=3.1e-14  Score=122.99  Aligned_cols=109  Identities=19%  Similarity=0.304  Sum_probs=86.8

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      +...++.+|||||||+|.++..++.. ..+++|+|+++.+++.+++...           ...++.++++|+......  
T Consensus        33 l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~-----------~~~~i~~~~~d~~~~~~~--   98 (475)
T PLN02336         33 LPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING-----------HYKNVKFMCADVTSPDLN--   98 (475)
T ss_pred             cCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc-----------cCCceEEEEecccccccC--
Confidence            33346679999999999999998755 5689999999999998765322           134588999998643211  


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       .+.++||+|++..+++|+  +.++...+++++.++|+|||++++.
T Consensus        99 -~~~~~fD~I~~~~~l~~l--~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336         99 -ISDGSVDLIFSNWLLMYL--SDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             -CCCCCEEEEehhhhHHhC--CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence             146799999999999998  5566889999999999999999884

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.59  E-value=3.4e-14  Score=109.40  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=83.9

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ++..+...++.+|||+|||+|..+..++...  .++++++|+++.+++.|++++..        .++..+++++.+|..+
T Consensus        64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~--------~~~~~~v~~~~~d~~~  135 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER--------LGYWGVVEVYHGDGKR  135 (205)
T ss_pred             HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCCCcEEEEECCccc
Confidence            4444455678899999999999988776542  46899999999999999988762        2334468999999865


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ...     ...+||+|++..++.++    .      .++.+.|+|||+|++...
T Consensus       136 ~~~-----~~~~fD~Ii~~~~~~~~----~------~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        136 GLE-----KHAPFDAIIVTAAASTI----P------SALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             CCc-----cCCCccEEEEccCcchh----h------HHHHHhcCcCcEEEEEEc
Confidence            432     34689999999887765    1      367889999999988643

>PRK14967 putative methyltransferase; Provisional

Probab=99.59  E-value=4.3e-14  Score=110.31  Aligned_cols=133  Identities=21%  Similarity=0.251  Sum_probs=94.9

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +...+......++.+|||+|||+|.++..++.....+++++|+++.+++.+++++...          ..++.++++|+.
T Consensus        25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~----------~~~~~~~~~d~~   94 (223)
T PRK14967         25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA----------GVDVDVRRGDWA   94 (223)
T ss_pred             HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh----------CCeeEEEECchh
Confidence            3333433345667899999999999999887655558999999999999999887521          224778888876


Q ss_pred             ccccccccCCCCCeeEEEEcccccccc-----------------CCHHHHHHHHHHHHhhccCCeEEEEEeC---ChHHH
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSW-----------------STEARARRALANVSALLRPGGTFIGTMP---DANVI  212 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~-----------------~~~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~  212 (224)
                      +. .     ..++||+|+++.......                 +.......++..+.++|++||.+++...   +...+
T Consensus        95 ~~-~-----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~  168 (223)
T PRK14967         95 RA-V-----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERT  168 (223)
T ss_pred             hh-c-----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHH
Confidence            53 2     357899999975322110                 0112356788999999999999998543   44677


Q ss_pred             HHHhhhccc
Q 027388          213 IKKLREEHF  221 (224)
Q Consensus       213 ~~~~~~~gf  221 (224)
                      ...+++.||
T Consensus       169 ~~~l~~~g~  177 (223)
T PRK14967        169 LTRLSEAGL  177 (223)
T ss_pred             HHHHHHCCC
Confidence            778877776

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.59  E-value=2.1e-14  Score=118.31  Aligned_cols=126  Identities=21%  Similarity=0.202  Sum_probs=99.3

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...++.+|||+|||+|.++..++. ....++|+|+++.|++.++.++..        .++.. +.+.++|+.+++.    
T Consensus       179 ~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~--------~g~~~-i~~~~~D~~~l~~----  244 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEH--------YGIED-FFVKRGDATKLPL----  244 (329)
T ss_pred             CCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHH--------hCCCC-CeEEecchhcCCc----
Confidence            456788999999999999887654 456899999999999999988762        23333 7889999988776    


Q ss_pred             CCCCCeeEEEEcccccccc-----CCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhccc
Q 027388          161 ADDAPFDICSCQFAMHYSW-----STEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHF  221 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~-----~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~gf  221 (224)
                       ..+.||+|+++.......     ........++..+.++|+|||++++.+|+...+.+.++++||
T Consensus       245 -~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~~~g~  309 (329)
T TIGR01177       245 -SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAEDAFR  309 (329)
T ss_pred             -ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHhhcCc
Confidence             457899999974322110     011346889999999999999999999988788888899888

This family is found exclusively in the Archaea.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.58  E-value=1.7e-14  Score=101.18  Aligned_cols=113  Identities=26%  Similarity=0.360  Sum_probs=87.0

Q ss_pred             CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      |.+|||+|||+|.++..+++....+++++|+++..++.++.++.        ...+..+++++++|+.+....   ...+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~--------~~~~~~~~~~~~~D~~~~~~~---~~~~   69 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLP--------RNGLDDRVEVIVGDARDLPEP---LPDG   69 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCH--------HCTTTTTEEEEESHHHHHHHT---CTTT
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHH--------HccCCceEEEEECchhhchhh---ccCc
Confidence            46899999999999998886665799999999999999999987        344556799999999876510   1578


Q ss_pred             CeeEEEEccccccccCC----HHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          165 PFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~~----~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      +||+|+++-........    .+....+++.+.++|+|||.+++.+|+
T Consensus        70 ~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   70 KFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA  117 (117)
T ss_dssp             -EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             eeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            99999998765532111    124578999999999999999988764

...

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.58  E-value=8.1e-14  Score=113.31  Aligned_cols=105  Identities=16%  Similarity=0.214  Sum_probs=76.1

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ++.+|||+|||+|.++..++.. ..+++|+|+|+.|++.++++.......    .....++.|...|+..+        .
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~----~~~~~~~~f~~~Dl~~l--------~  210 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAA----LPPEVLPKFEANDLESL--------S  210 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccc----cccccceEEEEcchhhc--------C
Confidence            5779999999999999998865 458999999999999999987521000    00123467888886432        3


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      +.||+|+|..+++|+  +.+....+++.+.+ +.+||.++.
T Consensus       211 ~~fD~Vv~~~vL~H~--p~~~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        211 GKYDTVTCLDVLIHY--PQDKADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             CCcCEEEEcCEEEec--CHHHHHHHHHHHHh-hcCCEEEEE
Confidence            689999999999887  44455667777765 456666554

>PRK06202 hypothetical protein; Provisional

Probab=99.58  E-value=4.4e-14  Score=110.94  Aligned_cols=102  Identities=21%  Similarity=0.214  Sum_probs=78.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh----c-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA----K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~----~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      .++.+|||+|||+|.++..++..    + ..+++|+|+|+.|++.|+++..            ..++.+.+.+...++. 
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~------------~~~~~~~~~~~~~l~~-  125 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR------------RPGVTFRQAVSDELVA-  125 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc------------cCCCeEEEEecccccc-
Confidence            46779999999999988877642    1 2489999999999999988754            2235666666655544 


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                          .+++||+|+++.++||+  +.++...+++++.++++  |.+++.
T Consensus       126 ----~~~~fD~V~~~~~lhh~--~d~~~~~~l~~~~r~~~--~~~~i~  165 (232)
T PRK06202        126 ----EGERFDVVTSNHFLHHL--DDAEVVRLLADSAALAR--RLVLHN  165 (232)
T ss_pred             ----cCCCccEEEECCeeecC--ChHHHHHHHHHHHHhcC--eeEEEe
Confidence                35799999999999998  45557789999999998  444443

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.58  E-value=1.1e-13  Score=108.43  Aligned_cols=102  Identities=25%  Similarity=0.273  Sum_probs=79.5

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++... ..++|+|+|+.+++.|+++...        .+...++.+..+|+..        .
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~--------~~~~~~i~~~~~d~~~--------~  124 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPE--------AGLAGNITFEVGDLES--------L  124 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHh--------cCCccCcEEEEcCchh--------c
Confidence            467899999999999999887654 4799999999999999998762        2223468888888432        2


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                      .++||+|++..+++|+  +.+....+++.+.+.+++++++.
T Consensus       125 ~~~fD~v~~~~~l~~~--~~~~~~~~l~~l~~~~~~~~~i~  163 (230)
T PRK07580        125 LGRFDTVVCLDVLIHY--PQEDAARMLAHLASLTRGSLIFT  163 (230)
T ss_pred             cCCcCEEEEcchhhcC--CHHHHHHHHHHHHhhcCCeEEEE
Confidence            4689999999999886  56678889999988776544443

>TIGR03438 probable methyltransferase

Probab=99.57  E-value=8.5e-14  Score=113.26  Aligned_cols=113  Identities=19%  Similarity=0.163  Sum_probs=83.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-cccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKV  159 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~  159 (224)
                      .++.+|||+|||+|..+..++...  ..+|+++|+|+.|++.+.+++..        .....++.++++|+.+ .++...
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~--------~~p~~~v~~i~gD~~~~~~~~~~  133 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA--------DYPQLEVHGICADFTQPLALPPE  133 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh--------hCCCceEEEEEEcccchhhhhcc
Confidence            466899999999999999888654  46899999999999999888652        1123347788999875 333100


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      . ......++++..+++++  ...+...+|+++.+.|+|||.|++..
T Consensus       134 ~-~~~~~~~~~~gs~~~~~--~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       134 P-AAGRRLGFFPGSTIGNF--TPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             c-ccCCeEEEEecccccCC--CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            0 01133344555567776  67788999999999999999999863

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.56  E-value=3.7e-14  Score=108.35  Aligned_cols=127  Identities=20%  Similarity=0.333  Sum_probs=91.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ....++||||||+|.++..++... ...++|+|++..+++.|++++..        .++. ++.++++|+.++...  ..
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~--------~~l~-ni~~i~~d~~~~~~~--~~   83 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK--------LGLK-NLHVLCGDANELLDK--FF   83 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH--------hCCC-CEEEEccCHHHHHHh--hC
Confidence            356689999999999999988653 45899999999999999988762        2333 699999999765311  01


Q ss_pred             CCCCeeEEEEccccccccCCH----HHHHHHHHHHHhhccCCeEEEEEeCChHH---HHHHhhhcc
Q 027388          162 DDAPFDICSCQFAMHYSWSTE----ARARRALANVSALLRPGGTFIGTMPDANV---IIKKLREEH  220 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~----~~~~~~l~~~~~~lk~gG~li~~~~~~~~---~~~~~~~~g  220 (224)
                      +.+.+|.|++++...|.....    -....+++.+.++|||||.|++.+.+...   +.+.+.+.+
T Consensus        84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~  149 (194)
T TIGR00091        84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEND  149 (194)
T ss_pred             CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCC
Confidence            346899999886544320000    01257899999999999999999887653   344554443

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14968 putative methyltransferase; Provisional

Probab=99.55  E-value=2.4e-13  Score=103.13  Aligned_cols=125  Identities=22%  Similarity=0.266  Sum_probs=93.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCC-eeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++...        .+... +.++++|+.+..      
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~--------~~~~~~~~~~~~d~~~~~------   86 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLN--------NIRNNGVEVIRSDLFEPF------   86 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHc--------CCCCcceEEEeccccccc------
Confidence            57789999999999999988866 679999999999999998887521        22212 778888875532      


Q ss_pred             CCCCeeEEEEccccccc-----------------cCCHHHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHHHhhhccc
Q 027388          162 DDAPFDICSCQFAMHYS-----------------WSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~-----------------~~~~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~~~~~~gf  221 (224)
                      ....||+|+++..+...                 ..+...+..+++++.++|+|||.+++..+   ....+...+.+.||
T Consensus        87 ~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~  166 (188)
T PRK14968         87 RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGF  166 (188)
T ss_pred             cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCC
Confidence            24589999987543220                 01133467789999999999999888755   35678889999887


Q ss_pred             c
Q 027388          222 C  222 (224)
Q Consensus       222 ~  222 (224)
                      .
T Consensus       167 ~  167 (188)
T PRK14968        167 E  167 (188)
T ss_pred             e
Confidence            4

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.55  E-value=1.4e-13  Score=111.24  Aligned_cols=116  Identities=20%  Similarity=0.174  Sum_probs=86.8

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++..+..+++++|+|+.+++.|++++..        ..+...+.+...+....       
T Consensus       157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~--------n~~~~~~~~~~~~~~~~-------  221 (288)
T TIGR00406       157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL--------NQVSDRLQVKLIYLEQP-------  221 (288)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH--------cCCCcceEEEecccccc-------
Confidence            346789999999999999887766667899999999999999998762        23444455565553221       


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC---hHHHHHHhhhc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD---ANVIIKKLREE  219 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---~~~~~~~~~~~  219 (224)
                      ..++||+|+++...       .....++.++.++|+|||.++++...   ...+.+.+.+.
T Consensus       222 ~~~~fDlVvan~~~-------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~  275 (288)
T TIGR00406       222 IEGKADVIVANILA-------EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG  275 (288)
T ss_pred             cCCCceEEEEecCH-------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc
Confidence            24689999997643       34567899999999999999997553   34555666544

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.55  E-value=2.6e-13  Score=105.94  Aligned_cols=106  Identities=22%  Similarity=0.343  Sum_probs=85.6

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      .+.+|||+|||+|.++..++... ..++++|+++.+++.+++++...        .. .++.+.+.|+.+.+..    ..
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~--------~~-~~~~~~~~d~~~~~~~----~~  110 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKD--------PL-LKIEYRCTSVEDLAEK----GA  110 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHc--------CC-CceEEEeCCHHHhhcC----CC
Confidence            47899999999999998887544 47999999999999999876521        11 1478888888766541    23


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      +.||+|++..+++++    .++..++..+.+.|++||.+++..+
T Consensus       111 ~~~D~i~~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       111 KSFDVVTCMEVLEHV----PDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             CCccEEEehhHHHhC----CCHHHHHHHHHHhcCCCcEEEEEec
Confidence            789999999999987    6678899999999999999998764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=9.2e-14  Score=110.74  Aligned_cols=121  Identities=23%  Similarity=0.323  Sum_probs=91.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.++||+|||+|.+++..++.+..+++|+|+++..++.|+.++..+        ++...++....+....+      
T Consensus       160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N--------~v~~~~~~~~~~~~~~~------  225 (300)
T COG2264         160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN--------GVELLVQAKGFLLLEVP------  225 (300)
T ss_pred             hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc--------CCchhhhcccccchhhc------
Confidence            3589999999999999999988888889999999999999999998732        22221222233322222      


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHHHhhhccccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREEHFCH  223 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~~~~~~gf~~  223 (224)
                      ..++||+|+++-..       .-...+...+.+.++|||+++++-.   ..+.+.+.+.++||..
T Consensus       226 ~~~~~DvIVANILA-------~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v  283 (300)
T COG2264         226 ENGPFDVIVANILA-------EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEV  283 (300)
T ss_pred             ccCcccEEEehhhH-------HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeE
Confidence            24699999988632       3457888999999999999999833   3577888888888864

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.54  E-value=2.4e-13  Score=112.47  Aligned_cols=122  Identities=16%  Similarity=0.195  Sum_probs=91.2

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      .....+..+||||||+|.++..++... ...++|+|++..+++.+.+++..        .++ .++.++++|+..+.. .
T Consensus       118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~--------~gL-~NV~~i~~DA~~ll~-~  187 (390)
T PRK14121        118 ISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL--------LNL-KNLLIINYDARLLLE-L  187 (390)
T ss_pred             hcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH--------cCC-CcEEEEECCHHHhhh-h
Confidence            334456799999999999999998764 45899999999999999988763        233 359999999875421 0


Q ss_pred             ccCCCCCeeEEEEccccccccCCHH---HHHHHHHHHHhhccCCeEEEEEeCChHHHHH
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEA---RARRALANVSALLRPGGTFIGTMPDANVIIK  214 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~---~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~  214 (224)
                        .+++++|.|++++..-|. ....   ....++..+.++|+|||.+.+.|-+......
T Consensus       188 --~~~~s~D~I~lnFPdPW~-KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~  243 (390)
T PRK14121        188 --LPSNSVEKIFVHFPVPWD-KKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEF  243 (390)
T ss_pred             --CCCCceeEEEEeCCCCcc-ccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHH
Confidence              157899999987654432 1100   1268999999999999999999887654433

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.53  E-value=2.4e-13  Score=104.83  Aligned_cols=117  Identities=21%  Similarity=0.232  Sum_probs=82.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-cc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DK  158 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~  158 (224)
                      ..++.+|||||||+|.++..+++..  .+.|++||+++ |     ..              ..+++++++|+.+... ..
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~--------------~~~v~~i~~D~~~~~~~~~  108 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DP--------------IVGVDFLQGDFRDELVLKA  108 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cC--------------CCCcEEEecCCCChHHHHH
Confidence            4678899999999999999887653  35899999988 1     01              1248899999987531 00


Q ss_pred             c--cCCCCCeeEEEEccccccccCCHHH-------HHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhh
Q 027388          159 V--LADDAPFDICSCQFAMHYSWSTEAR-------ARRALANVSALLRPGGTFIGTMPDANVIIKKLRE  218 (224)
Q Consensus       159 ~--~~~~~~~D~i~~~~~l~~~~~~~~~-------~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~  218 (224)
                      .  ....+.||+|++..+.++.-....+       ...++..+.++|+|||.|++.+.....+.+.+.+
T Consensus       109 i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~  177 (209)
T PRK11188        109 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLRE  177 (209)
T ss_pred             HHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHH
Confidence            0  0135789999998876653111111       2568999999999999999987765555554444

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.53  E-value=1.2e-13  Score=109.60  Aligned_cols=113  Identities=23%  Similarity=0.314  Sum_probs=84.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++..+..+++++|+|+.+++.|++++..        .++...+.+..+            
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~--------~~~~~~~~~~~~------------  176 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL--------NGVELNVYLPQG------------  176 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH--------cCCCceEEEccC------------
Confidence            457889999999999988877655555799999999999999998762        122111221111            


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~~~~~~gf~  222 (224)
                       ..+||+|+++...       .....++.++.++|+|||+++++..   ....+...+.+.||.
T Consensus       177 -~~~fD~Vvani~~-------~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~  232 (250)
T PRK00517        177 -DLKADVIVANILA-------NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFT  232 (250)
T ss_pred             -CCCcCEEEEcCcH-------HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCE
Confidence             1279999987532       3456789999999999999999843   456777888888874

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.53  E-value=1.3e-13  Score=102.66  Aligned_cols=108  Identities=24%  Similarity=0.303  Sum_probs=88.5

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      +.++.+|||+|||.|.++..+........+|+|+++..+..|.++.                +.++++|+.+.. .  .+
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG----------------v~Viq~Dld~gL-~--~f   71 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG----------------VSVIQGDLDEGL-A--DF   71 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC----------------CCEEECCHHHhH-h--hC
Confidence            4788999999999999999888777778999999999998887763                578999987532 1  12


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHH
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK  215 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~  215 (224)
                      ++++||.|+++.+++++    ..+..+|+++.|+   |...|++.||.......
T Consensus        72 ~d~sFD~VIlsqtLQ~~----~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R  118 (193)
T PF07021_consen   72 PDQSFDYVILSQTLQAV----RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNR  118 (193)
T ss_pred             CCCCccEEehHhHHHhH----hHHHHHHHHHHHh---cCeEEEEecChHHHHHH
Confidence            68999999999999987    7889998888655   66899999997644443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.52  E-value=2.1e-13  Score=111.35  Aligned_cols=108  Identities=15%  Similarity=0.040  Sum_probs=87.6

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ....++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++++.        ..++..+++++.+|+.+.+.  
T Consensus       145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~--------~~gl~~rv~~~~~d~~~~~~--  213 (306)
T TIGR02716       145 AKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA--------EKGVADRMRGIAVDIYKESY--  213 (306)
T ss_pred             cCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHH--------hCCccceEEEEecCccCCCC--
Confidence            344567899999999999999988764 358999998 689999988876        33455679999999876543  


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                           ..+|+|++..++|++  +.+....+++++++.|+|||+|++.
T Consensus       214 -----~~~D~v~~~~~lh~~--~~~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       214 -----PEADAVLFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             -----CCCCEEEeEhhhhcC--ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence                 246999999999876  5556788999999999999999875

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.52  E-value=6.9e-13  Score=106.94  Aligned_cols=126  Identities=17%  Similarity=0.194  Sum_probs=93.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++.        ..++..++.++++|+.+. .     
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~--------~~~~~~~i~~~~~D~~~~-~-----  185 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIE--------RHGLEDRVTLIQSDLFAA-L-----  185 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEECchhhc-c-----
Confidence            345789999999999999988653 4589999999999999999976        234445689999997542 2     


Q ss_pred             CCCCeeEEEEcccc------ccc-----c----------CCHHHHHHHHHHHHhhccCCeEEEEEeCCh-HHHHHHhhhc
Q 027388          162 DDAPFDICSCQFAM------HYS-----W----------STEARARRALANVSALLRPGGTFIGTMPDA-NVIIKKLREE  219 (224)
Q Consensus       162 ~~~~~D~i~~~~~l------~~~-----~----------~~~~~~~~~l~~~~~~lk~gG~li~~~~~~-~~~~~~~~~~  219 (224)
                      +...||+|+++-..      ..+     .          +.......++..+.+.|+|||++++.+.+. ..+...+.+.
T Consensus       186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~~~~~~~  265 (284)
T TIGR03533       186 PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALEEAYPDV  265 (284)
T ss_pred             CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhC
Confidence            24579999987311      000     0          011235678999999999999999988754 4667777777


Q ss_pred             ccc
Q 027388          220 HFC  222 (224)
Q Consensus       220 gf~  222 (224)
                      ||.
T Consensus       266 ~~~  268 (284)
T TIGR03533       266 PFT  268 (284)
T ss_pred             CCc
Confidence            764

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK04266 fibrillarin; Provisional

Probab=99.52  E-value=4.8e-13  Score=104.14  Aligned_cols=125  Identities=18%  Similarity=0.160  Sum_probs=88.4

Q ss_pred             HHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           79 QLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      .+.+.++.+|||+|||+|.++..++... .+.|+++|+++.|++.+.+.+..           ..++.++.+|+......
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----------~~nv~~i~~D~~~~~~~  135 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----------RKNIIPILADARKPERY  135 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----------cCCcEEEECCCCCcchh
Confidence            3456788999999999999999887643 46899999999999987766541           13588899998642100


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC------------hHHHHHHhhhcccc
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD------------ANVIIKKLREEHFC  222 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~------------~~~~~~~~~~~gf~  222 (224)
                      ..  ....||+|++....      ......++.++.+.|||||.++++.+.            .....+.++++||.
T Consensus       136 ~~--l~~~~D~i~~d~~~------p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~  204 (226)
T PRK04266        136 AH--VVEKVDVIYQDVAQ------PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFE  204 (226)
T ss_pred             hh--ccccCCEEEECCCC------hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCe
Confidence            00  13569999864321      123355789999999999999995321            12355788888885

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.52  E-value=2.5e-13  Score=105.06  Aligned_cols=108  Identities=19%  Similarity=0.149  Sum_probs=82.4

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ++..+...++.+|||||||+|.++..++...  .++++++|+++.+++.+++++...        +. .++.++++|...
T Consensus        68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~--------g~-~~v~~~~gd~~~  138 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL--------GY-DNVEVIVGDGTL  138 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--------CC-CCeEEEECCccc
Confidence            4445556788999999999999998776542  368999999999999999998632        22 358999999865


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ...     ...+||+|++..+...+          ...+.+.|+|||+|++...
T Consensus       139 ~~~-----~~~~fD~I~~~~~~~~~----------~~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        139 GYE-----ENAPYDRIYVTAAGPDI----------PKPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             CCC-----cCCCcCEEEECCCcccc----------hHHHHHhhCCCcEEEEEEc
Confidence            432     35789999998766543          2356778999999988643

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.51  E-value=4e-13  Score=102.43  Aligned_cols=124  Identities=19%  Similarity=0.303  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHHhhc---CCCeEEEecCCCchhHHHHHhhcC---CeEEEEeCChhHHHHHHHhccCCcccccccccCCC
Q 027388           69 LNNWIKSVLVQLYAR---RGDVVLDLACGKGGDLIKWDKAKI---GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF  142 (224)
Q Consensus        69 ~~~~~~~~~~~~~~~---~~~~iLDiGcG~G~~~~~l~~~~~---~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  142 (224)
                      .++|+.+-...+...   ...+|||||||.|.....+++...   -.++++|.|+.+++..+++....          ..
T Consensus        53 dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----------e~  122 (264)
T KOG2361|consen   53 DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----------ES  122 (264)
T ss_pred             hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----------hh
Confidence            445555444433221   223799999999999999887533   37999999999999999886521          23


Q ss_pred             CeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       143 ~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ++...+.|+....+.... ..+++|+|++.++|.-+  +......++.++.++|||||.|++.
T Consensus       123 ~~~afv~Dlt~~~~~~~~-~~~svD~it~IFvLSAi--~pek~~~a~~nl~~llKPGG~llfr  182 (264)
T KOG2361|consen  123 RVEAFVWDLTSPSLKEPP-EEGSVDIITLIFVLSAI--HPEKMQSVIKNLRTLLKPGGSLLFR  182 (264)
T ss_pred             hhcccceeccchhccCCC-CcCccceEEEEEEEecc--ChHHHHHHHHHHHHHhCCCcEEEEe
Confidence            455666676544422222 57999999999999888  7788999999999999999999985

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.51  E-value=2.1e-13  Score=109.64  Aligned_cols=116  Identities=22%  Similarity=0.303  Sum_probs=87.2

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++++|||+|||+|.+++..++.+..+++++|+++.+++.|+.++..        +++..++.+.  ...+  .     
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~--------N~~~~~~~v~--~~~~--~-----  221 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAEL--------NGVEDRIEVS--LSED--L-----  221 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHH--------TT-TTCEEES--CTSC--T-----
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHH--------cCCCeeEEEE--Eecc--c-----
Confidence            467889999999999999998877888999999999999999999873        3445444432  1111  1     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE---eCChHHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT---MPDANVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~---~~~~~~~~~~~~~~gf~  222 (224)
                      ...+||+|+++-..       .-+..++..+.++|+|||+|+++   ....+.+.+.+.+ ||.
T Consensus       222 ~~~~~dlvvANI~~-------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~  277 (295)
T PF06325_consen  222 VEGKFDLVVANILA-------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFE  277 (295)
T ss_dssp             CCS-EEEEEEES-H-------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEE
T ss_pred             ccccCCEEEECCCH-------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCE
Confidence            24899999988654       45677888899999999999987   3355778888866 764

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.51  E-value=4.8e-13  Score=111.07  Aligned_cols=113  Identities=13%  Similarity=0.141  Sum_probs=84.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+.+|||+|||+|.++..++... ..+++++|.|+.+++.+++++..+..      ....+++++..|+....      
T Consensus       227 ~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~------~~~~~v~~~~~D~l~~~------  294 (378)
T PRK15001        227 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP------EALDRCEFMINNALSGV------  294 (378)
T ss_pred             ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc------ccCceEEEEEccccccC------
Confidence            335699999999999999887654 46899999999999999998752210      00125788888875422      


Q ss_pred             CCCCeeEEEEcccccccc-CCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          162 DDAPFDICSCQFAMHYSW-STEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~-~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ...+||+|+|+-.+|... .+.....+++..+.+.|+|||.|++..-
T Consensus       295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            246899999987765431 1334567899999999999999998753

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.51  E-value=4.6e-13  Score=100.71  Aligned_cols=130  Identities=18%  Similarity=0.239  Sum_probs=92.4

Q ss_pred             HHHHHHHHhhcC--CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           73 IKSVLVQLYARR--GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        73 ~~~~~~~~~~~~--~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      ..+.++.+.++.  +.-|||||||+|.-+..+. .....++|+|+|+.|++.|.++-.              .-.++.+|
T Consensus        37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~-~~Gh~wiGvDiSpsML~~a~~~e~--------------egdlil~D  101 (270)
T KOG1541|consen   37 AERALELLALPGPKSGLILDIGCGSGLSGSVLS-DSGHQWIGVDISPSMLEQAVEREL--------------EGDLILCD  101 (270)
T ss_pred             HHHHHHHhhCCCCCCcEEEEeccCCCcchheec-cCCceEEeecCCHHHHHHHHHhhh--------------hcCeeeee
Confidence            333444444444  6789999999996655553 444678899999999999987432              13578888


Q ss_pred             cc-ccccccccCCCCCeeEEEEcccccccc-------CCHHHHHHHHHHHHhhccCCeEEEEEeCCh-----HHHHHHhh
Q 027388          151 CY-EVHLDKVLADDAPFDICSCQFAMHYSW-------STEARARRALANVSALLRPGGTFIGTMPDA-----NVIIKKLR  217 (224)
Q Consensus       151 ~~-~~~~~~~~~~~~~~D~i~~~~~l~~~~-------~~~~~~~~~l~~~~~~lk~gG~li~~~~~~-----~~~~~~~~  217 (224)
                      +. .+++     +++.||.+|+..+++|+.       .+..-+..|+..++.+|++|+..++.....     +.|...-.
T Consensus       102 MG~Glpf-----rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~  176 (270)
T KOG1541|consen  102 MGEGLPF-----RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAM  176 (270)
T ss_pred             cCCCCCC-----CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHH
Confidence            75 3444     789999999999888763       133446778999999999999998875532     33444445


Q ss_pred             hcccc
Q 027388          218 EEHFC  222 (224)
Q Consensus       218 ~~gf~  222 (224)
                      .+||.
T Consensus       177 ~aGF~  181 (270)
T KOG1541|consen  177 KAGFG  181 (270)
T ss_pred             hhccC
Confidence            66764

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.50  E-value=3.3e-13  Score=104.74  Aligned_cols=109  Identities=19%  Similarity=0.138  Sum_probs=83.1

Q ss_pred             HHHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        75 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      .++..+...++.+|||||||+|.++..++...  ...++++|+++.+++.|++++...        ++ .+++++++|+.
T Consensus        68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~--------g~-~~v~~~~~d~~  138 (215)
T TIGR00080        68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL--------GL-DNVIVIVGDGT  138 (215)
T ss_pred             HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC--------CC-CCeEEEECCcc
Confidence            34444556788999999999999998887653  246999999999999999998732        22 35899999986


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      +...     ...+||+|++.....++          ...+.+.|+|||+|++...
T Consensus       139 ~~~~-----~~~~fD~Ii~~~~~~~~----------~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       139 QGWE-----PLAPYDRIYVTAAGPKI----------PEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             cCCc-----ccCCCCEEEEcCCcccc----------cHHHHHhcCcCcEEEEEEc
Confidence            5432     34689999988765543          2457788999999998654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.50  E-value=2.8e-13  Score=105.32  Aligned_cols=130  Identities=20%  Similarity=0.217  Sum_probs=101.6

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ....++|||+|||+|..++.++.. ...++++||+.+.+.+.|+++++        .+.+..++++++.|+.++....  
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~--------ln~l~~ri~v~~~Di~~~~~~~--  111 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVA--------LNPLEERIQVIEADIKEFLKAL--  111 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHH--------hCcchhceeEehhhHHHhhhcc--
Confidence            345889999999999999998876 44799999999999999999988        3567788999999998875421  


Q ss_pred             CCCCCeeEEEEccccccccC--------------CHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhhcccc
Q 027388          161 ADDAPFDICSCQFAMHYSWS--------------TEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREEHFC  222 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~--------------~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~~gf~  222 (224)
                       ...+||+|+|+-.++-.-.              ..-..+++++...++||+||.+.+..+.  ...+.+.+++.+|.
T Consensus       112 -~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~  188 (248)
T COG4123         112 -VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLE  188 (248)
T ss_pred             -cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCC
Confidence             2357999999864332100              0113678999999999999999988774  35678888877664

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.50  E-value=1.4e-12  Score=103.44  Aligned_cols=125  Identities=19%  Similarity=0.225  Sum_probs=93.2

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+.+|||+|||+|.++..++.. ....++|+|+++.+++.+++++..        .++. ++.++++|+.+. .     
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~--------~~~~-~~~~~~~d~~~~-~-----  150 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR--------LGLD-NVTFLQSDWFEP-L-----  150 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCC-eEEEEECchhcc-C-----
Confidence            34568999999999999998865 345899999999999999998762        2222 488999998652 2     


Q ss_pred             CCCCeeEEEEcccccc------ccC----------------CHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhh
Q 027388          162 DDAPFDICSCQFAMHY------SWS----------------TEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLR  217 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~------~~~----------------~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~  217 (224)
                      +.++||+|+++.....      +..                .......++..+.++|+|||.+++....  ...+.+.+.
T Consensus       151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~  230 (251)
T TIGR03534       151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFE  230 (251)
T ss_pred             cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHH
Confidence            3578999998643221      100                0122357889999999999999998654  357888899


Q ss_pred             hcccc
Q 027388          218 EEHFC  222 (224)
Q Consensus       218 ~~gf~  222 (224)
                      +.||.
T Consensus       231 ~~gf~  235 (251)
T TIGR03534       231 AAGFA  235 (251)
T ss_pred             hCCCC
Confidence            88885

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.49  E-value=1.6e-12  Score=105.88  Aligned_cols=123  Identities=17%  Similarity=0.174  Sum_probs=90.5

Q ss_pred             CeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      .+|||+|||+|.++..++... ..+++++|+|+.+++.|++++..        .++..++.++++|+.+. .     +..
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~--------~~l~~~i~~~~~D~~~~-l-----~~~  200 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIER--------HGLEDRVTLIESDLFAA-L-----PGR  200 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCCCCcEEEEECchhhh-C-----CCC
Confidence            689999999999999887653 46899999999999999999862        34445689999997542 1     245


Q ss_pred             CeeEEEEcccc-------------ccc--------cCCHHHHHHHHHHHHhhccCCeEEEEEeCCh-HHHHHHhhhcccc
Q 027388          165 PFDICSCQFAM-------------HYS--------WSTEARARRALANVSALLRPGGTFIGTMPDA-NVIIKKLREEHFC  222 (224)
Q Consensus       165 ~~D~i~~~~~l-------------~~~--------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~-~~~~~~~~~~gf~  222 (224)
                      +||+|+++-..             .|-        .++......+++.+.+.|+|||.+++.+.+. ..+...+.+.+|.
T Consensus       201 ~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~~~~~~~~~~~~~  280 (307)
T PRK11805        201 RYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRVHLEEAYPDVPFT  280 (307)
T ss_pred             CccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHhhCCCE
Confidence            79999987311             000        0012345688999999999999999987653 4566666666653

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.48  E-value=2e-12  Score=95.70  Aligned_cols=124  Identities=21%  Similarity=0.216  Sum_probs=99.3

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      .+..+.+.++..++|||||||..+.+++.. ..++++++|-++.+++..++++..+        + -.|+.++.+++-+.
T Consensus        26 ~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f--------g-~~n~~vv~g~Ap~~   96 (187)
T COG2242          26 TLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF--------G-VDNLEVVEGDAPEA   96 (187)
T ss_pred             HHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh--------C-CCcEEEEeccchHh
Confidence            455667889999999999999999999843 5579999999999999999998733        3 44699999998665


Q ss_pred             ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhccc
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEHF  221 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~gf  221 (224)
                      ..     ....+|.|+..+. .       ....++..+...|+|||.++++.-..   ..+.+.+++.||
T Consensus        97 L~-----~~~~~daiFIGGg-~-------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~  153 (187)
T COG2242          97 LP-----DLPSPDAIFIGGG-G-------NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG  153 (187)
T ss_pred             hc-----CCCCCCEEEECCC-C-------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence            32     2338999999886 3       35678999999999999999986654   456667777776

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.47  E-value=1.1e-12  Score=101.47  Aligned_cols=134  Identities=11%  Similarity=0.074  Sum_probs=97.1

Q ss_pred             hhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccc---ccccccCCCC
Q 027388           67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH---HQRRKKFSFP  143 (224)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~~  143 (224)
                      ...+.++...+..+...++.+||..|||.|..+..|+..+. +|+|+|+|+..++.+.+........   +.....-...
T Consensus        26 ~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~  104 (226)
T PRK13256         26 ESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD  104 (226)
T ss_pred             CCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCc
Confidence            34455555555555445678999999999999999986555 7999999999999987743210000   0000011346


Q ss_pred             eeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       144 v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ++++++|+.+++....  ..+.||+|+-..++..+  +.+...++.+.+.++|+|||.+++.
T Consensus       105 i~~~~gD~f~l~~~~~--~~~~fD~VyDra~~~Al--pp~~R~~Y~~~l~~lL~pgg~llll  162 (226)
T PRK13256        105 IEIYVADIFNLPKIAN--NLPVFDIWYDRGAYIAL--PNDLRTNYAKMMLEVCSNNTQILLL  162 (226)
T ss_pred             eEEEEccCcCCCcccc--ccCCcCeeeeehhHhcC--CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            8999999988753110  23689999999999888  7788999999999999999987765

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.47  E-value=1.3e-12  Score=107.69  Aligned_cols=108  Identities=15%  Similarity=0.202  Sum_probs=83.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ....+|||+|||+|.++..+++.. ..+++++|+|+.+++.+++++..+        .+  ...++..|+...       
T Consensus       195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n--------~l--~~~~~~~D~~~~-------  257 (342)
T PRK09489        195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN--------GL--EGEVFASNVFSD-------  257 (342)
T ss_pred             cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CC--CCEEEEcccccc-------
Confidence            345689999999999999887654 358999999999999999987732        22  245666776432       


Q ss_pred             CCCCeeEEEEccccccccC-CHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          162 DDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~-~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ..+.||+|+++..+|+... .......+++.+.+.|+|||.|++...
T Consensus       258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            2468999999988876322 235678999999999999999988643

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.46  E-value=2e-13  Score=104.08  Aligned_cols=98  Identities=13%  Similarity=0.182  Sum_probs=72.1

Q ss_pred             CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc--ccccccccccCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD--CYEVHLDKVLADD  163 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~~~  163 (224)
                      +.++|+|||+|..+..++ ..+.+|+++|+|+.|++.|++..+               +.+.+..  +.+.+..++...+
T Consensus        35 ~~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL~~a~k~~~---------------~~y~~t~~~ms~~~~v~L~g~e   98 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIA-EHYKEVIATDVSEAMLKVAKKHPP---------------VTYCHTPSTMSSDEMVDLLGGE   98 (261)
T ss_pred             ceEEEeccCCCcchHHHH-HhhhhheeecCCHHHHHHhhcCCC---------------cccccCCccccccccccccCCC
Confidence            389999999995555554 567899999999999999988765               2222221  1222222222247


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCe-EEEE
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIG  204 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG-~li~  204 (224)
                      +++|+|+|..++||+     +...+.+.+.++||+.| .+.+
T Consensus        99 ~SVDlI~~Aqa~HWF-----dle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   99 ESVDLITAAQAVHWF-----DLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             cceeeehhhhhHHhh-----chHHHHHHHHHHcCCCCCEEEE
Confidence            899999999999997     67899999999999876 4443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.46  E-value=3e-12  Score=103.40  Aligned_cols=122  Identities=15%  Similarity=0.210  Sum_probs=89.6

Q ss_pred             CeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      .+|||+|||+|.++..++... ..+++++|+|+.+++.|++++..        .++..++.++++|+.+. .     ...
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~--------~~~~~~v~~~~~d~~~~-~-----~~~  181 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK--------NQLEHRVEFIQSNLFEP-L-----AGQ  181 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEECchhcc-C-----cCC
Confidence            689999999999999988654 36899999999999999998762        23444589999998642 2     234


Q ss_pred             CeeEEEEcc-------------ccccc--------cCCHHHHHHHHHHHHhhccCCeEEEEEeCCh--HHHHHHhh-hcc
Q 027388          165 PFDICSCQF-------------AMHYS--------WSTEARARRALANVSALLRPGGTFIGTMPDA--NVIIKKLR-EEH  220 (224)
Q Consensus       165 ~~D~i~~~~-------------~l~~~--------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~--~~~~~~~~-~~g  220 (224)
                      +||+|+++-             +..|-        .++......++..+.+.|+|||++++.+.+.  ..+...+. +.|
T Consensus       182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~  261 (284)
T TIGR00536       182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFT  261 (284)
T ss_pred             CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCC
Confidence            899999862             11111        0112356788999999999999999988754  45555666 346


Q ss_pred             c
Q 027388          221 F  221 (224)
Q Consensus       221 f  221 (224)
                      |
T Consensus       262 ~  262 (284)
T TIGR00536       262 W  262 (284)
T ss_pred             C
Confidence            6

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.46  E-value=1.3e-12  Score=99.88  Aligned_cols=99  Identities=26%  Similarity=0.373  Sum_probs=76.3

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-cc-ccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VH-LDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~  160 (224)
                      .++.+|||+|||+|.++..++......++|+|+|+.+++.+++.                ++.++++|+.+ ++ .    
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----------------~~~~~~~d~~~~l~~~----   71 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----------------GVNVIQGDLDEGLEAF----   71 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----------------CCeEEEEEhhhccccc----
Confidence            46789999999999999887655555789999999999988642                25778888764 22 2    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                       ..++||+|+++.+++|+    .++..+++++.+.++   .++++.|+.
T Consensus        72 -~~~sfD~Vi~~~~l~~~----~d~~~~l~e~~r~~~---~~ii~~p~~  112 (194)
T TIGR02081        72 -PDKSFDYVILSQTLQAT----RNPEEILDEMLRVGR---HAIVSFPNF  112 (194)
T ss_pred             -CCCCcCEEEEhhHhHcC----cCHHHHHHHHHHhCC---eEEEEcCCh
Confidence             45789999999999998    667888888877655   455555553

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.45  E-value=2.5e-12  Score=98.43  Aligned_cols=115  Identities=18%  Similarity=0.187  Sum_probs=83.8

Q ss_pred             HHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           78 VQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        78 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      ..+...++.+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++..        .+. .+++++.+|+.+...
T Consensus        34 ~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~--------~~~-~~v~~~~~d~~~~~~  104 (196)
T PRK07402         34 SQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR--------FGV-KNVEVIEGSAPECLA  104 (196)
T ss_pred             HhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCC-CCeEEEECchHHHHh
Confidence            3344567889999999999999888754 346899999999999999998762        222 358899998754211


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHH
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII  213 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~  213 (224)
                       .   ....+|.++....        .....++..+.+.|+|||.+++..++...+.
T Consensus       105 -~---~~~~~d~v~~~~~--------~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~  149 (196)
T PRK07402        105 -Q---LAPAPDRVCIEGG--------RPIKEILQAVWQYLKPGGRLVATASSLEGLY  149 (196)
T ss_pred             -h---CCCCCCEEEEECC--------cCHHHHHHHHHHhcCCCeEEEEEeecHHHHH
Confidence             0   1234566654321        2457889999999999999999988876543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.44  E-value=8.1e-14  Score=105.34  Aligned_cols=142  Identities=17%  Similarity=0.215  Sum_probs=101.1

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv  113 (224)
                      .+....|++.++.|+...-...   .       ...-..+..++......+-+++||+|||||-.+..+. .-..+++||
T Consensus        85 aYVe~LFD~~Ae~Fd~~LVdkL---~-------Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR-~~a~~ltGv  153 (287)
T COG4976          85 AYVETLFDQYAERFDHILVDKL---G-------YSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALR-DMADRLTGV  153 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh---c-------CccHHHHHHHHHhccCCccceeeecccCcCcccHhHH-HHHhhccCC
Confidence            4456678888888875443221   0       1112234555555555567899999999998877764 445589999


Q ss_pred             eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHH
Q 027388          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS  193 (224)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~  193 (224)
                      |+|++|++.|..+--              .-++.++++..+....   ..+.||+|++..|+.|+    -++..++.-..
T Consensus       154 DiS~nMl~kA~eKg~--------------YD~L~~Aea~~Fl~~~---~~er~DLi~AaDVl~Yl----G~Le~~~~~aa  212 (287)
T COG4976         154 DISENMLAKAHEKGL--------------YDTLYVAEAVLFLEDL---TQERFDLIVAADVLPYL----GALEGLFAGAA  212 (287)
T ss_pred             chhHHHHHHHHhccc--------------hHHHHHHHHHHHhhhc---cCCcccchhhhhHHHhh----cchhhHHHHHH
Confidence            999999999977632              2345566654433100   46899999999999998    67899999999


Q ss_pred             hhccCCeEEEEEeC
Q 027388          194 ALLRPGGTFIGTMP  207 (224)
Q Consensus       194 ~~lk~gG~li~~~~  207 (224)
                      ..|+|||.|.++.-
T Consensus       213 ~~L~~gGlfaFSvE  226 (287)
T COG4976         213 GLLAPGGLFAFSVE  226 (287)
T ss_pred             HhcCCCceEEEEec
Confidence            99999999999843

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.44  E-value=4.4e-12  Score=105.69  Aligned_cols=126  Identities=15%  Similarity=0.167  Sum_probs=92.3

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||+|||+|.++..++.. ...+++++|+|+.+++.|++++..          ...++.++++|+.+....    
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~----------~g~rV~fi~gDl~e~~l~----  315 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD----------LGARVEFAHGSWFDTDMP----  315 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----------cCCcEEEEEcchhccccc----
Confidence            35579999999999999988754 456899999999999999999762          133689999998654321    


Q ss_pred             CCCCeeEEEEcccccc-----c----------------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhh
Q 027388          162 DDAPFDICSCQFAMHY-----S----------------WSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLRE  218 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~-----~----------------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~  218 (224)
                      ..++||+|+++-...-     .                .++......++..+.+.|+|||.+++....  ...+.+.+.+
T Consensus       316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~  395 (423)
T PRK14966        316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE  395 (423)
T ss_pred             cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHH
Confidence            2357999999753210     0                011123457778888999999999987654  4678888888


Q ss_pred             cccc
Q 027388          219 EHFC  222 (224)
Q Consensus       219 ~gf~  222 (224)
                      .||.
T Consensus       396 ~Gf~  399 (423)
T PRK14966        396 NGFS  399 (423)
T ss_pred             CCCc
Confidence            8873

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=2.3e-12  Score=99.54  Aligned_cols=124  Identities=23%  Similarity=0.270  Sum_probs=102.2

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      +....+.++.+|||.|.|+|.++..++..  ..++++.+|+.+++.+.|++++.        ..++.+++.+..+|+.+.
T Consensus        87 ~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~--------~~~l~d~v~~~~~Dv~~~  158 (256)
T COG2519          87 VARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS--------EFGLGDRVTLKLGDVREG  158 (256)
T ss_pred             HHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHH--------HhccccceEEEecccccc
Confidence            33456789999999999999999998853  45799999999999999999998        346666789999998876


Q ss_pred             ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH---HHHHHhhhccccc
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN---VIIKKLREEHFCH  223 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~---~~~~~~~~~gf~~  223 (224)
                      ..      ...||.|+...         +++-.++..+.+.|+|||.+++..|..+   ...+.+++.||++
T Consensus       159 ~~------~~~vDav~LDm---------p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~  215 (256)
T COG2519         159 ID------EEDVDAVFLDL---------PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVD  215 (256)
T ss_pred             cc------ccccCEEEEcC---------CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccc
Confidence            64      45999998753         5667899999999999999999999875   4555777778865

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.44  E-value=7e-12  Score=100.87  Aligned_cols=127  Identities=18%  Similarity=0.224  Sum_probs=93.5

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+|||+|||+|.++..++... ...++++|+|+.+++.+++++.         .....++.++++|+....    
T Consensus       105 ~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~---------~~~~~~i~~~~~d~~~~~----  171 (275)
T PRK09328        105 LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK---------HGLGARVEFLQGDWFEPL----  171 (275)
T ss_pred             cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---------hCCCCcEEEEEccccCcC----
Confidence            34567899999999999999887653 4689999999999999999865         122346899999974321    


Q ss_pred             cCCCCCeeEEEEcccccc------c----------------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHH
Q 027388          160 LADDAPFDICSCQFAMHY------S----------------WSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKK  215 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~------~----------------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~  215 (224)
                        ..++||+|+++....-      +                .+.......++..+.++|+|||++++....  ...+...
T Consensus       172 --~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~  249 (275)
T PRK09328        172 --PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRAL  249 (275)
T ss_pred             --CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHH
Confidence              2468999998642110      0                011234577888999999999999998653  3567778


Q ss_pred             hhhcccc
Q 027388          216 LREEHFC  222 (224)
Q Consensus       216 ~~~~gf~  222 (224)
                      +.+.||.
T Consensus       250 l~~~gf~  256 (275)
T PRK09328        250 LAAAGFA  256 (275)
T ss_pred             HHhCCCc
Confidence            8888874

>PTZ00146 fibrillarin; Provisional

Probab=99.43  E-value=2.9e-12  Score=102.17  Aligned_cols=124  Identities=19%  Similarity=0.194  Sum_probs=87.0

Q ss_pred             HHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc-
Q 027388           79 QLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-  155 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-  155 (224)
                      .+.+.++.+|||+|||+|.++..++..-  ...|++||+|+.+.+........           ..++.++.+|+..-. 
T Consensus       127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----------r~NI~~I~~Da~~p~~  195 (293)
T PTZ00146        127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----------RPNIVPIIEDARYPQK  195 (293)
T ss_pred             eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----------cCCCEEEECCccChhh
Confidence            3456788999999999999999988653  46899999998766544444321           135888899976321 


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE--------eCChHHH----HHHhhhcccc
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT--------MPDANVI----IKKLREEHFC  222 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~--------~~~~~~~----~~~~~~~gf~  222 (224)
                      ...   ..+.||+|++..+.      .+....++.++.+.|||||.|++.        ++..+.+    .+.|+++||.
T Consensus       196 y~~---~~~~vDvV~~Dva~------pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~  265 (293)
T PTZ00146        196 YRM---LVPMVDVIFADVAQ------PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLK  265 (293)
T ss_pred             hhc---ccCCCCEEEEeCCC------cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCc
Confidence            110   23579999987742      134556667899999999999985        3344444    4678888885

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.42  E-value=1.4e-12  Score=98.03  Aligned_cols=147  Identities=16%  Similarity=0.242  Sum_probs=90.3

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv  113 (224)
                      ++..+.|.+-.+.|+........+....|.-.+..+..|+.      ...+...|.|+|||.+.++..+  ....+|+..
T Consensus        28 ~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~------~~~~~~viaD~GCGdA~la~~~--~~~~~V~Sf   99 (219)
T PF05148_consen   28 EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK------KRPKSLVIADFGCGDAKLAKAV--PNKHKVHSF   99 (219)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC------TS-TTS-EEEES-TT-HHHHH----S---EEEE
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH------hcCCCEEEEECCCchHHHHHhc--ccCceEEEe
Confidence            44455666666666555555555555555544444433333      2244578999999999888654  344479999


Q ss_pred             eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHH
Q 027388          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS  193 (224)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~  193 (224)
                      |+-+.                        +-.+..||+.++|+     +++.+|+++++.+|.-     .+...++.+..
T Consensus       100 DLva~------------------------n~~Vtacdia~vPL-----~~~svDv~VfcLSLMG-----Tn~~~fi~EA~  145 (219)
T PF05148_consen  100 DLVAP------------------------NPRVTACDIANVPL-----EDESVDVAVFCLSLMG-----TNWPDFIREAN  145 (219)
T ss_dssp             ESS-S------------------------STTEEES-TTS-S-------TT-EEEEEEES---S-----S-HHHHHHHHH
T ss_pred             eccCC------------------------CCCEEEecCccCcC-----CCCceeEEEEEhhhhC-----CCcHHHHHHHH
Confidence            98651                        13577899999998     6899999999988764     67899999999


Q ss_pred             hhccCCeEEEEE-----eCChHHHHHHhhhcccc
Q 027388          194 ALLRPGGTFIGT-----MPDANVIIKKLREEHFC  222 (224)
Q Consensus       194 ~~lk~gG~li~~-----~~~~~~~~~~~~~~gf~  222 (224)
                      |+||+||.|.|.     ..+.....+.+...||.
T Consensus       146 RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~  179 (219)
T PF05148_consen  146 RVLKPGGILKIAEVKSRFENVKQFIKALKKLGFK  179 (219)
T ss_dssp             HHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEE
T ss_pred             heeccCcEEEEEEecccCcCHHHHHHHHHHCCCe
Confidence            999999999986     44677888888888884

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.41  E-value=5.1e-12  Score=85.57  Aligned_cols=103  Identities=26%  Similarity=0.383  Sum_probs=82.6

Q ss_pred             eEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCe
Q 027388           87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF  166 (224)
Q Consensus        87 ~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  166 (224)
                      +|+|+|||.|..+..++.....+++++|+++..++.+++...         .....++.++.+|+.+....    ...+|
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~----~~~~~   67 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAA---------ALLADNVEVLKGDAEELPPE----ADESF   67 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHh---------cccccceEEEEcChhhhccc----cCCce
Confidence            589999999999988876456799999999999999985332         12234588889988766431    35789


Q ss_pred             eEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       167 D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      |+|++..+++++   ......+++.+.+.+++||.+++.
T Consensus        68 d~i~~~~~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          68 DVIISDPPLHHL---VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EEEEEccceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999998862   378899999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.41  E-value=4.9e-12  Score=98.00  Aligned_cols=106  Identities=17%  Similarity=0.165  Sum_probs=80.0

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      +..+...++.+|||+|||+|.++..++... .+++++|+++.+++.+++++...        ++. ++.+.++|..+...
T Consensus        71 ~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~--------~~~-~v~~~~~d~~~~~~  140 (212)
T PRK00312         71 TELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQL--------GLH-NVSVRHGDGWKGWP  140 (212)
T ss_pred             HHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHC--------CCC-ceEEEECCcccCCC
Confidence            334455678899999999999888666443 58999999999999999987622        222 38899998754321


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                           ..+.||+|++...+.++          ...+.+.|+|||.+++...
T Consensus       141 -----~~~~fD~I~~~~~~~~~----------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        141 -----AYAPFDRILVTAAAPEI----------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             -----cCCCcCEEEEccCchhh----------hHHHHHhcCCCcEEEEEEc
Confidence                 24789999998766543          2457889999999998766

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.40  E-value=3.9e-12  Score=98.47  Aligned_cols=132  Identities=23%  Similarity=0.286  Sum_probs=93.6

Q ss_pred             hhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcc---cccccccCCC
Q 027388           66 LKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDAD---HHQRRKKFSF  142 (224)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~  142 (224)
                      .......+...+..+...++.+||..|||.|..+..++..+ .+|+|+|+|+.+++.+.+.......   .......-..
T Consensus        19 ~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~   97 (218)
T PF05724_consen   19 QGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQG-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG   97 (218)
T ss_dssp             -TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTT-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred             CCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCC-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence            34555666666666556677899999999999999888655 4999999999999998544321000   0000011234


Q ss_pred             CeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       143 ~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      +|+++++|+.+++..    ..++||+|+=..++.-+  +.+...++.+.+.++|+|||.+++
T Consensus        98 ~i~~~~gDfF~l~~~----~~g~fD~iyDr~~l~Al--pp~~R~~Ya~~l~~ll~p~g~~lL  153 (218)
T PF05724_consen   98 RITIYCGDFFELPPE----DVGKFDLIYDRTFLCAL--PPEMRERYAQQLASLLKPGGRGLL  153 (218)
T ss_dssp             SEEEEES-TTTGGGS----CHHSEEEEEECSSTTTS---GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred             ceEEEEcccccCChh----hcCCceEEEEecccccC--CHHHHHHHHHHHHHHhCCCCcEEE
Confidence            689999999887642    23689999988888777  677899999999999999999433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PHA03411 putative methyltransferase; Provisional

Probab=99.40  E-value=8e-12  Score=98.61  Aligned_cols=120  Identities=17%  Similarity=0.131  Sum_probs=90.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ....+|||+|||+|.++..++... ..+++++|+++.+++.+++++.              ++.++++|+.+...     
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~--------------~v~~v~~D~~e~~~-----  123 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP--------------EAEWITSDVFEFES-----  123 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc--------------CCEEEECchhhhcc-----
Confidence            345799999999999988876543 4689999999999999988743              47889999887642     


Q ss_pred             CCCCeeEEEEccccccccCC-HHH---------------HHHHHHHHHhhccCCeEEEEEeC---------ChHHHHHHh
Q 027388          162 DDAPFDICSCQFAMHYSWST-EAR---------------ARRALANVSALLRPGGTFIGTMP---------DANVIIKKL  216 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~-~~~---------------~~~~l~~~~~~lk~gG~li~~~~---------~~~~~~~~~  216 (224)
                       ...||+|+++-.+++.... ..+               ..+++.....+|+|+|.+++...         ........+
T Consensus       124 -~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l  202 (279)
T PHA03411        124 -NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWS  202 (279)
T ss_pred             -cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHH
Confidence             4689999998877764111 111               24677788889999997766422         346777888


Q ss_pred             hhcccc
Q 027388          217 REEHFC  222 (224)
Q Consensus       217 ~~~gf~  222 (224)
                      ++.||.
T Consensus       203 ~~~g~~  208 (279)
T PHA03411        203 KQTGLV  208 (279)
T ss_pred             HhcCcE
Confidence            888885

>PRK04457 spermidine synthase; Provisional

Probab=99.40  E-value=7.7e-12  Score=99.72  Aligned_cols=113  Identities=12%  Similarity=0.012  Sum_probs=82.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++++|||||||+|.++..++.. ...++++||+++.+++.|++.+..        .....+++++++|+.+.-..    
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--------~~~~~rv~v~~~Da~~~l~~----  132 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL--------PENGERFEVIEADGAEYIAV----  132 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC--------CCCCCceEEEECCHHHHHHh----
Confidence            46789999999999999888765 346899999999999999998762        22345789999998654321    


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ..++||+|++...-.......-....+++.+.+.|+|||++++...
T Consensus       133 ~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~  178 (262)
T PRK04457        133 HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW  178 (262)
T ss_pred             CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence            2468999997631111000111236899999999999999999644

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.39  E-value=2e-11  Score=96.76  Aligned_cols=124  Identities=19%  Similarity=0.196  Sum_probs=89.0

Q ss_pred             CCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           85 GDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      +.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++..            ..++++++|+.+.....   ..
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~------------~~~~~~~~D~~~~l~~~---~~  151 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD------------AGGTVHEGDLYDALPTA---LR  151 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH------------cCCEEEEeechhhcchh---cC
Confidence            4589999999999999887543 45899999999999999999762            12478888876432110   13


Q ss_pred             CCeeEEEEccccc------cc----------------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhhc
Q 027388          164 APFDICSCQFAMH------YS----------------WSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREE  219 (224)
Q Consensus       164 ~~~D~i~~~~~l~------~~----------------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~~  219 (224)
                      +.||+|+++-...      .+                .+....+..++..+.++|+|||++++.+..  ...+...+++.
T Consensus       152 ~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~  231 (251)
T TIGR03704       152 GRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARA  231 (251)
T ss_pred             CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHC
Confidence            5799999875321      00                001122457888888999999999988763  46778888888


Q ss_pred             cccc
Q 027388          220 HFCH  223 (224)
Q Consensus       220 gf~~  223 (224)
                      ||..
T Consensus       232 g~~~  235 (251)
T TIGR03704       232 GLIA  235 (251)
T ss_pred             CCCc
Confidence            8754

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.38  E-value=7.3e-12  Score=95.20  Aligned_cols=108  Identities=20%  Similarity=0.233  Sum_probs=74.2

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+|||+|||+|.++..++...  ..+++++|+|+.+      ..              .++.++++|+.+.....
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~--------------~~i~~~~~d~~~~~~~~   88 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI--------------ENVDFIRGDFTDEEVLN   88 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC--------------CCceEEEeeCCChhHHH
Confidence            34678999999999999988877543  3479999999854      11              13778888876532100


Q ss_pred             -c--cCCCCCeeEEEEccccc--------cccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          159 -V--LADDAPFDICSCQFAMH--------YSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       159 -~--~~~~~~~D~i~~~~~l~--------~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                       .  ..+.+.||+|++..+.+        +. ........++..+.++|+|||++++.....
T Consensus        89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~  149 (188)
T TIGR00438        89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHL-RSIDLVELALDIAKEVLKPKGNFVVKVFQG  149 (188)
T ss_pred             HHHHHhCCCCccEEEcCCCCCCCCCccccHH-HHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence             0  01356899999865421        11 011235789999999999999999965543

>PRK00811 spermidine synthase; Provisional

Probab=99.37  E-value=1e-11  Score=100.18  Aligned_cols=117  Identities=19%  Similarity=0.196  Sum_probs=84.8

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+++||+||||+|..+..+++. ...++++||+++.+++.|++.+.....    ...-..+++++.+|+......    
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~----~~~~d~rv~v~~~Da~~~l~~----  146 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAG----GAYDDPRVELVIGDGIKFVAE----  146 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcc----ccccCCceEEEECchHHHHhh----
Confidence            46789999999999999988865 456899999999999999998752100    000145689999998765321    


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ..++||+|++...-.+.....-....+++.+.+.|+|||++++...
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            3578999998754332210111236789999999999999998644

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.37  E-value=8.7e-12  Score=93.19  Aligned_cols=109  Identities=15%  Similarity=0.129  Sum_probs=80.4

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ++......++.+|||+|||+|.++..++.. ..+++++|+++.+++.+++++..           ..+++++++|+.+++
T Consensus         5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~-----------~~~v~ii~~D~~~~~   72 (169)
T smart00650        5 IVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA-----------ADNLTVIHGDALKFD   72 (169)
T ss_pred             HHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc-----------CCCEEEEECchhcCC
Confidence            444455567789999999999999999866 56899999999999999988751           236899999998876


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      .     +...||.|+++..++ +  ..+....++...  .+.++|++++..
T Consensus        73 ~-----~~~~~d~vi~n~Py~-~--~~~~i~~~l~~~--~~~~~~~l~~q~  113 (169)
T smart00650       73 L-----PKLQPYKVVGNLPYN-I--STPILFKLLEEP--PAFRDAVLMVQK  113 (169)
T ss_pred             c-----cccCCCEEEECCCcc-c--HHHHHHHHHhcC--CCcceEEEEEEH
Confidence            5     345699999876654 2  233344443322  244788888864

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.3e-11  Score=93.33  Aligned_cols=110  Identities=21%  Similarity=0.244  Sum_probs=85.1

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..+++.+.+.++.+|||||||+|..+.-+++... +|+.+|..+...+.|++++...+..         |+.+.++|..
T Consensus        61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~---------nV~v~~gDG~  130 (209)
T COG2518          61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE---------NVTVRHGDGS  130 (209)
T ss_pred             HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC---------ceEEEECCcc
Confidence            44456667788999999999999988887775444 9999999999999999998843322         4999999965


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .--     ....+||.|++..+...+  +        ..+.+.|++||++++-..
T Consensus       131 ~G~-----~~~aPyD~I~Vtaaa~~v--P--------~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         131 KGW-----PEEAPYDRIIVTAAAPEV--P--------EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             cCC-----CCCCCcCEEEEeeccCCC--C--------HHHHHhcccCCEEEEEEc
Confidence            321     146899999998877654  2        347788899999997543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.35  E-value=1.6e-11  Score=106.34  Aligned_cols=124  Identities=15%  Similarity=0.179  Sum_probs=90.6

Q ss_pred             CCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      +.+|||+|||+|.++..++.. ...+++++|+|+.+++.|++++.        ..++..++.++++|+.+. .     ..
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~--------~~~l~~~v~~~~~D~~~~-~-----~~  204 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAI--------KYEVTDRIQIIHSNWFEN-I-----EK  204 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH--------HcCCccceeeeecchhhh-C-----cC
Confidence            468999999999999988754 45689999999999999999876        234445688999997542 1     24


Q ss_pred             CCeeEEEEccccc--------------c-----cc---CCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhhc
Q 027388          164 APFDICSCQFAMH--------------Y-----SW---STEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREE  219 (224)
Q Consensus       164 ~~~D~i~~~~~l~--------------~-----~~---~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~~  219 (224)
                      ++||+|+++-...              |     ++   ++......++..+.++|+|||.+++....  ...+...+.+.
T Consensus       205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~  284 (506)
T PRK01544        205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDH  284 (506)
T ss_pred             CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhc
Confidence            6899999864211              0     00   01123466788899999999999987653  45677778888


Q ss_pred             ccc
Q 027388          220 HFC  222 (224)
Q Consensus       220 gf~  222 (224)
                      ||.
T Consensus       285 g~~  287 (506)
T PRK01544        285 GYN  287 (506)
T ss_pred             CCC
Confidence            874

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.34  E-value=1.6e-11  Score=96.24  Aligned_cols=129  Identities=22%  Similarity=0.329  Sum_probs=95.8

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ++..+.+.+|.+|||.|.|+|.++..++..  ..++|+.+|+.++..+.|++++.        ..++..++++.+.|+.+
T Consensus        32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~--------~~gl~~~v~~~~~Dv~~  103 (247)
T PF08704_consen   32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE--------RHGLDDNVTVHHRDVCE  103 (247)
T ss_dssp             HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH--------HTTCCTTEEEEES-GGC
T ss_pred             HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH--------HcCCCCCceeEecceec
Confidence            445567789999999999999999998864  45799999999999999999988        45667789999999975


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhc-cCCeEEEEEeCChHH---HHHHhhhccccc
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL-RPGGTFIGTMPDANV---IIKKLREEHFCH  223 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~l-k~gG~li~~~~~~~~---~~~~~~~~gf~~  223 (224)
                      ......  ....+|.|+...         +++-.++..+.+.| ++||++++-.|..+.   ..+.|++.||.+
T Consensus       104 ~g~~~~--~~~~~DavfLDl---------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~  166 (247)
T PF08704_consen  104 EGFDEE--LESDFDAVFLDL---------PDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD  166 (247)
T ss_dssp             G--STT---TTSEEEEEEES---------SSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred             cccccc--ccCcccEEEEeC---------CCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence            443111  247899999765         33445788899999 899999999998764   455677778753

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.33  E-value=1.7e-11  Score=110.20  Aligned_cols=127  Identities=18%  Similarity=0.200  Sum_probs=93.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-CCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++++|||+|||+|.++..++..+..+|++||+|+.+++.|++++..        .++. .+++++++|+.+....    
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~--------ng~~~~~v~~i~~D~~~~l~~----  604 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL--------NGLSGRQHRLIQADCLAWLKE----  604 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCCCccceEEEEccHHHHHHH----
Confidence            35789999999999999998876666799999999999999999873        3343 4689999998664211    


Q ss_pred             CCCCeeEEEEccccc-------cccCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhhccc
Q 027388          162 DDAPFDICSCQFAMH-------YSWSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~-------~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~~gf  221 (224)
                      ..++||+|++.-...       ..+....+...++..+.++|+|||.|++++..  .......+.++||
T Consensus       605 ~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~  673 (702)
T PRK11783        605 AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGL  673 (702)
T ss_pred             cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCC
Confidence            146899999864211       11122356778899999999999999886542  2333566666665

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.32  E-value=8.9e-12  Score=100.26  Aligned_cols=121  Identities=17%  Similarity=0.161  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe
Q 027388           69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC  148 (224)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~  148 (224)
                      ...|...++...++.+++.|||+|||+|.++...++.+..+|++||.|.-+ +.|.+.+..+        ++...++++.
T Consensus        45 t~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N--------~~~~ii~vi~  115 (346)
T KOG1499|consen   45 TLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDN--------GLEDVITVIK  115 (346)
T ss_pred             HHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhc--------CccceEEEee
Confidence            344555566666677899999999999999999988898999999999854 8888888743        4555689999


Q ss_pred             ccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       149 ~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      +.++++.+     +.+.+|+|++-+.=+++ --+..+..++-.--+.|+|||.++=
T Consensus       116 gkvEdi~L-----P~eKVDiIvSEWMGy~L-l~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  116 GKVEDIEL-----PVEKVDIIVSEWMGYFL-LYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             cceEEEec-----CccceeEEeehhhhHHH-HHhhhhhhhhhhhhhccCCCceEcc
Confidence            99998876     46899999987642222 2345677888888899999999873

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.32  E-value=1.3e-11  Score=94.84  Aligned_cols=111  Identities=22%  Similarity=0.289  Sum_probs=79.5

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      ...+++.+.+.++.+|||||||+|..+..++..  ....|+++|..+...+.|++++...        + ..++.++++|
T Consensus        61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~--------~-~~nv~~~~gd  131 (209)
T PF01135_consen   61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL--------G-IDNVEVVVGD  131 (209)
T ss_dssp             HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH--------T-THSEEEEES-
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh--------c-cCceeEEEcc
Confidence            444566667889999999999999888877754  2347999999999999999998732        2 2269999999


Q ss_pred             ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ...-..     ...+||.|++..+...+          -..+.+.|++||+|++-..
T Consensus       132 g~~g~~-----~~apfD~I~v~~a~~~i----------p~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  132 GSEGWP-----EEAPFDRIIVTAAVPEI----------PEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             GGGTTG-----GG-SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred             hhhccc-----cCCCcCEEEEeeccchH----------HHHHHHhcCCCcEEEEEEc
Confidence            754322     35789999998877543          1347788999999997543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.32  E-value=2.4e-11  Score=99.21  Aligned_cols=107  Identities=18%  Similarity=0.220  Sum_probs=79.2

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcC--CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ++..+...++.+|||||||+|.++..+++...  +.++++|+++.+++.|++++...        +. .++.++++|...
T Consensus        72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~--------g~-~nV~~i~gD~~~  142 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL--------GI-ENVIFVCGDGYY  142 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc--------CC-CcEEEEeCChhh
Confidence            34444556788999999999999998876432  46999999999999999887622        22 358889999765


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ...     ...+||+|++...+..+          ...+.+.|+|||.+++..
T Consensus       143 ~~~-----~~~~fD~Ii~~~g~~~i----------p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        143 GVP-----EFAPYDVIFVTVGVDEV----------PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             ccc-----ccCCccEEEECCchHHh----------HHHHHHhcCCCCEEEEEe
Confidence            433     24679999987655432          234677899999988753

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=99.31  E-value=2.1e-11  Score=93.94  Aligned_cols=104  Identities=18%  Similarity=0.306  Sum_probs=83.8

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .....|.|+|||.+.++.    .....|+.+|+-+                        .+-.++.||+.++|+     +
T Consensus       179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a------------------------~~~~V~~cDm~~vPl-----~  225 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVA------------------------VNERVIACDMRNVPL-----E  225 (325)
T ss_pred             cCceEEEecccchhhhhh----ccccceeeeeeec------------------------CCCceeeccccCCcC-----c
Confidence            456789999999997765    3345788888743                        124678999999998     6


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE-----eCChHHHHHHhhhcccccC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT-----MPDANVIIKKLREEHFCHS  224 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~-----~~~~~~~~~~~~~~gf~~~  224 (224)
                      ++++|+++++.+|.-     .+...++.++.|+|++||.|+|.     .++...+.+.+...||.++
T Consensus       226 d~svDvaV~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~  287 (325)
T KOG3045|consen  226 DESVDVAVFCLSLMG-----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK  287 (325)
T ss_pred             cCcccEEEeeHhhhc-----ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee
Confidence            899999998887753     68899999999999999999986     4456678888999999753

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.30  E-value=8.4e-11  Score=100.21  Aligned_cols=114  Identities=25%  Similarity=0.333  Sum_probs=83.2

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      +...++.+|||+|||+|..+..++.... ..++++|+++.+++.+++++..          .+.++.++++|+.+.... 
T Consensus       240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~----------~g~~~~~~~~D~~~~~~~-  308 (427)
T PRK10901        240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQR----------LGLKATVIVGDARDPAQW-  308 (427)
T ss_pred             cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH----------cCCCeEEEEcCcccchhh-
Confidence            3456788999999999999998876543 6899999999999999999862          233467889998764310 


Q ss_pred             ccCCCCCeeEEEEccc------c------ccccCCH-------HHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          159 VLADDAPFDICSCQFA------M------HYSWSTE-------ARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~------l------~~~~~~~-------~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                        ....+||.|++...      +      .|. ...       ..+..++..+.+.|+|||.+++++.
T Consensus       309 --~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~-~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        309 --WDGQPFDRILLDAPCSATGVIRRHPDIKWL-RRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             --cccCCCCEEEECCCCCcccccccCcccccc-CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence              02467999995431      1      011 011       1245789999999999999998864

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=1.7e-10  Score=92.71  Aligned_cols=119  Identities=19%  Similarity=0.284  Sum_probs=88.6

Q ss_pred             eEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCC
Q 027388           87 VVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP  165 (224)
Q Consensus        87 ~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  165 (224)
                      +|||+|||+|..++.++.... .+|+++|+|+.+++.|++++..        .++ .++.++++|+..-.       .++
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~--------~~l-~~~~~~~~dlf~~~-------~~~  176 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER--------NGL-VRVLVVQSDLFEPL-------RGK  176 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH--------cCC-ccEEEEeeeccccc-------CCc
Confidence            799999999999999986654 4999999999999999999873        333 44666666654322       359


Q ss_pred             eeEEEEccccc-----cc-------------c---CCHHHHHHHHHHHHhhccCCeEEEEEeC--ChHHHHHHhhhccc
Q 027388          166 FDICSCQFAMH-----YS-------------W---STEARARRALANVSALLRPGGTFIGTMP--DANVIIKKLREEHF  221 (224)
Q Consensus       166 ~D~i~~~~~l~-----~~-------------~---~~~~~~~~~l~~~~~~lk~gG~li~~~~--~~~~~~~~~~~~gf  221 (224)
                      ||+|+++-..-     +.             +   ++.+....++..+.+.|+|||++++...  ....+.+.+.+.||
T Consensus       177 fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~  255 (280)
T COG2890         177 FDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGF  255 (280)
T ss_pred             eeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCC
Confidence            99999874210     00             0   1223467788999999999999999876  44678888888883

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.29  E-value=5.6e-11  Score=101.48  Aligned_cols=130  Identities=18%  Similarity=0.228  Sum_probs=90.4

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      +...++.+|||+|||+|..+..++..  ..++++++|+++.+++.+++++..        .++. ++.++++|+...+..
T Consensus       248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r--------~g~~-~v~~~~~D~~~~~~~  318 (434)
T PRK14901        248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR--------LGLK-SIKILAADSRNLLEL  318 (434)
T ss_pred             hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH--------cCCC-eEEEEeCChhhcccc
Confidence            34567889999999999999988764  346899999999999999999873        2333 489999998765410


Q ss_pred             cccCCCCCeeEEEEc------cccccccC-----CHH-------HHHHHHHHHHhhccCCeEEEEEeC------ChHHHH
Q 027388          158 KVLADDAPFDICSCQ------FAMHYSWS-----TEA-------RARRALANVSALLRPGGTFIGTMP------DANVII  213 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~------~~l~~~~~-----~~~-------~~~~~l~~~~~~lk~gG~li~~~~------~~~~~~  213 (224)
                      . ....+.||.|++.      +++.+..+     +..       .+..++.++.+.|||||.|+.+|.      |...+.
T Consensus       319 ~-~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~  397 (434)
T PRK14901        319 K-PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIE  397 (434)
T ss_pred             c-ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHH
Confidence            0 0024689999963      23322100     111       257889999999999999998764      233444


Q ss_pred             HHhhhc
Q 027388          214 KKLREE  219 (224)
Q Consensus       214 ~~~~~~  219 (224)
                      ..+++.
T Consensus       398 ~~l~~~  403 (434)
T PRK14901        398 QFLARH  403 (434)
T ss_pred             HHHHhC
Confidence            555543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.27  E-value=6.5e-11  Score=99.41  Aligned_cols=116  Identities=15%  Similarity=0.132  Sum_probs=83.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-CCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++++|||+|||+|.+++..+..+..++++||+|+.+++.|++++..        .++. .+++++++|+.+.... ...
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~--------Ngl~~~~v~~i~~D~~~~l~~-~~~  289 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL--------NKLDLSKAEFVRDDVFKLLRT-YRD  289 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCCcEEEEEccHHHHHHH-HHh
Confidence            46789999999999998876655556899999999999999999873        3443 3689999998764211 000


Q ss_pred             CCCCeeEEEEccccccc-----cCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          162 DDAPFDICSCQFAMHYS-----WSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~-----~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ....||+|++.-...--     .........++....++|+|||.|+..+.
T Consensus       290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            24589999987543110     00012455667778999999999997654

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.26  E-value=8.2e-11  Score=92.32  Aligned_cols=109  Identities=15%  Similarity=0.108  Sum_probs=83.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++++|||+|||+|.-+..++..  ..++++++|+++.+++.|++++.        ..++..+++++.+|+.+......
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~--------~~gl~~~i~~~~gda~~~L~~l~  137 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK--------KAGVDHKINFIQSDALSALDQLL  137 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEEccHHHHHHHHH
Confidence            357889999999999877766643  35699999999999999999987        34566679999999876421000


Q ss_pred             -cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 -LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 -~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ....++||+|++...       .+....++..+.++|+|||++++.
T Consensus       138 ~~~~~~~fD~VfiDa~-------k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        138 NNDPKPEFDFAFVDAD-------KPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             hCCCCCCCCEEEECCC-------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence             002468999987642       245667899999999999999974

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.26  E-value=8e-11  Score=100.85  Aligned_cols=111  Identities=20%  Similarity=0.259  Sum_probs=82.6

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+|||+|||+|..+..++..  ..++++++|+|+.+++.+++++..        .++. ++.++++|+....   
T Consensus       247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~--------~g~~-~v~~~~~Da~~~~---  314 (445)
T PRK14904        247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA--------LGIT-IIETIEGDARSFS---  314 (445)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH--------hCCC-eEEEEeCcccccc---
Confidence            3457789999999999988877653  345899999999999999999873        2332 4889999987654   


Q ss_pred             ccCCCCCeeEEEEc----c--ccc------cccCCHH-------HHHHHHHHHHhhccCCeEEEEEeC
Q 027388          159 VLADDAPFDICSCQ----F--AMH------YSWSTEA-------RARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       159 ~~~~~~~~D~i~~~----~--~l~------~~~~~~~-------~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                         +...||+|++.    +  ++.      |.+ +..       .+..++.++.+.|+|||+|+++|.
T Consensus       315 ---~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~-~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc  378 (445)
T PRK14904        315 ---PEEQPDAILLDAPCTGTGVLGRRAELRWKL-TPEKLAELVGLQAELLDHAASLLKPGGVLVYATC  378 (445)
T ss_pred             ---cCCCCCEEEEcCCCCCcchhhcCcchhhcC-CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence               24689999963    1  111      111 111       245789999999999999999875

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.25  E-value=2e-11  Score=90.31  Aligned_cols=80  Identities=20%  Similarity=0.325  Sum_probs=65.8

Q ss_pred             EEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHH
Q 027388          111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA  190 (224)
Q Consensus       111 ~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~  190 (224)
                      +|+|+|+.|++.|+++....      ......+++++++|+.+++.     .+++||+|++.++++++    .++..+++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~------~~~~~~~i~~~~~d~~~lp~-----~~~~fD~v~~~~~l~~~----~d~~~~l~   65 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLK------ARSCYKCIEWIEGDAIDLPF-----DDCEFDAVTMGYGLRNV----VDRLRAMK   65 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcc------cccCCCceEEEEechhhCCC-----CCCCeeEEEecchhhcC----CCHHHHHH
Confidence            48999999999998775410      11123468999999998876     57899999999999988    67899999


Q ss_pred             HHHhhccCCeEEEEE
Q 027388          191 NVSALLRPGGTFIGT  205 (224)
Q Consensus       191 ~~~~~lk~gG~li~~  205 (224)
                      ++.++|||||.|++.
T Consensus        66 ei~rvLkpGG~l~i~   80 (160)
T PLN02232         66 EMYRVLKPGSRVSIL   80 (160)
T ss_pred             HHHHHcCcCeEEEEE
Confidence            999999999999865

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.25  E-value=5.2e-11  Score=95.21  Aligned_cols=113  Identities=16%  Similarity=0.132  Sum_probs=82.8

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      .+.++.+|||+|||+|..+..++..  ..+.++++|+++.+++.+++++..        .++ .++.+++.|+..+..  
T Consensus        68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~--------~g~-~~v~~~~~D~~~~~~--  136 (264)
T TIGR00446        68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR--------CGV-LNVAVTNFDGRVFGA--  136 (264)
T ss_pred             CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH--------cCC-CcEEEecCCHHHhhh--
Confidence            4567889999999999999888764  245899999999999999999873        233 248889999876543  


Q ss_pred             ccCCCCCeeEEEEcc------cccccc-----CCH-------HHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          159 VLADDAPFDICSCQF------AMHYSW-----STE-------ARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~------~l~~~~-----~~~-------~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                         ..+.||.|++.-      ++..-.     -+.       ..+..+|..+.+.|||||+|+.+|.
T Consensus       137 ---~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc  200 (264)
T TIGR00446       137 ---AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC  200 (264)
T ss_pred             ---hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence               235699999642      111100     011       1345699999999999999998865

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.24  E-value=1.8e-10  Score=98.25  Aligned_cols=117  Identities=18%  Similarity=0.177  Sum_probs=82.0

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      +.+.++.+|||+|||+|..+..++... .++++++|+++.+++.+++++..        .++...+.+..+|....... 
T Consensus       234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r--------~g~~~~v~~~~~d~~~~~~~-  304 (426)
T TIGR00563       234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKR--------LGLTIKAETKDGDGRGPSQW-  304 (426)
T ss_pred             hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHH--------cCCCeEEEEecccccccccc-
Confidence            455678999999999999999887643 46899999999999999999872        23332234466665433210 


Q ss_pred             ccCCCCCeeEEEEc------cccccccC-----CH-------HHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          159 VLADDAPFDICSCQ------FAMHYSWS-----TE-------ARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       159 ~~~~~~~~D~i~~~------~~l~~~~~-----~~-------~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                        .....||.|++.      +++....+     +.       ..+..+|.++.+.|||||.|+++|.
T Consensus       305 --~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc  369 (426)
T TIGR00563       305 --AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC  369 (426)
T ss_pred             --ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence              024679999953      23332210     11       1257799999999999999999865

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.24  E-value=2.4e-11  Score=92.11  Aligned_cols=108  Identities=17%  Similarity=0.329  Sum_probs=91.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      +....++|||||-|.....+...+..+++.+|.|..|++.++..-.           ....+.+..+|-+.+++     .
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-----------p~i~~~~~v~DEE~Ldf-----~  134 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-----------PSIETSYFVGDEEFLDF-----K  134 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-----------CceEEEEEecchhcccc-----c
Confidence            4567899999999999999887888899999999999999986532           13335678888877776     6


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~  210 (224)
                      ++++|+|+++..+||+    +++...+.+|...|||+|.|+.++...+
T Consensus       135 ens~DLiisSlslHW~----NdLPg~m~~ck~~lKPDg~Fiasmlggd  178 (325)
T KOG2940|consen  135 ENSVDLIISSLSLHWT----NDLPGSMIQCKLALKPDGLFIASMLGGD  178 (325)
T ss_pred             ccchhhhhhhhhhhhh----ccCchHHHHHHHhcCCCccchhHHhccc
Confidence            8999999999999998    8999999999999999999997755433

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.24  E-value=1.8e-10  Score=98.07  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=84.7

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      +.+.++.+|||+|||+|..+..++..  ..+.++++|+++.+++.+++++..        .++. ++.+.++|+..++..
T Consensus       233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r--------~g~~-~v~~~~~Da~~l~~~  303 (431)
T PRK14903        233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR--------LKLS-SIEIKIADAERLTEY  303 (431)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH--------cCCC-eEEEEECchhhhhhh
Confidence            34567889999999999999888764  356899999999999999999872        2333 478999998765410


Q ss_pred             cccCCCCCeeEEEEcc---ccccccC--------CH-------HHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          158 KVLADDAPFDICSCQF---AMHYSWS--------TE-------ARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~---~l~~~~~--------~~-------~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                          ..+.||.|++.-   .+..+-.        +.       ..+.++|.++.+.|+|||.++.+|.
T Consensus       304 ----~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  367 (431)
T PRK14903        304 ----VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC  367 (431)
T ss_pred             ----hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                246899999632   1111100        01       1346789999999999999999866

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.23  E-value=7.7e-11  Score=89.60  Aligned_cols=117  Identities=16%  Similarity=0.219  Sum_probs=74.5

Q ss_pred             CCCeEEEecCCCchhHHHH----Hh---hc---CCeEEEEeCChhHHHHHHHhccCCccc-----------cccc-----
Q 027388           84 RGDVVLDLACGKGGDLIKW----DK---AK---IGYYVGIDIAEGSIEDCRTRYNGDADH-----------HQRR-----  137 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l----~~---~~---~~~~~gvD~s~~~~~~a~~~~~~~~~~-----------~~~~-----  137 (224)
                      ...+|+.+||++|.=...+    .+   ..   .-+++|+|+|+.+++.|++-.-.....           +.+.     
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            5679999999999833332    22   11   237999999999999998865321111           0000     


Q ss_pred             ---ccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          138 ---KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       138 ---~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                         ..+...|.|...|+.+...     ..+.||+|+|.+|+.|+  ..+....+++.+.+.|+|||+|++...
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~-----~~~~fD~I~CRNVlIYF--~~~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDP-----PFGRFDLIFCRNVLIYF--DPETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS---HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             eEChHHcCceEEEecccCCCCc-----ccCCccEEEecCEEEEe--CHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence               1122458888899877222     46899999999999998  778899999999999999999998743

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK01581 speE spermidine synthase; Validated

Probab=99.23  E-value=2.5e-10  Score=93.51  Aligned_cols=134  Identities=15%  Similarity=0.107  Sum_probs=88.4

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...+++||+||||+|..+..+++.. ..++++||+++.+++.|++... ....+ +..--+.+++++.+|+.++...   
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~-L~~~~-~~~~~DpRV~vvi~Da~~fL~~---  222 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPE-LVSLN-KSAFFDNRVNVHVCDAKEFLSS---  222 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccc-cchhc-cccCCCCceEEEECcHHHHHHh---
Confidence            3567899999999999888887653 4689999999999999996211 00000 0001246799999998875321   


Q ss_pred             CCCCCeeEEEEccccccc-cCCHHHHHHHHHHHHhhccCCeEEEEEeCCh-------HHHHHHhhhccc
Q 027388          161 ADDAPFDICSCQFAMHYS-WSTEARARRALANVSALLRPGGTFIGTMPDA-------NVIIKKLREEHF  221 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~-~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~-------~~~~~~~~~~gf  221 (224)
                       ..+.||+|++...-... ....-.-..+++.+++.|+|||++++.....       ..+...+++.+|
T Consensus       223 -~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~  290 (374)
T PRK01581        223 -PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGL  290 (374)
T ss_pred             -cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCC
Confidence             35689999987421000 0011223678999999999999998864432       224455566554

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.23  E-value=2e-10  Score=87.59  Aligned_cols=124  Identities=19%  Similarity=0.300  Sum_probs=84.3

Q ss_pred             CCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ....+||||||.|.++..++... ...++|+|++...+..+.+++...         ...|+.++++|+..+.. . ..+
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---------~l~Nv~~~~~da~~~l~-~-~~~   85 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---------GLKNVRFLRGDARELLR-R-LFP   85 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---------TTSSEEEEES-CTTHHH-H-HST
T ss_pred             CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---------cccceEEEEccHHHHHh-h-ccc
Confidence            34489999999999999998764 457889999999999998887632         23469999999877421 1 114


Q ss_pred             CCCeeEEEEccccccccCC----HHHHHHHHHHHHhhccCCeEEEEEeCChH---HHHHHhhh
Q 027388          163 DAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPDAN---VIIKKLRE  218 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~----~~~~~~~l~~~~~~lk~gG~li~~~~~~~---~~~~~~~~  218 (224)
                      ++++|.|+.++.==|.-..    .--...++..+.++|+|||.|.+.|-+..   .+.+.+.+
T Consensus        86 ~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~  148 (195)
T PF02390_consen   86 PGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE  148 (195)
T ss_dssp             TTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred             CCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            6899999977632111000    00136799999999999999999998764   34444444

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=1.9e-10  Score=91.47  Aligned_cols=114  Identities=22%  Similarity=0.303  Sum_probs=83.0

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      +..+....+.+|||+|||.|-++..+++.. ..+++.+|.+...++.|++++..++..        . ..++..|+..-.
T Consensus       151 l~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~--------~-~~v~~s~~~~~v  221 (300)
T COG2813         151 LETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE--------N-TEVWASNLYEPV  221 (300)
T ss_pred             HHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC--------c-cEEEEecccccc
Confidence            444444556699999999999999998765 468999999999999999998843222        1 245566653322


Q ss_pred             cccccCCCCCeeEEEEccccccccCC-HHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWST-EARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~-~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                             .++||+|+|+-.+|--... ..-..+++....+.|++||.|.+..
T Consensus       222 -------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa  266 (300)
T COG2813         222 -------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA  266 (300)
T ss_pred             -------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence                   3499999999887743111 1122478999999999999887753

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.22  E-value=1.8e-10  Score=88.08  Aligned_cols=127  Identities=20%  Similarity=0.211  Sum_probs=82.1

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCccc-cccc----------------------
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADH-HQRR----------------------  137 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~-~~~~----------------------  137 (224)
                      ...+..+|||||.+|.++..+++.. ...++|+|+++..++.|++++..--.. +...                      
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~  135 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR  135 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence            3567889999999999999998764 456889999999999999987521110 0000                      


Q ss_pred             ---ccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccC--CHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          138 ---KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS--TEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       138 ---~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~--~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                         .....++-+...+..-...+-+......||+|+|..+.-|+.-  ..+.+..+|+++.++|.|||+|++....
T Consensus       136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQp  211 (288)
T KOG2899|consen  136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQP  211 (288)
T ss_pred             cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCc
Confidence               0111122222222110000000013579999999876444311  4568999999999999999999997443

>PRK03612 spermidine synthase; Provisional

Probab=99.22  E-value=7.9e-11  Score=102.54  Aligned_cols=132  Identities=16%  Similarity=0.039  Sum_probs=90.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCccccccccc-CCCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      +++++|||||||+|..+..+++... .++++||+++.+++.++++..... .|  ... -+.+++++.+|..+....   
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~-~~--~~~~~dprv~vi~~Da~~~l~~---  369 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRA-LN--GGALDDPRVTVVNDDAFNWLRK---  369 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchh-hh--ccccCCCceEEEEChHHHHHHh---
Confidence            4678999999999999988876544 699999999999999998421000 00  001 135689999998764321   


Q ss_pred             CCCCCeeEEEEccccccccC-CHHHHHHHHHHHHhhccCCeEEEEEeCC-------hHHHHHHhhhccc
Q 027388          161 ADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPD-------ANVIIKKLREEHF  221 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~-~~~~~~~~l~~~~~~lk~gG~li~~~~~-------~~~~~~~~~~~gf  221 (224)
                       ..++||+|++......... ..-....+++.+++.|+|||++++....       ...+.+.+++.||
T Consensus       370 -~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        370 -LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             -CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence             2478999999754322100 0011246889999999999999986432       2356667777776

>TIGR00417 speE spermidine synthase

Probab=99.20  E-value=2.8e-10  Score=91.34  Aligned_cols=115  Identities=19%  Similarity=0.165  Sum_probs=81.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+++||+||||+|..+..++... ..+++++|+++.+++.+++.+.....     ..-..+++++.+|..+....    
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~-----~~~~~~v~i~~~D~~~~l~~----  141 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG-----SYDDPRVDLQIDDGFKFLAD----  141 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc-----cccCCceEEEECchHHHHHh----
Confidence            456799999999999888887654 56899999999999999987652100     01134577888887553221    


Q ss_pred             CCCCeeEEEEccccccccCCHHH--HHHHHHHHHhhccCCeEEEEEeCC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEAR--ARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~--~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ..+.||+|++.......  ....  ...+++.+.+.|+|||++++...+
T Consensus       142 ~~~~yDvIi~D~~~~~~--~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       142 TENTFDVIIVDSTDPVG--PAETLFTKEFYELLKKALNEDGIFVAQSES  188 (270)
T ss_pred             CCCCccEEEEeCCCCCC--cccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            24689999987642221  1112  468899999999999999987543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.18  E-value=2.3e-10  Score=98.09  Aligned_cols=114  Identities=20%  Similarity=0.232  Sum_probs=82.9

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+|||+|||+|..+..++..  ..+.++++|+++.+++.+++++..        .++. ++.++++|+.+.... 
T Consensus       247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~--------~g~~-~v~~~~~D~~~~~~~-  316 (444)
T PRK14902        247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR--------LGLT-NIETKALDARKVHEK-  316 (444)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCC-eEEEEeCCcccccch-
Confidence            4457789999999999999988864  356899999999999999998862        2333 389999998765310 


Q ss_pred             ccCCCCCeeEEEEccc------cccc-----cCCHHH-------HHHHHHHHHhhccCCeEEEEEeC
Q 027388          159 VLADDAPFDICSCQFA------MHYS-----WSTEAR-------ARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~------l~~~-----~~~~~~-------~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                         -.+.||+|++...      +.+.     ..+..+       +..++..+.+.|+|||.|+.++.
T Consensus       317 ---~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc  380 (444)
T PRK14902        317 ---FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC  380 (444)
T ss_pred             ---hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence               1268999997532      1100     001112       35689999999999999998754

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.18  E-value=2.5e-10  Score=88.79  Aligned_cols=94  Identities=18%  Similarity=0.243  Sum_probs=75.1

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ...++||||+|.|..+..++ ..+.+|+++|.|..|....+++-                .+++  +..+...     ..
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~kg----------------~~vl--~~~~w~~-----~~  149 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKKG----------------FTVL--DIDDWQQ-----TD  149 (265)
T ss_pred             cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhCC----------------CeEE--ehhhhhc-----cC
Confidence            45789999999999999986 57779999999999988877652                2222  2222221     34


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .+||+|.|.+++..+    ..+..+|+.+++.|+|+|.+++.
T Consensus       150 ~~fDvIscLNvLDRc----~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  150 FKFDVISCLNVLDRC----DRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             CceEEEeehhhhhcc----CCHHHHHHHHHHHhCCCCEEEEE
Confidence            689999999999877    77899999999999999999975

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.18  E-value=3.4e-10  Score=96.94  Aligned_cols=126  Identities=19%  Similarity=0.200  Sum_probs=84.9

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ++..+...++.+|||+|||+|.++..++... .+++|+|+|+.+++.|++++..        .++ .++.++++|+.+..
T Consensus       289 vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~--------~~~-~~v~~~~~d~~~~l  358 (443)
T PRK13168        289 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARR--------NGL-DNVTFYHANLEEDF  358 (443)
T ss_pred             HHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHH--------cCC-CceEEEEeChHHhh
Confidence            3333444567899999999999999887554 6899999999999999998762        222 25899999986532


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHH---hhhccc
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK---LREEHF  221 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~---~~~~gf  221 (224)
                      . ......+.||+|+++-.-.       .....+..+.+ ++++++++++. |+..+.+.   |.+.||
T Consensus       359 ~-~~~~~~~~fD~Vi~dPPr~-------g~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~~L~~~gY  417 (443)
T PRK13168        359 T-DQPWALGGFDKVLLDPPRA-------GAAEVMQALAK-LGPKRIVYVSC-NPATLARDAGVLVEAGY  417 (443)
T ss_pred             h-hhhhhcCCCCEEEECcCCc-------ChHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHHHHhhCCc
Confidence            1 0000246799999865322       12344554544 68899888886 55544443   334555

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.17  E-value=7.3e-10  Score=84.58  Aligned_cols=108  Identities=8%  Similarity=-0.016  Sum_probs=78.2

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ..+.+|||+|||+|.+++.++.....+++++|.++.+++.+++++..        .++ .++.++++|+.+....    .
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~--------~~~-~~v~~~~~D~~~~l~~----~  118 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLAT--------LKA-GNARVVNTNALSFLAQ----P  118 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHH--------hCC-CcEEEEEchHHHHHhh----c
Confidence            45679999999999999876555667999999999999999998762        222 2588999998653211    2


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHh--hccCCeEEEEEeCC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPD  208 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~--~lk~gG~li~~~~~  208 (224)
                      ..+||+|+++-.+..     .....++..+..  +|++++++++++..
T Consensus       119 ~~~fDlV~~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        119 GTPHNVVFVDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             CCCceEEEECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            356999999876321     123344444444  47999999998664

>PLN02366 spermidine synthase

Probab=99.17  E-value=3.5e-10  Score=91.88  Aligned_cols=116  Identities=18%  Similarity=0.142  Sum_probs=83.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+++||+||||.|..+..+++.. ..+++.||+++.+++.|++.+....     ...-+.+++++.+|+...... .  
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~-----~~~~dpRv~vi~~Da~~~l~~-~--  161 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLA-----VGFDDPRVNLHIGDGVEFLKN-A--  161 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhc-----cccCCCceEEEEChHHHHHhh-c--
Confidence            567899999999999999888653 4689999999999999999875210     001145799999997654321 0  


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      +.+.||+|++...-.+.....-....+++.+++.|+|||+++...
T Consensus       162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            246899999865432211011123678999999999999998753

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.17  E-value=4.5e-10  Score=90.95  Aligned_cols=144  Identities=24%  Similarity=0.317  Sum_probs=104.1

Q ss_pred             CCceehhhhHHHHHHHHHHH-hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccccc
Q 027388           61 SPIIHLKKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK  139 (224)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~  139 (224)
                      .|++.+..+...+.+...++ ...+|..|||--||||++++... .-+..++|+|++..|++-|+.++...        +
T Consensus       173 RPf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y--------~  243 (347)
T COG1041         173 RPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYY--------G  243 (347)
T ss_pred             CCccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhh--------C
Confidence            35666667777777776665 67888999999999999999875 45669999999999999999998721        1


Q ss_pred             CCCCeeEEe-ccccccccccccCCCCCeeEEEEcccccccc----CC-HHHHHHHHHHHHhhccCCeEEEEEeCChHHHH
Q 027388          140 FSFPARLIC-GDCYEVHLDKVLADDAPFDICSCQFAMHYSW----ST-EARARRALANVSALLRPGGTFIGTMPDANVII  213 (224)
Q Consensus       140 ~~~~v~~~~-~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~----~~-~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~  213 (224)
                      +.. ..+.. +|+.++++     +...+|.|++.....--.    .. ..-...+|..+.++|++||++++..|  ....
T Consensus       244 i~~-~~~~~~~Da~~lpl-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p--~~~~  315 (347)
T COG1041         244 IED-YPVLKVLDATNLPL-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP--RDPR  315 (347)
T ss_pred             cCc-eeEEEecccccCCC-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC--Ccch
Confidence            122 33344 49999887     456799999875332210    00 24478899999999999999999988  2223


Q ss_pred             HHhhhccc
Q 027388          214 KKLREEHF  221 (224)
Q Consensus       214 ~~~~~~gf  221 (224)
                      ..+.+.||
T Consensus       316 ~~~~~~~f  323 (347)
T COG1041         316 HELEELGF  323 (347)
T ss_pred             hhHhhcCc
Confidence            44444444

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.17  E-value=5.3e-10  Score=84.53  Aligned_cols=109  Identities=18%  Similarity=0.166  Sum_probs=79.9

Q ss_pred             eEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc---cCC
Q 027388           87 VVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV---LAD  162 (224)
Q Consensus        87 ~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~  162 (224)
                      +|||||||||.++..++.... -...-.|+++..+..........        ++..-..-+..|+...+..-.   ...
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~--------~~~Nv~~P~~lDv~~~~w~~~~~~~~~   99 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA--------GLPNVRPPLALDVSAPPWPWELPAPLS   99 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc--------CCcccCCCeEeecCCCCCccccccccC
Confidence            599999999999999987543 35669999998876666655421        222212345556654422110   012


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ...||.|+|.+++|..  ++.....+|+...++|++||.|++.
T Consensus       100 ~~~~D~i~~~N~lHI~--p~~~~~~lf~~a~~~L~~gG~L~~Y  140 (204)
T PF06080_consen  100 PESFDAIFCINMLHIS--PWSAVEGLFAGAARLLKPGGLLFLY  140 (204)
T ss_pred             CCCcceeeehhHHHhc--CHHHHHHHHHHHHHhCCCCCEEEEe
Confidence            4699999999999987  8999999999999999999999986

The function of this family is unknown.

>PHA03412 putative methyltransferase; Provisional

Probab=99.17  E-value=2.4e-10  Score=88.41  Aligned_cols=117  Identities=16%  Similarity=0.135  Sum_probs=80.9

Q ss_pred             cCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh----cCCeEEEEeCChhHHHHHHHhccCCccccc
Q 027388           60 ASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQ  135 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~  135 (224)
                      ...++++..+...+   +..  ...+.+|||+|||+|.++..++..    ....++++|+++.+++.|+++..       
T Consensus        30 ~GqFfTP~~iAr~~---~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------   97 (241)
T PHA03412         30 LGAFFTPIGLARDF---TID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------   97 (241)
T ss_pred             CCccCCCHHHHHHH---HHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------
Confidence            34455556653332   111  234679999999999999987753    23589999999999999998754       


Q ss_pred             ccccCCCCeeEEeccccccccccccCCCCCeeEEEEcccccccc--------CCHHHHHHHHHHHHhhccCCeE
Q 027388          136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW--------STEARARRALANVSALLRPGGT  201 (224)
Q Consensus       136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~--------~~~~~~~~~l~~~~~~lk~gG~  201 (224)
                             ++.++++|+.....      ..+||+|+++--+.-.-        +.......++....+++++|+.
T Consensus        98 -------~~~~~~~D~~~~~~------~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412         98 -------EATWINADALTTEF------DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             -------CCEEEEcchhcccc------cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence                   37889999876543      46899999986544220        0112355688888887777775

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=2.7e-10  Score=84.24  Aligned_cols=118  Identities=16%  Similarity=0.105  Sum_probs=81.3

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..-.+++|+|+|||||.+++..+..+..+|++||+++.+++.++++..          .+..++.|+++|+.++.     
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~----------~l~g~v~f~~~dv~~~~-----  106 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAE----------ELLGDVEFVVADVSDFR-----  106 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHH----------hhCCceEEEEcchhhcC-----
Confidence            345678999999999999998877788899999999999999999987          24666999999998764     


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE-E-EeCChHHHHHHhhhccc
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI-G-TMPDANVIIKKLREEHF  221 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li-~-~~~~~~~~~~~~~~~gf  221 (224)
                         ..+|.++.+-.+.-.- ...| ..++....++.+   +++ + ..+..+.+.....+.|+
T Consensus       107 ---~~~dtvimNPPFG~~~-rhaD-r~Fl~~Ale~s~---vVYsiH~a~~~~f~~~~~~~~G~  161 (198)
T COG2263         107 ---GKFDTVIMNPPFGSQR-RHAD-RPFLLKALEISD---VVYSIHKAGSRDFVEKFAADLGG  161 (198)
T ss_pred             ---CccceEEECCCCcccc-ccCC-HHHHHHHHHhhh---eEEEeeccccHHHHHHHHHhcCC
Confidence               5788888876544221 1111 223333333332   221 1 23345666666666664

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.15  E-value=6e-10  Score=88.00  Aligned_cols=99  Identities=21%  Similarity=0.256  Sum_probs=78.7

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ......+|||||+|.|.++..+++. ...+++.+|+ +..++.+++               ..+++++.+|+. .+.   
T Consensus        97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------------~~rv~~~~gd~f-~~~---  156 (241)
T PF00891_consen   97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------------ADRVEFVPGDFF-DPL---  156 (241)
T ss_dssp             TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------------TTTEEEEES-TT-TCC---
T ss_pred             cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------------ccccccccccHH-hhh---
Confidence            3446678999999999999999875 3458999999 667777776               225999999997 443   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC--eEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG--GTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g--G~li~~  205 (224)
                        + . +|+++..+++|.+  +.++...+|+++++.|+||  |.|+|.
T Consensus       157 --P-~-~D~~~l~~vLh~~--~d~~~~~iL~~~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  157 --P-V-ADVYLLRHVLHDW--SDEDCVKILRNAAAALKPGKDGRLLII  198 (241)
T ss_dssp             --S-S-ESEEEEESSGGGS---HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred             --c-c-ccceeeehhhhhc--chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence              2 3 9999999999998  7889999999999999998  998875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=99.14  E-value=4e-10  Score=90.42  Aligned_cols=118  Identities=17%  Similarity=0.188  Sum_probs=85.3

Q ss_pred             CCCeEEEecCCCchhHHHHH----hh-----cCCeEEEEeCChhHHHHHHHhccCCcc----------------------
Q 027388           84 RGDVVLDLACGKGGDLIKWD----KA-----KIGYYVGIDIAEGSIEDCRTRYNGDAD----------------------  132 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~----~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~----------------------  132 (224)
                      ...+|+..||+||.=...++    +.     ...+++|+|+|+.+++.|++..-....                      
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            34799999999998333322    21     124699999999999999987532110                      


Q ss_pred             cccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          133 HHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       133 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .......+...|.|.+.|+.+.+.+    ..+.||+|+|.+++.|+  +.+....++..+.+.|+|||+|++...
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~----~~~~fD~I~cRNvliyF--~~~~~~~vl~~l~~~L~pgG~L~lG~s  263 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWA----VPGPFDAIFCRNVMIYF--DKTTQERILRRFVPLLKPDGLLFAGHS  263 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCc----cCCCcceeeHhhHHhcC--CHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            0001122345678888888764331    25789999999999998  778899999999999999999998754

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.13  E-value=6.3e-10  Score=85.29  Aligned_cols=109  Identities=22%  Similarity=0.271  Sum_probs=83.4

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++++||||||++|.-+..++..  ..++++.+|+++...+.|++.+.        ..++..+++++.+|+.+.-....
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~--------~ag~~~~I~~~~gda~~~l~~l~  114 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFR--------KAGLDDRIEVIEGDALEVLPELA  114 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHH--------HTTGGGGEEEEES-HHHHHHHHH
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHH--------hcCCCCcEEEEEeccHhhHHHHH
Confidence            357889999999999988888764  35799999999999999999987        45566689999999876421100


Q ss_pred             -cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 -LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 -~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ....++||+|+....-       .....++..+.++|++||++++.
T Consensus       115 ~~~~~~~fD~VFiDa~K-------~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  115 NDGEEGQFDFVFIDADK-------RNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             HTTTTTSEEEEEEESTG-------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hccCCCceeEEEEcccc-------cchhhHHHHHhhhccCCeEEEEc
Confidence             0013689999987642       45677888899999999999986

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02672 methionine S-methyltransferase

Probab=99.13  E-value=1.1e-09  Score=101.16  Aligned_cols=134  Identities=16%  Similarity=0.127  Sum_probs=92.1

Q ss_pred             CCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCccc-c------cccccCCCCeeEEecccccccc
Q 027388           85 GDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADH-H------QRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~-~------~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      +.+|||+|||+|.+++.++... ..+++++|+|+.+++.|++++..++.. +      .....+..+++++++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            4689999999999999988654 368999999999999999998632210 0      0001223468999999865321


Q ss_pred             ccccCCCCCeeEEEEccccc--------------c------------c--------cCCHHHHHHHHHHHHhhccCCeEE
Q 027388          157 DKVLADDAPFDICSCQFAMH--------------Y------------S--------WSTEARARRALANVSALLRPGGTF  202 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~--------------~------------~--------~~~~~~~~~~l~~~~~~lk~gG~l  202 (224)
                      .    ....||+|+++-...              |            .        .++..-...++....++|+|||.+
T Consensus       199 ~----~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l  274 (1082)
T PLN02672        199 D----NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIM  274 (1082)
T ss_pred             c----cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEE
Confidence            0    123699999874210              0            0        011223467788888999999999


Q ss_pred             EEEeCCh--HHHH-HHhhhcccc
Q 027388          203 IGTMPDA--NVII-KKLREEHFC  222 (224)
Q Consensus       203 i~~~~~~--~~~~-~~~~~~gf~  222 (224)
                      ++.+...  ..+. +.+++.||.
T Consensus       275 ~lEiG~~q~~~v~~~l~~~~gf~  297 (1082)
T PLN02672        275 IFNMGGRPGQAVCERLFERRGFR  297 (1082)
T ss_pred             EEEECccHHHHHHHHHHHHCCCC
Confidence            9987643  4566 478888874

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.12  E-value=7.9e-10  Score=88.39  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=88.2

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ++.......++.|||+|||+|.+....+..+..+|++|+.|. |.+.|++.+++        +.+..++.++.+-++++.
T Consensus       169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~--------N~~~~rItVI~GKiEdie  239 (517)
T KOG1500|consen  169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVAS--------NNLADRITVIPGKIEDIE  239 (517)
T ss_pred             HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhc--------CCccceEEEccCcccccc
Confidence            344333457889999999999999988888889999999987 99999999884        356678999999999888


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +      ++++|+||+- .+.+++-.+..++.++.. ++.|+|.|..+-+
T Consensus       240 L------PEk~DviISE-PMG~mL~NERMLEsYl~A-rk~l~P~GkMfPT  281 (517)
T KOG1500|consen  240 L------PEKVDVIISE-PMGYMLVNERMLESYLHA-RKWLKPNGKMFPT  281 (517)
T ss_pred             C------chhccEEEec-cchhhhhhHHHHHHHHHH-HhhcCCCCcccCc
Confidence            6      6899999953 344444455666666554 4999999988754

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.12  E-value=2.2e-10  Score=90.07  Aligned_cols=138  Identities=20%  Similarity=0.254  Sum_probs=93.0

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccc--------------------ccccccCCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH--------------------HQRRKKFSFP  143 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~  143 (224)
                      ++.++||||||.-.+-..-+...+.+++..|+++...+..++++... ..                    .+++..+...
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            56789999999965544333356778999999999999998888754 21                    0111111222


Q ss_pred             ee-EEeccccccccccc-cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE----------------
Q 027388          144 AR-LICGDCYEVHLDKV-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT----------------  205 (224)
Q Consensus       144 v~-~~~~d~~~~~~~~~-~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~----------------  205 (224)
                      |+ ++.+|+...+.-.. ...+.+||+|++.++++.+-...+....+++++.++|||||.|++.                
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~  214 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFP  214 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecc
Confidence            43 77888876442111 0012359999999999988778889999999999999999999974                


Q ss_pred             --eCChHHHHHHhhhcccc
Q 027388          206 --MPDANVIIKKLREEHFC  222 (224)
Q Consensus       206 --~~~~~~~~~~~~~~gf~  222 (224)
                        .-+.+.+.+.++++||.
T Consensus       215 ~l~l~ee~v~~al~~aG~~  233 (256)
T PF01234_consen  215 CLPLNEEFVREALEEAGFD  233 (256)
T ss_dssp             ---B-HHHHHHHHHHTTEE
T ss_pred             cccCCHHHHHHHHHHcCCE
Confidence              22567899999999984

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.10  E-value=1.3e-09  Score=89.47  Aligned_cols=103  Identities=14%  Similarity=0.122  Sum_probs=73.8

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++... .+++|+|+++.+++.|++++..        .++ .+++++++|+.++...    .
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~--------~~l-~~v~~~~~D~~~~~~~----~  237 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAE--------LGL-TNVQFQALDSTQFATA----Q  237 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHH--------cCC-CceEEEEcCHHHHHHh----c
Confidence            356899999999999999988644 6899999999999999998762        233 3589999998765421    2


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      .+.||+|+++-.-       ......+..+...++|+++++++.
T Consensus       238 ~~~~D~Vv~dPPr-------~G~~~~~~~~l~~~~~~~ivyvsc  274 (315)
T PRK03522        238 GEVPDLVLVNPPR-------RGIGKELCDYLSQMAPRFILYSSC  274 (315)
T ss_pred             CCCCeEEEECCCC-------CCccHHHHHHHHHcCCCeEEEEEC
Confidence            3579999987431       112222223334467888777765

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.10  E-value=7.5e-10  Score=82.96  Aligned_cols=115  Identities=19%  Similarity=0.129  Sum_probs=75.2

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ....+.+|||+|||+|..++.++.. ...+|+..|..+ .++.++.++..+..      ....++.+...|+.+......
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~------~~~~~v~v~~L~Wg~~~~~~~  114 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS------LLDGRVSVRPLDWGDELDSDL  114 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------------EEEE--TTS-HHHHH
T ss_pred             hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc------cccccccCcEEEecCcccccc
Confidence            3467899999999999888888766 577999999999 99999988773311      134557788888765221111


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      . ...+||+|++..+++.-    .....+++.+.++|+++|.+++..+
T Consensus       115 ~-~~~~~D~IlasDv~Y~~----~~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen  115 L-EPHSFDVILASDVLYDE----ELFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             H-S-SSBSEEEEES--S-G----GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             c-ccccCCEEEEecccchH----HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            1 35689999999998853    6788999999999999988777755

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02476 O-methyltransferase

Probab=99.08  E-value=2.8e-09  Score=84.93  Aligned_cols=109  Identities=13%  Similarity=0.148  Sum_probs=85.3

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++++|||||+++|..++.++..  ..++++.+|.++...+.|++++.        ..++..+++++.+|+.+......
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~--------~aGl~~~I~li~GdA~e~L~~l~  187 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYE--------LAGVSHKVNVKHGLAAESLKSMI  187 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEEcCHHHHHHHHH
Confidence            357899999999999989888753  34579999999999999999987        45666689999999876421100


Q ss_pred             -cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 -LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 -~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ....+.||+|+....       ......++..+.++|++||++++.
T Consensus       188 ~~~~~~~FD~VFIDa~-------K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        188 QNGEGSSYDFAFVDAD-------KRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             hcccCCCCCEEEECCC-------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence             001368999997653       356788999999999999999975

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.07  E-value=2.1e-09  Score=82.56  Aligned_cols=107  Identities=21%  Similarity=0.226  Sum_probs=85.6

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe-ccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLD  157 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~  157 (224)
                      ...++++|||||++.|.-++.++..-  .++++.+|+++++.+.|++++.        ..++...+..+. +|+.+.-..
T Consensus        56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~--------~ag~~~~i~~~~~gdal~~l~~  127 (219)
T COG4122          56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA--------EAGVDDRIELLLGGDALDVLSR  127 (219)
T ss_pred             HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH--------HcCCcceEEEEecCcHHHHHHh
Confidence            34688999999999998887777542  4689999999999999999998        566777788888 576654321


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                         ...++||+|+....       ......++..+.++|+|||++++.
T Consensus       128 ---~~~~~fDliFIDad-------K~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         128 ---LLDGSFDLVFIDAD-------KADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             ---ccCCCccEEEEeCC-------hhhCHHHHHHHHHHhCCCcEEEEe
Confidence               13689999997653       356788999999999999999985

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.06  E-value=2.2e-09  Score=91.49  Aligned_cols=103  Identities=22%  Similarity=0.280  Sum_probs=74.0

Q ss_pred             CCeEEEecCCCchhHHHHHhhc-----CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           85 GDVVLDLACGKGGDLIKWDKAK-----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~-----~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ++.|||||||+|.+....++..     ..+|++||.++.++...+++++        ..++...|+++++|++++..   
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~--------~n~w~~~V~vi~~d~r~v~l---  255 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVN--------ANGWGDKVTVIHGDMREVEL---  255 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHH--------HTTTTTTEEEEES-TTTSCH---
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHH--------hcCCCCeEEEEeCcccCCCC---
Confidence            5789999999999887665543     4689999999998888877655        34667789999999999886   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                         +..+|+|++=. +..+.+.+ -....|....+.|||||+++
T Consensus       256 ---pekvDIIVSEl-LGsfg~nE-l~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  256 ---PEKVDIIVSEL-LGSFGDNE-LSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             ---SS-EEEEEE----BTTBTTT-SHHHHHHHGGGGEEEEEEEE
T ss_pred             ---CCceeEEEEec-cCCccccc-cCHHHHHHHHhhcCCCCEEe
Confidence               46999999632 23222223 33446788899999999887

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.06  E-value=2.2e-09  Score=77.64  Aligned_cols=116  Identities=16%  Similarity=0.127  Sum_probs=93.8

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      |........+..|||+|.|||.++..++..  ....++.+|.|++++....+...              .++++.+|+.+
T Consensus        40 M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--------------~~~ii~gda~~  105 (194)
T COG3963          40 MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--------------GVNIINGDAFD  105 (194)
T ss_pred             HHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--------------Cccccccchhh
Confidence            444556778899999999999999998875  34679999999999999999876              26788999877


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      +.....+.....||.|+|..-+-.+  +.....++++.+...|.+||.++--+.
T Consensus       106 l~~~l~e~~gq~~D~viS~lPll~~--P~~~~iaile~~~~rl~~gg~lvqftY  157 (194)
T COG3963         106 LRTTLGEHKGQFFDSVISGLPLLNF--PMHRRIAILESLLYRLPAGGPLVQFTY  157 (194)
T ss_pred             HHHHHhhcCCCeeeeEEeccccccC--cHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            6632233356899999998877666  677889999999999999999886543

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=99.05  E-value=5.3e-09  Score=82.97  Aligned_cols=116  Identities=19%  Similarity=0.222  Sum_probs=84.5

Q ss_pred             CCCeEEEecCCCchh----HHHHHhhc------CCeEEEEeCChhHHHHHHHhccC-Ccc-c----------ccc-----
Q 027388           84 RGDVVLDLACGKGGD----LIKWDKAK------IGYYVGIDIAEGSIEDCRTRYNG-DAD-H----------HQR-----  136 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~----~~~l~~~~------~~~~~gvD~s~~~~~~a~~~~~~-~~~-~----------~~~-----  136 (224)
                      ...+|+-+||+||.=    ++.+.+..      ..+++++|+|...++.|+.-.-. ... .          +.+     
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            367999999999982    33333222      35799999999999999877653 111 0          000     


Q ss_pred             ---cccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          137 ---RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       137 ---~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                         ...+...|.|...|+.....     ..+.||+|+|.+|+.|+  ..+.+..++..+...|+|||+|++..
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~-----~~~~fD~IfCRNVLIYF--d~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP-----FLGKFDLIFCRNVLIYF--DEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc-----ccCCCCEEEEcceEEee--CHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence               01122346777777765552     25789999999999998  77889999999999999999999864

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.04  E-value=4.3e-09  Score=79.27  Aligned_cols=139  Identities=24%  Similarity=0.255  Sum_probs=87.3

Q ss_pred             hhhHHHHHHHHHHH-hhcCCCeEEEecCCCchhHHHHHhh--cCC--------eEEEEeCChhHHHHHHHhccCCccccc
Q 027388           67 KKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKA--KIG--------YYVGIDIAEGSIEDCRTRYNGDADHHQ  135 (224)
Q Consensus        67 ~~~~~~~~~~~~~~-~~~~~~~iLDiGcG~G~~~~~l~~~--~~~--------~~~gvD~s~~~~~~a~~~~~~~~~~~~  135 (224)
                      ..+...+...+..+ ...++..+||.-||+|.+.++.+..  ...        .++|+|+++.+++.|++++.       
T Consensus        10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~-------   82 (179)
T PF01170_consen   10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLK-------   82 (179)
T ss_dssp             TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHH-------
T ss_pred             CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHH-------
Confidence            33444444444443 4567889999999999999886543  222        38899999999999999987       


Q ss_pred             ccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCH----HHHHHHHHHHHhhccCCeEEEEEeCChHH
Q 027388          136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE----ARARRALANVSALLRPGGTFIGTMPDANV  211 (224)
Q Consensus       136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~----~~~~~~l~~~~~~lk~gG~li~~~~~~~~  211 (224)
                       ..++...+.+.+.|+.+++.     ..+.+|.|+++.-...-....    .-...+++++.+++++ ..+++.+.+ ..
T Consensus        83 -~ag~~~~i~~~~~D~~~l~~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~-~~  154 (179)
T PF01170_consen   83 -AAGVEDYIDFIQWDARELPL-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN-RE  154 (179)
T ss_dssp             -HTT-CGGEEEEE--GGGGGG-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC-CC
T ss_pred             -hcccCCceEEEecchhhccc-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC-HH
Confidence             34555668999999998884     468999999987655432222    2245677888888888 444444433 33


Q ss_pred             HHHHhhhcc
Q 027388          212 IIKKLREEH  220 (224)
Q Consensus       212 ~~~~~~~~g  220 (224)
                      +.+.+...+
T Consensus       155 ~~~~~~~~~  163 (179)
T PF01170_consen  155 LEKALGLKG  163 (179)
T ss_dssp             HHHHHTSTT
T ss_pred             HHHHhcchh
Confidence            455554433

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.03  E-value=1.1e-08  Score=79.73  Aligned_cols=129  Identities=16%  Similarity=0.147  Sum_probs=88.3

Q ss_pred             HHHHHHHHHH---hhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeE
Q 027388           71 NWIKSVLVQL---YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL  146 (224)
Q Consensus        71 ~~~~~~~~~~---~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~  146 (224)
                      +|++.+++..   ....+..|||+|||+|.++..++.. ..+.+++||.|..++..|.+++.        +..+...+.+
T Consensus       132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~q--------r~~l~g~i~v  203 (328)
T KOG2904|consen  132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQ--------RLKLSGRIEV  203 (328)
T ss_pred             HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHH--------HHhhcCceEE
Confidence            4555554443   2334568999999999999988753 56789999999999999999876        4455666777


Q ss_pred             EeccccccccccccCCCCCeeEEEEccccccc----------------------cCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYS----------------------WSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       147 ~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~----------------------~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      ++.+++...........+.+|+++++-..-.-                      .+..+....++.-..|.|+|||.+.+
T Consensus       204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l  283 (328)
T KOG2904|consen  204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL  283 (328)
T ss_pred             EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence            76655543222211246899999987421110                      11222345577778899999999999


Q ss_pred             EeC
Q 027388          205 TMP  207 (224)
Q Consensus       205 ~~~  207 (224)
                      ++.
T Consensus       284 e~~  286 (328)
T KOG2904|consen  284 ELV  286 (328)
T ss_pred             Eec
Confidence            865

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.00  E-value=2.3e-08  Score=79.00  Aligned_cols=112  Identities=22%  Similarity=0.227  Sum_probs=88.5

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc---CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~---~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..+-+||||+||.|++....+...   ...+...|+|+..++..++...+        .++...++|.++|+.+...  .
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~--------~gL~~i~~f~~~dAfd~~~--l  203 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE--------RGLEDIARFEQGDAFDRDS--L  203 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH--------cCCccceEEEecCCCCHhH--h
Confidence            467799999999999998877642   35789999999999999999884        4566666999999865421  1


Q ss_pred             cCCCCCeeEEEEccccccccCCHHH-HHHHHHHHHhhccCCeEEEEEe
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEAR-ARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~-~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      .......+++++++.++++  +.++ ....+..+.+.+.|||+||.+.
T Consensus       204 ~~l~p~P~l~iVsGL~ElF--~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  204 AALDPAPTLAIVSGLYELF--PDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             hccCCCCCEEEEecchhhC--CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            1124678999999999887  4444 5557999999999999999873

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.00  E-value=3.3e-09  Score=88.31  Aligned_cols=116  Identities=19%  Similarity=0.220  Sum_probs=88.7

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .+++|||+-|=||.++...+..+..++++||+|...+++|++++.-+        ++ ...+.++++|+.+.--. ....
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LN--------g~~~~~~~~i~~Dvf~~l~~-~~~~  287 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELN--------GLDGDRHRFIVGDVFKWLRK-AERR  287 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhc--------CCCccceeeehhhHHHHHHH-HHhc
Confidence            48999999999999999988667779999999999999999998733        33 34478999998765321 1113


Q ss_pred             CCCeeEEEEcccc-----ccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          163 DAPFDICSCQFAM-----HYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       163 ~~~~D~i~~~~~l-----~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ..+||+|++.-.-     ...++...+...++..+.++|+|||.+++++..
T Consensus       288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            4699999975311     011234567889999999999999999988653

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.98  E-value=4.6e-09  Score=83.77  Aligned_cols=87  Identities=20%  Similarity=0.210  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      .++..++......++.+|||||||+|.++..+++. ..+++++|+++.+++.+++++..           ..+++++++|
T Consensus        16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~-----------~~~v~ii~~D   83 (258)
T PRK14896         16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA-----------AGNVEIIEGD   83 (258)
T ss_pred             HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc-----------CCCEEEEEec
Confidence            33444555555667889999999999999999866 46899999999999999988751           2368999999


Q ss_pred             ccccccccccCCCCCeeEEEEccccc
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMH  176 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~  176 (224)
                      +.+++.       ..||.|+++...+
T Consensus        84 ~~~~~~-------~~~d~Vv~NlPy~  102 (258)
T PRK14896         84 ALKVDL-------PEFNKVVSNLPYQ  102 (258)
T ss_pred             cccCCc-------hhceEEEEcCCcc
Confidence            987764       3479999887654

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.98  E-value=5.6e-09  Score=81.05  Aligned_cols=118  Identities=21%  Similarity=0.295  Sum_probs=87.7

Q ss_pred             CeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      ..+||||||.|.++..+++..+ ..++|||+....+..|.+.+...        ++. |+.+++.|+..+...  ..+++
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~--------~l~-Nlri~~~DA~~~l~~--~~~~~  118 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL--------GLK-NLRLLCGDAVEVLDY--LIPDG  118 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc--------CCC-cEEEEcCCHHHHHHh--cCCCC
Confidence            5899999999999999997654 46889999999999999887732        222 799999998775421  11456


Q ss_pred             CeeEEEEccccccccC----CHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHH
Q 027388          165 PFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDANVIIK  214 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~----~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~  214 (224)
                      +.|-|..++.==|.-.    ..=-...++..+.++|+|||.|.+.|-+.+....
T Consensus       119 sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~  172 (227)
T COG0220         119 SLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW  172 (227)
T ss_pred             CeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence            9999998764222100    0001367999999999999999999987654444

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.98  E-value=3e-09  Score=85.44  Aligned_cols=84  Identities=14%  Similarity=0.133  Sum_probs=65.1

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      ...++..+...++.+|||||||+|.++..++.... +++++|+++.|++.+++++.            ..+++++++|+.
T Consensus        31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~------------~~~v~~i~~D~~   97 (272)
T PRK00274         31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA------------EDNLTIIEGDAL   97 (272)
T ss_pred             HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc------------cCceEEEEChhh
Confidence            34455555566788999999999999999986654 99999999999999988765            246899999998


Q ss_pred             ccccccccCCCCCeeEEEEccc
Q 027388          153 EVHLDKVLADDAPFDICSCQFA  174 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~  174 (224)
                      +++..     .-.++.|+++..
T Consensus        98 ~~~~~-----~~~~~~vv~NlP  114 (272)
T PRK00274         98 KVDLS-----ELQPLKVVANLP  114 (272)
T ss_pred             cCCHH-----HcCcceEEEeCC
Confidence            87652     111588887754

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.97  E-value=9.6e-09  Score=86.12  Aligned_cols=112  Identities=13%  Similarity=0.107  Sum_probs=78.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++.. ...++|||+++.+++.|++++..        .++. ++.++++|+.+....    .
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~--------~~~~-~~~~~~~d~~~~~~~----~  297 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQM--------LGLD-NLSFAALDSAKFATA----Q  297 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHH--------cCCC-cEEEEECCHHHHHHh----c
Confidence            35679999999999999988754 46899999999999999999862        2332 689999998764321    1


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHh
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL  216 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~  216 (224)
                      ..+||+|++.-.-..+      ...++..+. .++|+++++++. ++..+.+.+
T Consensus       298 ~~~~D~vi~DPPr~G~------~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl  343 (374)
T TIGR02085       298 MSAPELVLVNPPRRGI------GKELCDYLS-QMAPKFILYSSC-NAQTMAKDI  343 (374)
T ss_pred             CCCCCEEEECCCCCCC------cHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHH
Confidence            2469999987542211      123334443 478999888886 545554443

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.97  E-value=1.6e-08  Score=76.83  Aligned_cols=112  Identities=8%  Similarity=-0.100  Sum_probs=78.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      -.+.++||++||+|.+++.++..+...+++||.++.+++.+++++..        .++..++.++++|+...... ....
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~--------~~~~~~~~~~~~D~~~~l~~-~~~~  118 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLAL--------LKSGEQAEVVRNSALRALKF-LAKK  118 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------hCCcccEEEEehhHHHHHHH-hhcc
Confidence            36789999999999999999877777899999999999999998862        23344688999998553210 1001


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHH--HhhccCCeEEEEEeCC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANV--SALLRPGGTFIGTMPD  208 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~--~~~lk~gG~li~~~~~  208 (224)
                      ...||+|+..-.+..     ......+..+  ..+|+++|++++..+.
T Consensus       119 ~~~~dvv~~DPPy~~-----~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       119 PTFDNVIYLDPPFFN-----GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             CCCceEEEECcCCCC-----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            234788887654432     1223333333  3478999999998654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.97  E-value=7.8e-09  Score=88.42  Aligned_cols=122  Identities=17%  Similarity=0.183  Sum_probs=81.4

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...++.+|||+|||+|.++..++.. ..+++++|+++.+++.|++++..+        ++ .+++++++|+.+... ...
T Consensus       289 ~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~--------~~-~nv~~~~~d~~~~l~-~~~  357 (431)
T TIGR00479       289 ELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELN--------GI-ANVEFLAGTLETVLP-KQP  357 (431)
T ss_pred             ccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHh--------CC-CceEEEeCCHHHHHH-HHH
Confidence            3456689999999999999998754 458999999999999999987632        22 358999999865321 110


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHH---HHHhhhccc
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI---IKKLREEHF  221 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~---~~~~~~~gf  221 (224)
                      .....||+|++.-.=.-+      ...++..+. .++|++.++++. ++..+   ...|.+.||
T Consensus       358 ~~~~~~D~vi~dPPr~G~------~~~~l~~l~-~l~~~~ivyvsc-~p~tlard~~~l~~~gy  413 (431)
T TIGR00479       358 WAGQIPDVLLLDPPRKGC------AAEVLRTII-ELKPERIVYVSC-NPATLARDLEFLCKEGY  413 (431)
T ss_pred             hcCCCCCEEEECcCCCCC------CHHHHHHHH-hcCCCEEEEEcC-CHHHHHHHHHHHHHCCe
Confidence            123579999975431110      134444444 378988877764 44433   334555566

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.95  E-value=1.2e-08  Score=80.23  Aligned_cols=108  Identities=13%  Similarity=0.081  Sum_probs=83.8

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      .++++|||||+++|.-+..++..  ..++++.+|.++...+.|++.+.        ..++..+++++.+++.+.......
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~--------~ag~~~~I~~~~G~a~e~L~~l~~  149 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQ--------KAGVAHKIDFREGPALPVLDQMIE  149 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH--------HCCCCCceEEEeccHHHHHHHHHh
Confidence            57789999999999887777653  34689999999999999999987        456677899999998764211000


Q ss_pred             --CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 --~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ...++||+|+....       ......++..+.++|++||++++.
T Consensus       150 ~~~~~~~fD~iFiDad-------K~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        150 DGKYHGTFDFIFVDAD-------KDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             ccccCCcccEEEecCC-------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence              01368999998653       255678888999999999999975

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.95  E-value=7.3e-09  Score=83.00  Aligned_cols=126  Identities=18%  Similarity=0.264  Sum_probs=85.3

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-CCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+++|||+-|=||.++...+..+..+++.||.|..+++++++++.-        +++. ..+++++.|+.+.-.. . .
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l--------Ng~~~~~~~~~~~Dvf~~l~~-~-~  191 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL--------NGLDLDRHRFIQGDVFKFLKR-L-K  191 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH--------TT-CCTCEEEEES-HHHHHHH-H-H
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCCccceEEEecCHHHHHHH-H-h
Confidence            56899999999999999988766777899999999999999999873        2333 4588999998653211 1 0


Q ss_pred             CCCCeeEEEEcccccc--ccCCHHHHHHHHHHHHhhccCCeEEEEEeCC----hHHHHHHhhh
Q 027388          162 DDAPFDICSCQFAMHY--SWSTEARARRALANVSALLRPGGTFIGTMPD----ANVIIKKLRE  218 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~--~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~----~~~~~~~~~~  218 (224)
                      ..+.||+|++.-...-  -+.-..+...++..+.++|+|||.|++++..    .+.+.+.+.+
T Consensus       192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~  254 (286)
T PF10672_consen  192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAE  254 (286)
T ss_dssp             HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHH
T ss_pred             cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHH
Confidence            2469999997542100  0112357788999999999999998876543    3445555444

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.95  E-value=1.3e-08  Score=79.22  Aligned_cols=99  Identities=18%  Similarity=0.195  Sum_probs=62.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCe-eEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA-RLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~  161 (224)
                      .++.++||+|||+|.++..+++.+..+++++|+++.|+....+.-.              ++ .+...|+......+...
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~--------------~v~~~~~~ni~~~~~~~~~~  139 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE--------------RVKVLERTNIRYVTPADIFP  139 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC--------------CeeEeecCCcccCCHhHcCC
Confidence            3677999999999999999987767789999999988876222211              12 23333444332211111


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE-EEeCC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI-GTMPD  208 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li-~~~~~  208 (224)
                      .-..+|+++++..+            .+..+.+.|++ |.++ +--|.
T Consensus       140 d~~~~DvsfiS~~~------------~l~~i~~~l~~-~~~~~L~KPq  174 (228)
T TIGR00478       140 DFATFDVSFISLIS------------ILPELDLLLNP-NDLTLLFKPQ  174 (228)
T ss_pred             CceeeeEEEeehHh------------HHHHHHHHhCc-CeEEEEcChH
Confidence            22467766655432            46678888888 6544 33443

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.94  E-value=7.3e-09  Score=83.78  Aligned_cols=89  Identities=17%  Similarity=0.327  Sum_probs=68.9

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      ++..++......++.+|||||||+|.++..++.. ..+++++|+++.+++.+++++..        .+...+++++++|+
T Consensus        24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~--------~~~~~~v~ii~~Da   94 (294)
T PTZ00338         24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQN--------SPLASKLEVIEGDA   94 (294)
T ss_pred             HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHh--------cCCCCcEEEEECCH
Confidence            3445555556678889999999999999988754 45899999999999999988762        12234699999999


Q ss_pred             cccccccccCCCCCeeEEEEccccc
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMH  176 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~  176 (224)
                      .+.+.       ..||+|+++...+
T Consensus        95 l~~~~-------~~~d~VvaNlPY~  112 (294)
T PTZ00338         95 LKTEF-------PYFDVCVANVPYQ  112 (294)
T ss_pred             hhhcc-------cccCEEEecCCcc
Confidence            87654       4689999876544

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.94  E-value=2.9e-08  Score=80.90  Aligned_cols=84  Identities=18%  Similarity=0.200  Sum_probs=58.4

Q ss_pred             CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccc-cCCCCeeEEec-ccccccccccc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK-KFSFPARLICG-DCYEVHLDKVL  160 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~v~~~~~-d~~~~~~~~~~  160 (224)
                      .+.++||||||+|.+...++.. ...+++|+|+++.+++.|++++..        . .+..++.+.+. +...+.. ...
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~--------Np~l~~~I~~~~~~~~~~i~~-~i~  184 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISA--------NPGLNGAIRLRLQKDSKAIFK-GII  184 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh--------ccCCcCcEEEEEccchhhhhh-ccc
Confidence            4679999999999776666543 346899999999999999999873        3 34556776543 3322211 111


Q ss_pred             CCCCCeeEEEEccccc
Q 027388          161 ADDAPFDICSCQFAMH  176 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~  176 (224)
                      ...+.||+|+|+--++
T Consensus       185 ~~~~~fDlivcNPPf~  200 (321)
T PRK11727        185 HKNERFDATLCNPPFH  200 (321)
T ss_pred             ccCCceEEEEeCCCCc
Confidence            1356899999997655

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.91  E-value=1.5e-08  Score=76.42  Aligned_cols=114  Identities=19%  Similarity=0.151  Sum_probs=80.2

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      -.+.++||+-||+|.++++.+..+...++.||.+...+...++++..        -+....+..+.+|+...-... ...
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~--------l~~~~~~~v~~~d~~~~l~~~-~~~  111 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEK--------LGLEDKIRVIKGDAFKFLLKL-AKK  111 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH--------HT-GGGEEEEESSHHHHHHHH-HHC
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHH--------hCCCcceeeeccCHHHHHHhh-ccc
Confidence            47899999999999999998888888999999999999999999872        233445788888865432110 003


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHH--hhccCCeEEEEEeCCh
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPDA  209 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~--~~lk~gG~li~~~~~~  209 (224)
                      ...||+|++.-....-    .....++..+.  .+|+++|.+++.+...
T Consensus       112 ~~~fDiIflDPPY~~~----~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  112 GEKFDIIFLDPPYAKG----LYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             TS-EEEEEE--STTSC----HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CCCceEEEECCCcccc----hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            5899999998765432    12466777776  7999999999987543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.90  E-value=3.9e-08  Score=78.20  Aligned_cols=85  Identities=22%  Similarity=0.188  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      .+..++......++.+|||||||+|.++..++... ..++++|+++.+++.++.++..           ..++.++++|+
T Consensus        17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~-----------~~~v~v~~~D~   84 (253)
T TIGR00755        17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL-----------YERLEVIEGDA   84 (253)
T ss_pred             HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc-----------CCcEEEEECch
Confidence            34445555555678899999999999999988655 4799999999999999887641           34589999999


Q ss_pred             cccccccccCCCCCee---EEEEcccc
Q 027388          152 YEVHLDKVLADDAPFD---ICSCQFAM  175 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D---~i~~~~~l  175 (224)
                      .+.+..       .+|   +|+++..+
T Consensus        85 ~~~~~~-------~~d~~~~vvsNlPy  104 (253)
T TIGR00755        85 LKVDLP-------DFPKQLKVVSNLPY  104 (253)
T ss_pred             hcCChh-------HcCCcceEEEcCCh
Confidence            887652       455   77776554

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.84  E-value=6.3e-09  Score=81.71  Aligned_cols=99  Identities=26%  Similarity=0.426  Sum_probs=80.3

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ..+..++|+|||.|.++..   .....++|.|++...+.-+++.-.               .....+|+.+++.     .
T Consensus        44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~~---------------~~~~~ad~l~~p~-----~  100 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSGG---------------DNVCRADALKLPF-----R  100 (293)
T ss_pred             CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCCC---------------ceeehhhhhcCCC-----C
Confidence            4578899999999976643   244578899999988888865422               2678899988887     6


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..+||.+++..++||+ ++......+++++.+.++|||...+.
T Consensus       101 ~~s~d~~lsiavihhl-sT~~RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen  101 EESFDAALSIAVIHHL-STRERRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             CCccccchhhhhhhhh-hhHHHHHHHHHHHHHHhcCCCceEEE
Confidence            8999999999999997 56677889999999999999986654

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.82  E-value=2.4e-08  Score=80.85  Aligned_cols=95  Identities=21%  Similarity=0.238  Sum_probs=81.3

Q ss_pred             CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhc-cCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY-NGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      ...+|+|.|.|+.+..++. .+..+-++++....+..+...+ .              .|..+.+|+... .       .
T Consensus       179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~~--------------gV~~v~gdmfq~-~-------P  235 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLAP--------------GVEHVAGDMFQD-T-------P  235 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhcC--------------Ccceeccccccc-C-------C
Confidence            7899999999999999987 6668899999999888887765 3              278888887654 3       2


Q ss_pred             CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .-|+|++.+++||+  +.++..++|++|+..|+|||.+++.
T Consensus       236 ~~daI~mkWiLhdw--tDedcvkiLknC~~sL~~~GkIiv~  274 (342)
T KOG3178|consen  236 KGDAIWMKWILHDW--TDEDCVKILKNCKKSLPPGGKIIVV  274 (342)
T ss_pred             CcCeEEEEeecccC--ChHHHHHHHHHHHHhCCCCCEEEEE
Confidence            45699999999999  8899999999999999999998875

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=2.4e-07  Score=68.17  Aligned_cols=123  Identities=16%  Similarity=0.248  Sum_probs=87.3

Q ss_pred             CCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ....+||||||+|..+..++..  ....+.++|+++.+++..++.+..+          ...+..+++|+..--      
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----------~~~~~~V~tdl~~~l------  106 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----------RVHIDVVRTDLLSGL------  106 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----------CCccceeehhHHhhh------
Confidence            4788999999999988888764  3446779999999998877766521          333677888875443      


Q ss_pred             CCCCeeEEEEcccc----------c-----cc--cCCHHHHHHHHHHHHhhccCCeEEEEEeCC---hHHHHHHhhhccc
Q 027388          162 DDAPFDICSCQFAM----------H-----YS--WSTEARARRALANVSALLRPGGTFIGTMPD---ANVIIKKLREEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l----------~-----~~--~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---~~~~~~~~~~~gf  221 (224)
                      ..+++|+++.+-..          +     |.  .++..-...++..+-.+|.|.|++++..-.   +..+.+++++.||
T Consensus       107 ~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~  186 (209)
T KOG3191|consen  107 RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGY  186 (209)
T ss_pred             ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhccc
Confidence            35899999866411          0     10  112333567888888999999999987553   4567778888887


Q ss_pred             c
Q 027388          222 C  222 (224)
Q Consensus       222 ~  222 (224)
                      .
T Consensus       187 ~  187 (209)
T KOG3191|consen  187 G  187 (209)
T ss_pred             c
Confidence            4

>PLN02823 spermine synthase

Probab=98.81  E-value=5e-08  Score=80.22  Aligned_cols=115  Identities=18%  Similarity=0.191  Sum_probs=81.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+++||.||+|.|..+..+++. ...+++.||+++.+++.|++.+....     ..--+.+++++.+|.......    
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~-----~~~~dprv~v~~~Da~~~L~~----  172 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNR-----EAFCDKRLELIINDARAELEK----  172 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccc-----ccccCCceEEEEChhHHHHhh----
Confidence            35689999999999999888764 35689999999999999999876210     001246789999998775421    


Q ss_pred             CCCCeeEEEEccccccccCCH--HHHHHHHH-HHHhhccCCeEEEEEe
Q 027388          162 DDAPFDICSCQFAMHYSWSTE--ARARRALA-NVSALLRPGGTFIGTM  206 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~--~~~~~~l~-~~~~~lk~gG~li~~~  206 (224)
                      ..++||+|++...-..-..+.  ---..+++ .+.+.|+|||++++..
T Consensus       173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            357899999863210000000  01246777 8999999999998763

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.77  E-value=5e-07  Score=73.74  Aligned_cols=114  Identities=15%  Similarity=0.126  Sum_probs=80.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-CCeeEEeccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVH  155 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~  155 (224)
                      ..++..|+|+|||+|+-+..++..     ....|+++|+|..+++.+..++..        ...+ ..+.-+++|+.+..
T Consensus        74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~--------~~~p~l~v~~l~gdy~~~l  145 (319)
T TIGR03439        74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL--------GNFSHVRCAGLLGTYDDGL  145 (319)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh--------ccCCCeEEEEEEecHHHHH
Confidence            356678999999999987766543     235799999999999999998861        1212 23445788875431


Q ss_pred             c--ccccCCCCCeeEEEEcc-ccccccCCHHHHHHHHHHHHh-hccCCeEEEEEe
Q 027388          156 L--DKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSA-LLRPGGTFIGTM  206 (224)
Q Consensus       156 ~--~~~~~~~~~~D~i~~~~-~l~~~~~~~~~~~~~l~~~~~-~lk~gG~li~~~  206 (224)
                      .  .... ......+++..+ ++.++  ...+...+|+++++ .|+|||.|++..
T Consensus       146 ~~l~~~~-~~~~~r~~~flGSsiGNf--~~~ea~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       146 AWLKRPE-NRSRPTTILWLGSSIGNF--SRPEAAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             hhccccc-ccCCccEEEEeCccccCC--CHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence            1  0000 123456776655 77777  67889999999999 999999999863

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK04148 hypothetical protein; Provisional

Probab=98.75  E-value=3.2e-07  Score=65.03  Aligned_cols=93  Identities=12%  Similarity=0.035  Sum_probs=68.4

Q ss_pred             cCCCeEEEecCCCch-hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~-~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.++||||||+|. .+..+. ....+|+++|+++..++.+++..                +.++.+|+.+-...    
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~~----------------~~~v~dDlf~p~~~----   73 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKLG----------------LNAFVDDLFNPNLE----   73 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhC----------------CeEEECcCCCCCHH----
Confidence            456889999999996 666665 44569999999999999887663                57889998765442    


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .-..+|+|.+...       ..++...+.++.+.+.  .-+++.
T Consensus        74 ~y~~a~liysirp-------p~el~~~~~~la~~~~--~~~~i~  108 (134)
T PRK04148         74 IYKNAKLIYSIRP-------PRDLQPFILELAKKIN--VPLIIK  108 (134)
T ss_pred             HHhcCCEEEEeCC-------CHHHHHHHHHHHHHcC--CCEEEE
Confidence            2478999998763       3667777777776554  345544

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.74  E-value=1.1e-07  Score=76.15  Aligned_cols=112  Identities=18%  Similarity=0.153  Sum_probs=83.7

Q ss_pred             CCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           85 GDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      +++||-||.|.|..+..+++.. ..+++.||+++..++.+++.+......     ..+.+++++..|..++-..    ..
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~-----~~dpRv~i~i~Dg~~~v~~----~~  147 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG-----ADDPRVEIIIDDGVEFLRD----CE  147 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc-----cCCCceEEEeccHHHHHHh----CC
Confidence            3799999999999999998764 568999999999999999998732110     1157789999998776432    23


Q ss_pred             CCeeEEEEccccccccCCHH--HHHHHHHHHHhhccCCeEEEEEeC
Q 027388          164 APFDICSCQFAMHYSWSTEA--RARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~--~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ..||+|++...=. . .+.+  .-..+++.+.+.|+++|+++..+.
T Consensus       148 ~~fDvIi~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~  191 (282)
T COG0421         148 EKFDVIIVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQAG  191 (282)
T ss_pred             CcCCEEEEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence            4899999765321 0 0000  126799999999999999998843

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.73  E-value=4.3e-08  Score=75.12  Aligned_cols=126  Identities=20%  Similarity=0.190  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCccccccccc-CCCCeeEEe
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLIC  148 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~v~~~~  148 (224)
                      ..+..++....+.++..++|||||.|......+.. ...+.+|||+.+...+.|+......... .+..+ ....+.+.+
T Consensus        29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~-~~~~g~~~~~v~l~~  107 (205)
T PF08123_consen   29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR-MKHYGKRPGKVELIH  107 (205)
T ss_dssp             HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH-HHHCTB---EEEEEC
T ss_pred             HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH-HHHhhcccccceeec
Confidence            34555666666778999999999999988876643 5566999999999888877644311000 00001 123477888


Q ss_pred             ccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       149 ~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      +|+.+.+....  .-...|+|+++....     .++....|.++...||+|..+|-
T Consensus       108 gdfl~~~~~~~--~~s~AdvVf~Nn~~F-----~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  108 GDFLDPDFVKD--IWSDADVVFVNNTCF-----DPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             S-TTTHHHHHH--HGHC-SEEEE--TTT------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             cCccccHhHhh--hhcCCCEEEEecccc-----CHHHHHHHHHHHhcCCCCCEEEE
Confidence            99876542111  014689999987653     25677788888899999877664

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=1.8e-08  Score=71.29  Aligned_cols=79  Identities=23%  Similarity=0.311  Sum_probs=64.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      -.+++++|+|||.|.+...........++|+|+.+.+++.+.+++.          ....++.++++|+.+...     .
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNae----------EfEvqidlLqcdildle~-----~  111 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAE----------EFEVQIDLLQCDILDLEL-----K  111 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchH----------Hhhhhhheeeeeccchhc-----c
Confidence            4789999999999998876665567789999999999999999977          234456899999987765     4


Q ss_pred             CCCeeEEEEccccc
Q 027388          163 DAPFDICSCQFAMH  176 (224)
Q Consensus       163 ~~~~D~i~~~~~l~  176 (224)
                      .+-||.++.+--+.
T Consensus       112 ~g~fDtaviNppFG  125 (185)
T KOG3420|consen  112 GGIFDTAVINPPFG  125 (185)
T ss_pred             CCeEeeEEecCCCC
Confidence            68899999876543

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.71  E-value=2.3e-08  Score=84.42  Aligned_cols=119  Identities=17%  Similarity=0.174  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHhh----cCCCeEEEecCCCchhHHHHHhhcCCeEE--EEeCChhHHHHHHHhccCCcccccccccCCC
Q 027388           69 LNNWIKSVLVQLYA----RRGDVVLDLACGKGGDLIKWDKAKIGYYV--GIDIAEGSIEDCRTRYNGDADHHQRRKKFSF  142 (224)
Q Consensus        69 ~~~~~~~~~~~~~~----~~~~~iLDiGcG~G~~~~~l~~~~~~~~~--gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  142 (224)
                      ...|+..+...+..    ..-+++||+|||+|.++..++..+...+.  .-|..+..++.|.++.-            ..
T Consensus        98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGv------------pa  165 (506)
T PF03141_consen   98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGV------------PA  165 (506)
T ss_pred             HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCc------------ch
Confidence            44555544443332    22357999999999999999866543322  23455556666665522            11


Q ss_pred             CeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       143 ~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                        .+-......+++     +.+.||+|.|..++...  . ..-.-+|-++.|+|+|||+++++.|..
T Consensus       166 --~~~~~~s~rLPf-----p~~~fDmvHcsrc~i~W--~-~~~g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  166 --MIGVLGSQRLPF-----PSNAFDMVHCSRCLIPW--H-PNDGFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             --hhhhhccccccC-----Cccchhhhhcccccccc--h-hcccceeehhhhhhccCceEEecCCcc
Confidence              111112345666     78999999998876543  1 122458899999999999999997753

; GO: 0008168 methyltransferase activity

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.70  E-value=2.2e-06  Score=68.11  Aligned_cols=132  Identities=18%  Similarity=0.143  Sum_probs=89.9

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccc-------------ccc-------------
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH-------------QRR-------------  137 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~-------------~~~-------------  137 (224)
                      .+.+||=-|||.|+++..++..++ .+.|.|.|-.|+-..+-.+......+             ...             
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv  134 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV  134 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence            457899999999999999987765 89999999999877665544211000             000             


Q ss_pred             -----ccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE-------
Q 027388          138 -----KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT-------  205 (224)
Q Consensus       138 -----~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~-------  205 (224)
                           .....++....+|+.++-....  ..+.||+|+..+.+    ++..+...+|..+.++|||||++|=-       
T Consensus       135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~--~~~~~d~VvT~FFI----DTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~  208 (270)
T PF07942_consen  135 DPSSELPSPSNLSMCAGDFLEVYGPDE--NKGSFDVVVTCFFI----DTAENIIEYIETIEHLLKPGGYWINFGPLLYHF  208 (270)
T ss_pred             CcccccCCCCceeEecCccEEecCCcc--cCCcccEEEEEEEe----echHHHHHHHHHHHHHhccCCEEEecCCccccC
Confidence                 0011234455566555432100  13799999988655    45688999999999999999988732       


Q ss_pred             -----------eCChHHHHHHhhhcccc
Q 027388          206 -----------MPDANVIIKKLREEHFC  222 (224)
Q Consensus       206 -----------~~~~~~~~~~~~~~gf~  222 (224)
                                 ....+.|.......||.
T Consensus       209 ~~~~~~~~~sveLs~eEi~~l~~~~GF~  236 (270)
T PF07942_consen  209 EPMSIPNEMSVELSLEEIKELIEKLGFE  236 (270)
T ss_pred             CCCCCCCCcccCCCHHHHHHHHHHCCCE
Confidence                       11346788888888875

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.70  E-value=1.4e-07  Score=77.28  Aligned_cols=145  Identities=23%  Similarity=0.310  Sum_probs=86.6

Q ss_pred             CceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--------cCCeEEEEeCChhHHHHHHHhccCCccc
Q 027388           62 PIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------KIGYYVGIDIAEGSIEDCRTRYNGDADH  133 (224)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--------~~~~~~gvD~s~~~~~~a~~~~~~~~~~  133 (224)
                      .++++..+..++..++   ...++.+|+|.+||+|.++..+...        ....++|+|+++.++..|+.++.-.   
T Consensus        27 ~~~TP~~i~~l~~~~~---~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~---  100 (311)
T PF02384_consen   27 QFYTPREIVDLMVKLL---NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH---  100 (311)
T ss_dssp             GC---HHHHHHHHHHH---TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT---
T ss_pred             eeehHHHHHHHHHhhh---hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh---
Confidence            4556666655555444   4466778999999999999887652        4567999999999999998775411   


Q ss_pred             ccccccCCC-CeeEEeccccccccccccCCCCCeeEEEEccccccc-c----------------CCHHHHHHHHHHHHhh
Q 027388          134 HQRRKKFSF-PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS-W----------------STEARARRALANVSAL  195 (224)
Q Consensus       134 ~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~-~----------------~~~~~~~~~l~~~~~~  195 (224)
                           +... ...+.++|....+...   ....||+|+++-.+... +                .....-..++..+.+.
T Consensus       101 -----~~~~~~~~i~~~d~l~~~~~~---~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~  172 (311)
T PF02384_consen  101 -----GIDNSNINIIQGDSLENDKFI---KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSL  172 (311)
T ss_dssp             -----THHCBGCEEEES-TTTSHSCT---ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHT
T ss_pred             -----ccccccccccccccccccccc---cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhh
Confidence                 1111 1347777765444310   24799999987543322 0                0111224588999999


Q ss_pred             ccCCeEEEEEeCCh--------HHHHHHhhhcc
Q 027388          196 LRPGGTFIGTMPDA--------NVIIKKLREEH  220 (224)
Q Consensus       196 lk~gG~li~~~~~~--------~~~~~~~~~~g  220 (224)
                      |++||.+.+.+|+.        ..+++.|.+.+
T Consensus       173 Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~  205 (311)
T PF02384_consen  173 LKPGGRAAIILPNGFLFSSSSEKKIRKYLLENG  205 (311)
T ss_dssp             EEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred             cccccceeEEecchhhhccchHHHHHHHHHhhc
Confidence            99999987776641        34555555544

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.69  E-value=1.6e-07  Score=71.58  Aligned_cols=100  Identities=23%  Similarity=0.299  Sum_probs=71.8

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++.+|+|+.||-|.+++.++.. ....|+++|+++..++.+++++.        ...+...+..+++|..++..    
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~--------lNkv~~~i~~~~~D~~~~~~----  166 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIR--------LNKVENRIEVINGDAREFLP----  166 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHH--------HTT-TTTEEEEES-GGG-------
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHH--------HcCCCCeEEEEcCCHHHhcC----
Confidence            467899999999999999999863 55679999999999999999987        34666678999999887753    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                        ...+|.|++...-.        ...++..+..++++||++.
T Consensus       167 --~~~~drvim~lp~~--------~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  167 --EGKFDRVIMNLPES--------SLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             --TT-EEEEEE--TSS--------GGGGHHHHHHHEEEEEEEE
T ss_pred             --ccccCEEEECChHH--------HHHHHHHHHHHhcCCcEEE
Confidence              58999999876422        2357788899999999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.69  E-value=1.1e-07  Score=72.77  Aligned_cols=129  Identities=22%  Similarity=0.297  Sum_probs=94.2

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .+.+.+|||.+.|-|..++..++.+...|+.++.+++.++.|+-+--+.       ......++++.+|+.++--.   +
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr-------~l~~~~i~iilGD~~e~V~~---~  201 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSR-------ELFEIAIKIILGDAYEVVKD---F  201 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCc-------cccccccEEecccHHHHHhc---C
Confidence            4578999999999999999888777779999999999999987553221       11123578999998764321   1


Q ss_pred             CCCCeeEEEEccc-cccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh----------HHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQFA-MHYSWSTEARARRALANVSALLRPGGTFIGTMPDA----------NVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~~~-l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~----------~~~~~~~~~~gf~  222 (224)
                      .+.+||+|+-.-. +.+  ..+-.-..+.++++|+|+|||.++=.+.++          ..+.+.|++.||.
T Consensus       202 ~D~sfDaIiHDPPRfS~--AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~  271 (287)
T COG2521         202 DDESFDAIIHDPPRFSL--AGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFE  271 (287)
T ss_pred             CccccceEeeCCCccch--hhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCce
Confidence            5688999985421 111  123345789999999999999988665443          4788899999985

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.67  E-value=1.7e-07  Score=70.67  Aligned_cols=97  Identities=20%  Similarity=0.188  Sum_probs=74.5

Q ss_pred             eEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCC
Q 027388           87 VVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP  165 (224)
Q Consensus        87 ~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  165 (224)
                      +++|||+|.|.-++.++-. ...+++.+|.+..-+...+......        ++. |++++++.+++ ..     ....
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L--------~L~-nv~v~~~R~E~-~~-----~~~~  115 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL--------GLS-NVEVINGRAEE-PE-----YRES  115 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH--------T-S-SEEEEES-HHH-TT-----TTT-
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh--------CCC-CEEEEEeeecc-cc-----cCCC
Confidence            8999999999999988754 3457999999999888877776532        222 59999999987 22     4689


Q ss_pred             eeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       166 ~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ||+|++..+-        ....++.-+...+++||.+++.-
T Consensus       116 fd~v~aRAv~--------~l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  116 FDVVTARAVA--------PLDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             EEEEEEESSS--------SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ccEEEeehhc--------CHHHHHHHHHHhcCCCCEEEEEc
Confidence            9999988764        24577888899999999888764

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.67  E-value=3.3e-07  Score=69.70  Aligned_cols=128  Identities=17%  Similarity=0.224  Sum_probs=91.8

Q ss_pred             hhhhHHHHHHHHHHHh-hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCe
Q 027388           66 LKKLNNWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA  144 (224)
Q Consensus        66 ~~~~~~~~~~~~~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v  144 (224)
                      -+....|++....... .....++|||||=+..+....  ...-.|+.||+.+       +                 .-
T Consensus        32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns-------~-----------------~~   85 (219)
T PF11968_consen   32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNS-------Q-----------------HP   85 (219)
T ss_pred             hHHHHHHhhhhccccccccccceEEeecccCCCCcccc--cCceeeEEeecCC-------C-----------------CC
Confidence            3566677666644321 123479999999866555432  2223599999876       0                 13


Q ss_pred             eEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeE-----EEEEeCC----------h
Q 027388          145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT-----FIGTMPD----------A  209 (224)
Q Consensus       145 ~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~-----li~~~~~----------~  209 (224)
                      .+.++|+.+.+++..  +.+.||+|.++.||.++ ++....-..++++.+.|+++|.     |++..|.          .
T Consensus        86 ~I~qqDFm~rplp~~--~~e~FdvIs~SLVLNfV-P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~  162 (219)
T PF11968_consen   86 GILQQDFMERPLPKN--ESEKFDVISLSLVLNFV-PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTE  162 (219)
T ss_pred             CceeeccccCCCCCC--cccceeEEEEEEEEeeC-CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCH
Confidence            567888888766322  46899999999999998 3456788899999999999999     8888763          4


Q ss_pred             HHHHHHhhhcccc
Q 027388          210 NVIIKKLREEHFC  222 (224)
Q Consensus       210 ~~~~~~~~~~gf~  222 (224)
                      ..+...+...||.
T Consensus       163 ~~l~~im~~LGf~  175 (219)
T PF11968_consen  163 ERLREIMESLGFT  175 (219)
T ss_pred             HHHHHHHHhCCcE
Confidence            5677788888875

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.66  E-value=1.5e-07  Score=74.43  Aligned_cols=115  Identities=16%  Similarity=0.150  Sum_probs=80.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+++||=||.|.|..+..+++.. ..+++.||+++..++.|++.+....     ...-+.+++++.+|...+-..    
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~-----~~~~d~r~~i~~~Dg~~~l~~----  145 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFS-----EGLDDPRVRIIIGDGRKFLKE----  145 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHH-----TTGGSTTEEEEESTHHHHHHT----
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhc-----cccCCCceEEEEhhhHHHHHh----
Confidence            468999999999999999987654 5689999999999999999875210     001256799999998765432    


Q ss_pred             CCC-CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          162 DDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       162 ~~~-~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ..+ .||+|+....-.......---..+++.+++.|+|||++++..
T Consensus       146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  146 TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            234 899999754321100000012579999999999999999874

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.66  E-value=3.6e-07  Score=78.41  Aligned_cols=114  Identities=18%  Similarity=0.199  Sum_probs=82.6

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      .+.++.+|||++||.|.-+..++..  +.+.++++|+++..++.+++++..        .++ .++.+...|...+... 
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r--------~G~-~nv~v~~~D~~~~~~~-  179 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR--------CGV-SNVALTHFDGRVFGAA-  179 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH--------cCC-CeEEEEeCchhhhhhh-
Confidence            4568899999999999999988764  346899999999999999999873        222 2477788887654321 


Q ss_pred             ccCCCCCeeEEE----Ecc--ccccc------cCCH-------HHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          159 VLADDAPFDICS----CQF--AMHYS------WSTE-------ARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       159 ~~~~~~~~D~i~----~~~--~l~~~------~~~~-------~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                         ....||.|+    |++  ++..-      + +.       .-+..+|....+.|||||+|+.+|..
T Consensus       180 ---~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~-s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        180 ---LPETFDAILLDAPCSGEGTVRKDPDALKNW-SPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             ---chhhcCeEEEcCCCCCCcccccCHHHhhhC-CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence               246799999    432  11110      0 11       12467899999999999999998774

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.65  E-value=1.8e-07  Score=73.02  Aligned_cols=86  Identities=22%  Similarity=0.322  Sum_probs=69.4

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..++.....++++.|||+|.|||.++..+++ ...+|+++|+++.|+....+++.+        .+.....+++++|+.
T Consensus        47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe-~~kkVvA~E~Dprmvael~krv~g--------tp~~~kLqV~~gD~l  117 (315)
T KOG0820|consen   47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLE-AGKKVVAVEIDPRMVAELEKRVQG--------TPKSGKLQVLHGDFL  117 (315)
T ss_pred             HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHH-hcCeEEEEecCcHHHHHHHHHhcC--------CCccceeeEEecccc
Confidence            34455556678899999999999999999985 445999999999999999999873        233456899999998


Q ss_pred             ccccccccCCCCCeeEEEEccc
Q 027388          153 EVHLDKVLADDAPFDICSCQFA  174 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~  174 (224)
                      ..++       ..||.++++..
T Consensus       118 K~d~-------P~fd~cVsNlP  132 (315)
T KOG0820|consen  118 KTDL-------PRFDGCVSNLP  132 (315)
T ss_pred             cCCC-------cccceeeccCC
Confidence            7764       57999998653

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.62  E-value=3.1e-07  Score=79.88  Aligned_cols=125  Identities=12%  Similarity=0.149  Sum_probs=87.1

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .+..+||||||.|.++..++...+ ..++|+|++...+..+.+.....        ++ .|+.+++.|+..+..   ..+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~--------~l-~N~~~~~~~~~~~~~---~~~  414 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ--------NI-TNFLLFPNNLDLILN---DLP  414 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc--------CC-CeEEEEcCCHHHHHH---hcC
Confidence            467899999999999999987644 56889999999888887776522        22 357788777643321   115


Q ss_pred             CCCeeEEEEccccccccC----CHHHHHHHHHHHHhhccCCeEEEEEeCChHHH---HHHhhhcc
Q 027388          163 DAPFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDANVI---IKKLREEH  220 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~----~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~---~~~~~~~g  220 (224)
                      ++++|.|+.++.==|.-.    ..=-...++..+.++|+|||.+.+.|-+.+..   ++.+.+.+
T Consensus       415 ~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~  479 (506)
T PRK01544        415 NNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNG  479 (506)
T ss_pred             cccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCC
Confidence            688999998764222100    00013679999999999999999999876544   44444443

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.60  E-value=1.9e-07  Score=75.32  Aligned_cols=89  Identities=16%  Similarity=0.122  Sum_probs=66.9

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      +..++..+.+.++..+||++||.|+++..++...  .++|+|+|.++.+++.+++++.          . ..++.++++|
T Consensus         8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~----------~-~~ri~~i~~~   76 (296)
T PRK00050          8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK----------P-FGRFTLVHGN   76 (296)
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc----------c-CCcEEEEeCC
Confidence            3445555556678899999999999999998764  3789999999999999998876          1 3468999999


Q ss_pred             ccccccccccCCCCCeeEEEEcc
Q 027388          151 CYEVHLDKVLADDAPFDICSCQF  173 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~  173 (224)
                      +.++...... ...++|.|++..
T Consensus        77 f~~l~~~l~~-~~~~vDgIl~DL   98 (296)
T PRK00050         77 FSNLKEVLAE-GLGKVDGILLDL   98 (296)
T ss_pred             HHHHHHHHHc-CCCccCEEEECC
Confidence            8876421100 112799998653

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.60  E-value=1.1e-06  Score=73.55  Aligned_cols=111  Identities=13%  Similarity=0.135  Sum_probs=72.4

Q ss_pred             CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC---
Q 027388           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA---  161 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---  161 (224)
                      +.++||++||+|.++..++. ...++++||.++.+++.+++++..        .++. ++.++++|+.+.... ...   
T Consensus       207 ~~~vLDl~~G~G~~sl~la~-~~~~v~~vE~~~~ai~~a~~N~~~--------~~~~-~v~~~~~d~~~~l~~-~~~~~~  275 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALAR-NFRRVLATEISKPSVAAAQYNIAA--------NGID-NVQIIRMSAEEFTQA-MNGVRE  275 (362)
T ss_pred             CCeEEEEeccccHHHHHHHh-hCCEEEEEECCHHHHHHHHHHHHH--------hCCC-cEEEEECCHHHHHHH-Hhhccc
Confidence            35799999999999998764 456899999999999999999762        2332 589999998764210 000   


Q ss_pred             ---------CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHh
Q 027388          162 ---------DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL  216 (224)
Q Consensus       162 ---------~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~  216 (224)
                               ....||+|+..-.-.-+      ...++..+.+   ++++++++. |+..+.+.+
T Consensus       276 ~~~~~~~~~~~~~~D~v~lDPPR~G~------~~~~l~~l~~---~~~ivyvSC-~p~tlarDl  329 (362)
T PRK05031        276 FNRLKGIDLKSYNFSTIFVDPPRAGL------DDETLKLVQA---YERILYISC-NPETLCENL  329 (362)
T ss_pred             ccccccccccCCCCCEEEECCCCCCC------cHHHHHHHHc---cCCEEEEEe-CHHHHHHHH
Confidence                     01258999876431111      1233344433   677777776 445454433

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.59  E-value=1.2e-06  Score=79.14  Aligned_cols=117  Identities=16%  Similarity=0.142  Sum_probs=83.8

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-------------------------------------------cCCeEEEEeCChhH
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-------------------------------------------KIGYYVGIDIAEGS  119 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-------------------------------------------~~~~~~gvD~s~~~  119 (224)
                      .++..++|.+||+|.++++.+..                                           ....++|+|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            45789999999999999886541                                           01258999999999


Q ss_pred             HHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhcc--
Q 027388          120 IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR--  197 (224)
Q Consensus       120 ~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk--  197 (224)
                      ++.|++++.        ..++...+.+.++|+.+++...   ..++||+|+++-....-.....+...+...+-+.++  
T Consensus       269 v~~A~~N~~--------~~g~~~~i~~~~~D~~~~~~~~---~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~  337 (702)
T PRK11783        269 IQAARKNAR--------RAGVAELITFEVKDVADLKNPL---PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ  337 (702)
T ss_pred             HHHHHHHHH--------HcCCCcceEEEeCChhhccccc---ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence            999999987        3455666899999998775411   235799999997654333333455555444444444  


Q ss_pred             -CCeEEEEEeCChH
Q 027388          198 -PGGTFIGTMPDAN  210 (224)
Q Consensus       198 -~gG~li~~~~~~~  210 (224)
                       +|+.+++-+++..
T Consensus       338 ~~g~~~~llt~~~~  351 (702)
T PRK11783        338 FGGWNAALFSSSPE  351 (702)
T ss_pred             CCCCeEEEEeCCHH
Confidence             8888888887754

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.59  E-value=1.8e-06  Score=71.24  Aligned_cols=127  Identities=17%  Similarity=0.138  Sum_probs=92.6

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcC---------------------------------C-------eEEEEeCChhHH
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------G-------YYVGIDIAEGSI  120 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~---------------------------------~-------~~~gvD~s~~~~  120 (224)
                      ...++..++|.=||+|.+.++.+....                                 .       .++|+|+++.++
T Consensus       188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i  267 (381)
T COG0116         188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI  267 (381)
T ss_pred             CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence            445667899999999999998764321                                 1       377999999999


Q ss_pred             HHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHH----HHHHHHHHHHhhc
Q 027388          121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA----RARRALANVSALL  196 (224)
Q Consensus       121 ~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~----~~~~~l~~~~~~l  196 (224)
                      +.|+.++.        ..++...|.|.++|+..+..     +.+.+|+|+|+-....-+....    -...+.+.+++.+
T Consensus       268 ~~Ak~NA~--------~AGv~d~I~f~~~d~~~l~~-----~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~  334 (381)
T COG0116         268 EGAKANAR--------AAGVGDLIEFKQADATDLKE-----PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLL  334 (381)
T ss_pred             HHHHHHHH--------hcCCCceEEEEEcchhhCCC-----CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHh
Confidence            99999987        57788889999999998875     2379999999875443222322    2345566777777


Q ss_pred             cCCeEEEEEeCChHHHHHHhhhcc
Q 027388          197 RPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       197 k~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                      +-.+.+++++.........++..+
T Consensus       335 ~~ws~~v~tt~e~~~~~~~~ra~~  358 (381)
T COG0116         335 AGWSRYVFTTSEDLLFCLGLRADK  358 (381)
T ss_pred             cCCceEEEEccHHHHHHHhhhhcc
Confidence            777888888876555554554443

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.59  E-value=4.7e-07  Score=75.93  Aligned_cols=105  Identities=15%  Similarity=0.183  Sum_probs=77.6

Q ss_pred             CCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      +.+|||++||+|..++.++.. ...+|+++|+++.+++.+++++..+        ++. ++.+.++|+..+..     ..
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N--------~~~-~~~v~~~Da~~~l~-----~~  123 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN--------GLE-NEKVFNKDANALLH-----EE  123 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------CCC-ceEEEhhhHHHHHh-----hc
Confidence            468999999999999998754 3458999999999999999998632        222 35688888865432     13


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHH
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~  211 (224)
                      +.||+|++.- ..    .   ...++....+.+++||+++++.-+...
T Consensus       124 ~~fD~V~lDP-~G----s---~~~~l~~al~~~~~~gilyvSAtD~~~  163 (382)
T PRK04338        124 RKFDVVDIDP-FG----S---PAPFLDSAIRSVKRGGLLCVTATDTAP  163 (382)
T ss_pred             CCCCEEEECC-CC----C---cHHHHHHHHHHhcCCCEEEEEecCchh
Confidence            5799999864 21    1   245777767778999999998555433

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.59  E-value=3.7e-07  Score=68.90  Aligned_cols=104  Identities=26%  Similarity=0.271  Sum_probs=62.9

Q ss_pred             CCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc----
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD----  157 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~----  157 (224)
                      .+.++||+||++|+++..++...  ...++|+|+.+.      ..              ...+.++++|+.+....    
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~--------------~~~~~~i~~d~~~~~~~~~i~   82 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DP--------------LQNVSFIQGDITNPENIKDIR   82 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS---------------TTEEBTTGGGEEEEHSHHGG
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc------cc--------------ccceeeeecccchhhHHHhhh
Confidence            45899999999999999998765  578999999885      00              12355556665432111    


Q ss_pred             ccc-CCCCCeeEEEEccccccc----cC---CHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          158 KVL-ADDAPFDICSCQFAMHYS----WS---TEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       158 ~~~-~~~~~~D~i~~~~~l~~~----~~---~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ... .....+|+|+|..+...-    .+   ...-....+.-+...|++||.+++.+.
T Consensus        83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~  140 (181)
T PF01728_consen   83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF  140 (181)
T ss_dssp             GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred             hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence            000 012699999998832211    00   112344555666678999999988754

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=2.8e-07  Score=69.39  Aligned_cols=109  Identities=20%  Similarity=0.279  Sum_probs=75.6

Q ss_pred             hcCCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEeccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLD  157 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~  157 (224)
                      +.++.++||+|.|+|.++.-++.   ..+...+|||.-++.++.+++++...--.-+....+ ..++.++.+|....-. 
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~-  158 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA-  158 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC-
Confidence            68999999999999988776553   244456999999999999999986211000000001 1346778888776543 


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                          +..+||.|.+.....          ...+++...|++||.+++-
T Consensus       159 ----e~a~YDaIhvGAaa~----------~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  159 ----EQAPYDAIHVGAAAS----------ELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             ----ccCCcceEEEccCcc----------ccHHHHHHhhccCCeEEEe
Confidence                578999999874432          3446677888999988874

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.58  E-value=9.6e-07  Score=73.53  Aligned_cols=112  Identities=12%  Similarity=0.074  Sum_probs=72.6

Q ss_pred             CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc---C
Q 027388           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL---A  161 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~  161 (224)
                      +.+|||++||+|.++..++.. ..++++||+++.+++.|++++..        .++. ++.++++|+.+.......   .
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~--------~~~~-~v~~~~~d~~~~~~~~~~~~~~  267 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAA--------NNID-NVQIIRMSAEEFTQAMNGVREF  267 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHH--------cCCC-cEEEEEcCHHHHHHHHhhcccc
Confidence            347999999999999987744 46999999999999999999863        2332 589999998764321000   0


Q ss_pred             ---C-----CCCeeEEEEccccccccCCHHH-HHHHHHHHHhhccCCeEEEEEeCChHHHHHHhh
Q 027388          162 ---D-----DAPFDICSCQFAMHYSWSTEAR-ARRALANVSALLRPGGTFIGTMPDANVIIKKLR  217 (224)
Q Consensus       162 ---~-----~~~~D~i~~~~~l~~~~~~~~~-~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~  217 (224)
                         .     ...||+|+..-.=       .. ...++..+.   +++++++++. ++..+.+.+.
T Consensus       268 ~~~~~~~~~~~~~d~v~lDPPR-------~G~~~~~l~~l~---~~~~ivYvsC-~p~tlaRDl~  321 (353)
T TIGR02143       268 RRLKGIDLKSYNCSTIFVDPPR-------AGLDPDTCKLVQ---AYERILYISC-NPETLKANLE  321 (353)
T ss_pred             ccccccccccCCCCEEEECCCC-------CCCcHHHHHHHH---cCCcEEEEEc-CHHHHHHHHH
Confidence               0     1237998875431       11 123334443   3677777776 5555555444

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.58  E-value=1e-06  Score=70.83  Aligned_cols=108  Identities=18%  Similarity=0.174  Sum_probs=71.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..+.+|||+|||+|.-+..+...  ...+++++|.|+.|++.++..+.....        ...... .........    
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--------~~~~~~-~~~~~~~~~----   98 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--------NRNAEW-RRVLYRDFL----   98 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--------cccchh-hhhhhcccc----
Confidence            46789999999999766544332  456799999999999999887662110        000101 111111001    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                       .....|+|++.++|..+.+  .....+++.+.+.+.+  .|++..|.
T Consensus        99 -~~~~~DLvi~s~~L~EL~~--~~r~~lv~~LW~~~~~--~LVlVEpG  141 (274)
T PF09243_consen   99 -PFPPDDLVIASYVLNELPS--AARAELVRSLWNKTAP--VLVLVEPG  141 (274)
T ss_pred             -cCCCCcEEEEehhhhcCCc--hHHHHHHHHHHHhccC--cEEEEcCC
Confidence             1234499999999998833  7788899999888876  77766543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=8.5e-07  Score=69.86  Aligned_cols=89  Identities=18%  Similarity=0.160  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      ..+..++......++..|||||+|.|.++..+++.. ..|+++|+++.+++..++.+.           ...+++++.+|
T Consensus        17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~-----------~~~n~~vi~~D   84 (259)
T COG0030          17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLAEVLKERFA-----------PYDNLTVINGD   84 (259)
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEEeCHHHHHHHHHhcc-----------cccceEEEeCc
Confidence            335667777777778999999999999999998554 479999999999999998864           14569999999


Q ss_pred             ccccccccccCCCCCeeEEEEcccc
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAM  175 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l  175 (224)
                      +...++...    .+++.|+++.-.
T Consensus        85 aLk~d~~~l----~~~~~vVaNlPY  105 (259)
T COG0030          85 ALKFDFPSL----AQPYKVVANLPY  105 (259)
T ss_pred             hhcCcchhh----cCCCEEEEcCCC
Confidence            998887311    167888877654

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.55  E-value=1.7e-06  Score=64.66  Aligned_cols=114  Identities=17%  Similarity=0.139  Sum_probs=83.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      -.+.++||+-+|+|.++++.+..+...++.||.+...+...++++..        -++..++.++..|+..... ... .
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~--------l~~~~~~~~~~~da~~~L~-~~~-~  111 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA--------LGLEGEARVLRNDALRALK-QLG-T  111 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH--------hCCccceEEEeecHHHHHH-hcC-C
Confidence            47899999999999999999888888999999999999999999872        3444668888888873311 110 2


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHH--HHhhccCCeEEEEEeCCh
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALAN--VSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~--~~~~lk~gG~li~~~~~~  209 (224)
                      .++||+|+..-.++.   ..-+....+..  -..+|+|+|.+++.+...
T Consensus       112 ~~~FDlVflDPPy~~---~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         112 REPFDLVFLDPPYAK---GLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             CCcccEEEeCCCCcc---chhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            235999998876652   11222333333  557899999999986643

>PRK00536 speE spermidine synthase; Provisional

Probab=98.53  E-value=1.4e-06  Score=69.06  Aligned_cols=101  Identities=13%  Similarity=0.019  Sum_probs=75.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      +.+++||=||.|.|..+.++++.. .+++.||+++.+++.+++.+....     ..--+.+++++.. +.+  .     .
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~-----~~~~DpRv~l~~~-~~~--~-----~  136 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFH-----EVKNNKNFTHAKQ-LLD--L-----D  136 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHH-----HhhcCCCEEEeeh-hhh--c-----c
Confidence            567899999999999999998765 499999999999999999776211     0112445665541 111  0     2


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      .+.||+|++....         ...+.+.+++.|+|||+++...
T Consensus       137 ~~~fDVIIvDs~~---------~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        137 IKKYDLIICLQEP---------DIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CCcCCEEEEcCCC---------ChHHHHHHHHhcCCCcEEEECC
Confidence            3689999987531         1467899999999999999853

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=2.3e-06  Score=66.95  Aligned_cols=129  Identities=17%  Similarity=0.192  Sum_probs=95.9

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      ..++..+...++.+|||-|.|+|.++-.+++.  .-++++.+|+-....+.|.+.+.        ..+++.++++.+-|+
T Consensus        95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr--------~hgi~~~vt~~hrDV  166 (314)
T KOG2915|consen   95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFR--------EHGIGDNVTVTHRDV  166 (314)
T ss_pred             HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHH--------HhCCCcceEEEEeec
Confidence            33455567789999999999999999988764  45799999999999999999987        567899999999999


Q ss_pred             cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCe-EEEEEeCChHHHH---HHhhhcccc
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPDANVII---KKLREEHFC  222 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG-~li~~~~~~~~~~---~~~~~~gf~  222 (224)
                      ....+..   ....+|.|+....-         +-.++-.+.+.||.+| +|+.-.|-.+.+.   +.+...||+
T Consensus       167 c~~GF~~---ks~~aDaVFLDlPa---------Pw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~  229 (314)
T KOG2915|consen  167 CGSGFLI---KSLKADAVFLDLPA---------PWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFI  229 (314)
T ss_pred             ccCCccc---cccccceEEEcCCC---------hhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCc
Confidence            8766532   35789999876532         2345556666888766 6666566655444   355566775

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.52  E-value=8e-07  Score=68.22  Aligned_cols=97  Identities=18%  Similarity=0.134  Sum_probs=73.6

Q ss_pred             CCeEEEecCCCchhHHHHHh-hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           85 GDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~-~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      +++++|||+|.|.-++.++- ....+++.+|....-+...+......+         -.|++++++.++++..      .
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~---------L~nv~i~~~RaE~~~~------~  132 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG---------LENVEIVHGRAEEFGQ------E  132 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC---------CCCeEEehhhHhhccc------c
Confidence            68999999999999998763 234469999999988877776655322         2249999999998864      2


Q ss_pred             CC-eeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          164 AP-FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       164 ~~-~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      .. ||+|++..+.        .+..++.-+..++++||.++.
T Consensus       133 ~~~~D~vtsRAva--------~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         133 KKQYDVVTSRAVA--------SLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             cccCcEEEeehcc--------chHHHHHHHHHhcccCCcchh
Confidence            34 9999987653        355677778899999888653

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=1.4e-06  Score=74.01  Aligned_cols=120  Identities=21%  Similarity=0.261  Sum_probs=84.7

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      +..+...++.++||+=||.|.+++.++ ....+|+|+|+++.+++.|+++++.+        ++.+ ++|..++++++..
T Consensus       286 ~~~~~~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n--------~i~N-~~f~~~~ae~~~~  355 (432)
T COG2265         286 LEWLELAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAAN--------GIDN-VEFIAGDAEEFTP  355 (432)
T ss_pred             HHHHhhcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHc--------CCCc-EEEEeCCHHHHhh
Confidence            334444577899999999999999987 56679999999999999999998843        3443 9999999988765


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHh
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL  216 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~  216 (224)
                      ...  ....+|.|+..-       +......-+-+....++|..+++++. |+..+.+.+
T Consensus       356 ~~~--~~~~~d~VvvDP-------PR~G~~~~~lk~l~~~~p~~IvYVSC-NP~TlaRDl  405 (432)
T COG2265         356 AWW--EGYKPDVVVVDP-------PRAGADREVLKQLAKLKPKRIVYVSC-NPATLARDL  405 (432)
T ss_pred             hcc--ccCCCCEEEECC-------CCCCCCHHHHHHHHhcCCCcEEEEeC-CHHHHHHHH
Confidence            321  235789998753       33334423333444556777777765 666555543

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.47  E-value=3e-06  Score=64.98  Aligned_cols=116  Identities=18%  Similarity=0.087  Sum_probs=82.5

Q ss_pred             EEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCe
Q 027388           88 VLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF  166 (224)
Q Consensus        88 iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  166 (224)
                      |.||||--|.+...+++.+. .+++++|+++..++.|++++.        ..++...+.+..+|-.+.-.     +.+..
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~--------~~~l~~~i~~rlgdGL~~l~-----~~e~~   67 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA--------KYGLEDRIEVRLGDGLEVLK-----PGEDV   67 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH--------HTT-TTTEEEEE-SGGGG-------GGG--
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH--------HcCCcccEEEEECCcccccC-----CCCCC
Confidence            68999999999999987654 469999999999999999988        45667789999999654221     22348


Q ss_pred             eEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC-ChHHHHHHhhhcccc
Q 027388          167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP-DANVIIKKLREEHFC  222 (224)
Q Consensus       167 D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~-~~~~~~~~~~~~gf~  222 (224)
                      |.|+..++      +..-...++......++....|++... +...++..|.+.||.
T Consensus        68 d~ivIAGM------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~  118 (205)
T PF04816_consen   68 DTIVIAGM------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFE  118 (205)
T ss_dssp             -EEEEEEE-------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEE
T ss_pred             CEEEEecC------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCE
Confidence            99987775      335567788888777777667887644 457889999999984

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.46  E-value=3.4e-07  Score=67.25  Aligned_cols=76  Identities=25%  Similarity=0.434  Sum_probs=53.4

Q ss_pred             CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP  165 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  165 (224)
                      ..|+|+.||.|+.+++++. .+..|++||+++..++.|+.++.        .-+...++.++++|+.+......  ....
T Consensus         1 ~~vlD~fcG~GGNtIqFA~-~~~~Viaidid~~~~~~a~hNa~--------vYGv~~~I~~i~gD~~~~~~~~~--~~~~   69 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFAR-TFDRVIAIDIDPERLECAKHNAE--------VYGVADNIDFICGDFFELLKRLK--SNKI   69 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHH-TT-EEEEEES-HHHHHHHHHHHH--------HTT-GGGEEEEES-HHHHGGGB-------
T ss_pred             CEEEEeccCcCHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEeCCHHHHHhhcc--cccc
Confidence            3699999999999999985 46689999999999999999987        34556679999999987542110  1112


Q ss_pred             eeEEEEc
Q 027388          166 FDICSCQ  172 (224)
Q Consensus       166 ~D~i~~~  172 (224)
                      +|+|+++
T Consensus        70 ~D~vFlS   76 (163)
T PF09445_consen   70 FDVVFLS   76 (163)
T ss_dssp             -SEEEE-
T ss_pred             ccEEEEC
Confidence            8999976

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.42  E-value=3.5e-06  Score=73.96  Aligned_cols=102  Identities=15%  Similarity=0.071  Sum_probs=60.8

Q ss_pred             eehhhhHHHHHHHHHHHh----hcCCCeEEEecCCCchhHHHHHhhc---------CCeEEEEeCChhHHHHHHHhccCC
Q 027388           64 IHLKKLNNWIKSVLVQLY----ARRGDVVLDLACGKGGDLIKWDKAK---------IGYYVGIDIAEGSIEDCRTRYNGD  130 (224)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~----~~~~~~iLDiGcG~G~~~~~l~~~~---------~~~~~gvD~s~~~~~~a~~~~~~~  130 (224)
                      +++..+...+...+....    .....+|||.|||+|.++..++...         ...++|+|+++..+..++.++...
T Consensus         7 yTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~   86 (524)
T TIGR02987         7 FTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF   86 (524)
T ss_pred             CCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc
Confidence            345555555444432211    1145689999999999998876532         146889999999999999887622


Q ss_pred             cccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccc
Q 027388          131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFA  174 (224)
Q Consensus       131 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~  174 (224)
                      +         ...+.+.+.|.............+.||+|+++-.
T Consensus        87 ~---------~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPP  121 (524)
T TIGR02987        87 A---------LLEINVINFNSLSYVLLNIESYLDLFDIVITNPP  121 (524)
T ss_pred             C---------CCCceeeecccccccccccccccCcccEEEeCCC
Confidence            1         1123444444332211000002368999998754

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.42  E-value=2.1e-06  Score=70.26  Aligned_cols=102  Identities=25%  Similarity=0.197  Sum_probs=84.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ..|.+|||+-+|-|-+++.++..+..+|+++|+++..++.+++++.-        +++...+..+++|......     .
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~L--------N~v~~~v~~i~gD~rev~~-----~  253 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRL--------NKVEGRVEPILGDAREVAP-----E  253 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHh--------cCccceeeEEeccHHHhhh-----c
Confidence            56899999999999999999877766699999999999999999873        4555568999999988765     2


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .+.+|-|++...-        ....++....+.+++||++.+-
T Consensus       254 ~~~aDrIim~~p~--------~a~~fl~~A~~~~k~~g~iHyy  288 (341)
T COG2520         254 LGVADRIIMGLPK--------SAHEFLPLALELLKDGGIIHYY  288 (341)
T ss_pred             cccCCEEEeCCCC--------cchhhHHHHHHHhhcCcEEEEE
Confidence            3889999987642        3346777788888889988765

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.40  E-value=7.2e-06  Score=62.82  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=82.3

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++++||||.=||.-+..++..  ..++|+++|+++...+.+....+        ..+....|+++++++.+......
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k--------~agv~~KI~~i~g~a~esLd~l~  142 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK--------LAGVDHKITFIEGPALESLDELL  142 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH--------hccccceeeeeecchhhhHHHHH
Confidence            357899999999888766665543  56799999999999999976665        45667789999998765422111


Q ss_pred             -cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 -LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 -~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       -...+.||.++...       .-.....+..++.+++|+||++++.
T Consensus       143 ~~~~~~tfDfaFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  143 ADGESGTFDFAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             hcCCCCceeEEEEcc-------chHHHHHHHHHHHhhcccccEEEEe
Confidence             01468999998753       1245568899999999999999985

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.39  E-value=2.6e-05  Score=62.36  Aligned_cols=106  Identities=17%  Similarity=0.194  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      ....++..+...++..|||||+|.|.++..++... .+++++|+++.+++..++.+..           ..+++++.+|+
T Consensus        18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~-----------~~~~~vi~~D~   85 (262)
T PF00398_consen   18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS-----------NPNVEVINGDF   85 (262)
T ss_dssp             HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT-----------CSSEEEEES-T
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh-----------cccceeeecch
Confidence            35556666666789999999999999999998666 7999999999999999987652           45699999999


Q ss_pred             cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccC
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP  198 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~  198 (224)
                      ..++.....  ......|+++... ++  +    ..++.++...-+.
T Consensus        86 l~~~~~~~~--~~~~~~vv~NlPy-~i--s----~~il~~ll~~~~~  123 (262)
T PF00398_consen   86 LKWDLYDLL--KNQPLLVVGNLPY-NI--S----SPILRKLLELYRF  123 (262)
T ss_dssp             TTSCGGGHC--SSSEEEEEEEETG-TG--H----HHHHHHHHHHGGG
T ss_pred             hccccHHhh--cCCceEEEEEecc-cc--h----HHHHHHHhhcccc
Confidence            987763211  2456677776544 33  2    3455555554344

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.38  E-value=1.7e-06  Score=65.60  Aligned_cols=128  Identities=22%  Similarity=0.291  Sum_probs=85.9

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv  113 (224)
                      ..-..+|....+.|.......-..+...-+.++..+...+...+..-  -....|+|..||.|+.+++.+ ..+..|++|
T Consensus        46 p~l~kywk~ryrlfsrfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~--~~~~~iidaf~g~gGntiqfa-~~~~~VisI  122 (263)
T KOG2730|consen   46 PELFKYWKNRYRLFSRFDSGIYMDREGWFSVTPEKIAEHIANRVVAC--MNAEVIVDAFCGVGGNTIQFA-LQGPYVIAI  122 (263)
T ss_pred             hHHHHHHHHHHHHHHhhccceeecccceEEeccHHHHHHHHHHHHHh--cCcchhhhhhhcCCchHHHHH-HhCCeEEEE
Confidence            44567888887777644433222222222334555555544443332  256789999999999999887 556699999


Q ss_pred             eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcc
Q 027388          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF  173 (224)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~  173 (224)
                      |+++.-+.-|+.+++        .-++..++.|+++|+.++-- .+.+....+|+|+.+.
T Consensus       123 diDPikIa~AkhNae--------iYGI~~rItFI~GD~ld~~~-~lq~~K~~~~~vf~sp  173 (263)
T KOG2730|consen  123 DIDPVKIACARHNAE--------VYGVPDRITFICGDFLDLAS-KLKADKIKYDCVFLSP  173 (263)
T ss_pred             eccHHHHHHHhccce--------eecCCceeEEEechHHHHHH-HHhhhhheeeeeecCC
Confidence            999999999999887        56788899999999876532 1111334577887654

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.37  E-value=8.7e-06  Score=61.69  Aligned_cols=120  Identities=17%  Similarity=0.058  Sum_probs=88.5

Q ss_pred             hhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEE
Q 027388           68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI  147 (224)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~  147 (224)
                      +...++......+. .++.+||++|-|-|...-.+.+....+-+.++..+..++..++..-.          -..+|..+
T Consensus        86 WEtpiMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~----------ek~nViil  154 (271)
T KOG1709|consen   86 WETPIMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR----------EKENVIIL  154 (271)
T ss_pred             hhhHHHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc----------cccceEEE
Confidence            34444444444443 67899999999999877777666777888999999999998887542          24568888


Q ss_pred             eccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       148 ~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .+-+++.... +  +++.||-|+-.-.-.+.    ++...+...+.++|||+|++-+.
T Consensus       155 ~g~WeDvl~~-L--~d~~FDGI~yDTy~e~y----Edl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  155 EGRWEDVLNT-L--PDKHFDGIYYDTYSELY----EDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             ecchHhhhcc-c--cccCcceeEeechhhHH----HHHHHHHHHHhhhcCCCceEEEe
Confidence            8877654321 1  46889999865544544    78899999999999999998753

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.33  E-value=1.1e-06  Score=72.93  Aligned_cols=107  Identities=21%  Similarity=0.231  Sum_probs=87.4

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++..++|+|||-|...........+.++|+|.++..+..+......        ..+.....++.+|+..-+.     
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~--------~~l~~k~~~~~~~~~~~~f-----  174 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK--------AYLDNKCNFVVADFGKMPF-----  174 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH--------HHhhhhcceehhhhhcCCC-----
Confidence            346668999999999999888766778999999999888777766542        2334445567788777666     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ++..||.+.+..+..|.    ++...++.+++++++|||+++..
T Consensus       175 edn~fd~v~~ld~~~~~----~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  175 EDNTFDGVRFLEVVCHA----PDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             CccccCcEEEEeecccC----CcHHHHHHHHhcccCCCceEEeH
Confidence            68999999999999998    78899999999999999999974

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.33  E-value=2.3e-06  Score=71.55  Aligned_cols=100  Identities=11%  Similarity=0.082  Sum_probs=78.3

Q ss_pred             CeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      .+|||+.||+|..++.++..  +...|+++|+++..++.+++++..+        ... ++.+++.|+..+...    ..
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N--------~~~-~~~v~~~Da~~~l~~----~~  112 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN--------SVE-NIEVPNEDAANVLRY----RN  112 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh--------CCC-cEEEEchhHHHHHHH----hC
Confidence            58999999999999999875  4578999999999999999998732        222 478888998765421    13


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ..||+|...- +.       .+..++..+.+.+++||+|+++.
T Consensus       113 ~~fDvIdlDP-fG-------s~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       113 RKFHVIDIDP-FG-------TPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             CCCCEEEeCC-CC-------CcHHHHHHHHHhcccCCEEEEEe
Confidence            5799998765 32       12468888999999999999983

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.31  E-value=1.5e-07  Score=70.72  Aligned_cols=94  Identities=14%  Similarity=0.194  Sum_probs=71.3

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      .+.++||+|+|.|..+..++ ..+.+|++.++|..|....++.--              ++-. ..+..+.        +
T Consensus       112 ~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~y--------------nVl~-~~ew~~t--------~  167 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKNY--------------NVLT-EIEWLQT--------D  167 (288)
T ss_pred             CCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcCC--------------ceee-ehhhhhc--------C
Confidence            45799999999999998875 566689999999999988876522              2211 1122222        3


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccC-CeEEEEE
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRP-GGTFIGT  205 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~-gG~li~~  205 (224)
                      -++|+|.|...+.-+    .++-.+++.++.+|+| +|.+|+.
T Consensus       168 ~k~dli~clNlLDRc----~~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  168 VKLDLILCLNLLDRC----FDPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             ceeehHHHHHHHHhh----cChHHHHHHHHHHhccCCCcEEEE
Confidence            479999999988766    5677899999999999 8887764

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.31  E-value=1.4e-05  Score=67.69  Aligned_cols=124  Identities=20%  Similarity=0.253  Sum_probs=93.2

Q ss_pred             hhhHHHHHHHHHHH-hhcCCC-eEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCe
Q 027388           67 KKLNNWIKSVLVQL-YARRGD-VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA  144 (224)
Q Consensus        67 ~~~~~~~~~~~~~~-~~~~~~-~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v  144 (224)
                      .++..|+....... ...+.. ++|-+|||.-.+...+.+.++..++.+|+|+..++....+..          ....-+
T Consensus        29 ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~----------~~~~~~   98 (482)
T KOG2352|consen   29 EWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA----------KERPEM   98 (482)
T ss_pred             HHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc----------cCCcce
Confidence            44444444332222 334445 999999999999999887889999999999999988876653          113347


Q ss_pred             eEEeccccccccccccCCCCCeeEEEEccccccccCCHHHH------HHHHHHHHhhccCCeEEEEE
Q 027388          145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARA------RRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       145 ~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~------~~~l~~~~~~lk~gG~li~~  205 (224)
                      .+...|+..+.+     ++++||+|+.-+.+..+++.....      ...+.++.+++++||+++..
T Consensus        99 ~~~~~d~~~l~f-----edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv  160 (482)
T KOG2352|consen   99 QMVEMDMDQLVF-----EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV  160 (482)
T ss_pred             EEEEecchhccC-----CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence            888899888887     689999999999888886654433      45788999999999986654

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=8.8e-06  Score=61.80  Aligned_cols=116  Identities=27%  Similarity=0.330  Sum_probs=78.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcC--CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++..|+|+|+..|+|+..+++...  ..++++|+.+                   ...+. ++.++++|++.-+....
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-------------------~~~~~-~V~~iq~d~~~~~~~~~  102 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-------------------MKPIP-GVIFLQGDITDEDTLEK  102 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-------------------cccCC-CceEEeeeccCccHHHH
Confidence            45789999999999999998876533  3599999977                   12223 38999999886542111


Q ss_pred             c---CCCCCeeEEEEcccc--------ccccCCHHHHHHHHHHHHhhccCCeEEEEEe---CChHHHHHHhhh
Q 027388          160 L---ADDAPFDICSCQFAM--------HYSWSTEARARRALANVSALLRPGGTFIGTM---PDANVIIKKLRE  218 (224)
Q Consensus       160 ~---~~~~~~D~i~~~~~l--------~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~---~~~~~~~~~~~~  218 (224)
                      +   .....+|+|++..+-        .|. -...-...++.-....|++||.+++..   .+.+.++..++.
T Consensus       103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~-r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~  174 (205)
T COG0293         103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHA-RSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR  174 (205)
T ss_pred             HHHHcCCCCcceEEecCCCCcCCCccccHH-HHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence            1   134557999977643        221 012234556777788999999999764   356666666653

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.29  E-value=1.5e-05  Score=57.70  Aligned_cols=100  Identities=24%  Similarity=0.440  Sum_probs=68.8

Q ss_pred             EEEecCCCchhHHHHHhhcC--CeEEEEeCChhHHHHHHHhccCCcccccccccCCCC-eeEEeccccc--cccccccCC
Q 027388           88 VLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYE--VHLDKVLAD  162 (224)
Q Consensus        88 iLDiGcG~G~~~~~l~~~~~--~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~--~~~~~~~~~  162 (224)
                      ++|+|||+|... .+.....  ..++++|++..++..++....          ..... +.+...+...  .+.     .
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-----~  115 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE----------GAGLGLVDFVVADALGGVLPF-----E  115 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh----------hcCCCceEEEEeccccCCCCC-----C
Confidence            999999999865 2222222  378899999999998555542          10111 5677777665  444     2


Q ss_pred             C-CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          163 D-APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       163 ~-~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      . ..||++.+....++.    . ....+..+.+.++++|.+++....
T Consensus       116 ~~~~~d~~~~~~~~~~~----~-~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         116 DSASFDLVISLLVLHLL----P-PAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             CCCceeEEeeeeehhcC----C-HHHHHHHHHHhcCCCcEEEEEecc
Confidence            3 489999444444443    1 788999999999999999987664

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.28  E-value=1.6e-05  Score=57.53  Aligned_cols=97  Identities=23%  Similarity=0.192  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHHH-HhhcCCCeEEEecCCCchhHHHHHh-----hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC
Q 027388           68 KLNNWIKSVLVQ-LYARRGDVVLDLACGKGGDLIKWDK-----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS  141 (224)
Q Consensus        68 ~~~~~~~~~~~~-~~~~~~~~iLDiGcG~G~~~~~l~~-----~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  141 (224)
                      .+..++..+... ....+...|+|+|||.|.++..++.     ....++++||.++..++.+.++.....      ..+.
T Consensus         8 ~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~   81 (141)
T PF13679_consen    8 RMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG------SDLE   81 (141)
T ss_pred             HHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc------chhh
Confidence            333444444333 2235678999999999999998886     456689999999999999988876221      1123


Q ss_pred             CCeeEEeccccccccccccCCCCCeeEEEEccccc
Q 027388          142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH  176 (224)
Q Consensus       142 ~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~  176 (224)
                      .++.+..++.....      .....++++..++-.
T Consensus        82 ~~~~~~~~~~~~~~------~~~~~~~~vgLHaCG  110 (141)
T PF13679_consen   82 KRLSFIQGDIADES------SSDPPDILVGLHACG  110 (141)
T ss_pred             ccchhhccchhhhc------ccCCCeEEEEeeccc
Confidence            44566666554432      246678888766544

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.27  E-value=1.2e-05  Score=66.96  Aligned_cols=59  Identities=29%  Similarity=0.421  Sum_probs=44.6

Q ss_pred             CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      ..|||+-||.|.++..++ ....+|+|||.++.+++.|++++..++        + .+++|+++++.++
T Consensus       198 ~~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~--------i-~n~~f~~~~~~~~  256 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNG--------I-DNVEFIRGDAEDF  256 (352)
T ss_dssp             TEEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT-----------SEEEEE--SHHC
T ss_pred             CcEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcC--------C-CcceEEEeeccch
Confidence            389999999999999987 556699999999999999999987432        2 3489998876554

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.24  E-value=5.2e-06  Score=61.57  Aligned_cols=100  Identities=16%  Similarity=0.155  Sum_probs=77.2

Q ss_pred             CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      .+.+.|+|+|+|.++...+ +...+|++++.++.....|.+++.-         ....++.++.+|+.+..+       .
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa-~~A~rViAiE~dPk~a~~a~eN~~v---------~g~~n~evv~gDA~~y~f-------e   95 (252)
T COG4076          33 EDTFADLGAGSGILSVVAA-HAAERVIAIEKDPKRARLAEENLHV---------PGDVNWEVVVGDARDYDF-------E   95 (252)
T ss_pred             hhceeeccCCcchHHHHHH-hhhceEEEEecCcHHHHHhhhcCCC---------CCCcceEEEecccccccc-------c
Confidence            4789999999998887655 4567999999999999999999752         234469999999988775       4


Q ss_pred             CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                      ..|+|+|-+.=..+  -.+.+..+++.+...||.++.++
T Consensus        96 ~ADvvicEmlDTaL--i~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076          96 NADVVICEMLDTAL--IEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             ccceeHHHHhhHHh--hcccccHHHHHHHHHhhcCCccc
Confidence            68999986531111  12456778888888999988877

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=3.4e-05  Score=64.33  Aligned_cols=129  Identities=18%  Similarity=0.248  Sum_probs=87.4

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhhc---CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~---~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      +.+.++.+|||++++.|+-+..+++..   ...|+++|.++..+...+.++...        +.. ++...+.|....+.
T Consensus       152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl--------G~~-nv~~~~~d~~~~~~  222 (355)
T COG0144         152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL--------GVR-NVIVVNKDARRLAE  222 (355)
T ss_pred             cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc--------CCC-ceEEEecccccccc
Confidence            456788999999999999888887653   345699999999999999998733        222 26778888665432


Q ss_pred             ccccCCCCCeeEEEEcc------ccc------cccCC------HHHHHHHHHHHHhhccCCeEEEEEeC------ChHHH
Q 027388          157 DKVLADDAPFDICSCQF------AMH------YSWST------EARARRALANVSALLRPGGTFIGTMP------DANVI  212 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~------~l~------~~~~~------~~~~~~~l~~~~~~lk~gG~li~~~~------~~~~~  212 (224)
                      ...  ....||.|++.-      ++.      |-+..      ..-+..+|....++|||||.|+.+|.      |...+
T Consensus       223 ~~~--~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV  300 (355)
T COG0144         223 LLP--GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVV  300 (355)
T ss_pred             ccc--ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHH
Confidence            100  123599998432      221      00000      12357789999999999999999866      34444


Q ss_pred             HHHhhhc
Q 027388          213 IKKLREE  219 (224)
Q Consensus       213 ~~~~~~~  219 (224)
                      ...+++.
T Consensus       301 ~~~L~~~  307 (355)
T COG0144         301 ERFLERH  307 (355)
T ss_pred             HHHHHhC
Confidence            4555443

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=1.4e-05  Score=61.67  Aligned_cols=115  Identities=15%  Similarity=0.142  Sum_probs=82.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCee-EEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~  161 (224)
                      .+++.+||||+.||+++.-+++.+...|+++|..-..+.+--+.              ++++. +...|+..+...+.  
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~--------------d~rV~~~E~tN~r~l~~~~~--  141 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN--------------DPRVIVLERTNVRYLTPEDF--  141 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc--------------CCcEEEEecCChhhCCHHHc--
Confidence            47899999999999999999988888999999998877765544              23343 45566665544322  


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE-EeCChHHHHHHhhhccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG-TMPDANVIIKKLREEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~-~~~~~~~~~~~~~~~gf  221 (224)
                       .+..|+++|.-++.       ....+|-.+..+++++|-++. .-|..+.-.+.+.+.|.
T Consensus       142 -~~~~d~~v~DvSFI-------SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGv  194 (245)
T COG1189         142 -TEKPDLIVIDVSFI-------SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGV  194 (245)
T ss_pred             -ccCCCeEEEEeehh-------hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCce
Confidence             24789999876653       457888999999999986554 44444544444444443

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.09  E-value=2.3e-05  Score=58.59  Aligned_cols=103  Identities=21%  Similarity=0.187  Sum_probs=75.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      -.+++|||+|+|+|-.++..+..+...++..|+.+.......-+.+.+          ...+.+...|...        .
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~an----------gv~i~~~~~d~~g--------~  139 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAAN----------GVSILFTHADLIG--------S  139 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhc----------cceeEEeeccccC--------C
Confidence            468999999999998888877777788999999987777776666533          3447788887654        2


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccC-CeEEEEEeCC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRP-GGTFIGTMPD  208 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~-gG~li~~~~~  208 (224)
                      +..||+++...+++.-    +....++. +++.|+. |-.+++..|.
T Consensus       140 ~~~~Dl~LagDlfy~~----~~a~~l~~-~~~~l~~~g~~vlvgdp~  181 (218)
T COG3897         140 PPAFDLLLAGDLFYNH----TEADRLIP-WKDRLAEAGAAVLVGDPG  181 (218)
T ss_pred             CcceeEEEeeceecCc----hHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence            5789999998887643    55666777 5555555 5556666664

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.07  E-value=7.2e-05  Score=59.76  Aligned_cols=109  Identities=16%  Similarity=0.085  Sum_probs=66.1

Q ss_pred             CCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           85 GDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      +.+|+=||||.=-++.-++..   ....++++|+++..++.+++.+...       .++...+.|+++|..+...     
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-------~~L~~~m~f~~~d~~~~~~-----  188 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-------LGLSKRMSFITADVLDVTY-----  188 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----------HH-SSEEEEES-GGGG-G-----
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-------ccccCCeEEEecchhcccc-----
Confidence            459999999975555544432   2457889999999999999876621       2456779999999877654     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ....||+|+......-   ...+...++.++.+.++||+.+++-..+
T Consensus       189 dl~~~DvV~lAalVg~---~~e~K~~Il~~l~~~m~~ga~l~~Rsa~  232 (276)
T PF03059_consen  189 DLKEYDVVFLAALVGM---DAEPKEEILEHLAKHMAPGARLVVRSAH  232 (276)
T ss_dssp             G----SEEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred             ccccCCEEEEhhhccc---ccchHHHHHHHHHhhCCCCcEEEEecch
Confidence            3478999987665431   3456789999999999999999987443

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.99  E-value=8.7e-05  Score=60.00  Aligned_cols=116  Identities=22%  Similarity=0.322  Sum_probs=81.7

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      +...++.+|||++++.|+-+..+++.  +.+.++++|++...+...+.++...        + ..++.....|.......
T Consensus        81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~--------g-~~~v~~~~~D~~~~~~~  151 (283)
T PF01189_consen   81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL--------G-VFNVIVINADARKLDPK  151 (283)
T ss_dssp             HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT--------T--SSEEEEESHHHHHHHH
T ss_pred             ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc--------C-CceEEEEeecccccccc
Confidence            35678889999999999998888764  4579999999999999999887732        2 22366776777655321


Q ss_pred             cccCCCCCeeEEEEcc------cccccc------CC------HHHHHHHHHHHHhhc----cCCeEEEEEeC
Q 027388          158 KVLADDAPFDICSCQF------AMHYSW------ST------EARARRALANVSALL----RPGGTFIGTMP  207 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~------~l~~~~------~~------~~~~~~~l~~~~~~l----k~gG~li~~~~  207 (224)
                      .   ....||.|+..-      ++..-.      ..      ..-+..+|+...+.+    +|||+++.+|.
T Consensus       152 ~---~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC  220 (283)
T PF01189_consen  152 K---PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC  220 (283)
T ss_dssp             H---HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred             c---cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence            1   134699999531      111110      00      012567899999999    99999999876

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.97  E-value=0.00053  Score=52.48  Aligned_cols=121  Identities=14%  Similarity=0.082  Sum_probs=89.9

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+..+.||||--+.+...+.+.+ ...++..|+++..++.|.+.+.        ...+...+...++|....-.     
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~--------~~~l~~~i~vr~~dgl~~l~-----   81 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVK--------KNNLSERIDVRLGDGLAVLE-----   81 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHH--------hcCCcceEEEeccCCccccC-----
Confidence            445569999999999999988764 4568899999999999999988        45666678888888643221     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe-CChHHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM-PDANVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~-~~~~~~~~~~~~~gf~  222 (224)
                      .++.+|+|+..++      +-.-...++.+-.+.|+.=-.|++.. -+...+++.+.+.+|.
T Consensus        82 ~~d~~d~ivIAGM------GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~  137 (226)
T COG2384          82 LEDEIDVIVIAGM------GGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYE  137 (226)
T ss_pred             ccCCcCEEEEeCC------cHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCce
Confidence            3568999987765      23456677777777776433566653 3457899999988874

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.96  E-value=0.00015  Score=55.66  Aligned_cols=102  Identities=21%  Similarity=0.211  Sum_probs=68.6

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhH----HHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGS----IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ..+.++.+||-+|+++|.....+..-  ..+.|++|+.|+..    +..|++|-               |+-.+.+|+..
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~---------------NIiPIl~DAr~  133 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP---------------NIIPILEDARH  133 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST---------------TEEEEES-TTS
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC---------------ceeeeeccCCC
Confidence            45678999999999999888777653  36789999999954    55555553               48888888863


Q ss_pred             c-ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          154 V-HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       154 ~-~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      = ....   --+.+|+|++.-+-      .+...-++.++...||+||.+++.
T Consensus       134 P~~Y~~---lv~~VDvI~~DVaQ------p~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  134 PEKYRM---LVEMVDVIFQDVAQ------PDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             GGGGTT---TS--EEEEEEE-SS------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hHHhhc---ccccccEEEecCCC------hHHHHHHHHHHHhhccCCcEEEEE
Confidence            1 1111   23699999976542      244556777888999999998876

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.94  E-value=5e-05  Score=62.04  Aligned_cols=88  Identities=14%  Similarity=0.198  Sum_probs=61.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.++|||||++|+++..+++.+. .|++||..+ +-...   ..            ..+|.+...|......     
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~L---~~------------~~~V~h~~~d~fr~~p-----  266 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQSL---MD------------TGQVEHLRADGFKFRP-----  266 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHhh---hC------------CCCEEEEeccCcccCC-----
Confidence            35789999999999999999986655 999999554 22221   11            4458888888655432     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG  199 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g  199 (224)
                      ..+.+|+++|..+-.        +..+..-+.++|..|
T Consensus       267 ~~~~vDwvVcDmve~--------P~rva~lm~~Wl~~g  296 (357)
T PRK11760        267 PRKNVDWLVCDMVEK--------PARVAELMAQWLVNG  296 (357)
T ss_pred             CCCCCCEEEEecccC--------HHHHHHHHHHHHhcC
Confidence            257899999987632        345556666666655

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.88  E-value=1.6e-05  Score=54.47  Aligned_cols=100  Identities=22%  Similarity=0.259  Sum_probs=45.0

Q ss_pred             EEecCCCchhHHHHHhh---c-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           89 LDLACGKGGDLIKWDKA---K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        89 LDiGcG~G~~~~~l~~~---~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      ||||+..|..+..+++.   . ..+++++|..+. .+.+.+.+.        ...+..+++++.++..+.-. ..  ..+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~--------~~~~~~~~~~~~g~s~~~l~-~~--~~~   68 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIK--------KAGLSDRVEFIQGDSPDFLP-SL--PDG   68 (106)
T ss_dssp             --------------------------EEEESS---------------------GGG-BTEEEEES-THHHHH-HH--HH-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhh--------hcCCCCeEEEEEcCcHHHHH-Hc--CCC
Confidence            68999999877776643   1 237999999995 222222222        12345569999999865421 11  147


Q ss_pred             CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ++|+|+.... |    ..+.....+..+...|+|||++++-
T Consensus        69 ~~dli~iDg~-H----~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   69 PIDLIFIDGD-H----SYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             -EEEEEEES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CEEEEEECCC-C----CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            9999998763 2    2266778899999999999999874

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.85  E-value=0.00032  Score=56.65  Aligned_cols=137  Identities=18%  Similarity=0.176  Sum_probs=61.9

Q ss_pred             hhhHHHHHHHHHHhhhccc-cchhhhccCCceehhhhHHHHHHHHHHHhhc--CCCeEEEecCCCchhHHHHH-hhcCCe
Q 027388           34 ESTKVFARKVADHYSRRTN-QTLEEREASPIIHLKKLNNWIKSVLVQLYAR--RGDVVLDLACGKGGDLIKWD-KAKIGY  109 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iLDiGcG~G~~~~~l~-~~~~~~  109 (224)
                      ++....-..+-.++..... +....+-.+++..=-.+..|+..++......  ..-++||||||..-.-.-+. ....-+
T Consensus        49 ~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~  128 (299)
T PF05971_consen   49 EAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWS  128 (299)
T ss_dssp             HHHHHHHHHHHHHHH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--E
T ss_pred             HHHHHHHHHHHHHhcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCe
Confidence            3444433333333333443 3333333444432234556666665543211  24689999999874333232 234568


Q ss_pred             EEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcccccc
Q 027388          110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY  177 (224)
Q Consensus       110 ~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~  177 (224)
                      ++|+|+++..++.|++++..+       ..+...|+++...-...-+.......+.||+.+|+--++-
T Consensus       129 fvaTdID~~sl~~A~~nv~~N-------~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~  189 (299)
T PF05971_consen  129 FVATDIDPKSLESARENVERN-------PNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS  189 (299)
T ss_dssp             EEEEES-HHHHHHHHHHHHHT--------T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred             EEEecCCHHHHHHHHHHHHhc-------cccccceEEEEcCCccccchhhhcccceeeEEecCCcccc
Confidence            999999999999999998832       2566778876654222112222224579999999887653

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.75  E-value=0.00015  Score=58.83  Aligned_cols=90  Identities=18%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      +..++..+.+.++..++|.-+|.|+++..++.. ..++|+|+|.++.+++.+++++.          ....++.++++++
T Consensus         9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~----------~~~~R~~~i~~nF   78 (305)
T TIGR00006         9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS----------DFEGRVVLIHDNF   78 (305)
T ss_pred             HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh----------hcCCcEEEEeCCH
Confidence            344555555677889999999999999998865 34799999999999999999876          2245689999988


Q ss_pred             cccccccccCCCCCeeEEEEc
Q 027388          152 YEVHLDKVLADDAPFDICSCQ  172 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~  172 (224)
                      .++..........++|.|+..
T Consensus        79 ~~l~~~l~~~~~~~vDgIl~D   99 (305)
T TIGR00006        79 ANFFEHLDELLVTKIDGILVD   99 (305)
T ss_pred             HHHHHHHHhcCCCcccEEEEe
Confidence            775421100023578888865

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.75  E-value=0.0005  Score=54.52  Aligned_cols=128  Identities=14%  Similarity=0.099  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHhhc-CCCeEEEecCCCch--hHHHHHh--hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCC
Q 027388           69 LNNWIKSVLVQLYAR-RGDVVLDLACGKGG--DLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP  143 (224)
Q Consensus        69 ~~~~~~~~~~~~~~~-~~~~iLDiGcG~G~--~~~~l~~--~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  143 (224)
                      -+.|+.+.+..+... .=..+||||||--.  +.-++++  ....+|+-||.++-.+..++..+...         -...
T Consensus        52 nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~---------~~g~  122 (267)
T PF04672_consen   52 NRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN---------PRGR  122 (267)
T ss_dssp             HHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT----------TTSE
T ss_pred             HHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC---------CCcc
Confidence            345566666655444 34679999999643  3334443  25679999999999999998887631         0112


Q ss_pred             eeEEeccccccc--cc-----cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          144 ARLICGDCYEVH--LD-----KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       144 v~~~~~d~~~~~--~~-----~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ..++++|+.+-.  +.     ..+ ...+-=.++...++||+ ...+++..++..+...|.||.+|+++..
T Consensus       123 t~~v~aD~r~p~~iL~~p~~~~~l-D~~rPVavll~~vLh~v-~D~~dp~~iv~~l~d~lapGS~L~ish~  191 (267)
T PF04672_consen  123 TAYVQADLRDPEAILAHPEVRGLL-DFDRPVAVLLVAVLHFV-PDDDDPAGIVARLRDALAPGSYLAISHA  191 (267)
T ss_dssp             EEEEE--TT-HHHHHCSHHHHCC---TTS--EEEECT-GGGS--CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred             EEEEeCCCCCHHHHhcCHHHHhcC-CCCCCeeeeeeeeeccC-CCccCHHHHHHHHHHhCCCCceEEEEec
Confidence            789999987632  11     111 12333356667888887 3446789999999999999999999844

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=4.1e-05  Score=55.50  Aligned_cols=115  Identities=17%  Similarity=0.147  Sum_probs=75.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHh--hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~--~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...+++|||+|.|--.++.-+..  .....|...|-+...++..++....++..     . ...+.....+......   
T Consensus        27 ~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s-----~-~tsc~vlrw~~~~aqs---   97 (201)
T KOG3201|consen   27 KIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS-----S-LTSCCVLRWLIWGAQS---   97 (201)
T ss_pred             HHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc-----c-cceehhhHHHHhhhHH---
Confidence            34578999999986555544433  24567999999999999988876532100     0 1111122222111111   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      ......||+|+|..++.+-    +...++++.++.+|+|.|.-++..|..
T Consensus        98 q~eq~tFDiIlaADClFfd----E~h~sLvdtIk~lL~p~g~Al~fsPRR  143 (201)
T KOG3201|consen   98 QQEQHTFDIILAADCLFFD----EHHESLVDTIKSLLRPSGRALLFSPRR  143 (201)
T ss_pred             HHhhCcccEEEeccchhHH----HHHHHHHHHHHHHhCcccceeEecCcc
Confidence            0134689999999987642    677889999999999999888777754

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.73  E-value=0.00042  Score=56.82  Aligned_cols=133  Identities=15%  Similarity=0.046  Sum_probs=87.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      +...++|=+|.|.|-.+.++.+-. ..+++.||+++.|++.+++...- ...|+ ..-.+.+++++..|+.+....    
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl-r~~N~-~sf~dpRv~Vv~dDAf~wlr~----  361 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL-RALNQ-GSFSDPRVTVVNDDAFQWLRT----  361 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh-hhhcc-CCccCCeeEEEeccHHHHHHh----
Confidence            456789999999998888887654 78999999999999999854320 01110 112345688888888765432    


Q ss_pred             CCCCeeEEEEccccccccC-CHHHHHHHHHHHHhhccCCeEEEEEeC------C-hHHHHHHhhhccc
Q 027388          162 DDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMP------D-ANVIIKKLREEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~-~~~~~~~~l~~~~~~lk~gG~li~~~~------~-~~~~~~~~~~~gf  221 (224)
                      ..+.||.||....=-.-++ ..-.-..+..-+++.|+++|.+++...      . .-.+..-++++||
T Consensus       362 a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~  429 (508)
T COG4262         362 AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGY  429 (508)
T ss_pred             hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcc
Confidence            3469999997542000000 011125677888999999999998632      2 1245566677775

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.68  E-value=0.00012  Score=52.78  Aligned_cols=42  Identities=14%  Similarity=0.241  Sum_probs=36.5

Q ss_pred             eEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhcc
Q 027388           87 VVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        87 ~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ++||+|||.|.++..++.... .+++++|+++.+.+.+++++.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~   43 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVK   43 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHH
Confidence            489999999999988876544 379999999999999999876

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.67  E-value=0.00017  Score=56.43  Aligned_cols=80  Identities=19%  Similarity=0.221  Sum_probs=56.9

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+.+|+|||||.--++..+.... ...|+++|++..+++....-+.          .+..+..+...|+...+      
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~----------~l~~~~~~~v~Dl~~~~------  167 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLA----------VLGVPHDARVRDLLSDP------  167 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHH----------HTT-CEEEEEE-TTTSH------
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHH----------hhCCCcceeEeeeeccC------
Confidence            457899999999988888776443 4589999999999999988866          23445677777876654      


Q ss_pred             CCCCeeEEEEccccccc
Q 027388          162 DDAPFDICSCQFAMHYS  178 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~  178 (224)
                      +....|+.+..-+++.+
T Consensus       168 ~~~~~DlaLllK~lp~l  184 (251)
T PF07091_consen  168 PKEPADLALLLKTLPCL  184 (251)
T ss_dssp             TTSEESEEEEET-HHHH
T ss_pred             CCCCcchhhHHHHHHHH
Confidence            36789999988887765

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.61  E-value=0.00064  Score=48.65  Aligned_cols=86  Identities=22%  Similarity=0.286  Sum_probs=59.0

Q ss_pred             eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcccccccc-------CC
Q 027388          109 YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW-------ST  181 (224)
Q Consensus       109 ~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~-------~~  181 (224)
                      +|+++|+-+.+++..++++.        ...+..++++++.+-.++..-  . +.+.+|+++.+.  .|++       +.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~--------~~~~~~~v~li~~sHe~l~~~--i-~~~~v~~~iFNL--GYLPggDk~i~T~   67 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLE--------EAGLEDRVTLILDSHENLDEY--I-PEGPVDAAIFNL--GYLPGGDKSITTK   67 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHH--------HTT-GSGEEEEES-GGGGGGT-----S--EEEEEEEE--SB-CTS-TTSB--
T ss_pred             CEEEEECHHHHHHHHHHHHH--------hcCCCCcEEEEECCHHHHHhh--C-ccCCcCEEEEEC--CcCCCCCCCCCcC
Confidence            58999999999999999998        344555799999887776531  1 225899998764  4442       23


Q ss_pred             HHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          182 EARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       182 ~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .+....+++.+.++|++||.+++...
T Consensus        68 ~~TTl~Al~~al~lL~~gG~i~iv~Y   93 (140)
T PF06962_consen   68 PETTLKALEAALELLKPGGIITIVVY   93 (140)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             cHHHHHHHHHHHHhhccCCEEEEEEe
Confidence            34567889999999999999887644

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=0.0001  Score=62.74  Aligned_cols=65  Identities=18%  Similarity=0.339  Sum_probs=52.5

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      .....++.+||+.||||.++..++ .....|+||++++..++.|+.++..++        + .|++|+++-+++.
T Consensus       379 ~~l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ng--------i-sNa~Fi~gqaE~~  443 (534)
T KOG2187|consen  379 AGLPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQING--------I-SNATFIVGQAEDL  443 (534)
T ss_pred             hCCCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcC--------c-cceeeeecchhhc
Confidence            345677899999999999999886 566799999999999999999987433        2 2489999955543

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.58  E-value=0.0008  Score=54.09  Aligned_cols=114  Identities=18%  Similarity=0.160  Sum_probs=69.2

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccc---------ccccccCC--C----------
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH---------HQRRKKFS--F----------  142 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~---------~~~~~~~~--~----------  142 (224)
                      ...+||=-|||.|+++..++..++ .+-|-++|--|+-...-.++.....         |.....+.  +          
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~  228 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI  228 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence            356899999999999999986555 6677788888765544333211111         00000000  0          


Q ss_pred             ----------CeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          143 ----------PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       143 ----------~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                                ....-.+|+.+.--.  ....+.||+|+.++.+.    +......++..+.++|+|||+++=
T Consensus       229 ~p~~~~~~~~~fsicaGDF~evy~~--s~~~~~~d~VvTcfFID----Ta~NileYi~tI~~iLk~GGvWiN  294 (369)
T KOG2798|consen  229 HPASSNGNTGSFSICAGDFLEVYGT--SSGAGSYDVVVTCFFID----TAHNILEYIDTIYKILKPGGVWIN  294 (369)
T ss_pred             cccccCCCCCCccccccceeEEecC--cCCCCccceEEEEEEee----chHHHHHHHHHHHHhccCCcEEEe
Confidence                      000011333322110  00245799999886553    558899999999999999999883

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.56  E-value=0.00086  Score=58.38  Aligned_cols=147  Identities=20%  Similarity=0.263  Sum_probs=91.0

Q ss_pred             CCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc-----CCeEEEEeCChhHHHHHHHhccCCccccc
Q 027388           61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-----IGYYVGIDIAEGSIEDCRTRYNGDADHHQ  135 (224)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-----~~~~~gvD~s~~~~~~a~~~~~~~~~~~~  135 (224)
                      ..++.++.+...+..++   .+.+..+|+|..||+|++........     ...++|.|+.+.....|+.++.-      
T Consensus       166 GEfyTP~~v~~liv~~l---~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l------  236 (489)
T COG0286         166 GEFYTPREVSELIVELL---DPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL------  236 (489)
T ss_pred             CccCChHHHHHHHHHHc---CCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH------
Confidence            45666677655544443   33456699999999999888765431     25688999999999999999762      


Q ss_pred             ccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccc---cc-----------------cCCHH-HHHHHHHHHHh
Q 027388          136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH---YS-----------------WSTEA-RARRALANVSA  194 (224)
Q Consensus       136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~---~~-----------------~~~~~-~~~~~l~~~~~  194 (224)
                        +++...+...++|....+........+.||.|+++-.+.   |.                 +.+.. .-.+++..+..
T Consensus       237 --hgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~  314 (489)
T COG0286         237 --HGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILY  314 (489)
T ss_pred             --hCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHH
Confidence              233323455555544433211011346799988764332   10                 11111 22789999999


Q ss_pred             hccCCeEEEEEeCC--------hHHHHHHhhh
Q 027388          195 LLRPGGTFIGTMPD--------ANVIIKKLRE  218 (224)
Q Consensus       195 ~lk~gG~li~~~~~--------~~~~~~~~~~  218 (224)
                      .|+|||..-+..|+        ...|+..+.+
T Consensus       315 ~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~  346 (489)
T COG0286         315 KLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLE  346 (489)
T ss_pred             hcCCCceEEEEecCCcCcCCCchHHHHHHHHh
Confidence            99998865554442        4456665555

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.52  E-value=0.00061  Score=55.62  Aligned_cols=113  Identities=14%  Similarity=0.154  Sum_probs=62.3

Q ss_pred             CCCeEEEecCCCchhHHHHHh--hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           84 RGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~--~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .+.+|||+|.|.|.-+..+-.  .....++.++.|+..-+........-     -......+..-+..|-..++      
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv-----~t~~td~r~s~vt~dRl~lp------  181 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV-----STEKTDWRASDVTEDRLSLP------  181 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc-----ccccCCCCCCccchhccCCC------
Confidence            467899999999865554432  23456788888886555544332200     00001111111112211111      


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ..+.|++++...-|-+. ..+......++.++.++.|||.|+|..+.
T Consensus       182 ~ad~ytl~i~~~eLl~d-~~ek~i~~~ie~lw~l~~~gg~lVivErG  227 (484)
T COG5459         182 AADLYTLAIVLDELLPD-GNEKPIQVNIERLWNLLAPGGHLVIVERG  227 (484)
T ss_pred             ccceeehhhhhhhhccc-cCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence            24556666554432221 24445566999999999999999987553

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.47  E-value=5.3e-05  Score=54.52  Aligned_cols=49  Identities=24%  Similarity=0.405  Sum_probs=43.8

Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHH
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~  212 (224)
                      .++++|+|.+.++++|+  ..++-..+++.+++.|||||+|-+.+|+...+
T Consensus        44 ~dns~d~iyaeHvlEHl--t~~Eg~~alkechr~Lrp~G~LriAvPdl~f~   92 (185)
T COG4627          44 EDNSVDAIYAEHVLEHL--TYDEGTSALKECHRFLRPGGKLRIAVPDLKFL   92 (185)
T ss_pred             CCcchHHHHHHHHHHHH--hHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence            57899999999999999  77889999999999999999999998875433

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.46  E-value=0.0027  Score=51.19  Aligned_cols=118  Identities=19%  Similarity=0.231  Sum_probs=75.9

Q ss_pred             eEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCe
Q 027388           87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF  166 (224)
Q Consensus        87 ~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  166 (224)
                      +++|+.||.|.+...+...+...++++|+++..++..+.++.               -.++++|+.++.....   ...+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~---------------~~~~~~Di~~~~~~~~---~~~~   63 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP---------------NKLIEGDITKIDEKDF---IPDI   63 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC---------------CCCccCccccCchhhc---CCCC
Confidence            689999999999888876677678899999999999998875               1256778777654211   3579


Q ss_pred             eEEEEccccccc---------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC---------hHHHHHHhhhcccc
Q 027388          167 DICSCQFAMHYS---------WSTEARARRALANVSALLRPGGTFIGTMPD---------ANVIIKKLREEHFC  222 (224)
Q Consensus       167 D~i~~~~~l~~~---------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---------~~~~~~~~~~~gf~  222 (224)
                      |+++....-..+         .+....+...+.++.+.++|.=+++=.++.         ...+...|++.||.
T Consensus        64 D~l~~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~  137 (275)
T cd00315          64 DLLTGGFPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYN  137 (275)
T ss_pred             CEEEeCCCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcE
Confidence            999976522211         011222222333455556776444433332         34577778888864

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.46  E-value=0.015  Score=45.47  Aligned_cols=120  Identities=13%  Similarity=0.024  Sum_probs=69.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHh-hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-ccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~-~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~  160 (224)
                      -.+++||=+|=..- .++.++. ....+++.+|+++..++..++...          ..+.+++.++.|+.+ +|..   
T Consensus        43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~----------~~gl~i~~~~~DlR~~LP~~---  108 (243)
T PF01861_consen   43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAE----------EEGLPIEAVHYDLRDPLPEE---  108 (243)
T ss_dssp             STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHH----------HHT--EEEE---TTS---TT---
T ss_pred             ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHH----------HcCCceEEEEecccccCCHH---
Confidence            46899999985443 2222222 356789999999999999988876          223348899999874 3321   


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCe-EEEEEeCCh-------HHHHHHhhhcccc
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPDA-------NVIIKKLREEHFC  222 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG-~li~~~~~~-------~~~~~~~~~~gf~  222 (224)
                       -.+.||++++.-.-     +.+....|+.+....||..| ..++...+.       ..+.+.+.+.||+
T Consensus       109 -~~~~fD~f~TDPPy-----T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~  172 (243)
T PF01861_consen  109 -LRGKFDVFFTDPPY-----TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLV  172 (243)
T ss_dssp             -TSS-BSEEEE---S-----SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--E
T ss_pred             -HhcCCCEEEeCCCC-----CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcC
Confidence             25899999987653     44788999999999998755 555554332       2566677777764

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=97.39  E-value=0.0041  Score=52.16  Aligned_cols=118  Identities=14%  Similarity=0.118  Sum_probs=69.1

Q ss_pred             CCCeEEEecCCCchhHHHHHhh----------------cCCeEEEEeCChhHHHHHHHhccCCccccccccc----CCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA----------------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK----FSFP  143 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~----------------~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~----~~~~  143 (224)
                      +..+|+|+|||+|.+++.+...                ..-.++.-|+..+-....-+.+............    ...+
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~  142 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR  142 (386)
T ss_pred             cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence            3568999999999877654321                0135778887766655555555421000000000    0001


Q ss_pred             eeEE---eccccccccccccCCCCCeeEEEEccccccccCCH----------------------------------HHHH
Q 027388          144 ARLI---CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE----------------------------------ARAR  186 (224)
Q Consensus       144 v~~~---~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~----------------------------------~~~~  186 (224)
                      ..|+   .+.+-.-.+     +.++.+++++.+++||+-.-+                                  .|..
T Consensus       143 ~~f~~gvpGSFY~RLf-----P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~  217 (386)
T PLN02668        143 SYFAAGVPGSFYRRLF-----PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLA  217 (386)
T ss_pred             ceEEEecCcccccccc-----CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHH
Confidence            1122   233322222     689999999999999983100                                  1355


Q ss_pred             HHHHHHHhhccCCeEEEEEe
Q 027388          187 RALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       187 ~~l~~~~~~lk~gG~li~~~  206 (224)
                      .+|+.-.+-|.|||.+++..
T Consensus       218 ~FL~~Ra~ELvpGG~mvl~~  237 (386)
T PLN02668        218 GFLRARAQEMKRGGAMFLVC  237 (386)
T ss_pred             HHHHHHHHHhccCcEEEEEE
Confidence            67778888999999999875

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=97.37  E-value=0.0026  Score=52.65  Aligned_cols=119  Identities=13%  Similarity=0.117  Sum_probs=65.9

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh----------cC-------CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCe
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA----------KI-------GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA  144 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~----------~~-------~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v  144 (224)
                      ....-+|+|+||..|..++.+...          ..       -.++.-|+-.+-....-+.+.......  ......-+
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~--~~~~~~f~   91 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSL--KKFRNYFV   91 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHH--HHTTSEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhcc--CCCceEEE
Confidence            345578999999999988865431          11       268888976665555444443110000  00001112


Q ss_pred             eEEeccccccccccccCCCCCeeEEEEccccccccC------C-----------------------------HHHHHHHH
Q 027388          145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS------T-----------------------------EARARRAL  189 (224)
Q Consensus       145 ~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~------~-----------------------------~~~~~~~l  189 (224)
                      .-+.+.+-.-.+     +.++.|++++..++||+..      .                             ..|...+|
T Consensus        92 ~gvpgSFy~rLf-----P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL  166 (334)
T PF03492_consen   92 SGVPGSFYGRLF-----PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFL  166 (334)
T ss_dssp             EEEES-TTS--S------TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred             EecCchhhhccC-----CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence            234455543333     6899999999999999821      0                             12456678


Q ss_pred             HHHHhhccCCeEEEEEeC
Q 027388          190 ANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       190 ~~~~~~lk~gG~li~~~~  207 (224)
                      +.-.+-|+|||.+++..+
T Consensus       167 ~~Ra~ELv~GG~mvl~~~  184 (334)
T PF03492_consen  167 KARAEELVPGGRMVLTFL  184 (334)
T ss_dssp             HHHHHHEEEEEEEEEEEE
T ss_pred             HHhhheeccCcEEEEEEe
Confidence            888889999999998743

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.36  E-value=0.0015  Score=49.84  Aligned_cols=109  Identities=22%  Similarity=0.311  Sum_probs=55.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHh---h--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDK---A--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~---~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      ..+++.|+|+|.-.|+-+..++.   .  ..++|+|||+.-.........          ..++..+++++++|..+...
T Consensus        30 ~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e----------~hp~~~rI~~i~Gds~d~~~   99 (206)
T PF04989_consen   30 ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE----------SHPMSPRITFIQGDSIDPEI   99 (206)
T ss_dssp             HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG----------G----TTEEEEES-SSSTHH
T ss_pred             HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh----------hccccCceEEEECCCCCHHH
Confidence            34789999999999987776653   1  457999999965333222111          12445679999999765432


Q ss_pred             ccc---cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKV---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~---~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      -..   ........+|+-. +-|    +.....+.|+....++++|+++|+.
T Consensus       100 ~~~v~~~~~~~~~vlVilD-s~H----~~~hvl~eL~~y~plv~~G~Y~IVe  146 (206)
T PF04989_consen  100 VDQVRELASPPHPVLVILD-SSH----THEHVLAELEAYAPLVSPGSYLIVE  146 (206)
T ss_dssp             HHTSGSS----SSEEEEES-S--------SSHHHHHHHHHHT--TT-EEEET
T ss_pred             HHHHHHhhccCCceEEEEC-CCc----cHHHHHHHHHHhCccCCCCCEEEEE
Confidence            111   1112334455532 222    1245677888899999999999985

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=97.36  E-value=0.0015  Score=51.37  Aligned_cols=114  Identities=14%  Similarity=-0.046  Sum_probs=71.9

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ...+|||+|+|+|-.++.++......|+..|+..........+...+    ......+..+.....++.+......  ..
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~----~~l~~~g~~v~v~~L~Wg~~~~~~~--~~  159 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNN----IALNQLGGSVIVAILVWGNALDVSF--RL  159 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhh----hhhhhcCCceeEEEEecCCcccHhh--cc
Confidence            45679999999997776666557778888887665433322211100    0012233345666666554432222  12


Q ss_pred             CC-eeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          164 AP-FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       164 ~~-~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .. +|+|++..++..-    .....++..+..+|..+|++++.++
T Consensus       160 ~~~~DlilasDvvy~~----~~~e~Lv~tla~ll~~~~~i~l~~~  200 (248)
T KOG2793|consen  160 PNPFDLILASDVVYEE----ESFEGLVKTLAFLLAKDGTIFLAYP  200 (248)
T ss_pred             CCcccEEEEeeeeecC----CcchhHHHHHHHHHhcCCeEEEEEe
Confidence            33 9999999988753    5567788888888999887777765

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.29  E-value=0.0013  Score=49.07  Aligned_cols=106  Identities=23%  Similarity=0.261  Sum_probs=64.2

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-ccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLDK  158 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~  158 (224)
                      +.++.+|||+||..|.|+....+.  ..+.+.|||+-.         +.          + ...+.++++ |+.+-....
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~----------p-~~Ga~~i~~~dvtdp~~~~  126 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE----------P-PEGATIIQGNDVTDPETYR  126 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc----------C-CCCcccccccccCCHHHHH
Confidence            468899999999999999876654  456899999843         11          1 122455555 554421100


Q ss_pred             cc---CCCCCeeEEEEccccc--------cccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          159 VL---ADDAPFDICSCQFAMH--------YSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       159 ~~---~~~~~~D~i~~~~~l~--------~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      .+   .+..++|+|++.++-.        |. ...+-...++.-....++|+|.+++.+-.
T Consensus       127 ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~-~~i~LC~s~l~~al~~~~p~g~fvcK~w~  186 (232)
T KOG4589|consen  127 KIFEALPNRPVDVVLSDMAPNATGVRIRDHY-RSIELCDSALLFALTLLIPNGSFVCKLWD  186 (232)
T ss_pred             HHHHhCCCCcccEEEeccCCCCcCcchhhHH-HHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence            00   1568999999876421        10 01112233445556677899999987553

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.29  E-value=0.0021  Score=53.67  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=79.3

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHh--hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~--~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      +.++++.+|||+++..|+-+..++.  .+.+.+++.|.+...+...+.++...+.         .+......|..+++..
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv---------~ntiv~n~D~~ef~~~  307 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV---------TNTIVSNYDGREFPEK  307 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC---------CceEEEccCccccccc
Confidence            3567899999999999987776654  4677899999999999999988773321         2245566666655421


Q ss_pred             cccCCCCCeeEEEE----cc--ccc------cc------cCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          158 KVLADDAPFDICSC----QF--AMH------YS------WSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       158 ~~~~~~~~~D~i~~----~~--~l~------~~------~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .  ++ ++||-|+.    ++  ++.      ..      ..-..-+.++|.....++++||+|+.+|.
T Consensus       308 ~--~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC  372 (460)
T KOG1122|consen  308 E--FP-GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC  372 (460)
T ss_pred             c--cC-cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence            1  12 38999983    33  111      00      00012356788889999999999998865

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.0026  Score=45.59  Aligned_cols=113  Identities=15%  Similarity=0.141  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      +.++.++..+...+..+.+|+|.|.|+.....++.+...-+|+++++-.+..++-+.-        +.++.....|...|
T Consensus        59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~--------R~g~~k~trf~Rkd  130 (199)
T KOG4058|consen   59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAW--------RAGCAKSTRFRRKD  130 (199)
T ss_pred             HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHH--------HHhcccchhhhhhh
Confidence            3344444445556668999999999999998877676678899999988887776644        45667778888888


Q ss_pred             ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +-.+++       ..|..++...+-       .-+..+-..+..-|..+..++-.
T Consensus       131 lwK~dl-------~dy~~vviFgae-------s~m~dLe~KL~~E~p~nt~vvac  171 (199)
T KOG4058|consen  131 LWKVDL-------RDYRNVVIFGAE-------SVMPDLEDKLRTELPANTRVVAC  171 (199)
T ss_pred             hhhccc-------cccceEEEeehH-------HHHhhhHHHHHhhCcCCCeEEEE
Confidence            877665       233333333321       22334445566677778776654

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.27  E-value=0.0023  Score=48.41  Aligned_cols=120  Identities=13%  Similarity=0.139  Sum_probs=68.0

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCe-EEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ..-.+.|||||-|.++..++...... ++|.++--..-+..+.++.......  ..+.-.|+.+...+...+...  .+.
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~--a~~~~~ni~vlr~namk~lpn--~f~  135 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTS--AEGQYPNISVLRTNAMKFLPN--FFE  135 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccc--cccccccceeeeccchhhccc--hhh
Confidence            44579999999999999998665554 5699999888888887765322111  011123355555554433210  012


Q ss_pred             CCCeeEEEEccccccccC----CHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          163 DAPFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~----~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .++.+-++..+---|+..    ..-.....+.+..-+|++||.++..+.
T Consensus       136 kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD  184 (249)
T KOG3115|consen  136 KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD  184 (249)
T ss_pred             hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence            233333332221111100    000124567788889999999987764

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.27  E-value=0.0019  Score=52.51  Aligned_cols=90  Identities=22%  Similarity=0.241  Sum_probs=62.1

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      +..++..+...++..++|.--|.|+++..+++. ..++++|+|-++.+++.+++++.          ....++.+++.++
T Consensus         9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~----------~~~~r~~~~~~~F   78 (310)
T PF01795_consen    9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK----------KFDDRFIFIHGNF   78 (310)
T ss_dssp             HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC----------CCCTTEEEEES-G
T ss_pred             HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh----------hccceEEEEeccH
Confidence            344566666778889999999999999999865 44899999999999999999887          2366789999998


Q ss_pred             cccccccccC-CCCCeeEEEEc
Q 027388          152 YEVHLDKVLA-DDAPFDICSCQ  172 (224)
Q Consensus       152 ~~~~~~~~~~-~~~~~D~i~~~  172 (224)
                      .++....... ....+|.|+..
T Consensus        79 ~~l~~~l~~~~~~~~~dgiL~D  100 (310)
T PF01795_consen   79 SNLDEYLKELNGINKVDGILFD  100 (310)
T ss_dssp             GGHHHHHHHTTTTS-EEEEEEE
T ss_pred             HHHHHHHHHccCCCccCEEEEc
Confidence            8765321111 34688988854

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.0095  Score=45.13  Aligned_cols=106  Identities=14%  Similarity=0.115  Sum_probs=72.5

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc-ccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~  157 (224)
                      ..+.++.+||=+|+.+|.....+..- +.+.+++|+.|+.+.+..-..+..           -.|+.-+..|+..= ...
T Consensus        72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----------R~Ni~PIL~DA~~P~~Y~  140 (231)
T COG1889          72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----------RPNIIPILEDARKPEKYR  140 (231)
T ss_pred             CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----------CCCceeeecccCCcHHhh
Confidence            35678999999999999888877653 457899999999877665544432           23577788887531 111


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .   --+.+|+|+..-+-      .+...-+..+....|++||.+++.
T Consensus       141 ~---~Ve~VDviy~DVAQ------p~Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         141 H---LVEKVDVIYQDVAQ------PNQAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             h---hcccccEEEEecCC------chHHHHHHHHHHHhcccCCeEEEE
Confidence            1   13679999865432      233344567788899999976664

>PRK10742 putative methyltransferase; Provisional

Probab=97.15  E-value=0.0018  Score=50.87  Aligned_cols=94  Identities=9%  Similarity=-0.067  Sum_probs=63.9

Q ss_pred             HHHHhhcCCC--eEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccccc-CCCCeeEEeccccc
Q 027388           77 LVQLYARRGD--VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCYE  153 (224)
Q Consensus        77 ~~~~~~~~~~--~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~  153 (224)
                      +....++++.  +|||+-+|.|+.++.++..+. +|+++|-++......+..+..... +.+... +..+++++++|..+
T Consensus        79 ~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~-~~~~~~~~~~ri~l~~~da~~  156 (250)
T PRK10742         79 AKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYA-DAEIGGWLQERLQLIHASSLT  156 (250)
T ss_pred             HHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhh-ccccchhhhceEEEEeCcHHH
Confidence            3344455666  899999999999999886654 699999999998888877662100 000011 22468899999876


Q ss_pred             cccccccCCCCCeeEEEEccccc
Q 027388          154 VHLDKVLADDAPFDICSCQFAMH  176 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~  176 (224)
                      ....    ....||+|+..-.+.
T Consensus       157 ~L~~----~~~~fDVVYlDPMfp  175 (250)
T PRK10742        157 ALTD----ITPRPQVVYLDPMFP  175 (250)
T ss_pred             HHhh----CCCCCcEEEECCCCC
Confidence            5431    234799999765443

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.14  E-value=0.011  Score=48.81  Aligned_cols=120  Identities=22%  Similarity=0.207  Sum_probs=74.6

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh-c----CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA-K----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~----~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      +.+.++.+|||+++..|.-+.++++. .    .+.+++-|.+...+....+.....         ...++.+...++...
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l---------~~~~~~v~~~~~~~~  221 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL---------PSPNLLVTNHDASLF  221 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc---------CCcceeeecccceec
Confidence            45678999999999999999888764 2    237899999998887777665421         122233333333332


Q ss_pred             cccc---c-cCCCCCeeEEEEcc------ccccc---cC----C------HHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          155 HLDK---V-LADDAPFDICSCQF------AMHYS---WS----T------EARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       155 ~~~~---~-~~~~~~~D~i~~~~------~l~~~---~~----~------~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      +...   + ......||-|+|.-      .+...   |.    .      ..-+..++.+-.++||+||.++.+|..
T Consensus       222 p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS  298 (375)
T KOG2198|consen  222 PNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS  298 (375)
T ss_pred             cccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence            2110   0 01235788887531      11100   00    0      012467889999999999999998763

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.015  Score=45.43  Aligned_cols=113  Identities=18%  Similarity=0.210  Sum_probs=76.8

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      ...+.+++|+|+|+..-+..++..     ...+++.+|+|...++...+.+.        ..-....+.-+++|.+.- +
T Consensus        76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~--------~~y~~l~v~~l~~~~~~~-L  146 (321)
T COG4301          76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAIL--------REYPGLEVNALCGDYELA-L  146 (321)
T ss_pred             hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHH--------HhCCCCeEeehhhhHHHH-H
Confidence            346889999999999877766543     23579999999999876544443        112233466677776532 2


Q ss_pred             ccccCCCCCeeEEE-EccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          157 DKVLADDAPFDICS-CQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       157 ~~~~~~~~~~D~i~-~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ...  +..+--+++ ....+..+  ++.+...++..+...++||-.+++.+.
T Consensus       147 a~~--~~~~~Rl~~flGStlGN~--tp~e~~~Fl~~l~~a~~pGd~~LlGvD  194 (321)
T COG4301         147 AEL--PRGGRRLFVFLGSTLGNL--TPGECAVFLTQLRGALRPGDYFLLGVD  194 (321)
T ss_pred             hcc--cCCCeEEEEEecccccCC--ChHHHHHHHHHHHhcCCCcceEEEecc
Confidence            111  233334443 34467777  778899999999999999999888643

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.09  E-value=0.0039  Score=50.09  Aligned_cols=90  Identities=18%  Similarity=0.185  Sum_probs=68.2

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (224)
                      .+...+..+.+.++...+|.--|.|+++..++...  .++++++|-++.+++.|++++.          ....++.+++.
T Consensus        11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~----------~~~~r~~~v~~   80 (314)
T COG0275          11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK----------EFDGRVTLVHG   80 (314)
T ss_pred             HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh----------ccCCcEEEEeC
Confidence            35556777777888999999999999999998764  3679999999999999999987          33567889998


Q ss_pred             cccccccccccCCCCCeeEEEE
Q 027388          150 DCYEVHLDKVLADDAPFDICSC  171 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~D~i~~  171 (224)
                      ++.++...........+|-|+.
T Consensus        81 ~F~~l~~~l~~~~i~~vDGiL~  102 (314)
T COG0275          81 NFANLAEALKELGIGKVDGILL  102 (314)
T ss_pred             cHHHHHHHHHhcCCCceeEEEE
Confidence            8776543211112457777764

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.05  E-value=0.0013  Score=56.20  Aligned_cols=99  Identities=16%  Similarity=0.169  Sum_probs=62.3

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEe--CChhHHHHHHHhccCCcccccccccCCCCeeEEecccc-cccccccc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGID--IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EVHLDKVL  160 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD--~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~  160 (224)
                      .-+.|+|+.+|.|+++..|.... ..|--|=  ..++.+...-.+--               +- ..-|+. .++.    
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~~-VWVMNVVP~~~~ntL~vIydRGL---------------IG-~yhDWCE~fsT----  423 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDDP-VWVMNVVPVSGPNTLPVIYDRGL---------------IG-VYHDWCEAFST----  423 (506)
T ss_pred             ceeeeeeecccccHHHHHhccCC-ceEEEecccCCCCcchhhhhccc---------------ch-hccchhhccCC----
Confidence            34679999999999999986433 2222221  22223333332211               11 122322 2322    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       =+..||+|.+.+++... ...-++..++-++-|+|+|||.++|.
T Consensus       424 -YPRTYDLlHA~~lfs~~-~~rC~~~~illEmDRILRP~G~~iiR  466 (506)
T PF03141_consen  424 -YPRTYDLLHADGLFSLY-KDRCEMEDILLEMDRILRPGGWVIIR  466 (506)
T ss_pred             -CCcchhheehhhhhhhh-cccccHHHHHHHhHhhcCCCceEEEe
Confidence             25799999999887664 23346788999999999999999985

; GO: 0008168 methyltransferase activity

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=96.72  E-value=0.0011  Score=45.06  Aligned_cols=43  Identities=23%  Similarity=0.429  Sum_probs=32.2

Q ss_pred             CeeEEEEcccccccc--CCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          165 PFDICSCQFAMHYSW--STEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~--~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      +||+|+|..+.-|+-  -..+.+..+++++.+.|+|||.|++...
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ   45 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ   45 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            489999988755441  1455788999999999999999999743

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.72  E-value=0.013  Score=48.28  Aligned_cols=95  Identities=19%  Similarity=0.156  Sum_probs=65.4

Q ss_pred             hhcCCCeEEEecCC-CchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG-~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+|+=+|+| -|+++.++++....+|+++|.|++-.+.|++...               ..++... ....... 
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA---------------d~~i~~~-~~~~~~~-  225 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA---------------DHVINSS-DSDALEA-  225 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC---------------cEEEEcC-CchhhHH-
Confidence            35678888888886 4678888887666899999999999999998755               2333332 1111110 


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ..+.||+|+..-.           ...+....+.|++||.+++.
T Consensus       226 --~~~~~d~ii~tv~-----------~~~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         226 --VKEIADAIIDTVG-----------PATLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             --hHhhCcEEEECCC-----------hhhHHHHHHHHhcCCEEEEE
Confidence              1233999986543           23566778888999988864

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.64  E-value=0.025  Score=42.71  Aligned_cols=112  Identities=21%  Similarity=0.157  Sum_probs=62.6

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHH----HHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSI----EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~----~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      .++++.+|+|+=.|.|.++.-+...  ..+.|+++-+.+...    +..+.+...       ....-.|++.+-.+...+
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~-------~e~~~aN~e~~~~~~~A~  117 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAA-------REPVYANVEVIGKPLVAL  117 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhh-------hhhhhhhhhhhCCccccc
Confidence            3478999999999999998877643  334677665544311    101111000       011122344444444433


Q ss_pred             ccccccCCCCCeeEEEEccccccc---cCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYS---WSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~---~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .      .....|+++.+...|-+   .-......++...+++.|||||++++.
T Consensus       118 ~------~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~  165 (238)
T COG4798         118 G------APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE  165 (238)
T ss_pred             C------CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence            3      23455655543321111   112345788999999999999998875

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=96.63  E-value=0.0013  Score=52.23  Aligned_cols=113  Identities=14%  Similarity=0.040  Sum_probs=64.6

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHH-HhccCCcccccccccCCCCeeEEec---cccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCR-TRYNGDADHHQRRKKFSFPARLICG---DCYEVHLD  157 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~-~~~~~~~~~~~~~~~~~~~v~~~~~---d~~~~~~~  157 (224)
                      ...+++|||+|||.|...+.....+...++..|.+...++.-. .+..-+-...........-....+.   |....   
T Consensus       114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~---  190 (282)
T KOG2920|consen  114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFN---  190 (282)
T ss_pred             EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhh---
Confidence            4568999999999999888877666678899999988773211 1111000000000000000111111   21100   


Q ss_pred             cccCCCC--CeeEEEEccccccccCCHHHHHHH-HHHHHhhccCCeEEEEE
Q 027388          158 KVLADDA--PFDICSCQFAMHYSWSTEARARRA-LANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~--~~D~i~~~~~l~~~~~~~~~~~~~-l~~~~~~lk~gG~li~~  205 (224)
                          ..+  .||+|.++..+...    +....+ ......+++++|++++.
T Consensus       191 ----~t~~~~ydlIlsSetiy~~----~~~~~~~~~~r~~l~~~D~~~~~a  233 (282)
T KOG2920|consen  191 ----HTERTHYDLILSSETIYSI----DSLAVLYLLHRPCLLKTDGVFYVA  233 (282)
T ss_pred             ----hccccchhhhhhhhhhhCc----chhhhhHhhhhhhcCCccchhhhh
Confidence                123  89999998887654    344444 66677778889987754

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.55  E-value=0.013  Score=45.28  Aligned_cols=129  Identities=14%  Similarity=0.156  Sum_probs=73.2

Q ss_pred             HHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHh---hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCCh
Q 027388           42 KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY---ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAE  117 (224)
Q Consensus        42 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~  117 (224)
                      -++..|.-..-+.+..+-.+|+..=..+.+++..++....   ..++.++||||.|.--.---+-.+ ..-+++|.|+++
T Consensus        33 lL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~  112 (292)
T COG3129          33 LLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDS  112 (292)
T ss_pred             HHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCH
Confidence            3445565333444444445555444445555555554331   135568999988764221111111 334789999999


Q ss_pred             hHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcccccc
Q 027388          118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY  177 (224)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~  177 (224)
                      ..++.|+..+..+       ..+...++.....-..--+...+...+.||+.+|+-.+|-
T Consensus       113 ~sl~sA~~ii~~N-------~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~  165 (292)
T COG3129         113 QSLSSAKAIISAN-------PGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD  165 (292)
T ss_pred             HHHHHHHHHHHcC-------cchhhheeEEeccCccccccccccccceeeeEecCCCcch
Confidence            9999999998743       1333345544432222222333324789999999988873

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.49  E-value=0.019  Score=48.31  Aligned_cols=105  Identities=16%  Similarity=0.141  Sum_probs=74.2

Q ss_pred             CCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCC-CeeEEecccccccccccc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVL  160 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~  160 (224)
                      .+.++||.=+|+|.=++.++..  +..+++.-|+|+..++..++++..        +++.. .+++.+.|+..+-..   
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~--------N~~~~~~~~v~~~DAn~ll~~---  117 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL--------NGLEDERIEVSNMDANVLLYS---  117 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH--------CT-SGCCEEEEES-HHHHHCH---
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh--------ccccCceEEEehhhHHHHhhh---
Confidence            4568999999999988888765  456899999999999999999763        34444 578888888765421   


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                       ....||+|=..- +       =.+..++....+.++.||.|.++.-+
T Consensus       118 -~~~~fD~IDlDP-f-------GSp~pfldsA~~~v~~gGll~vTaTD  156 (377)
T PF02005_consen  118 -RQERFDVIDLDP-F-------GSPAPFLDSALQAVKDGGLLCVTATD  156 (377)
T ss_dssp             -STT-EEEEEE---S-------S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred             -ccccCCEEEeCC-C-------CCccHhHHHHHHHhhcCCEEEEeccc
Confidence             368999996432 1       23567899999999999999998544

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.46  E-value=0.0048  Score=47.13  Aligned_cols=142  Identities=15%  Similarity=0.157  Sum_probs=75.1

Q ss_pred             ehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCCccc--cc----
Q 027388           65 HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADH--HQ----  135 (224)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~~~~--~~----  135 (224)
                      ..+...+.+++.+..+....+-++.|-+||.|.++-.+.-.   ....+++.|+++.+++.|++++.-....  +.    
T Consensus        32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e  111 (246)
T PF11599_consen   32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREE  111 (246)
T ss_dssp             -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence            34444455555444443446678999999999776655432   4567999999999999999998643221  00    


Q ss_pred             ---------c------------------cccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccc--cC---CHH
Q 027388          136 ---------R------------------RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS--WS---TEA  183 (224)
Q Consensus       136 ---------~------------------~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~--~~---~~~  183 (224)
                               +                  ..+........+.|+.+-............|+|+.......+  |.   +..
T Consensus       112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~  191 (246)
T PF11599_consen  112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGG  191 (246)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HH
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCC
Confidence                     0                  011122345666666541110000134557999977544433  11   344


Q ss_pred             HHHHHHHHHHhhccCCeEEEEEe
Q 027388          184 RARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       184 ~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      -...+|..+..+|-.++++.++.
T Consensus       192 p~~~ml~~l~~vLp~~sVV~v~~  214 (246)
T PF11599_consen  192 PVAQMLNSLAPVLPERSVVAVSD  214 (246)
T ss_dssp             HHHHHHHHHHCCS-TT-EEEEEE
T ss_pred             cHHHHHHHHHhhCCCCcEEEEec
Confidence            56789999999996667777753

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=96.45  E-value=0.056  Score=43.23  Aligned_cols=115  Identities=14%  Similarity=-0.005  Sum_probs=72.5

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc---
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL---  160 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---  160 (224)
                      ....|+.+|||--.-...+.......++=+|.-. .++.-++.+...+      .....+.+++.+|+. ..+....   
T Consensus        81 g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~------~~~~~~~~~v~~Dl~-~~w~~~L~~~  152 (260)
T TIGR00027        81 GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELG------AEPPAHRRAVPVDLR-QDWPAALAAA  152 (260)
T ss_pred             CCcEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcC------CCCCCceEEeccCch-hhHHHHHHhC
Confidence            3457999999987666555222223455555444 3444444443110      113456788888886 2221111   


Q ss_pred             -CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 -ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 -~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                       +....--++++-+++.|+  +.+...++++.+.+...||+.+++...+
T Consensus       153 gfd~~~ptl~i~EGvl~YL--~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       153 GFDPTAPTAWLWEGLLMYL--TEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             CCCCCCCeeeeecchhhcC--CHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence             122345577778888888  7888999999999999999999998644

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.41  E-value=0.026  Score=45.29  Aligned_cols=118  Identities=19%  Similarity=0.132  Sum_probs=80.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++++|=||.|.|......+++ ....+..+|+....++..++-+...+-     .--+.++.+..+|-..+-.. .  
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~-----gy~~~~v~l~iGDG~~fl~~-~--  191 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLAC-----GYEGKKVKLLIGDGFLFLED-L--  191 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhc-----ccCCCceEEEeccHHHHHHH-h--
Confidence            46889999999999999887765 456788999999999999888752110     01134577778875443211 0  


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ..+.||+|+.-..=--...-..-...++..+.+.||+||+++.....
T Consensus       192 ~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec  238 (337)
T KOG1562|consen  192 KENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC  238 (337)
T ss_pred             ccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence            36899999964321000000123567889999999999999987543

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.40  E-value=0.006  Score=51.41  Aligned_cols=61  Identities=18%  Similarity=0.158  Sum_probs=50.2

Q ss_pred             eEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        87 ~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      -+||||+|||-++......+...+++++.=..|.+.|++...        ..++..+++++...-.++.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~--------kng~SdkI~vInkrStev~  129 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMH--------KNGMSDKINVINKRSTEVK  129 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHh--------cCCCccceeeeccccceee
Confidence            589999999988887776777789999999999999999987        4577778888776655544

>PRK11524 putative methyltransferase; Provisional

Probab=96.36  E-value=0.013  Score=47.52  Aligned_cols=47  Identities=28%  Similarity=0.260  Sum_probs=40.6

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ...+++.|||.-||+|..+... .....+++|+|++++.++.|++++.
T Consensus       205 ~S~~GD~VLDPF~GSGTT~~AA-~~lgR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        205 SSNPGDIVLDPFAGSFTTGAVA-KASGRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             hCCCCCEEEECCCCCcHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHH
Confidence            4578999999999999777754 4567799999999999999999975

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=96.36  E-value=0.04  Score=45.36  Aligned_cols=116  Identities=17%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             EEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCee
Q 027388           88 VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD  167 (224)
Q Consensus        88 iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D  167 (224)
                      |+|+-||.|.+..-+...++..+.++|+++..++..+.++.            .   .++++|+.++....    ...+|
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~------------~---~~~~~Di~~~~~~~----~~~~d   61 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG------------N---KVPFGDITKISPSD----IPDFD   61 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC------------C---CCCccChhhhhhhh----CCCcC
Confidence            58999999999988876676667799999999999988865            1   34567777665321    23589


Q ss_pred             EEEEccccccc---------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC---------hHHHHHHhhhcccc
Q 027388          168 ICSCQFAMHYS---------WSTEARARRALANVSALLRPGGTFIGTMPD---------ANVIIKKLREEHFC  222 (224)
Q Consensus       168 ~i~~~~~l~~~---------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---------~~~~~~~~~~~gf~  222 (224)
                      +++....-.-+         .+....+...+-++.+.++|.-+++=.++.         ...+...|++.||.
T Consensus        62 vl~gg~PCq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~  134 (315)
T TIGR00675        62 ILLGGFPCQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYK  134 (315)
T ss_pred             EEEecCCCcccchhcccCCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCE
Confidence            99855321111         011112222233444555775333322321         35567777787864

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.31  E-value=0.015  Score=44.96  Aligned_cols=45  Identities=29%  Similarity=0.398  Sum_probs=34.1

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHH
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT  125 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~  125 (224)
                      ....++..|||.-||+|..+.... ....+++|+|+++..++.|++
T Consensus       187 ~~t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  187 ASTNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHS-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred             hhhccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence            346789999999999998777654 566689999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PHA01634 hypothetical protein

Probab=96.28  E-value=0.012  Score=41.23  Aligned_cols=45  Identities=7%  Similarity=-0.000  Sum_probs=40.9

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      .+++|+|||++-|.-++.++-.+...|+++++++...+..+.+++
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k   72 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA   72 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence            689999999999999998887788899999999999999988776

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.26  E-value=0.028  Score=46.12  Aligned_cols=116  Identities=18%  Similarity=0.290  Sum_probs=74.0

Q ss_pred             eEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCe
Q 027388           87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF  166 (224)
Q Consensus        87 ~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  166 (224)
                      +++|+-||-|.+...+...++..+.++|+++...+..+.++.                ....+|+.++.....  +. .+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~----------------~~~~~Di~~~~~~~l--~~-~~   62 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP----------------EVICGDITEIDPSDL--PK-DV   62 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT----------------EEEESHGGGCHHHHH--HH-T-
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc----------------ccccccccccccccc--cc-cc
Confidence            689999999999998877777778899999999999888753                667888887764322  22 69


Q ss_pred             eEEEEccccccc--------c-CCHHHHHHHHHHHHhhccCCeEEEEEeCC---------hHHHHHHhhhccc
Q 027388          167 DICSCQFAMHYS--------W-STEARARRALANVSALLRPGGTFIGTMPD---------ANVIIKKLREEHF  221 (224)
Q Consensus       167 D~i~~~~~l~~~--------~-~~~~~~~~~l~~~~~~lk~gG~li~~~~~---------~~~~~~~~~~~gf  221 (224)
                      |+++....-+-+        . +....+...+-++.+.++|.-+|+=.+++         ...+.+.|.+.||
T Consensus        63 D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY  135 (335)
T PF00145_consen   63 DLLIGGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGY  135 (335)
T ss_dssp             SEEEEE---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTE
T ss_pred             eEEEeccCCceEeccccccccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccce
Confidence            999965421111        0 11111233344555667886555534442         4677788888886

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.15  E-value=0.013  Score=39.69  Aligned_cols=47  Identities=19%  Similarity=0.311  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHhh-cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCCh
Q 027388           70 NNWIKSVLVQLYA-RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE  117 (224)
Q Consensus        70 ~~~~~~~~~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~  117 (224)
                      ..|+..+...... .+....+|||||+|-+.--|...+. .=+|+|.-.
T Consensus        43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~   90 (112)
T PF07757_consen   43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR   90 (112)
T ss_pred             HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence            3444444443322 2456799999999966555544443 667888654

; GO: 0008168 methyltransferase activity

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=96.00  E-value=0.021  Score=47.60  Aligned_cols=127  Identities=13%  Similarity=0.098  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhcc---CCcccccccccCCCCe
Q 027388           69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYN---GDADHHQRRKKFSFPA  144 (224)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~---~~~~~~~~~~~~~~~v  144 (224)
                      ....+.++++.+..++++...|+|.|-|.....++.. ....-+|+++....-+.+.....   .......+.   ...+
T Consensus       177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~---~~~~  253 (419)
T KOG3924|consen  177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK---PNKI  253 (419)
T ss_pred             hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC---cCce
Confidence            3455667788888899999999999999988877654 34456688877665444433322   111111001   3346


Q ss_pred             eEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       145 ~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .++++++..-.....  -....++|+++.+..     .+++..-+.++..-|++|..++-.
T Consensus       254 ~~i~gsf~~~~~v~e--I~~eatvi~vNN~~F-----dp~L~lr~~eil~~ck~gtrIiS~  307 (419)
T KOG3924|consen  254 ETIHGSFLDPKRVTE--IQTEATVIFVNNVAF-----DPELKLRSKEILQKCKDGTRIISS  307 (419)
T ss_pred             eecccccCCHHHHHH--HhhcceEEEEecccC-----CHHHHHhhHHHHhhCCCcceEecc
Confidence            778888765332221  146889999988763     255555666999999999998854

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=95.97  E-value=0.045  Score=42.71  Aligned_cols=104  Identities=18%  Similarity=0.211  Sum_probs=66.9

Q ss_pred             HHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhH----HHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           78 VQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGS----IEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        78 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      .+++++++.+||=+|+++|.....+...  ...-|++|+.|.-.    +..|+++-               |+.-+.-|+
T Consensus       150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt---------------NiiPIiEDA  214 (317)
T KOG1596|consen  150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT---------------NIIPIIEDA  214 (317)
T ss_pred             cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC---------------CceeeeccC
Confidence            3557789999999999999876665542  44579999998753    44455443               366666676


Q ss_pred             cccc-cccccCCCCCeeEEEEccccccccCCHHHH-HHHHHHHHhhccCCeEEEEEe
Q 027388          152 YEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARA-RRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       152 ~~~~-~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~-~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ..-. .-.   .-.-+|+|++.-+       ++++ ..+.-+....||+||.++++.
T Consensus       215 rhP~KYRm---lVgmVDvIFaDva-------qpdq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  215 RHPAKYRM---LVGMVDVIFADVA-------QPDQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             CCchheee---eeeeEEEEeccCC-------CchhhhhhhhhhhhhhccCCeEEEEE
Confidence            4211 000   1245677775432       2333 334457788899999999863

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.91  E-value=0.066  Score=48.66  Aligned_cols=132  Identities=17%  Similarity=0.137  Sum_probs=75.8

Q ss_pred             CCCeEEEecCCCchhHHHHHhhc-------------CCeEEEEeCCh---hHHHHHHHhccCCcccccc--------ccc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAK-------------IGYYVGIDIAE---GSIEDCRTRYNGDADHHQR--------RKK  139 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~-------------~~~~~gvD~s~---~~~~~a~~~~~~~~~~~~~--------~~~  139 (224)
                      +.-+|+|+|-|+|.+...+.+..             .-+++.+|..+   ..+..+.+.........+.        ..+
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            44789999999999766554321             12678999543   3333332221110000000        001


Q ss_pred             --------CCCCeeEEeccccccccccccCCCCCeeEEEEccc-cccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH
Q 027388          140 --------FSFPARLICGDCYEVHLDKVLADDAPFDICSCQFA-MHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (224)
Q Consensus       140 --------~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~-l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~  210 (224)
                              ....+++..+|+.+.-..    ....+|+++.... ....  ++-=-..+|+.+.+++++||.|.=.+ ...
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~----~~~~~d~~~lD~FsP~~n--p~~W~~~~~~~l~~~~~~~~~~~t~t-~a~  209 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQ----LDARADAWFLDGFAPAKN--PDMWSPNLFNALARLARPGATLATFT-SAG  209 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHh----ccccccEEEeCCCCCccC--hhhccHHHHHHHHHHhCCCCEEEEee-hHH
Confidence                    011345667787643210    1256999997642 1111  11112679999999999999887444 557


Q ss_pred             HHHHHhhhcccc
Q 027388          211 VIIKKLREEHFC  222 (224)
Q Consensus       211 ~~~~~~~~~gf~  222 (224)
                      .++..|.++||.
T Consensus       210 ~vr~~l~~~GF~  221 (662)
T PRK01747        210 FVRRGLQEAGFT  221 (662)
T ss_pred             HHHHHHHHcCCe
Confidence            889999999995

>PRK13699 putative methylase; Provisional

Probab=95.89  E-value=0.032  Score=43.67  Aligned_cols=47  Identities=21%  Similarity=0.319  Sum_probs=40.0

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ...++..|||.-||+|..+.... ....+++|+|+++...+.+.+++.
T Consensus       160 ~s~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~  206 (227)
T PRK13699        160 FTHPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLA  206 (227)
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHH
Confidence            35688999999999998777654 556689999999999999999976

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=95.88  E-value=0.066  Score=45.66  Aligned_cols=111  Identities=14%  Similarity=0.094  Sum_probs=66.8

Q ss_pred             cCCCeEEEecCCCch--hHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-ccccccccc
Q 027388           83 RRGDVVLDLACGKGG--DLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLDK  158 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~--~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~  158 (224)
                      ..++.++|+|.|.|.  ++...+.. ....+..||.|..|.....+.+.. +..      ..  -.++.. .+.+.-++ 
T Consensus       199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~------~g--~~~v~~~~~~r~~~p-  268 (491)
T KOG2539|consen  199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSH------IG--EPIVRKLVFHRQRLP-  268 (491)
T ss_pred             cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhh------cC--chhccccchhcccCC-
Confidence            356778888887664  33333322 245788999999999999888763 000      01  011111 11111111 


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHH-HHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALA-NVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~-~~~~~lk~gG~li~~  205 (224)
                       ......||+|++.+.++++.+.. ....+.+ .+++..++|+.+++.
T Consensus       269 -i~~~~~yDlvi~ah~l~~~~s~~-~R~~v~~s~~r~~~r~g~~lViI  314 (491)
T KOG2539|consen  269 -IDIKNGYDLVICAHKLHELGSKF-SRLDVPESLWRKTDRSGYFLVII  314 (491)
T ss_pred             -CCcccceeeEEeeeeeeccCCch-hhhhhhHHHHHhccCCCceEEEE
Confidence             11357799999999999886555 4444444 455566888888775

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.83  E-value=0.072  Score=45.02  Aligned_cols=111  Identities=21%  Similarity=0.180  Sum_probs=66.5

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc-ccccccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD-CYEVHLD  157 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d-~~~~~~~  157 (224)
                      ...++.+||.+|||. |..+..+++.... .++++|.++...+.+++...            ...+.+...+ +... ..
T Consensus       181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~------------~~vi~~~~~~~~~~~-l~  247 (386)
T cd08283         181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG------------AETINFEEVDDVVEA-LR  247 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC------------cEEEcCCcchHHHHH-HH
Confidence            345778999999988 7788888766543 69999999999998887532            0001111111 1000 00


Q ss_pred             cccCCCCCeeEEEEccc-----------cccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFA-----------MHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~-----------l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ... ....+|+|+-.-.           +.+++....+....+..+.+.++++|.+++.
T Consensus       248 ~~~-~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  305 (386)
T cd08283         248 ELT-GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII  305 (386)
T ss_pred             HHc-CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence            000 2346898876421           1111112233456788899999999998864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.78  E-value=0.028  Score=44.65  Aligned_cols=59  Identities=19%  Similarity=0.187  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHh-hcCCCeEEEecCCCchhHHHHHhh---------cCCeEEEEeCChhHHHHHHHhccC
Q 027388           71 NWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKA---------KIGYYVGIDIAEGSIEDCRTRYNG  129 (224)
Q Consensus        71 ~~~~~~~~~~~-~~~~~~iLDiGcG~G~~~~~l~~~---------~~~~~~gvD~s~~~~~~a~~~~~~  129 (224)
                      .|+........ +..+.+|+|+|+|+|.++..++..         ...+++.||+|+.+.+.-++++..
T Consensus         4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen    4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            34444555442 333579999999999999887752         135799999999999999998874

; PDB: 4F3N_A 1ZKD_B.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.70  E-value=0.15  Score=42.31  Aligned_cols=121  Identities=17%  Similarity=0.202  Sum_probs=80.4

Q ss_pred             CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      ..+++|+-||.|.+..-+...++.-+.++|+++..++.-+.+...              ..+...|+.+......  ...
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~--------------~~~~~~di~~~~~~~~--~~~   66 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH--------------GDIILGDIKELDGEAL--RKS   66 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC--------------CceeechHhhcChhhc--ccc
Confidence            458999999999999888766777788999999999999988761              3566677766554211  111


Q ss_pred             CeeEEEEccccccc---------cCCHHHHHHHHHHHHhhccCCeEEEEE-eC--------ChHHHHHHhhhcccc
Q 027388          165 PFDICSCQFAMHYS---------WSTEARARRALANVSALLRPGGTFIGT-MP--------DANVIIKKLREEHFC  222 (224)
Q Consensus       165 ~~D~i~~~~~l~~~---------~~~~~~~~~~l~~~~~~lk~gG~li~~-~~--------~~~~~~~~~~~~gf~  222 (224)
                      .+|+++...--+.+         .++...+.-.+.++...++| -.+++. ++        ....+.+.|++.||.
T Consensus        67 ~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~  141 (328)
T COG0270          67 DVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG  141 (328)
T ss_pred             CCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence            78999965432222         11222233455667777788 455553 22        346778888888883

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=95.70  E-value=0.062  Score=44.48  Aligned_cols=61  Identities=8%  Similarity=0.011  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh---------cCCeEEEEeCChhHHHHHHHhccCC
Q 027388           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---------KIGYYVGIDIAEGSIEDCRTRYNGD  130 (224)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~---------~~~~~~gvD~s~~~~~~a~~~~~~~  130 (224)
                      ..|+..+++....+.+..++|||.|+|.++..++..         ...++..|++|+...+.-++++...
T Consensus        63 a~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          63 AEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            344444555554555678999999999988877652         2568999999999998888887743

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.58  E-value=0.026  Score=43.64  Aligned_cols=103  Identities=18%  Similarity=0.206  Sum_probs=66.8

Q ss_pred             CCeEEEecCCCchhHHHHHhhc------C----CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           85 GDVVLDLACGKGGDLIKWDKAK------I----GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~------~----~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      -.+++|+.+..|.|+..+.+.-      .    .++++||+-+                   +.++. .|.-+++|++..
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-------------------MaPI~-GV~qlq~DIT~~  101 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-------------------MAPIE-GVIQLQGDITSA  101 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-------------------CCccC-ceEEeecccCCH
Confidence            4689999999999998876531      1    1389999865                   12223 267778888764


Q ss_pred             ccccc---cCCCCCeeEEEEccc-----cccccC--CHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          155 HLDKV---LADDAPFDICSCQFA-----MHYSWS--TEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       155 ~~~~~---~~~~~~~D~i~~~~~-----l~~~~~--~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .....   .+..+..|+|+|.++     +|-+.+  ..+-+.++|.-...+|+|||.|+....
T Consensus       102 stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif  164 (294)
T KOG1099|consen  102 STAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF  164 (294)
T ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence            43211   124579999999874     443300  111234566667789999999996543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.54  E-value=0.12  Score=45.30  Aligned_cols=103  Identities=15%  Similarity=0.105  Sum_probs=63.9

Q ss_pred             cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc--------
Q 027388           83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--------  153 (224)
Q Consensus        83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~--------  153 (224)
                      .++.+|+=+|||. |..+...++.....|+++|.++..++.+++.-.                ++...+..+        
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA----------------~~v~i~~~e~~~~~~gy  226 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA----------------EFLELDFEEEGGSGDGY  226 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC----------------eEEEeccccccccccch
Confidence            3688999999998 556666666655689999999999999887422                221111110        


Q ss_pred             ---cccc------cc-cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          154 ---VHLD------KV-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       154 ---~~~~------~~-~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                         ....      .. ......+|+|+..-...    ....+..+.++..+.+||||+++..
T Consensus       227 a~~~s~~~~~~~~~~~~~~~~gaDVVIetag~p----g~~aP~lit~~~v~~mkpGgvIVdv  284 (509)
T PRK09424        227 AKVMSEEFIKAEMALFAEQAKEVDIIITTALIP----GKPAPKLITAEMVASMKPGSVIVDL  284 (509)
T ss_pred             hhhcchhHHHHHHHHHHhccCCCCEEEECCCCC----cccCcchHHHHHHHhcCCCCEEEEE
Confidence               0000      00 00115799998765431    1122334458999999999987754

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.41  E-value=0.046  Score=47.32  Aligned_cols=102  Identities=18%  Similarity=0.198  Sum_probs=73.3

Q ss_pred             CeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           86 DVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..|+=+|+|.|-+....++.     ...++++|+-++.++...+.+ +        ...+..+|+++.+|+.....    
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n--------~~~W~~~Vtii~~DMR~w~a----  435 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-N--------FECWDNRVTIISSDMRKWNA----  435 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-c--------hhhhcCeeEEEeccccccCC----
Confidence            45889999999877765542     234789999999999888763 3        34677789999999998874    


Q ss_pred             CCCCCeeEEEEccccccccCCHHH-HHHHHHHHHhhccCCeEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEAR-ARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~-~~~~l~~~~~~lk~gG~li~  204 (224)
                       +..+.|++++= .|.-+  +..+ -...|..+.+.|||+|+.|=
T Consensus       436 -p~eq~DI~VSE-LLGSF--GDNELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  436 -PREQADIIVSE-LLGSF--GDNELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             -chhhccchHHH-hhccc--cCccCCHHHHHHHHhhcCCCceEcc
Confidence             35899999842 22221  1111 23577888999999998774

>PRK13699 putative methylase; Provisional

Probab=95.34  E-value=0.072  Score=41.68  Aligned_cols=76  Identities=14%  Similarity=0.209  Sum_probs=47.9

Q ss_pred             eeEEeccccccccccccCCCCCeeEEEEcccccc----c-------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hH
Q 027388          144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY----S-------WSTEARARRALANVSALLRPGGTFIGTMPD--AN  210 (224)
Q Consensus       144 v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~----~-------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~  210 (224)
                      ++++++|..+.-. .  .+++++|+|+..--...    .       ....+-...++.++.|+|||||.+++-...  ..
T Consensus         2 ~~l~~gD~le~l~-~--lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~   78 (227)
T PRK13699          2 SRFILGNCIDVMA-R--FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVD   78 (227)
T ss_pred             CeEEechHHHHHH-h--CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHH
Confidence            3567777765411 0  15788999987642210    0       000122467889999999999988864332  45


Q ss_pred             HHHHHhhhcccc
Q 027388          211 VIIKKLREEHFC  222 (224)
Q Consensus       211 ~~~~~~~~~gf~  222 (224)
                      .+...+++.||.
T Consensus        79 ~~~~al~~~GF~   90 (227)
T PRK13699         79 RFMAAWKNAGFS   90 (227)
T ss_pred             HHHHHHHHCCCE
Confidence            677788888874

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=95.23  E-value=0.38  Score=36.38  Aligned_cols=105  Identities=13%  Similarity=0.155  Sum_probs=70.5

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      .++..|+|+|.-.|+-++..+..     ...+|+++|++-..+..+.....              .+.|+.++-.+....
T Consensus        68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p--------------~i~f~egss~dpai~  133 (237)
T COG3510          68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVP--------------DILFIEGSSTDPAIA  133 (237)
T ss_pred             cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCC--------------CeEEEeCCCCCHHHH
Confidence            47889999999888866655431     23589999999877665554433              488999886543211


Q ss_pred             cc--cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KV--LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~--~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .-  ....+.--+.+|..+-|++    +...+.++-+..+|..|.++++.
T Consensus       134 eqi~~~~~~y~kIfvilDsdHs~----~hvLAel~~~~pllsaG~Y~vVe  179 (237)
T COG3510         134 EQIRRLKNEYPKIFVILDSDHSM----EHVLAELKLLAPLLSAGDYLVVE  179 (237)
T ss_pred             HHHHHHhcCCCcEEEEecCCchH----HHHHHHHHHhhhHhhcCceEEEe
Confidence            00  0012222444555566654    77788899999999999999986

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=95.18  E-value=0.021  Score=41.74  Aligned_cols=45  Identities=22%  Similarity=0.368  Sum_probs=34.1

Q ss_pred             CCCeeEEEEcccccccc-------CCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          163 DAPFDICSCQFAMHYSW-------STEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~-------~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .+.||.+.|..+++|+=       -....-...+.++.++||+||.|++..|
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP  112 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP  112 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence            57899999998888760       0112235677889999999999999876

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=94.89  E-value=1.2  Score=35.29  Aligned_cols=111  Identities=17%  Similarity=0.134  Sum_probs=61.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHh---h---cCCeEEEEeCChh--------------------------HHHHHHHhccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDK---A---KIGYYVGIDIAEG--------------------------SIEDCRTRYNGD  130 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~---~---~~~~~~gvD~s~~--------------------------~~~~a~~~~~~~  130 (224)
                      .-+..|+|+||-.|..+..+..   .   ...++++.|-=+.                          ..+..++++...
T Consensus        73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~  152 (248)
T PF05711_consen   73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY  152 (248)
T ss_dssp             TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred             CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence            4567899999999976654322   1   2346888873111                          234444444421


Q ss_pred             cccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       131 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      +       ....+++++.+.+.+... ..  +...+-++....-++      +.....|..+...|.|||++++.-.+.
T Consensus       153 g-------l~~~~v~~vkG~F~dTLp-~~--p~~~IAll~lD~DlY------esT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  153 G-------LLDDNVRFVKGWFPDTLP-DA--PIERIALLHLDCDLY------ESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             T-------TSSTTEEEEES-HHHHCC-C---TT--EEEEEE---SH------HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             C-------CCcccEEEECCcchhhhc-cC--CCccEEEEEEeccch------HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence            1       124578999998865422 11  234555554443332      557889999999999999999987764

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.87  E-value=0.21  Score=41.36  Aligned_cols=96  Identities=15%  Similarity=0.083  Sum_probs=56.4

Q ss_pred             cCCCeEEEecCCC-chhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~-G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      .++.+||=+|||. |.++.++++... .+++++|.++..++.+++.-.            ..-+.....++.+...    
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa------------~~vi~~~~~~~~~~~~----  231 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA------------DKLVNPQNDDLDHYKA----  231 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC------------cEEecCCcccHHHHhc----
Confidence            4577888888754 555566665544 478999999999998876422            0000111111111111    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ..+.+|+|+-.-.      .    ...+....+.|++||.+++.
T Consensus       232 -~~g~~D~vid~~G------~----~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        232 -EKGYFDVSFEVSG------H----PSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             -cCCCCCEEEECCC------C----HHHHHHHHHHhhcCCEEEEE
Confidence             1235898875421      1    13456677889999988864

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=94.87  E-value=0.031  Score=43.66  Aligned_cols=86  Identities=17%  Similarity=0.129  Sum_probs=46.5

Q ss_pred             CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccc-ccCCCCeeEEeccccccccccccCCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      .+|||.-+|-|+.+.-++.. +++|+++|-|+-+....+.-+..-. ...+. .....+++++++|..++...    +..
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~-~~~~~~~~~~~ri~l~~~d~~~~L~~----~~~  150 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQ-QDPELLAEAMRRIQLIHGDALEYLRQ----PDN  150 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHH-HSTTTHHHHHHHEEEEES-CCCHCCC----HSS
T ss_pred             CEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHH-hCcHhHHHHHhCCEEEcCCHHHHHhh----cCC
Confidence            48999999999999988754 4589999999987666554432100 00000 11224689999998775321    468


Q ss_pred             CeeEEEEcccccc
Q 027388          165 PFDICSCQFAMHY  177 (224)
Q Consensus       165 ~~D~i~~~~~l~~  177 (224)
                      +||+|+..-.+.+
T Consensus       151 s~DVVY~DPMFp~  163 (234)
T PF04445_consen  151 SFDVVYFDPMFPE  163 (234)
T ss_dssp             --SEEEE--S---
T ss_pred             CCCEEEECCCCCC
Confidence            9999998765543

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.79  E-value=0.42  Score=39.97  Aligned_cols=98  Identities=19%  Similarity=0.147  Sum_probs=61.1

Q ss_pred             CCCeEEEecCCC-chhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-ccccccccccc
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLDKVL  160 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~  160 (224)
                      ++.+++=+|||. |.++..+++. +..+++.+|.++..++.|++....            ..+..... +......... 
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~------------~~~~~~~~~~~~~~~~~~t-  234 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA------------DVVVNPSEDDAGAEILELT-  234 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC------------eEeecCccccHHHHHHHHh-
Confidence            445899999998 6555666554 557899999999999999986541            00111111 1100000000 


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ....+|+++-.-.          ....+..+.+.+++||.+++.
T Consensus       235 -~g~g~D~vie~~G----------~~~~~~~ai~~~r~gG~v~~v  268 (350)
T COG1063         235 -GGRGADVVIEAVG----------SPPALDQALEALRPGGTVVVV  268 (350)
T ss_pred             -CCCCCCEEEECCC----------CHHHHHHHHHHhcCCCEEEEE
Confidence             1247999984332          123788899999999987764

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.68  E-value=0.35  Score=39.59  Aligned_cols=100  Identities=19%  Similarity=0.093  Sum_probs=61.6

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec--c-cccc-
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG--D-CYEV-  154 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~--d-~~~~-  154 (224)
                      ..+.+.++|=+|+|. |-.+..+++. +..+++.+|+++..++.|++--.              .+.....  + ...+ 
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga--------------~~~~~~~~~~~~~~~~  231 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGA--------------TVTDPSSHKSSPQELA  231 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCC--------------eEEeeccccccHHHHH
Confidence            346789999999998 5455555543 66799999999999999998322              0111111  1 1110 


Q ss_pred             -ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          155 -HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       155 -~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ...... ....+|+.+-...++          ..++.....++.||.+++.
T Consensus       232 ~~v~~~~-g~~~~d~~~dCsG~~----------~~~~aai~a~r~gGt~vlv  272 (354)
T KOG0024|consen  232 ELVEKAL-GKKQPDVTFDCSGAE----------VTIRAAIKATRSGGTVVLV  272 (354)
T ss_pred             HHHHhhc-cccCCCeEEEccCch----------HHHHHHHHHhccCCEEEEe
Confidence             000000 234588888654443          3455567888999997764

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=94.65  E-value=0.031  Score=45.81  Aligned_cols=114  Identities=21%  Similarity=0.251  Sum_probs=74.6

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHH-------HHhccCCccccccccc-CCCCeeEEecccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDC-------RTRYNGDADHHQRRKK-FSFPARLICGDCY  152 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a-------~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~  152 (224)
                      ...+|+.|+|--.|||.++...+ ..++.|+|.|++-.++...       +.+++        +-+ .+.-+.++.+|..
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa-~FGa~viGtDIDyr~vragrg~~~si~aNFk--------QYg~~~~fldvl~~D~s  275 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAA-HFGAYVIGTDIDYRTVRAGRGEDESIKANFK--------QYGSSSQFLDVLTADFS  275 (421)
T ss_pred             ccCCCCEEecCccccCceeeehh-hhcceeeccccchheeecccCCCcchhHhHH--------HhCCcchhhheeeeccc
Confidence            56789999999999999998765 5667899999999887732       22332        222 1222456777776


Q ss_pred             ccccccccCCCCCeeEEEEcccc------------------------ccccC-CH----HHHHHHHHHHHhhccCCeEEE
Q 027388          153 EVHLDKVLADDAPFDICSCQFAM------------------------HYSWS-TE----ARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l------------------------~~~~~-~~----~~~~~~l~~~~~~lk~gG~li  203 (224)
                      +-++.    ..-.||.|+|.-..                        .|+.. ..    .-....|.-..+.|..||.++
T Consensus       276 n~~~r----sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv  351 (421)
T KOG2671|consen  276 NPPLR----SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLV  351 (421)
T ss_pred             Ccchh----hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEE
Confidence            65553    35789999986311                        11111 00    112345566778889999998


Q ss_pred             EEeC
Q 027388          204 GTMP  207 (224)
Q Consensus       204 ~~~~  207 (224)
                      +=.|
T Consensus       352 ~w~p  355 (421)
T KOG2671|consen  352 FWLP  355 (421)
T ss_pred             EecC
Confidence            7654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.64  E-value=0.91  Score=31.02  Aligned_cols=104  Identities=17%  Similarity=0.082  Sum_probs=66.2

Q ss_pred             CCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEE
Q 027388           93 CGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDIC  169 (224)
Q Consensus        93 cG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i  169 (224)
                      ||.|.++..+++   .....++.+|.++..++.++...                +.++.+|..+...-... ....++.+
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----------------~~~i~gd~~~~~~l~~a-~i~~a~~v   66 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----------------VEVIYGDATDPEVLERA-GIEKADAV   66 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----------------SEEEES-TTSHHHHHHT-TGGCESEE
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----------------cccccccchhhhHHhhc-CccccCEE
Confidence            566677776664   23348999999999988887652                56888998765421111 34678877


Q ss_pred             EEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhccc
Q 027388          170 SCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHF  221 (224)
Q Consensus       170 ~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~gf  221 (224)
                      ++..-       .+.....+....+.+.|...++....+.. ..+.|++.|.
T Consensus        67 v~~~~-------~d~~n~~~~~~~r~~~~~~~ii~~~~~~~-~~~~l~~~g~  110 (116)
T PF02254_consen   67 VILTD-------DDEENLLIALLARELNPDIRIIARVNDPE-NAELLRQAGA  110 (116)
T ss_dssp             EEESS-------SHHHHHHHHHHHHHHTTTSEEEEEESSHH-HHHHHHHTT-
T ss_pred             EEccC-------CHHHHHHHHHHHHHHCCCCeEEEEECCHH-HHHHHHHCCc
Confidence            76532       24445555566677788888888876644 4566666664

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.57  E-value=0.14  Score=42.59  Aligned_cols=100  Identities=19%  Similarity=0.115  Sum_probs=71.7

Q ss_pred             CCeEEEecCCCchhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           85 GDVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      +.+|||.=+|+|.=++.++..... +++.-|+|+..++.+++++..+         ...+...+..|+..+-..    ..
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---------~~~~~~v~n~DAN~lm~~----~~  119 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---------SGEDAEVINKDANALLHE----LH  119 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---------CcccceeecchHHHHHHh----cC
Confidence            789999999999988888765443 8999999999999999998732         122344555666544331    13


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..||+|=..- +       =.+..++....+.++.||+|.++
T Consensus       120 ~~fd~IDiDP-F-------GSPaPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867         120 RAFDVIDIDP-F-------GSPAPFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             CCccEEecCC-C-------CCCchHHHHHHHHhhcCCEEEEE
Confidence            6788874321 1       12456777788888889999987

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=94.42  E-value=0.074  Score=43.20  Aligned_cols=120  Identities=16%  Similarity=0.192  Sum_probs=76.7

Q ss_pred             CeEEEecCCCchhHHHHHhhc------------C---------CeEEEEeCCh--hHHHHHHHhccCCccc-------c-
Q 027388           86 DVVLDLACGKGGDLIKWDKAK------------I---------GYYVGIDIAE--GSIEDCRTRYNGDADH-------H-  134 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~------------~---------~~~~gvD~s~--~~~~~a~~~~~~~~~~-------~-  134 (224)
                      .+||-||.|.|.-...++...            .         -.++.||+.+  ..++.....+......       + 
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            689999999987555443211            1         2688999764  4455555554432000       0 


Q ss_pred             cccccCCCCeeEEecccccccccccc--CCCCCeeEEEEccccccccC-CHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          135 QRRKKFSFPARLICGDCYEVHLDKVL--ADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       135 ~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~~~~D~i~~~~~l~~~~~-~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .....-..++.|.+.|+.....+++.  ......++|+..+.++.+++ +.....++|.++...+++|..|+|.
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv  241 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV  241 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence            01122344689999999887653321  11235788888777766654 4566788999999999999987764

>PRK10458 DNA cytosine methylase; Provisional

Probab=94.30  E-value=0.98  Score=39.30  Aligned_cols=43  Identities=12%  Similarity=0.144  Sum_probs=37.0

Q ss_pred             CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhc
Q 027388           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY  127 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~  127 (224)
                      ..+++|+-||.|++...+...++..+.++|+++.+.+.-+.++
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence            4589999999999999886666666789999999999888876

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.07  E-value=0.19  Score=44.02  Aligned_cols=100  Identities=14%  Similarity=0.107  Sum_probs=60.3

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc---------
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE---------  153 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~---------  153 (224)
                      ++.+++=+|+|. |..+..++......++.+|.++..++.++. +.               ..++..+..+         
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lG---------------a~~v~v~~~e~g~~~~gYa  226 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MG---------------AEFLELDFKEEGGSGDGYA  226 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC---------------CeEEeccccccccccccce
Confidence            468999999987 455555555556679999999998888775 22               1222222110         


Q ss_pred             ------cc---cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          154 ------VH---LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       154 ------~~---~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                            ..   ..........+|+|+..-.+.-    .+.+.-+.++..+.+|||++++
T Consensus       227 ~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG----~~aP~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       227 KVMSEEFIAAEMELFAAQAKEVDIIITTALIPG----KPAPKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             eecCHHHHHHHHHHHHHHhCCCCEEEECcccCC----CCCCeeehHHHHhhCCCCCEEE
Confidence                  00   0000001367999986653321    1233446778889999998876

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PTZ00357 methyltransferase; Provisional

Probab=93.72  E-value=0.26  Score=44.40  Aligned_cols=86  Identities=19%  Similarity=0.140  Sum_probs=51.6

Q ss_pred             CeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc-
Q 027388           86 DVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV-  159 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-  159 (224)
                      ..|+=+|+|.|-+....++.     -..++++||.++..+.....+......+.....-.+..|+++..|+..+..... 
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            35899999999887766543     123789999997655444444321111110011124568999999998754210 


Q ss_pred             -----cCCCCCeeEEEE
Q 027388          160 -----LADDAPFDICSC  171 (224)
Q Consensus       160 -----~~~~~~~D~i~~  171 (224)
                           ...-+.+|+|++
T Consensus       782 ~s~~~P~~~gKaDIVVS  798 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVS  798 (1072)
T ss_pred             ccccccccccccceehH
Confidence                 001147999996

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=93.68  E-value=0.94  Score=38.27  Aligned_cols=137  Identities=15%  Similarity=0.182  Sum_probs=76.6

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh--------cCCeEEEEeC----ChhHHHHHHHhccCCcccccccccCCCC
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--------KIGYYVGIDI----AEGSIEDCRTRYNGDADHHQRRKKFSFP  143 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--------~~~~~~gvD~----s~~~~~~a~~~~~~~~~~~~~~~~~~~~  143 (224)
                      +++.......-.|+|+|.|.|.....+.+.        ..-++++|+.    +...++.+.+++...      ...++..
T Consensus       102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~f------A~~lgv~  175 (374)
T PF03514_consen  102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEF------ARSLGVP  175 (374)
T ss_pred             HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHH------HHHcCcc
Confidence            344443445567999999999866666542        1126899999    777888877776521      1222333


Q ss_pred             eeEEe---ccccccccccccCCCCCeeEEEEccccccccCCH---HHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHH
Q 027388          144 ARLIC---GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE---ARARRALANVSALLRPGGTFIGTMP---DANVIIK  214 (224)
Q Consensus       144 v~~~~---~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~---~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~  214 (224)
                      ..|..   .+++++.........+.+=+|-|...+|++.+..   ..+...+-...+.|+|.-++++...   |...+..
T Consensus       176 fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E~ea~~n~~~F~~  255 (374)
T PF03514_consen  176 FEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVEQEADHNSPSFLE  255 (374)
T ss_pred             EEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEeecCCCCCCchHH
Confidence            33333   3444443332222345555555667788874211   1233344455568899866665422   3344555


Q ss_pred             Hhhh
Q 027388          215 KLRE  218 (224)
Q Consensus       215 ~~~~  218 (224)
                      .|.+
T Consensus       256 RF~e  259 (374)
T PF03514_consen  256 RFRE  259 (374)
T ss_pred             HHHH
Confidence            5544

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PRK11524 putative methyltransferase; Provisional

Probab=93.66  E-value=0.24  Score=40.11  Aligned_cols=75  Identities=13%  Similarity=0.154  Sum_probs=44.9

Q ss_pred             eeEEeccccccccccccCCCCCeeEEEEcccccc------c---cCC---HHHHHHHHHHHHhhccCCeEEEEEeCCh-H
Q 027388          144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY------S---WST---EARARRALANVSALLRPGGTFIGTMPDA-N  210 (224)
Q Consensus       144 v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~------~---~~~---~~~~~~~l~~~~~~lk~gG~li~~~~~~-~  210 (224)
                      ..++++|+.+.... .  +.++||+|++.-....      .   +..   ..-...++..+.++|||||.+++..... .
T Consensus         9 ~~i~~gD~~~~l~~-l--~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~   85 (284)
T PRK11524          9 KTIIHGDALTELKK-I--PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENM   85 (284)
T ss_pred             CEEEeccHHHHHHh-c--ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhh
Confidence            46888998764210 1  4678999998643210      0   000   0123578899999999999998864432 1


Q ss_pred             HHHHHhhhccc
Q 027388          211 VIIKKLREEHF  221 (224)
Q Consensus       211 ~~~~~~~~~gf  221 (224)
                      .....+.+.||
T Consensus        86 ~~~~~~~~~~f   96 (284)
T PRK11524         86 PFIDLYCRKLF   96 (284)
T ss_pred             hHHHHHHhcCc
Confidence            22334445554

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=93.53  E-value=0.29  Score=34.19  Aligned_cols=85  Identities=19%  Similarity=0.152  Sum_probs=54.9

Q ss_pred             CchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--cccccCCCCCeeEEEEc
Q 027388           95 KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKVLADDAPFDICSCQ  172 (224)
Q Consensus        95 ~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~D~i~~~  172 (224)
                      .|.++..+++....+++++|.++..++.+++.-.               -.++..+-.++.  ..... ....+|+|+-.
T Consensus         2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga---------------~~~~~~~~~~~~~~i~~~~-~~~~~d~vid~   65 (130)
T PF00107_consen    2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGA---------------DHVIDYSDDDFVEQIRELT-GGRGVDVVIDC   65 (130)
T ss_dssp             HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE---------------SEEEETTTSSHHHHHHHHT-TTSSEEEEEES
T ss_pred             hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc---------------ccccccccccccccccccc-ccccceEEEEe
Confidence            4778888887766899999999999999987543               122222111110  00000 23589999854


Q ss_pred             cccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          173 FAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       173 ~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      -.-          ...+.....+++++|.+++.
T Consensus        66 ~g~----------~~~~~~~~~~l~~~G~~v~v   88 (130)
T PF00107_consen   66 VGS----------GDTLQEAIKLLRPGGRIVVV   88 (130)
T ss_dssp             SSS----------HHHHHHHHHHEEEEEEEEEE
T ss_pred             cCc----------HHHHHHHHHHhccCCEEEEE
Confidence            321          24777888999999998875

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.52  E-value=0.056  Score=46.40  Aligned_cols=109  Identities=15%  Similarity=0.140  Sum_probs=78.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      .++.+|||.=|++|.-++.++..  +...+++.|.++..++..+.++..+        .....+...+.|+..+-.... 
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N--------~v~~ive~~~~DA~~lM~~~~-  178 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN--------GVEDIVEPHHSDANVLMYEHP-  178 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc--------CchhhcccccchHHHHHHhcc-
Confidence            45678999999999999988864  5678999999999999999988732        333445666677654433210 


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      .....||+|=..- +       =....||....+.++.||.|+++.-+
T Consensus       179 ~~~~~FDvIDLDP-y-------Gs~s~FLDsAvqav~~gGLL~vT~TD  218 (525)
T KOG1253|consen  179 MVAKFFDVIDLDP-Y-------GSPSPFLDSAVQAVRDGGLLCVTCTD  218 (525)
T ss_pred             ccccccceEecCC-C-------CCccHHHHHHHHHhhcCCEEEEEecc
Confidence            0347899986432 1       12356888888999999999997433

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=93.17  E-value=0.33  Score=40.53  Aligned_cols=43  Identities=16%  Similarity=0.024  Sum_probs=35.2

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHh
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTR  126 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~  126 (224)
                      +-+.++|+|.|.|.++..+.-...-.|.+||-|....+.|++.
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence            4578999999999999888766677899999998777766543

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.05  E-value=0.35  Score=39.39  Aligned_cols=97  Identities=9%  Similarity=0.071  Sum_probs=69.3

Q ss_pred             CCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        85 ~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      +.+|.=||.|. |..+..++.....+|+.+|+|...++.....+.             .++.+...+..++..     .-
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-------------~rv~~~~st~~~iee-----~v  229 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-------------GRVHTLYSTPSNIEE-----AV  229 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-------------ceeEEEEcCHHHHHH-----Hh
Confidence            45677777776 556666665567899999999988887776654             236666666555443     34


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                      .+.|+++..-.+-    ....+.-+.+++.+.+|||++++
T Consensus       230 ~~aDlvIgaVLIp----gakaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         230 KKADLVIGAVLIP----GAKAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             hhccEEEEEEEec----CCCCceehhHHHHHhcCCCcEEE
Confidence            7899998643332    44677888999999999999887

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=92.76  E-value=1.3  Score=36.19  Aligned_cols=98  Identities=18%  Similarity=0.252  Sum_probs=59.5

Q ss_pred             hcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc-c
Q 027388           82 ARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-V  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~  159 (224)
                      ..++.+||-.|+|. |..+..++.....+++.++.++...+.+++.-.                ..+...-....... .
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~----------------~~~~~~~~~~~~~~~~  226 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGA----------------DEVLNSLDDSPKDKKA  226 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC----------------CEEEcCCCcCHHHHHH
Confidence            45677888888763 777777776666679999999988888854311                11111100000000 0


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ......+|+++.....          ...+..+.+.|+++|.++..
T Consensus       227 ~~~~~~~D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         227 AGLGGGFDVIFDFVGT----------QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             HhcCCCceEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence            0034679988753211          23567788999999998864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=92.64  E-value=0.34  Score=40.95  Aligned_cols=59  Identities=15%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             CCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       142 ~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .++++.++++.+.....   +++++|.++....+.|+  +.....+.++.+.+.++|||++++-
T Consensus       275 drv~i~t~si~~~L~~~---~~~s~~~~vL~D~~Dwm--~~~~~~~~~~~l~~~~~pgaRV~~R  333 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRL---PPGSFDRFVLSDHMDWM--DPEQLNEEWQELARTARPGARVLWR  333 (380)
T ss_pred             CeEEEEeccHHHHHHhC---CCCCeeEEEecchhhhC--CHHHHHHHHHHHHHHhCCCCEEEEe
Confidence            56889999887754211   47899999999999998  7789999999999999999999985

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.57  E-value=3.2  Score=33.90  Aligned_cols=117  Identities=21%  Similarity=0.149  Sum_probs=75.9

Q ss_pred             CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC---
Q 027388           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA---  161 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---  161 (224)
                      -..|+-+|||--.-+..+-......++-+|.-+ .++.-++.+.+.+      ...+...+++..|+.+.++...+.   
T Consensus        93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pe-vi~~K~~~l~e~~------~~~~~~~~~Va~Dl~~~dw~~~L~~~G  165 (297)
T COG3315          93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPE-VIEFKKKLLAERG------ATPPAHRRLVAVDLREDDWPQALAAAG  165 (297)
T ss_pred             ccEEEEeccccccceeecCCCCCCeEEECCCcH-HHHHHHHHhhhcC------CCCCceEEEEeccccccchHHHHHhcC
Confidence            578999999975444433211224566666544 4455445555221      112335788999998554432221   


Q ss_pred             -CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH
Q 027388          162 -DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (224)
Q Consensus       162 -~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~  210 (224)
                       ....--++++-+++.|+  +.+...++|..+...+.||-.++...+...
T Consensus       166 ~d~~~pt~~iaEGLl~YL--~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~  213 (297)
T COG3315         166 FDRSRPTLWIAEGLLMYL--PEEAVDRLLSRIAALSAPGSRVAFDYSLPG  213 (297)
T ss_pred             CCcCCCeEEEeccccccC--CHHHHHHHHHHHHHhCCCCceEEEeccccH
Confidence             23455577888899998  888899999999999999998888875333

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=91.66  E-value=1.8  Score=33.58  Aligned_cols=62  Identities=15%  Similarity=0.123  Sum_probs=45.8

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ...-|.+||.|.|+.+..++..+..++..|+.+..++.-.+...+.          -+......++|+..+.
T Consensus        50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EA----------a~~~~~IHh~D~LR~~  111 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEA----------APGKLRIHHGDVLRFK  111 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhc----------CCcceEEeccccceeh
Confidence            5678999999999999999888888999999998887766544321          1224566677766553

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=91.48  E-value=3.2  Score=34.20  Aligned_cols=91  Identities=10%  Similarity=-0.037  Sum_probs=56.7

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+||=.|+|. |..+.++++....++++++.++...+.+++.-.            .   .++  +..+.     
T Consensus       162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga------------~---~vi--~~~~~-----  219 (329)
T TIGR02822       162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGA------------A---SAG--GAYDT-----  219 (329)
T ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCC------------c---eec--ccccc-----
Confidence            345788999888753 445566665555679999999988888877533            1   111  11111     


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ..+.+|+++.....       .   ..+....+.|++||.+++.
T Consensus       220 --~~~~~d~~i~~~~~-------~---~~~~~~~~~l~~~G~~v~~  253 (329)
T TIGR02822       220 --PPEPLDAAILFAPA-------G---GLVPPALEALDRGGVLAVA  253 (329)
T ss_pred             --CcccceEEEECCCc-------H---HHHHHHHHhhCCCcEEEEE
Confidence              12357766532211       1   3577788899999998763

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=91.45  E-value=3.2  Score=33.20  Aligned_cols=109  Identities=14%  Similarity=0.070  Sum_probs=60.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh------cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~------~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      +.+...++|+|||.|.++..++..      ....++.||-....... -..+..        ......++-+..|+.++.
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~-D~~~~~--------~~~~~~~~R~riDI~dl~   86 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKA-DNKIRK--------DESEPKFERLRIDIKDLD   86 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccc-hhhhhc--------cCCCCceEEEEEEeeccc
Confidence            356778999999999999888763      24578999976633322 111110        011134677788888877


Q ss_pred             cccccCCC-CCee-EEEEccccccccCCHHHHHHHHHHHHhhcc-------CCeEEEEE
Q 027388          156 LDKVLADD-APFD-ICSCQFAMHYSWSTEARARRALANVSALLR-------PGGTFIGT  205 (224)
Q Consensus       156 ~~~~~~~~-~~~D-~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk-------~gG~li~~  205 (224)
                      +....... +.-. ++++-+.-.      ....-.|+.+.+..+       ..|.++..
T Consensus        87 l~~~~~~~~~~~~vv~isKHLCG------~ATDlaLRcl~~~~~~~~~~~~~~gi~iA~  139 (259)
T PF05206_consen   87 LSKLPELQNDEKPVVAISKHLCG------AATDLALRCLLNSQKLSEGNGSVRGIVIAP  139 (259)
T ss_pred             hhhcccccCCCCcEEEEEccccc------cchhHHHHhhccCccccccCCccCeEEEEe
Confidence            65443211 1222 222222111      123456666666554       46777754

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.25  E-value=2  Score=33.66  Aligned_cols=98  Identities=24%  Similarity=0.224  Sum_probs=58.6

Q ss_pred             cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+||-.|+|+ |..+..++.....++++++.++...+.+++...            ...+.....+.... ..  ..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~-~~--~~  197 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA------------DHVIDYKEEDLEEE-LR--LT  197 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC------------ceeccCCcCCHHHH-HH--Hh
Confidence            5678999999986 666666766666789999999888777754321            00000000000000 00  00


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ....+|+++....-       .   ..+..+.+.++++|.++..
T Consensus       198 ~~~~~d~vi~~~~~-------~---~~~~~~~~~l~~~G~~v~~  231 (271)
T cd05188         198 GGGGADVVIDAVGG-------P---ETLAQALRLLRPGGRIVVV  231 (271)
T ss_pred             cCCCCCEEEECCCC-------H---HHHHHHHHhcccCCEEEEE
Confidence            24679999854221       1   3456677888999988864

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.13  E-value=1.5  Score=36.48  Aligned_cols=94  Identities=11%  Similarity=-0.022  Sum_probs=55.9

Q ss_pred             cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeC---ChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDI---AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~---s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      .++.+||=+|+|. |.++.++++....++++++.   ++..++.+++.-.                .++  +..+.....
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga----------------~~v--~~~~~~~~~  232 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGA----------------TYV--NSSKTPVAE  232 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC----------------EEe--cCCccchhh
Confidence            4678899888865 55666676655558999986   6777777765322                111  111111000


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ......+|+|+-.-.      .    ...+....+.|++||.+++.
T Consensus       233 -~~~~~~~d~vid~~g------~----~~~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         233 -VKLVGEFDLIIEATG------V----PPLAFEALPALAPNGVVILF  268 (355)
T ss_pred             -hhhcCCCCEEEECcC------C----HHHHHHHHHHccCCcEEEEE
Confidence             001346898875432      1    12567788899999988753

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=91.07  E-value=0.19  Score=35.35  Aligned_cols=69  Identities=23%  Similarity=0.286  Sum_probs=44.4

Q ss_pred             eeEEeccccccccccccCCCCCeeEEEEccccccccCCHHH----HHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhc
Q 027388          144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR----ARRALANVSALLRPGGTFIGTMPDANVIIKKLREE  219 (224)
Q Consensus       144 v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~----~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~  219 (224)
                      +++..+|+.+.-..    -...||+|+....-     +..+    -..+++.+.+++++||.+.-.+ ....++..|.++
T Consensus        33 L~L~~gDa~~~l~~----l~~~~Da~ylDgFs-----P~~nPelWs~e~~~~l~~~~~~~~~l~Tys-~a~~Vr~~L~~a  102 (124)
T PF05430_consen   33 LTLWFGDAREMLPQ----LDARFDAWYLDGFS-----PAKNPELWSEELFKKLARLSKPGGTLATYS-SAGAVRRALQQA  102 (124)
T ss_dssp             EEEEES-HHHHHHH----B-T-EEEEEE-SS------TTTSGGGSSHHHHHHHHHHEEEEEEEEES---BHHHHHHHHHC
T ss_pred             EEEEEcHHHHHHHh----CcccCCEEEecCCC-----CcCCcccCCHHHHHHHHHHhCCCcEEEEee-chHHHHHHHHHc
Confidence            56788887653211    24789999976521     1111    2579999999999998776444 347799999999


Q ss_pred             ccc
Q 027388          220 HFC  222 (224)
Q Consensus       220 gf~  222 (224)
                      ||.
T Consensus       103 GF~  105 (124)
T PF05430_consen  103 GFE  105 (124)
T ss_dssp             TEE
T ss_pred             CCE
Confidence            985

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=90.91  E-value=1.4  Score=36.24  Aligned_cols=92  Identities=22%  Similarity=0.251  Sum_probs=55.5

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc---cccccccc
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD---CYEVHLDK  158 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d---~~~~~~~~  158 (224)
                      ++.+||-.|||. |..+..+++.... ++++++.++...+.+++.-.            .   .++...   +.....  
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~------------~---~vi~~~~~~~~~~~~--  227 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA------------D---ETVNLARDPLAAYAA--  227 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC------------C---EEEcCCchhhhhhhc--
Confidence            677888888765 6666666655444 78999999888887655321            0   111111   111111  


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                         ....+|+++.....          ...+..+.+.|+++|.++..
T Consensus       228 ---~~~~vd~vld~~g~----------~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         228 ---DKGDFDVVFEASGA----------PAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             ---cCCCccEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence               22458999864321          12456778888999988753

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=90.65  E-value=1.7  Score=35.99  Aligned_cols=92  Identities=14%  Similarity=0.084  Sum_probs=55.4

Q ss_pred             hcCCCeEEEecCCC-chhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           82 ARRGDVVLDLACGK-GGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ..++.+||=+|||. |.++..+++.  +..+++++|.++..++.++. +.               ..+.. +  .+.   
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~---------------~~~~~-~--~~~---  218 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD---------------ETYLI-D--DIP---  218 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC---------------ceeeh-h--hhh---
Confidence            35688999999865 4344555543  34579999999988888764 22               01100 1  111   


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                         ....+|+|+-.-.  .     ......+....++|++||.+++.
T Consensus       219 ---~~~g~d~viD~~G--~-----~~~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         219 ---EDLAVDHAFECVG--G-----RGSQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             ---hccCCcEEEECCC--C-----CccHHHHHHHHHhCcCCcEEEEE
Confidence               1225888874221  0     01134677788899999998753

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=90.48  E-value=2.3  Score=35.64  Aligned_cols=45  Identities=22%  Similarity=0.203  Sum_probs=32.3

Q ss_pred             hcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHh
Q 027388           82 ARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTR  126 (224)
Q Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~  126 (224)
                      ..++.+||=.|+|. |.++..+++.... .++++|.++..++.+++.
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~  235 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL  235 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc
Confidence            45677888888754 4455566655444 699999999998888653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=89.99  E-value=2.5  Score=31.76  Aligned_cols=106  Identities=14%  Similarity=0.082  Sum_probs=56.9

Q ss_pred             EEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC--------CCeeEEecccccccccc
Q 027388           88 VLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS--------FPARLICGDCYEVHLDK  158 (224)
Q Consensus        88 iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~--------~~v~~~~~d~~~~~~~~  158 (224)
                      |.=||+|+ |.-...++......|+.+|.++..++.+.+++...-..-.+...+.        .++. ...|+.+     
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~-----   75 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEE-----   75 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGG-----
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHH-----
Confidence            44567765 2222222224566999999999999988887652100000000011        1122 2333322     


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                          ....|+|+=.     +.+..+....+++++.+.+.|+..|.-++..
T Consensus        76 ----~~~adlViEa-----i~E~l~~K~~~~~~l~~~~~~~~ilasnTSs  116 (180)
T PF02737_consen   76 ----AVDADLVIEA-----IPEDLELKQELFAELDEICPPDTILASNTSS  116 (180)
T ss_dssp             ----GCTESEEEE------S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred             ----Hhhhheehhh-----ccccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence                2367888633     2335577899999999999999998877654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=89.85  E-value=2.8  Score=33.58  Aligned_cols=96  Identities=18%  Similarity=0.039  Sum_probs=54.4

Q ss_pred             cCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe-ccccccccccc
Q 027388           83 RRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDKV  159 (224)
Q Consensus        83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~  159 (224)
                      .++.+||=+|+|. |..+..+++.... .++.+|.++..++.+++.-.            .   .++. .+..+ .....
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga------------~---~~i~~~~~~~-~~~~~  182 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA------------T---ALAEPEVLAE-RQGGL  182 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC------------c---EecCchhhHH-HHHHH
Confidence            4677888888754 4455556555444 48899999988888876422            0   1110 01000 00000


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      . ....+|+++-.-.      .    ...+....+.++++|.+++.
T Consensus       183 ~-~~~g~d~vid~~G------~----~~~~~~~~~~l~~~G~iv~~  217 (280)
T TIGR03366       183 Q-NGRGVDVALEFSG------A----TAAVRACLESLDVGGTAVLA  217 (280)
T ss_pred             h-CCCCCCEEEECCC------C----hHHHHHHHHHhcCCCEEEEe
Confidence            0 2346898874321      1    23566678889999988753

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=89.53  E-value=0.41  Score=38.72  Aligned_cols=74  Identities=19%  Similarity=0.127  Sum_probs=52.5

Q ss_pred             CCCeEEEecCCCchhHH-HHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLI-KWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~-~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .+..|+|+=+|-|.++. .+...+...|+++|.++..++..++.+..        ....+......+|-....      +
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~--------N~V~~r~~i~~gd~R~~~------~  259 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEA--------NNVMDRCRITEGDNRNPK------P  259 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHh--------cchHHHHHhhhccccccC------c
Confidence            45789999999999999 55556777899999999999999998772        233333445555544333      2


Q ss_pred             CCCeeEEEE
Q 027388          163 DAPFDICSC  171 (224)
Q Consensus       163 ~~~~D~i~~  171 (224)
                      ....|-|..
T Consensus       260 ~~~AdrVnL  268 (351)
T KOG1227|consen  260 RLRADRVNL  268 (351)
T ss_pred             cccchheee
Confidence            455666653

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=89.34  E-value=5.3  Score=36.07  Aligned_cols=108  Identities=10%  Similarity=0.029  Sum_probs=64.8

Q ss_pred             CeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           86 DVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ..|+=+|+|  +.+..+++   .....++.+|.+++.++.+++. .               ...+.+|..+...-.. ..
T Consensus       401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g---------------~~v~~GDat~~~~L~~-ag  461 (601)
T PRK03659        401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY-G---------------YKVYYGDATQLELLRA-AG  461 (601)
T ss_pred             CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-C---------------CeEEEeeCCCHHHHHh-cC
Confidence            345555554  45554443   3456899999999999988653 1               5788999876542110 03


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                      -+++|++++..-       .++....+-...+.+.|...++....+.. -.+.+++.|
T Consensus       462 i~~A~~vv~~~~-------d~~~n~~i~~~~r~~~p~~~IiaRa~~~~-~~~~L~~~G  511 (601)
T PRK03659        462 AEKAEAIVITCN-------EPEDTMKIVELCQQHFPHLHILARARGRV-EAHELLQAG  511 (601)
T ss_pred             CccCCEEEEEeC-------CHHHHHHHHHHHHHHCCCCeEEEEeCCHH-HHHHHHhCC
Confidence            467888776431       12333334445566778888888776643 344455544

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=89.20  E-value=2.2  Score=35.57  Aligned_cols=46  Identities=26%  Similarity=0.357  Sum_probs=33.1

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHh
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTR  126 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~  126 (224)
                      ...++.+||=.|+|. |..+.++++.... +++++|.++...+.+++.
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~  220 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF  220 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence            345788888888754 5555666655444 599999999988888653

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=89.20  E-value=2.5  Score=31.74  Aligned_cols=98  Identities=14%  Similarity=0.115  Sum_probs=54.8

Q ss_pred             CeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc----
Q 027388           86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL----  160 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~----  160 (224)
                      ..|+.+|||--.....+.... ...++-+|+.. +++.-++.+....      .....+.+++.+|+.+..+....    
T Consensus        80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~-v~~~K~~~l~~~~------~~~~~~~~~v~~Dl~~~~~~~~L~~~g  152 (183)
T PF04072_consen   80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPE-VIALKRRLLPESG------ARPPANYRYVPADLRDDSWIDALPKAG  152 (183)
T ss_dssp             SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HH-HHHHHHHHHHHTH------HHHHEESSEEES-TTSHHHHHHHHHCT
T ss_pred             cEEEEcCCCCCchHHHhhccccceEEEEeCCHH-HHHHHHHHHHhCc------ccCCcceeEEeccccchhhHHHHHHhC
Confidence            489999999987777765433 44666777655 4444444444110      01112356799998864332111    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHH
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANV  192 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~  192 (224)
                      ......-++++-+++.|+  +.+....+++.+
T Consensus       153 ~~~~~ptl~i~Egvl~Yl--~~~~~~~ll~~i  182 (183)
T PF04072_consen  153 FDPDRPTLFIAEGVLMYL--SPEQVDALLRAI  182 (183)
T ss_dssp             T-TTSEEEEEEESSGGGS---HHHHHHHHHHH
T ss_pred             CCCCCCeEEEEcchhhcC--CHHHHHHHHHHh
Confidence            124566778888889998  667777777654

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=89.02  E-value=1.1  Score=32.43  Aligned_cols=100  Identities=18%  Similarity=0.136  Sum_probs=48.0

Q ss_pred             CCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ..-|||+|-|+|+.--.+.+. ...+++.+|---..-                ....+..-.++.+|+.+.... ...-.
T Consensus        29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~h----------------p~~~P~~~~~ilGdi~~tl~~-~~~~g   91 (160)
T PF12692_consen   29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACH----------------PSSTPPEEDLILGDIRETLPA-LARFG   91 (160)
T ss_dssp             -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-----------------GGG---GGGEEES-HHHHHHH-HHHH-
T ss_pred             CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccC----------------CCCCCchHheeeccHHHHhHH-HHhcC
Confidence            467999999999988777654 456799999532111                122233356888887654321 11012


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHH-----HHHHhhccCCeEEEEEe
Q 027388          164 APFDICSCQFAMHYSWSTEARARRAL-----ANVSALLRPGGTFIGTM  206 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l-----~~~~~~lk~gG~li~~~  206 (224)
                      ...-++.+....++     ++...+.     --+..+|.+||+++-..
T Consensus        92 ~~a~laHaD~G~g~-----~~~d~a~a~~lspli~~~la~gGi~vS~~  134 (160)
T PF12692_consen   92 AGAALAHADIGTGD-----KEKDDATAAWLSPLIAPVLAPGGIMVSGQ  134 (160)
T ss_dssp             S-EEEEEE----S------HHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             CceEEEEeecCCCC-----cchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence            44555555444432     2222222     23556889999888553

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=88.87  E-value=7.8  Score=35.18  Aligned_cols=111  Identities=16%  Similarity=0.126  Sum_probs=67.8

Q ss_pred             CCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        85 ~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ..+|+=+|||. |......+......++.+|.+++.++.+++. .               ...+.+|..+...-.. ..-
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g---------------~~v~~GDat~~~~L~~-agi  462 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-G---------------MKVFYGDATRMDLLES-AGA  462 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-C---------------CeEEEEeCCCHHHHHh-cCC
Confidence            35677788776 4434343334555899999999999988653 2               5788999876542110 024


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                      +.+|++++..       +.++....+-...+.+.|.-.++....+... ...+.+.|
T Consensus       463 ~~A~~vvv~~-------~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~-~~~L~~~G  511 (621)
T PRK03562        463 AKAEVLINAI-------DDPQTSLQLVELVKEHFPHLQIIARARDVDH-YIRLRQAG  511 (621)
T ss_pred             CcCCEEEEEe-------CCHHHHHHHHHHHHHhCCCCeEEEEECCHHH-HHHHHHCC
Confidence            5788877643       1233444444555666787777777666543 44445444

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=88.67  E-value=6.4  Score=34.70  Aligned_cols=64  Identities=22%  Similarity=0.391  Sum_probs=41.8

Q ss_pred             ceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhc
Q 027388           63 IIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRY  127 (224)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~  127 (224)
                      ++.++.+...+..++.. ...++..+.|..||+|.++......     ....++|.+....+...++.++
T Consensus       197 ~~Tp~~Iv~l~~~~~~~-~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm  265 (501)
T TIGR00497       197 FFTPQDISELLARIAIG-KKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM  265 (501)
T ss_pred             eeCcHHHHHHHHHHhcc-CCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence            44555554443332211 1124578999999999998764431     1235889999999999998874

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=87.75  E-value=11  Score=33.81  Aligned_cols=108  Identities=14%  Similarity=0.059  Sum_probs=62.6

Q ss_pred             CeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           86 DVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ..++=+|||.  .+..+++   .....++.+|.+++.++.+++.                ....+++|..+...-. ...
T Consensus       418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~----------------g~~~i~GD~~~~~~L~-~a~  478 (558)
T PRK10669        418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER----------------GIRAVLGNAANEEIMQ-LAH  478 (558)
T ss_pred             CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC----------------CCeEEEcCCCCHHHHH-hcC
Confidence            4566666665  4444443   3456899999999988888742                2678999987643210 013


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                      -+.+|.+++.-.      . ++....+-...+...|...++....+. .-.+.+++.|
T Consensus       479 i~~a~~viv~~~------~-~~~~~~iv~~~~~~~~~~~iiar~~~~-~~~~~l~~~G  528 (558)
T PRK10669        479 LDCARWLLLTIP------N-GYEAGEIVASAREKRPDIEIIARAHYD-DEVAYITERG  528 (558)
T ss_pred             ccccCEEEEEcC------C-hHHHHHHHHHHHHHCCCCeEEEEECCH-HHHHHHHHcC
Confidence            467886654321      1 222222333345556777777766554 3445556665

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=87.58  E-value=5.6  Score=32.67  Aligned_cols=46  Identities=20%  Similarity=0.198  Sum_probs=31.9

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCCe-EEEEeCChhHHHHHHHh
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTR  126 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~~  126 (224)
                      ...++.+||=+|+|. |.++..+++....+ +++++.++...+.+++.
T Consensus       160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~  207 (339)
T cd08239         160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL  207 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            345678888888753 44555566555555 99999999888887653

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=87.09  E-value=0.55  Score=39.85  Aligned_cols=48  Identities=21%  Similarity=0.160  Sum_probs=42.1

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGD  130 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~  130 (224)
                      ..+|..|.|+-||-|-++..++... +.|++.|+.+.++++.+.+++-+
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lN  294 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLN  294 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhcccc
Confidence            4678899999999999999987555 79999999999999999998743

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=87.09  E-value=5.8  Score=27.44  Aligned_cols=87  Identities=14%  Similarity=0.018  Sum_probs=55.2

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ...+|+|+|.|-=......+...+..++++|+.+.   .+.                 ..++++.-|+.+=..+    --
T Consensus        13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~-----------------~g~~~v~DDitnP~~~----iY   68 (129)
T COG1255          13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP-----------------EGLRFVVDDITNPNIS----IY   68 (129)
T ss_pred             cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc-----------------ccceEEEccCCCccHH----Hh
Confidence            34599999988644333333344469999999885   221                 2367888887643321    13


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeE
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT  201 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~  201 (224)
                      ...|+|.+..       +.+++...+-++.+.++...+
T Consensus        69 ~~A~lIYSiR-------pppEl~~~ildva~aVga~l~   99 (129)
T COG1255          69 EGADLIYSIR-------PPPELQSAILDVAKAVGAPLY   99 (129)
T ss_pred             hCccceeecC-------CCHHHHHHHHHHHHhhCCCEE
Confidence            6788888765       346777777777776665443

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=86.77  E-value=6.2  Score=31.89  Aligned_cols=121  Identities=15%  Similarity=0.018  Sum_probs=79.2

Q ss_pred             cCCCeEEEecCCCchhHHHHHh-hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-ccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~-~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~  160 (224)
                      ..++.|+=+| -.--.++.++- .-+.++..||+++..+...++.....+..         ++..+..|+.+ +|. +  
T Consensus       151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~---------~ie~~~~Dlr~plpe-~--  217 (354)
T COG1568         151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN---------NIEAFVFDLRNPLPE-D--  217 (354)
T ss_pred             cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc---------chhheeehhcccChH-H--
Confidence            3577899998 32223333332 24568999999999999988877633222         37778888764 221 1  


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC---eEEEEEeCCh-----HHHHH-Hhhhcccc
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG---GTFIGTMPDA-----NVIIK-KLREEHFC  222 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g---G~li~~~~~~-----~~~~~-~~~~~gf~  222 (224)
                       -...||+++..-. +    +-+....++.+=...|+.-   |++.++..+.     ..+.+ ++.+.||+
T Consensus       218 -~~~kFDvfiTDPp-e----Ti~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvV  282 (354)
T COG1568         218 -LKRKFDVFITDPP-E----TIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVV  282 (354)
T ss_pred             -HHhhCCeeecCch-h----hHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCee
Confidence             2479999986543 2    2266777888777788765   7888886543     35666 66677775

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=86.47  E-value=9.6  Score=31.10  Aligned_cols=99  Identities=13%  Similarity=-0.016  Sum_probs=58.3

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-cccccccc
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLD  157 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~  157 (224)
                      ...++.+||=.|+  |.|..+.++++....++++++.++...+.+++.-.            ..-+.+... +..+... 
T Consensus       135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa------------~~vi~~~~~~~~~~~~~-  201 (325)
T TIGR02825       135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGF------------DVAFNYKTVKSLEETLK-  201 (325)
T ss_pred             CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC------------CEEEeccccccHHHHHH-
Confidence            3567788887774  45778888877666689999999988888854211            000111110 1111000 


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..  ..+.+|+|+-.-       ..    ..+....+.|+++|.++..
T Consensus       202 ~~--~~~gvdvv~d~~-------G~----~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       202 KA--SPDGYDCYFDNV-------GG----EFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             Hh--CCCCeEEEEECC-------CH----HHHHHHHHHhCcCcEEEEe
Confidence            00  124689887432       11    1346778899999998853

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=86.42  E-value=4.1  Score=33.22  Aligned_cols=85  Identities=13%  Similarity=0.028  Sum_probs=50.7

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ++.++|=+|||. |.++.++++.... .++++|.++..++.+....                  ++  |..+.       
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------------------~i--~~~~~-------  196 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------------------VL--DPEKD-------  196 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------------------cc--Chhhc-------
Confidence            466788888765 5566667665444 4678888887666554311                  00  11100       


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ....+|+|+-.-.      .    ...+....+.++++|.+++.
T Consensus       197 ~~~g~Dvvid~~G------~----~~~~~~~~~~l~~~G~iv~~  230 (308)
T TIGR01202       197 PRRDYRAIYDASG------D----PSLIDTLVRRLAKGGEIVLA  230 (308)
T ss_pred             cCCCCCEEEECCC------C----HHHHHHHHHhhhcCcEEEEE
Confidence            1246888874321      1    13456778889999998853

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=86.36  E-value=4.4  Score=34.77  Aligned_cols=87  Identities=9%  Similarity=0.025  Sum_probs=54.6

Q ss_pred             cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+++|+=+|+|. |......++....+++.+|.++...+.|+..-                ....  +..+        
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G----------------~~~~--~~~e--------  253 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG----------------YEVM--TMEE--------  253 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC----------------CEEc--cHHH--------
Confidence            3688999999998 55555555555568999999998777776431                1111  1111        


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHH-HHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALA-NVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~-~~~~~lk~gG~li~~  205 (224)
                      ....+|+|+..-.-          ...+. ...+.+++||+++..
T Consensus       254 ~v~~aDVVI~atG~----------~~~i~~~~l~~mk~Ggilvnv  288 (413)
T cd00401         254 AVKEGDIFVTTTGN----------KDIITGEHFEQMKDGAIVCNI  288 (413)
T ss_pred             HHcCCCEEEECCCC----------HHHHHHHHHhcCCCCcEEEEe
Confidence            12457999864211          12344 358889999998754

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02740 Alcohol dehydrogenase-like

Probab=86.12  E-value=7  Score=32.90  Aligned_cols=46  Identities=20%  Similarity=0.263  Sum_probs=33.5

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHh
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTR  126 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~  126 (224)
                      ...++.+||=+|+|. |..+..+++.... .++++|.++..++.+++.
T Consensus       195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~  242 (381)
T PLN02740        195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM  242 (381)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc
Confidence            356788899898864 4455566655544 699999999988888653

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=86.08  E-value=5  Score=32.14  Aligned_cols=72  Identities=14%  Similarity=0.128  Sum_probs=47.1

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      .+.++...+|+|+-.|+++.++.+.. -.|++||--. |.+..-   .            ...|+....|-..+..    
T Consensus       208 rL~~~M~avDLGAcPGGWTyqLVkr~-m~V~aVDng~-ma~sL~---d------------tg~v~h~r~DGfk~~P----  266 (358)
T COG2933         208 RLAPGMWAVDLGACPGGWTYQLVKRN-MRVYAVDNGP-MAQSLM---D------------TGQVTHLREDGFKFRP----  266 (358)
T ss_pred             hhcCCceeeecccCCCccchhhhhcc-eEEEEeccch-hhhhhh---c------------ccceeeeeccCccccc----
Confidence            45688999999999999999997544 3899999654 222211   1            2235555555444432    


Q ss_pred             CCCCCeeEEEEccc
Q 027388          161 ADDAPFDICSCQFA  174 (224)
Q Consensus       161 ~~~~~~D~i~~~~~  174 (224)
                       .....|-++|..+
T Consensus       267 -~r~~idWmVCDmV  279 (358)
T COG2933         267 -TRSNIDWMVCDMV  279 (358)
T ss_pred             -CCCCCceEEeehh
Confidence             2467888887765

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=85.76  E-value=9.2  Score=31.78  Aligned_cols=100  Identities=15%  Similarity=0.052  Sum_probs=59.3

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-cccccccc
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLD  157 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~  157 (224)
                      ...++.+||=.|+  |.|.++.++++....++++++.++...+.+++.+..           ..-+.+... ++.+. ..
T Consensus       155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa-----------~~vi~~~~~~~~~~~-i~  222 (348)
T PLN03154        155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF-----------DEAFNYKEEPDLDAA-LK  222 (348)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC-----------CEEEECCCcccHHHH-HH
Confidence            3467888988887  357788888877667899999999888877643320           000111001 11110 00


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..  ..+.+|+++-.-       ..    ..+....+.|+++|.+++.
T Consensus       223 ~~--~~~gvD~v~d~v-------G~----~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        223 RY--FPEGIDIYFDNV-------GG----DMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             HH--CCCCcEEEEECC-------CH----HHHHHHHHHhccCCEEEEE
Confidence            00  124689887432       11    2557788889999988753

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=85.61  E-value=2.3  Score=36.07  Aligned_cols=49  Identities=12%  Similarity=0.050  Sum_probs=36.6

Q ss_pred             HHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhc
Q 027388           78 VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY  127 (224)
Q Consensus        78 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~  127 (224)
                      +.+.+.++++||-|.+|... +..++..++.+|++||+++..+...+=++
T Consensus        29 ~aL~i~~~d~vl~ItSaG~N-~L~yL~~~P~~I~aVDlNp~Q~aLleLKl   77 (380)
T PF11899_consen   29 EALNIGPDDRVLTITSAGCN-ALDYLLAGPKRIHAVDLNPAQNALLELKL   77 (380)
T ss_pred             HHhCCCCCCeEEEEccCCch-HHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence            34566889999999888664 44445578889999999998776655443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=85.54  E-value=5.1  Score=33.19  Aligned_cols=100  Identities=19%  Similarity=0.146  Sum_probs=61.0

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ..+++.+||=.|+  |-|.++.++++.....++++--++...+.+++...            +.-+.+...|+.+-....
T Consensus       139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGA------------d~vi~y~~~~~~~~v~~~  206 (326)
T COG0604         139 GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGA------------DHVINYREEDFVEQVREL  206 (326)
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCC------------CEEEcCCcccHHHHHHHH
Confidence            3466888998885  44678888887655477777777776776666544            111233333332211100


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .  ....+|+|+..-.-           ..+....+.|+++|.++..
T Consensus       207 t--~g~gvDvv~D~vG~-----------~~~~~~l~~l~~~G~lv~i  240 (326)
T COG0604         207 T--GGKGVDVVLDTVGG-----------DTFAASLAALAPGGRLVSI  240 (326)
T ss_pred             c--CCCCceEEEECCCH-----------HHHHHHHHHhccCCEEEEE
Confidence            0  23479999865422           3556678888999987764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=85.51  E-value=13  Score=31.93  Aligned_cols=95  Identities=12%  Similarity=0.103  Sum_probs=55.3

Q ss_pred             eEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccccCC
Q 027388           87 VVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLAD  162 (224)
Q Consensus        87 ~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~  162 (224)
                      +|+=+|+  |.++..+++   .....++++|.++..++.++....               +.++.+|..+... ...  .
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~---------------~~~~~gd~~~~~~l~~~--~   62 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLD---------------VRTVVGNGSSPDVLREA--G   62 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcC---------------EEEEEeCCCCHHHHHHc--C
Confidence            4566666  556665554   345589999999988877765332               6777888764321 111  2


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ...+|.|++...       .++....+....+.+.+.-.+++.+.
T Consensus        63 ~~~a~~vi~~~~-------~~~~n~~~~~~~r~~~~~~~ii~~~~  100 (453)
T PRK09496         63 AEDADLLIAVTD-------SDETNMVACQIAKSLFGAPTTIARVR  100 (453)
T ss_pred             CCcCCEEEEecC-------ChHHHHHHHHHHHHhcCCCeEEEEEC
Confidence            357888776431       13344445555555655555555543

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=84.73  E-value=11  Score=30.58  Aligned_cols=95  Identities=11%  Similarity=-0.001  Sum_probs=57.0

Q ss_pred             hcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--cc
Q 027388           82 ARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD  157 (224)
Q Consensus        82 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~  157 (224)
                      ..++.+||=.|+  |.|..+..+++....++++++.++...+.+++.-.               -.++...-.++.  ..
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga---------------~~vi~~~~~~~~~~v~  205 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGF---------------DAVFNYKTVSLEEALK  205 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC---------------CEEEeCCCccHHHHHH
Confidence            456778887774  45667777777666689999999988888876311               011111101110  00


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      ..  ....+|+|+-.-       ..    ..+....+.|+++|.++.
T Consensus       206 ~~--~~~gvd~vld~~-------g~----~~~~~~~~~l~~~G~iv~  239 (329)
T cd08294         206 EA--APDGIDCYFDNV-------GG----EFSSTVLSHMNDFGRVAV  239 (329)
T ss_pred             HH--CCCCcEEEEECC-------CH----HHHHHHHHhhccCCEEEE
Confidence            00  125689887431       11    345777888999998874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=84.70  E-value=8.4  Score=31.42  Aligned_cols=99  Identities=18%  Similarity=0.116  Sum_probs=56.2

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCCe-EEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+||-+|+|. |..+..+++....+ ++.++.++...+.+++...            .   .++..+-.......
T Consensus       156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~------------~---~~~~~~~~~~~~~~  220 (334)
T cd08234         156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA------------T---ETVDPSREDPEAQK  220 (334)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC------------e---EEecCCCCCHHHHH
Confidence            345678898888653 55666666555445 8899999888887754321            0   11111100000000


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .. ....+|+++....-          ...+....+.|+++|.++..
T Consensus       221 ~~-~~~~vd~v~~~~~~----------~~~~~~~~~~l~~~G~~v~~  256 (334)
T cd08234         221 ED-NPYGFDVVIEATGV----------PKTLEQAIEYARRGGTVLVF  256 (334)
T ss_pred             Hh-cCCCCcEEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence            00 23579999854211          13556677888999988753

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=84.20  E-value=1.9  Score=37.34  Aligned_cols=113  Identities=19%  Similarity=0.131  Sum_probs=68.9

Q ss_pred             CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc--cccc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL--DKVL  160 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~  160 (224)
                      .+.++|=+|-|.|.+...+... ....+++|++.+.+++.|.+.+....         ..+.++...|-..+..  ....
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---------~~r~~V~i~dGl~~~~~~~k~~  365 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---------SDRNKVHIADGLDFLQRTAKSQ  365 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---------hhhhhhhHhhchHHHHHHhhcc
Confidence            4567888999989877765432 44689999999999999999976211         1112222222222111  0111


Q ss_pred             CCCCCeeEEEEcc---ccccccCCHH--HHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQF---AMHYSWSTEA--RARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~---~l~~~~~~~~--~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .....||+++..-   -.|-+-++..  -...++..++..|.|.|.+++.
T Consensus       366 ~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in  415 (482)
T KOG2352|consen  366 QEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN  415 (482)
T ss_pred             ccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence            1356788887431   0121212222  2356888999999999999986

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=83.74  E-value=2.5  Score=31.55  Aligned_cols=105  Identities=20%  Similarity=0.205  Sum_probs=59.9

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .+++|.=+|+|. |......++....+|+++|.+..........                  .+...++.++        
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~------------------~~~~~~l~el--------   88 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF------------------GVEYVSLDEL--------   88 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT------------------TEEESSHHHH--------
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccc------------------cceeeehhhh--------
Confidence            688999998876 4444455555677999999999766522211                  1122233322        


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE----eCChHHHHHHhhhc
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT----MPDANVIIKKLREE  219 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~  219 (224)
                      -.+.|+|+....+.-     +...-+=++....+|+|.+||-.    .-+.+.+.+.+++.
T Consensus        89 l~~aDiv~~~~plt~-----~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g  144 (178)
T PF02826_consen   89 LAQADIVSLHLPLTP-----ETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESG  144 (178)
T ss_dssp             HHH-SEEEE-SSSST-----TTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred             cchhhhhhhhhcccc-----ccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhc
Confidence            246788887665421     00111224577888887766643    33667888887754

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=83.69  E-value=19  Score=28.98  Aligned_cols=85  Identities=12%  Similarity=-0.028  Sum_probs=48.6

Q ss_pred             eEEEecCCC--chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           87 VVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        87 ~iLDiGcG~--G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      +|.=||+|.  |.++..+. ....+|+++|.++..++.+.....               +.....+.   .      ...
T Consensus         2 ~I~IIG~G~mG~sla~~L~-~~g~~V~~~d~~~~~~~~a~~~g~---------------~~~~~~~~---~------~~~   56 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLR-SLGHTVYGVSRRESTCERAIERGL---------------VDEASTDL---S------LLK   56 (279)
T ss_pred             eEEEEeecHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHCCC---------------cccccCCH---h------Hhc
Confidence            355567664  33444443 234589999999988877765321               11111111   0      124


Q ss_pred             CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                      ..|+|+..-.       ......++.++...++++.++.
T Consensus        57 ~aDlVilavp-------~~~~~~~~~~l~~~l~~~~ii~   88 (279)
T PRK07417         57 DCDLVILALP-------IGLLLPPSEQLIPALPPEAIVT   88 (279)
T ss_pred             CCCEEEEcCC-------HHHHHHHHHHHHHhCCCCcEEE
Confidence            6788886543       3445667788888887775543

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=83.37  E-value=9.5  Score=31.50  Aligned_cols=44  Identities=20%  Similarity=0.191  Sum_probs=30.5

Q ss_pred             hcCCCeEEEecCCC-chhHHHHHhhcCCe-EEEEeCChhHHHHHHH
Q 027388           82 ARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRT  125 (224)
Q Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~  125 (224)
                      ..++.+||=.|+|. |..+..+++....+ +++++.++...+.+++
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  203 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS  203 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            34677888888755 44555565554444 7899999988888754

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=83.22  E-value=19  Score=29.26  Aligned_cols=96  Identities=18%  Similarity=0.075  Sum_probs=56.3

Q ss_pred             hhcCCCeEEEecCC-CchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG-~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+||-.|+| .|..+..+++....++++++.++...+.+++...               -.++...-......  
T Consensus       159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~~--  221 (330)
T cd08245         159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGA---------------DEVVDSGAELDEQA--  221 (330)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCC---------------cEEeccCCcchHHh--
Confidence            34567788888886 5666666666555689999999988887754211               01111100000000  


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ..+.+|+++....-          ...+..+.+.|+++|.++..
T Consensus       222 --~~~~~d~vi~~~~~----------~~~~~~~~~~l~~~G~~i~~  255 (330)
T cd08245         222 --AAGGADVILVTVVS----------GAAAEAALGGLRRGGRIVLV  255 (330)
T ss_pred             --ccCCCCEEEECCCc----------HHHHHHHHHhcccCCEEEEE
Confidence              12468888753211          12456678889999988754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=83.06  E-value=20  Score=27.83  Aligned_cols=80  Identities=14%  Similarity=0.132  Sum_probs=50.3

Q ss_pred             cCCCeEEEecCCCch--hHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           83 RRGDVVLDLACGKGG--DLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~--~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      .+.+.|+++.|+.|.  .++.|+.   ...++++.|-+.+..+...++.+..        .++...++|+.++..+..+.
T Consensus        40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~--------~~~~~~vEfvvg~~~e~~~~  111 (218)
T PF07279_consen   40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGE--------AGLSDVVEFVVGEAPEEVMP  111 (218)
T ss_pred             ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhh--------ccccccceEEecCCHHHHHh
Confidence            356789999776543  2333332   3567999999998887777777652        23344468888875332221


Q ss_pred             cccCCCCCeeEEEEccc
Q 027388          158 KVLADDAPFDICSCQFA  174 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~  174 (224)
                          .-..+|.++...-
T Consensus       112 ----~~~~iDF~vVDc~  124 (218)
T PF07279_consen  112 ----GLKGIDFVVVDCK  124 (218)
T ss_pred             ----hccCCCEEEEeCC
Confidence                3467888886543

The function of this family is unknown.

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=82.84  E-value=16  Score=29.13  Aligned_cols=87  Identities=14%  Similarity=0.101  Sum_probs=49.9

Q ss_pred             HHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccc
Q 027388          100 IKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS  178 (224)
Q Consensus       100 ~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~  178 (224)
                      ..+.+.+ ..+++|+|.++..++.|.+.-.               +.-...+...         -..+|+|+..-.+   
T Consensus         3 ~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~---------------~~~~~~~~~~---------~~~~DlvvlavP~---   55 (258)
T PF02153_consen    3 LALRKAGPDVEVYGYDRDPETLEAALELGI---------------IDEASTDIEA---------VEDADLVVLAVPV---   55 (258)
T ss_dssp             HHHHHTTTTSEEEEE-SSHHHHHHHHHTTS---------------SSEEESHHHH---------GGCCSEEEE-S-H---
T ss_pred             HHHHhCCCCeEEEEEeCCHHHHHHHHHCCC---------------eeeccCCHhH---------hcCCCEEEEcCCH---
Confidence            3343333 4689999999999988865532               1111121111         2457999876533   


Q ss_pred             cCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhh
Q 027388          179 WSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR  217 (224)
Q Consensus       179 ~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~  217 (224)
                          .....++.++...+++|+++.=...-...+...++
T Consensus        56 ----~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~   90 (258)
T PF02153_consen   56 ----SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAME   90 (258)
T ss_dssp             ----HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHH
T ss_pred             ----HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHH
Confidence                56788999999999998877654444444444444

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=82.73  E-value=7.9  Score=27.27  Aligned_cols=91  Identities=10%  Similarity=0.053  Sum_probs=46.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ....+|+|+|-|.=.-....+......++++|+.+.   .+.                 ..+.++.-|+.+=.++    -
T Consensus        12 ~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~-----------------~g~~~v~DDif~P~l~----i   67 (127)
T PF03686_consen   12 NNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP-----------------EGVNFVVDDIFNPNLE----I   67 (127)
T ss_dssp             S-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S------------------------STTEE---SSS--HH----H
T ss_pred             CCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc-----------------cCcceeeecccCCCHH----H
Confidence            455699999999865554444455579999999986   221                 1266777777542221    1


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      =...|+|.+...-       .++...+.++.+.+.  .-+++.+
T Consensus        68 Y~~a~lIYSiRPP-------~El~~~il~lA~~v~--adlii~p  102 (127)
T PF03686_consen   68 YEGADLIYSIRPP-------PELQPPILELAKKVG--ADLIIRP  102 (127)
T ss_dssp             HTTEEEEEEES---------TTSHHHHHHHHHHHT---EEEEE-
T ss_pred             hcCCcEEEEeCCC-------hHHhHHHHHHHHHhC--CCEEEEC
Confidence            2589999987642       445566666665543  4555553

; PDB: 2K4M_A.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=82.49  E-value=11  Score=31.51  Aligned_cols=39  Identities=18%  Similarity=-0.002  Sum_probs=26.5

Q ss_pred             cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHH
Q 027388           83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIE  121 (224)
Q Consensus        83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~  121 (224)
                      .++.+||=.|+|. |..+..+++....++++++.++....
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~  221 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKED  221 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhh
Confidence            4677888888864 55666666655667888887765443

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=82.06  E-value=21  Score=29.10  Aligned_cols=89  Identities=18%  Similarity=0.178  Sum_probs=49.3

Q ss_pred             CeEEEecCCC-ch-hHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           86 DVVLDLACGK-GG-DLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        86 ~~iLDiGcG~-G~-~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .+|.=||+|. |. ++..+...+. ..++++|.++...+.+++.-.            .  .. ...+..+        .
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~------------~--~~-~~~~~~~--------~   63 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL------------G--DR-VTTSAAE--------A   63 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC------------C--ce-ecCCHHH--------H
Confidence            5678888876 22 2233322232 379999999987776654211            0  01 1111111        1


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      ...+|+|+..-..       .....++..+...+++|+.++.
T Consensus        64 ~~~aDvViiavp~-------~~~~~v~~~l~~~l~~~~iv~d   98 (307)
T PRK07502         64 VKGADLVILCVPV-------GASGAVAAEIAPHLKPGAIVTD   98 (307)
T ss_pred             hcCCCEEEECCCH-------HHHHHHHHHHHhhCCCCCEEEe
Confidence            2467888865432       3345667777777888876553

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=81.86  E-value=3.8  Score=33.32  Aligned_cols=76  Identities=17%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             EEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHH
Q 027388          112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN  191 (224)
Q Consensus       112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~  191 (224)
                      -..+.+...|.+++++.              +|.+.++|+.++..-.   +.+.+|.++...+-.|+  +......++.+
T Consensus       291 P~yl~~~~YEsir~n~~--------------RV~ihha~~iE~l~~k---~ag~Vdr~iLlDaqdwm--td~qln~lws~  351 (414)
T COG5379         291 PAYLDEGVYESIRQNLR--------------RVAIHHADIIELLAGK---PAGNVDRYILLDAQDWM--TDGQLNSLWSE  351 (414)
T ss_pred             ChhhchhhHHHHHhhhh--------------heeeecccHHHHhccC---CCCCcceEEEecchhhc--ccchHHHHHHH
Confidence            45566666777777655              4888999987764311   46899999999998888  55668999999


Q ss_pred             HHhhccCCeEEEEEe
Q 027388          192 VSALLRPGGTFIGTM  206 (224)
Q Consensus       192 ~~~~lk~gG~li~~~  206 (224)
                      +.+.+.+|..+|+.+
T Consensus       352 isrta~~gA~VifRt  366 (414)
T COG5379         352 ISRTAEAGARVIFRT  366 (414)
T ss_pred             HhhccCCCcEEEEec
Confidence            999999999999864

>TIGR00518 alaDH alanine dehydrogenase

Probab=81.73  E-value=3.1  Score=35.16  Aligned_cols=44  Identities=14%  Similarity=0.098  Sum_probs=29.6

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhc
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY  127 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~  127 (224)
                      ++.+|+=+|+|. |..+...+.....+++.+|.++...+.+...+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~  210 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF  210 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc
Confidence            456788888874 44555555444558999999987766665443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=81.56  E-value=6.7  Score=32.33  Aligned_cols=99  Identities=14%  Similarity=0.288  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHHhhcCCCe--EEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCee
Q 027388           69 LNNWIKSVLVQLYARRGDV--VLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR  145 (224)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~--iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~  145 (224)
                      +..|+..++......++..  =+|||.|..-+-..+... ..-.++++|+....++.|+.++.        +.++...++
T Consensus        85 YihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~--------qn~lss~ik  156 (419)
T KOG2912|consen   85 YIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVE--------QNNLSSLIK  156 (419)
T ss_pred             hHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccc--------cccccccee
Confidence            5566776665442222222  368877664322222111 33467799999999999999988        345566677


Q ss_pred             EEeccccccccccccC--CCCCeeEEEEcccc
Q 027388          146 LICGDCYEVHLDKVLA--DDAPFDICSCQFAM  175 (224)
Q Consensus       146 ~~~~d~~~~~~~~~~~--~~~~~D~i~~~~~l  175 (224)
                      +++.......+.+...  ++.-||.+.|+-.+
T Consensus       157 vV~~~~~ktll~d~~~~~~e~~ydFcMcNPPF  188 (419)
T KOG2912|consen  157 VVKVEPQKTLLMDALKEESEIIYDFCMCNPPF  188 (419)
T ss_pred             eEEecchhhcchhhhccCccceeeEEecCCch
Confidence            6665433222221111  23458999887543

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=81.45  E-value=15  Score=29.03  Aligned_cols=46  Identities=24%  Similarity=0.138  Sum_probs=32.4

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCCe-EEEEeCChhHHHHHHHh
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTR  126 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~~  126 (224)
                      ...++.++|=.|+|. |..+..+++....+ +++++.++...+.+++.
T Consensus        94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~  141 (277)
T cd08255          94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL  141 (277)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence            345677888888765 55666666554455 99999999888876654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=81.13  E-value=6.6  Score=31.68  Aligned_cols=53  Identities=28%  Similarity=0.395  Sum_probs=42.7

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      .+.+.. ....+..|||.-+|+|..+... ......++|+|+++..++.+.+++.
T Consensus       213 ~r~i~~-~s~~~diVlDpf~GsGtt~~aa-~~~~r~~ig~e~~~~y~~~~~~r~~  265 (302)
T COG0863         213 ERLIRD-YSFPGDIVLDPFAGSGTTGIAA-KNLGRRFIGIEINPEYVEVALKRLQ  265 (302)
T ss_pred             HHHHHh-cCCCCCEEeecCCCCChHHHHH-HHcCCceEEEecCHHHHHHHHHHHH
Confidence            334433 5678899999999999777654 4566789999999999999999986

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=81.05  E-value=8.1  Score=31.66  Aligned_cols=101  Identities=20%  Similarity=0.190  Sum_probs=57.7

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+||-.|+|. |..+..+++....+++++..++...+.+++...            ..-+.....++.+. +...
T Consensus       156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~------------~~v~~~~~~~~~~~-l~~~  222 (337)
T cd08261         156 GVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGA------------DDTINVGDEDVAAR-LREL  222 (337)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCC------------CEEecCcccCHHHH-HHHH
Confidence            446778888888764 667777776666788888888888877754321            00011111111000 0000


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      . ....+|+++....      .    ...+..+.+.|+++|.++..
T Consensus       223 ~-~~~~vd~vld~~g------~----~~~~~~~~~~l~~~G~~i~~  257 (337)
T cd08261         223 T-DGEGADVVIDATG------N----PASMEEAVELVAHGGRVVLV  257 (337)
T ss_pred             h-CCCCCCEEEECCC------C----HHHHHHHHHHHhcCCEEEEE
Confidence            0 2346899986421      1    12456778888899987743

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PLN02827 Alcohol dehydrogenase-like

Probab=80.52  E-value=15  Score=30.88  Aligned_cols=45  Identities=22%  Similarity=0.318  Sum_probs=31.4

Q ss_pred             hcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHh
Q 027388           82 ARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTR  126 (224)
Q Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~  126 (224)
                      ..++.+||=.|+|. |..+.++++.... .++++|.++...+.+++.
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l  237 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF  237 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            45788999888754 4455555554443 688999999888888543

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=80.24  E-value=25  Score=28.15  Aligned_cols=101  Identities=20%  Similarity=0.229  Sum_probs=47.3

Q ss_pred             hhcCCCeEEEecCCCch-------hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           81 YARRGDVVLDLACGKGG-------DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~-------~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ..+...+||.+|+|+--       .+.+++ ...+-++-.|+.+         +            ..+.-..+.+|...
T Consensus        58 aVP~nMrVlHlGAgSdkGvaPGt~VLrqwl-P~~ailvDnDi~d---------~------------vSDa~~~~~~Dc~t  115 (299)
T PF06460_consen   58 AVPHNMRVLHLGAGSDKGVAPGTAVLRQWL-PEDAILVDNDIRD---------Y------------VSDADQSIVGDCRT  115 (299)
T ss_dssp             ---TT-EEEEES---TTSB-HHHHHHHHHS--TT-EEEEEESS-----------------------B-SSSEEEES-GGG
T ss_pred             eeccCcEEEEecccccCCcCCchHHHHHhC-CCCcEEEecchhh---------h------------ccccCCceeccccc
Confidence            34678999999998732       122222 1233455566543         1            12224567888877


Q ss_pred             cccccccCCCCCeeEEEEccc---cccccC---CHHH-HHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          154 VHLDKVLADDAPFDICSCQFA---MHYSWS---TEAR-ARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~---l~~~~~---~~~~-~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      +..      +..+|+|++..-   ...+..   +.+. ..-+..-+...|+-||.+.+..-+.
T Consensus       116 ~~~------~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~  172 (299)
T PF06460_consen  116 YMP------PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEH  172 (299)
T ss_dssp             EEE------SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SS
T ss_pred             cCC------CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecc
Confidence            764      689999998764   111100   1111 2233455677888999999875443

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
1ri1_A	298	Structure And Mechanism Of Mrna Cap (Guanine N-7) M		7e-34
3bgv_A	313	Crystal Structure Of Mrna Cap Guanine-N7 Methyltran		4e-29
2vdw_A	302	Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12		1e-06

>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7) Methyltransferase Length = 298

Iteration: 1
 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 76/189 (40%), Positives = 116/189 (61%), Gaps = 12/189 (6%)
Query: 30  FLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVL 89
           F +D++ +    ++ +HY+    +  E R+ S  I+++  NN+IK+ L++LY +RGD VL
Sbjct: 10  FRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVL 69
Query: 90  DLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149
           DL CGKGGDL+K+++A IG Y G+DIAE SI D R R    A + +RR K  F A+    
Sbjct: 70  DLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR----ARNMKRRFKVFFRAQ---- 121
Query: 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209
           D Y  H+D        FD+ S QF+ HY++ST      A  N++  LRPGG FI T+P  
Sbjct: 122 DSYGRHMDL----GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177
Query: 210 NVIIKKLRE 218
           +VI+++ ++
Sbjct: 178 DVILERYKQ 186

>pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sah Length = 313

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 93/165 (56%), Gaps = 12/165 (7%)
Query: 61  SPIIHLKKLNNWIKSVLVQLY-------ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113
           S I +L+  NNW+KSVL+  +        +R   VLDL CGKGGDL+KW K +I   V  
Sbjct: 4   SRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCT 63
Query: 114 DIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-EVHLDKVLADDAPFDICSC 171
           DIA+ S++ C+ RY    D   RR  ++ F A  I  D   E+ +DK       FDICSC
Sbjct: 64  DIADVSVKQCQQRYE---DMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSC 120
Query: 172 QFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL 216
           QF  HYS+ +  +A   L N    L PGG FIGT P++  +I++L
Sbjct: 121 QFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRL 165

>pdb|2VDW|A Chain A, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of The Vaccinia Virus Mrna Capping Enzyme Length = 302

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 66  LKKLNNWIKSVLVQLYARRGDV-------VLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118
           L  L+N++K++L+ +Y  +  +       VL +  G G DL K+   +I   V  D    
Sbjct: 23  LGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDAD 82
Query: 119 SIEDCRTRYNG-DADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY 177
           +I     RYN  ++    +  KF +    I  D +   + +V      F+I   QFA+HY
Sbjct: 83  AIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY-FGKFNIIDWQFAIHY 141
Query: 178 SWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHFC 222
           S+     A   + N+S L   GG  + T  D + + K   ++ F 
Sbjct: 142 SFHPRHYA-TVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFI 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	3e-58
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	4e-55
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	3e-48
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	2e-15
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	6e-15
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	6e-14
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	1e-13
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-13
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	2e-13
3ocj_A	305	Putative exported protein; structural genomics, PS	3e-13
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	5e-13
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	8e-13
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	1e-12
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	2e-12
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-12
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	2e-12
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	3e-12
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	4e-12
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	1e-11
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	1e-11
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	3e-11
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	6e-11
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	7e-11
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	1e-10
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-10
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	3e-10
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	4e-10
3ege_A	261	Putative methyltransferase from antibiotic biosyn	7e-10
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	1e-09
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	2e-09
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	3e-09
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	4e-09
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	6e-09
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	7e-09
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	4e-08
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	6e-08
3lcc_A	235	Putative methyl chloride transferase; halide methy	6e-08
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	8e-08
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	8e-08
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	8e-08
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-07
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	1e-07
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	2e-07
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-07
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	2e-07
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	2e-07
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-07
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	3e-07
1xxl_A	239	YCGJ protein; structural genomics, protein structu	4e-07
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	5e-07
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	5e-07
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	5e-07
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	7e-07
3i9f_A	170	Putative type 11 methyltransferase; structural gen	8e-07
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	8e-07
3f4k_A	257	Putative methyltransferase; structural genomics, P	2e-06
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	3e-06
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	3e-06
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	4e-06
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	1e-05
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	2e-05
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	5e-05
3cc8_A	230	Putative methyltransferase; structural genomics, j	7e-05
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	7e-05
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-04
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	2e-04
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	2e-04
1im8_A	244	YECO; methyltransferase, adenosylhomocysteine, str	8e-04

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score =  184 bits (469), Expect = 3e-58
 Identities = 72/195 (36%), Positives = 110/195 (56%), Gaps = 12/195 (6%)

Query: 30  FLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVL 89
           F +D++ +    ++ +HY+    +  E R+ S  I+++  NN+IK+ L++LY +RGD VL
Sbjct: 10  FRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVL 69

Query: 90  DLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149
           DL CGKGGDL+K+++A IG Y G+DIAE SI D R R            K  F       
Sbjct: 70  DLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARN--------MKRRFKVFFRAQ 121

Query: 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209
           D Y  H+D        FD+ S QF+ HY++ST      A  N++  LRPGG FI T+P  
Sbjct: 122 DSYGRHMDL----GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177

Query: 210 NVIIKKLREEHFCHS 224
           +VI+++ ++    + 
Sbjct: 178 DVILERYKQGRMSND 192

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score =  177 bits (449), Expect = 4e-55
 Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 11/186 (5%)

Query: 44  ADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARR-------GDVVLDLACGKG 96
           AD +      +    +      L  L+N++K++L+ +Y  +          VL +  G G
Sbjct: 2   ADKFRLNPEVSYFTNK-RTRGPLGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNG 60

Query: 97  GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK-KFSFPARLICGDCYEVH 155
            DL K+   +I   V  D    +I     RYN      + +  KF +    I  D +   
Sbjct: 61  ADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSS 120

Query: 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215
           + +V      F+I   QFA+HYS+     A   + N+S L   GG  + T  D + + K 
Sbjct: 121 VREVF-YFGKFNIIDWQFAIHYSFHPRHYA-TVMNNLSELTASGGKVLITTMDGDKLSKL 178

Query: 216 LREEHF 221
             ++ F
Sbjct: 179 TDKKTF 184

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score =  159 bits (403), Expect = 3e-48
 Identities = 67/169 (39%), Positives = 91/169 (53%), Gaps = 10/169 (5%)

Query: 61  SPIIHLKKLNNWIKSVLVQLYAR-------RGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113
           S I +L+  NNW+KSVL+  +         R   VLDL CGKGGDL+KW K +I   V  
Sbjct: 4   SRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCT 63

Query: 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLADDAPFDICSCQ 172
           DIA+ S++ C+ RY      ++R  ++ F A  I  D  +  L DK       FDICSCQ
Sbjct: 64  DIADVSVKQCQQRYED--MKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQ 121

Query: 173 FAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHF 221
           F  HYS+ +  +A   L N    L PGG FIGT P++  +I++L     
Sbjct: 122 FVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASET 170

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 22/135 (16%)

Query: 71  NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNG 129
           ++++ +  +   R    VLDLACG G   ++   A+ GY V G+D+ E  +   R     
Sbjct: 28  DFVEEIFKEDAKREVRRVLDLACGTGIPTLEL--AERGYEVVGLDLHEEMLRVAR----- 80

Query: 130 DADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRA 188
                ++ K+ +     + GD  E+           FD  +  F  + Y    E   R+ 
Sbjct: 81  -----RKAKERNLKIEFLQGDVLEIAFKN------EFDAVTMFFSTIMY--FDEEDLRKL 127

Query: 189 LANVSALLRPGGTFI 203
            + V+  L+PGG FI
Sbjct: 128 FSKVAEALKPGGVFI 142

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 70.5 bits (173), Expect = 6e-15
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 21/147 (14%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
                    D  LDLACG G                 +D+++  + +             
Sbjct: 30  KCVENNLVFDDYLDLACGTGNLTENL--CPKFKNTWAVDLSQEMLSEAE----------N 77

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSA 194
           + +      RL C D   +++++       FD+ +C   + +Y        ++    VS 
Sbjct: 78  KFRSQGLKPRLACQDISNLNINR------KFDLITCCLDSTNY-IIDSDDLKKYFKAVSN 130

Query: 195 LLRPGGTFIGTMPDANVIIKKLREEHF 221
            L+ GG FI  +     + + L    F
Sbjct: 131 HLKEGGVFIFDINSYYKLSQVLGNNDF 157

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 66.7 bits (163), Expect = 6e-14
 Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 24/145 (16%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
           L+   A RG  +LD  CG+G        +K G+ V G D+    I+  +  +        
Sbjct: 39  LIDAMAPRGAKILDAGCGQGRIGGYL--SKQGHDVLGTDLDPILIDYAKQDFPE------ 90

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
                   AR + GD     +      +  FD+      +   +  E     ALAN+   
Sbjct: 91  --------ARWVVGDLSVDQI-----SETDFDLIVSAGNVMG-FLAEDGREPALANIHRA 136

Query: 196 LRPGGTF-IGTMPDANVIIKKLREE 219
           L   G   IG       +     E 
Sbjct: 137 LGADGRAVIGFGAGRGWVFGDFLEV 161

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 66.8 bits (163), Expect = 1e-13
 Identities = 27/170 (15%), Positives = 47/170 (27%), Gaps = 31/170 (18%)

Query: 34  ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLAC 93
           E   +F    A  Y        +       I  K++    + +L  +  +    VL+   
Sbjct: 4   EFNGLFDE-WAHTY--------DSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGV 54

Query: 94  GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153
           G  G+L            GI+ +       + +   +               +  GD   
Sbjct: 55  GT-GNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKE-------------FSITEGDFLS 100

Query: 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
                        D     +A H    T+     A+A  S LL  GG  +
Sbjct: 101 ------FEVPTSIDTIVSTYAFH--HLTDDEKNVAIAKYSQLLNKGGKIV 142

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 33/173 (19%)

Query: 33  DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLA 92
            E  + F   V+  Y  +       R+  P       + +  SV +         +LDL 
Sbjct: 4   SEIKRKFD-AVSGKYDEQ------RRKFIPCFD----DFYGVSVSIASVDTENPDILDLG 52

Query: 93  CGKGGDLIKW--DKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150
            G  G L  +  +K     +  +D++E  +E  + R+ G+              + I  D
Sbjct: 53  AG-TGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-----------KVKYIEAD 100

Query: 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
             +   ++       +D+     ++H     +   +       ++L+  G FI
Sbjct: 101 YSKYDFEE------KYDMVVSALSIH--HLEDEDKKELYKRSYSILKESGIFI 145

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 25/129 (19%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
           LV+        +LD+ACG G  L  +   K      G++++E  +   R R         
Sbjct: 33  LVRSRTPEASSLLDVACGTGTHLEHF--TKEFGDTAGLELSEDMLTHARKRLPD------ 84

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSA 194
                   A L  GD  +  L +       F      F ++ Y   T      A+A+ + 
Sbjct: 85  --------ATLHQGDMRDFRLGR------KFSAVVSMFSSVGY-LKTTEELGAAVASFAE 129

Query: 195 LLRPGGTFI 203
            L PGG  +
Sbjct: 130 HLEPGGVVV 138

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 66.3 bits (161), Expect = 3e-13
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 17/129 (13%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHH 134
            +Q + R G VV  + CG   +L+  D +       VGID    +++             
Sbjct: 111 ALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLA------- 163

Query: 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194
                 +    L   D ++      L     +D+ +      Y    +AR          
Sbjct: 164 -AGHALAGQITLHRQDAWK------LDTREGYDLLTSNGLNIYE-PDDARVTELYRRFWQ 215

Query: 195 LLRPGGTFI 203
            L+PGG  +
Sbjct: 216 ALKPGGALV 224

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 78  VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQR 136
           V      G  + D+ CG G   +        Y V G+D++E  +E  +          ++
Sbjct: 27  VLEQVEPGKRIADIGCGTGTATLLLAD---HYEVTGVDLSEEMLEIAQ----------EK 73

Query: 137 RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSAL 195
             + +        D  E+ L +      P D  +    +++Y   TEA  ++   + + L
Sbjct: 74  AMETNRHVDFWVQDMRELELPE------PVDAITILCDSLNYLQ-TEADVKQTFDSAARL 126

Query: 196 LRPGGTFIGTMPDANVIIKKLREEHF 221
           L  GG  +  +     +      + +
Sbjct: 127 LTDGGKLLFDVHSPYKMETLFNGKTY 152

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 65.0 bits (158), Expect = 8e-13
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 28/178 (15%)

Query: 31  LEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLD 90
           + D+     A +V   Y   T     E              +   +L  L       VLD
Sbjct: 18  IPDQYADGEAARVWQLYIGDTRSRTAE--------------YKAWLLGLLRQHGCHRVLD 63

Query: 91  LACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149
           +ACG G D I     + G+ V  +D ++  ++               R+K     + +  
Sbjct: 64  VACGTGVDSIML--VEEGFSVTSVDASDKMLKYALKER-------WNRRKEPAFDKWVIE 114

Query: 150 DCYEVHLDKVLADDAPFDICSCQFA----MHYSWSTEARARRALANVSALLRPGGTFI 203
           +   + LDK +     FD   C       +  S   ++  R AL N+++++RPGG  +
Sbjct: 115 EANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 24/203 (11%)

Query: 3   RGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASP 62
             H        G  + + ++ P    H     ++      + D Y      T  +     
Sbjct: 7   HHHHSGGLVPRGSMSNQLERGPVRTPHADVLLASVGERGVLCDFYDEGAADTYRD----- 61

Query: 63  IIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIE 121
           +I      +  +             VL+LA G G     +    +G+ V  ++++   + 
Sbjct: 62  LIQDADGTSEAR-EFATRTGPVSGPVLELAAGMGRLTFPF--LDLGWEVTALELSTSVLA 118

Query: 122 DCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWS 180
             R R        + R        L+ GD     LDK       F        +++    
Sbjct: 119 AFRKRLAEAPADVRDR------CTLVQGDMSAFALDK------RFGTVVISSGSINEL-- 164

Query: 181 TEARARRALANVSALLRPGGTFI 203
            EA  R   A+V   L PGG F+
Sbjct: 165 DEADRRGLYASVREHLEPGGKFL 187

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 21/120 (17%)

Query: 84  RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143
            G  ++DL CG G       +    Y +G+D++E  +   R                   
Sbjct: 43  GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG------------ 90

Query: 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
                 D  ++HL         FD+     A+HY         R    V   L PGG F+
Sbjct: 91  ITYERADLDKLHL-----PQDSFDLAYSSLALHYV----EDVARLFRTVHQALSPGGHFV 141

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 32/181 (17%)

Query: 42  KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
           +V   Y+   +Q    R              ++ +L++ Y ++   VLDLACG GG    
Sbjct: 8   RVFPTYTDINSQEYRSRIE-----------TLEPLLMK-YMKKRGKVLDLACGVGGFSFL 55

Query: 102 WDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160
                 G+ V G+DI+E  I   R          +  K        I GD  ++      
Sbjct: 56  L--EDYGFEVVGVDISEDMIRKAR----------EYAKSRESNVEFIVGDARKLSF---- 99

Query: 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH 220
            +D  FD      ++ + +       +    V  +L+P G FI    D   ++ +L+E  
Sbjct: 100 -EDKTFDYVIFIDSIVH-F-EPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESL 156

Query: 221 F 221
            
Sbjct: 157 V 157

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 25/129 (19%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
           LV+ ++ +   +LD+ACG G  L     A     V G++++   +   R R         
Sbjct: 43  LVRRHSPKAASLLDVACGTGMHLRHL--ADSFGTVEGLELSADMLAIARRRNPD------ 94

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSA 194
                   A L  GD  +  L +       F   +C F ++ +  + +A    AL   +A
Sbjct: 95  --------AVLHHGDMRDFSLGR------RFSAVTCMFSSIGH-LAGQAELDAALERFAA 139

Query: 195 LLRPGGTFI 203
            + P G  +
Sbjct: 140 HVLPDGVVV 148

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 62.3 bits (151), Expect = 3e-12
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 19/171 (11%)

Query: 56  EEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW--DKAKIGYYVGI 113
           EE E    ++ ++L   + +VL  + A++   V+DL CG  G+L+             G+
Sbjct: 5   EETEKKLNLNQQRLG-TVVAVLKSVNAKK---VIDLGCG-EGNLLSLLLKDKSFEQITGV 59

Query: 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF 173
           D++   +E  + R   D     +RK+      L         L       + +D  +   
Sbjct: 60  DVSYSVLERAKDRLKIDRLPEMQRKR----ISLFQSS-----LVYRDKRFSGYDAATVIE 110

Query: 174 AMHYSWSTEARARRALANVSALLRPGGTFIGTM-PDANVIIKKLREEHFCH 223
            + +    E R +     +    RP    + T   + N     L E +  H
Sbjct: 111 VIEH--LDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRH 159

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 62.2 bits (151), Expect = 4e-12
 Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 21/174 (12%)

Query: 56  EEREASPIIHLKKL-NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW--DKAKIGYYVG 112
           EE      I L +   N + + L Q  ARR   V+DL CG  G+L+K     +      G
Sbjct: 3   EEAAVEKPISLNQQRMNGVVAALKQSNARR---VIDLGCG-QGNLLKILLKDSFFEQITG 58

Query: 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQ 172
           +D++  S+E  + R +       + ++     +LI G      L         +D  +  
Sbjct: 59  VDVSYRSLEIAQERLDRLRLPRNQWER----LQLIQGA-----LTYQDKRFHGYDAATVI 109

Query: 173 FAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA--NVIIKKLREEHFCHS 224
             + +     +R       +    +P    + T P+   NV    L      H 
Sbjct: 110 EVIEHL--DLSRLGAFERVLFEFAQPKIVIVTT-PNIEYNVKFANLPAGKLRHK 160

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 61.5 bits (149), Expect = 1e-11
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 21/120 (17%)

Query: 84  RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143
               VLDL CG G   I   +      +GID++E  + + + +                 
Sbjct: 44  NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVC---------- 93

Query: 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
                    ++ +     +   +++     A+HY     A        V   L+  G+FI
Sbjct: 94  --YEQKAIEDIAI-----EPDAYNVVLSSLALHY----IASFDDICKKVYINLKSSGSFI 142

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 31/137 (22%), Positives = 44/137 (32%), Gaps = 25/137 (18%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
           + + +L  L  + G+ +LDL CG G    K         +G D A   IE  R  Y    
Sbjct: 45  YGEDLLQLLNPQPGEFILDLGCGTGQLTEKI-AQSGAEVLGTDNAATMIEKARQNYPH-- 101

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
                             D            D P D       +H  W  E  A  A+A+
Sbjct: 102 ------------LHFDVADARN------FRVDKPLDAVFSNAMLH--WVKEPEA--AIAS 139

Query: 192 VSALLRPGGTFIGTMPD 208
           +   L+ GG F+     
Sbjct: 140 IHQALKSGGRFVAEFGG 156

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 21/171 (12%), Positives = 50/171 (29%), Gaps = 28/171 (16%)

Query: 33  DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLA 92
            E+ K F +K A +    +                 +   I   ++  +       +D+ 
Sbjct: 3   SENKKKFDKKGAKNMDEISK-----------TLFAPIYPIIAENIINRFGITAGTCIDIG 51

Query: 93  CGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152
            G G   I   K        +D ++   E                   +   +++ GD +
Sbjct: 52  SGPGALSIALAKQSDFSIRALDFSKHMNEIALKN--------IADANLNDRIQIVQGDVH 103

Query: 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
            + +     +D   D+   + ++ +          A   +  +L+ GG   
Sbjct: 104 NIPI-----EDNYADLIVSRGSVFFW----EDVATAFREIYRILKSGGKTY 145

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 59.0 bits (143), Expect = 6e-11
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 22/130 (16%)

Query: 74  KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH 133
           +++L+ +  R+ + VLDL CG  G L++    +    VG+D     ++  R    G+   
Sbjct: 42  QAILLAILGRQPERVLDLGCG-EGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHL 100

Query: 134 HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193
                             Y    +  +     +D+    FA+ +           L+ + 
Sbjct: 101 AS----------------YAQLAEAKVPVGKDYDLICANFALLH-----QDIIELLSAMR 139

Query: 194 ALLRPGGTFI 203
            LL PGG  +
Sbjct: 140 TLLVPGGALV 149

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 58.3 bits (141), Expect = 7e-11
 Identities = 18/179 (10%), Positives = 46/179 (25%), Gaps = 37/179 (20%)

Query: 33  DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLA 92
           D+ +K ++              +   +              + ++         V+LD+ 
Sbjct: 3   DDVSKAYSS-PTFDAEALLGTVISAED------------PDRVLIEPWATGVDGVILDVG 49

Query: 93  CGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151
            G G        A +G+ + G++ A   +E  R  +                     G  
Sbjct: 50  SGTGRWTGHL--ASLGHQIEGLEPATRLVELARQTHPS--------------VTFHHGTI 93

Query: 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210
            ++           +      +++            AL  +   +  GG  + +     
Sbjct: 94  TDLSDS-----PKRWAGLLAWYSLI--HMGPGELPDALVALRMAVEDGGGLLMSFFSGP 145

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 58.1 bits (140), Expect = 1e-10
 Identities = 19/136 (13%), Positives = 34/136 (25%), Gaps = 30/136 (22%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQ 135
            +         VL+  CG G D  ++        +   D +   ++  R           
Sbjct: 41  WLSRLLTPQTRVLEAGCGHGPDAARF--GPQAARWAAYDFSPELLKLARANAPH------ 92

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
                   A +   +     L       APF +   +                +  +  L
Sbjct: 93  --------ADVYEWNGKG-ELP--AGLGAPFGLIVSRRG----------PTSVILRLPEL 131

Query: 196 LRPGGTFIGTMPDANV 211
             P   F+   P  NV
Sbjct: 132 AAPDAHFLYVGPRLNV 147

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 58.0 bits (140), Expect = 2e-10
 Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 41/189 (21%)

Query: 42  KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
             A+ +++ + +  +    S II              + Y ++   VLD+ CG G    K
Sbjct: 22  SSAEFWNQNSQEMWDSGSRSTIIPF-----------FEQYVKKEAEVLDVGCGDGYGTYK 70

Query: 102 WDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160
              ++ GY   G+DI+E  I+  + R  G                 I GD     L    
Sbjct: 71  L--SRTGYKAVGVDISEVMIQKGKERGEGP------------DLSFIKGDLS--SLP--F 112

Query: 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI------GTMPDANVIIK 214
            ++  F+      ++ ++        RAL  +  +L+  G            P  N   +
Sbjct: 113 ENEQ-FEAIMAINSLEWT----EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPR 167

Query: 215 KLREEHFCH 223
              ++  C+
Sbjct: 168 LYGKDVVCN 176

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 23/172 (13%), Positives = 43/172 (25%), Gaps = 37/172 (21%)

Query: 33  DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLA 92
            ES   + R  A  Y       ++    + +  L                     VL+LA
Sbjct: 8   IESQLSYYRARASEYDATFVPYMDSAAPAALERL-------------RAGNIRGDVLELA 54

Query: 93  CGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151
            G G        + +   V  +D +   I              +  +           D 
Sbjct: 55  SGTGYWTRHL--SGLADRVTALDGSAEMIA-------------EAGRHGLDNVEFRQQDL 99

Query: 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
           ++         D  +D       +      + R      +V + + PGG   
Sbjct: 100 FD------WTPDRQWDAVFFAHWLA--HVPDDRFEAFWESVRSAVAPGGVVE 143

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 57.9 bits (139), Expect = 4e-10
 Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 18/156 (11%)

Query: 53  QTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW---DKAKIGY 109
           + +E     P +  +++  +    + +  A     ++D  CG  G L+         +  
Sbjct: 694 ERMEAAFFKPPLSKQRVE-YALKHIRESSAST---LVDFGCG-SGSLLDSLLDYPTSLQT 748

Query: 110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDIC 169
            +G+DI+   +       +   +             +     Y+  + +  +     DI 
Sbjct: 749 IIGVDISPKGLARAAKMLHVKLNKEA--------CNVKSATLYDGSILEFDSRLHDVDIG 800

Query: 170 SCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205
           +C   + +    E +A      V +L  P    + T
Sbjct: 801 TCLEVIEH--MEEDQACEFGEKVLSLFHPKLLIVST 834

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 56.4 bits (136), Expect = 7e-10
 Identities = 22/163 (13%), Positives = 48/163 (29%), Gaps = 42/163 (25%)

Query: 42  KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
            +   YS+        R              + +++  L   +G V+ D+  G GG  + 
Sbjct: 7   SIGKQYSQT-------RVPDI--------RIVNAIINLLNLPKGSVIADIGAGTGGYSVA 51

Query: 102 WDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160
              A  G +V  ++ +    +                           G    + L    
Sbjct: 52  L--ANQGLFVYAVEPSIVMRQQAVVHPQ---------------VEWFTGYAENLAL---- 90

Query: 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
             D   D      A+H+ +S   ++ + +  +   +R G   +
Sbjct: 91  -PDKSVDGVISILAIHH-FSHLEKSFQEMQRI---IRDGTIVL 128

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 21/143 (14%)

Query: 67  KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125
            K  +  K  L ++  +   V +DL  G G ++ K     +  +Y+GID  + ++ D   
Sbjct: 7   TKTVDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISK 66

Query: 126 RYNGDADHHQRRKKFSFP-ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR 184
           +        ++  K        +      +               +   ++ + W T   
Sbjct: 67  K------IIKKPSKGGLSNVVFVIAAAESL--------PFELKNIADSISILFPWGTLLE 112

Query: 185 ARR-----ALANVSALLRPGGTF 202
                    L+NV+ L +    F
Sbjct: 113 YVIKPNRDILSNVADLAKKEAHF 135

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 27/181 (14%), Positives = 43/181 (23%), Gaps = 37/181 (20%)

Query: 31  LEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLD 90
           +E + T+ F       Y        E +  S           +   L +L    G  +L+
Sbjct: 1   MEPDMTQAFDDDTLRFYRGNATAYAERQPRSA---------TLTKFLGEL--PAGAKILE 49

Query: 91  LACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149
           L CG G           G+ V   D +     +   R               F       
Sbjct: 50  LGCGAGYQAEAM--LAAGFDVDATDGSPELAAEASRRLGRPVRT------MLFHQ----- 96

Query: 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209
                     L     +D       +             L  +   L+PGG F  +    
Sbjct: 97  ----------LDAIDAYDAVWAHACLL--HVPRDELADVLKLIWRALKPGGLFYASYKSG 144

Query: 210 N 210
            
Sbjct: 145 E 145

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203

 Score = 54.0 bits (129), Expect = 3e-09
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 6/140 (4%)

Query: 65  HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDC 123
           H  ++N  ++     L    G  VL   CGK  D+     +  GY+V G +++E ++E  
Sbjct: 3   HQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWL--SGQGYHVVGAELSEAAVERY 60

Query: 124 RTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA 183
            T          +     + A  I   C +        D         + AM        
Sbjct: 61  FTERGEQPHITSQGDFKVYAAPGIEIWCGDF-FALTARDIGHCAAFYDRAAMI--ALPAD 117

Query: 184 RARRALANVSALLRPGGTFI 203
              R + ++ AL+    + +
Sbjct: 118 MRERYVQHLEALMPQACSGL 137

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 54.7 bits (131), Expect = 4e-09
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 8/131 (6%)

Query: 75  SVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDAD 132
           S L    +  G  VLDL CG G D+    K   + G  +G+D+ +  +E  R      A+
Sbjct: 74  STLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAE 133

Query: 133 HHQRRKKFSFPARLICGDCYEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
                   S   R + G    +   +     D+  DI       + S             
Sbjct: 134 KFFGSPSRS-NVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLS----TNKLALFKE 188

Query: 192 VSALLRPGGTF 202
           +  +LR GG  
Sbjct: 189 IHRVLRDGGEL 199

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 53.0 bits (127), Expect = 6e-09
 Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 19/129 (14%)

Query: 83  RRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFS 141
                VLD   G     +     + GY   GI+I++  ++                ++ +
Sbjct: 22  NLDKTVLDCGAGGDLPPL-SIFVEDGYKTYGIEISDLQLKKAE----------NFSRENN 70

Query: 142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT 201
           F   +  GD  ++        D           + +    +   + A+  +  +L+PGG 
Sbjct: 71  FKLNISKGDIRKLPF-----KDESMSFVYSYGTIFHMRKND--VKEAIDEIKRVLKPGGL 123

Query: 202 FIGTMPDAN 210
                    
Sbjct: 124 ACINFLTTK 132

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 25/166 (15%), Positives = 48/166 (28%), Gaps = 38/166 (22%)

Query: 38  VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGG 97
            FA  +A+ Y      T           +       +   ++     G+ +L++  G G 
Sbjct: 2   PFAS-LAEAYEA-WYGTP-----LGAYVI-----AEEERALKGLLPPGESLLEVGAGTGY 49

Query: 98  DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157
            L +    +    VG++ +E  +   R R                 A  +      +   
Sbjct: 50  WLRRLPYPQK---VGVEPSEAMLAVGRRRAPE--------------ATWVRAWGEALPF- 91

Query: 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
                   FD+      + +         R L     +LRPGG  +
Sbjct: 92  ----PGESFDVVLLFTTLEFV----EDVERVLLEARRVLRPGGALV 129

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 51.6 bits (123), Expect = 4e-08
 Identities = 18/167 (10%), Positives = 44/167 (26%), Gaps = 21/167 (12%)

Query: 67  KKLNNWIKSVLVQLYARRGDV-----VLDLACGKGG-------DLIKWDKAKIGYYVGID 114
           + +  ++   L  +  R GD      +L +  G G         +             ++
Sbjct: 30  QCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVE 89

Query: 115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFA 174
            +   I   +             +   F         Y+  + +       +D       
Sbjct: 90  PSAEQIAKYKEL----VAKTSNLENVKFAWHKETSSEYQSRMLEKKELQ-KWDFIHMIQM 144

Query: 175 MHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHF 221
           ++Y     A     L    +LL      +  +   +    KL +++ 
Sbjct: 145 LYYVKDIPA----TLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYG 187

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 25/141 (17%), Positives = 35/141 (24%), Gaps = 31/141 (21%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIK----WDKAKIGYYVGIDIAEGSIEDCRTRY 127
             + +L Q+   R     DL CG G         +    I    GID  +  +E    R 
Sbjct: 21  PARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVI---TGIDSDDDMLEKAADRL 77

Query: 128 NGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARR 187
                                 D                D+          W  +  A  
Sbjct: 78  PN--------------TNFGKADLAT------WKPAQKADLLYANAVFQ--WVPDHLA-- 113

Query: 188 ALANVSALLRPGGTFIGTMPD 208
            L+ +   L  GG     MPD
Sbjct: 114 VLSQLMDQLESGGVLAVQMPD 134

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 50.8 bits (121), Expect = 6e-08
 Identities = 23/143 (16%), Positives = 39/143 (27%), Gaps = 20/143 (13%)

Query: 65  HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDC 123
              +    I  ++       G   L   CG G D++    A    +V G+DI+E ++   
Sbjct: 48  DQGRATPLIVHLVDTSSLPLGRA-LVPGCGGGHDVVAM--ASPERFVVGLDISESALAKA 104

Query: 124 RTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA 183
              Y                   +  D +             FD+               
Sbjct: 105 NETYGSSPKAEY--------FSFVKEDVFT------WRPTELFDLIFDYVFFCAI--EPE 148

Query: 184 RARRALANVSALLRPGGTFIGTM 206
                  ++  LL+P G  I  M
Sbjct: 149 MRPAWAKSMYELLKPDGELITLM 171

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR 136
           ++  Y +  D +LD+ CG  G +     +K     GIDI   +I    T       + + 
Sbjct: 23  IIHNYLQEDDEILDIGCG-SGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKT 81

Query: 137 RKKFSFPARLICGDCYEVHLDKVLA-DDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
             K  F       +         L+  D+ FD    Q  +      + R+ R +  V  +
Sbjct: 82  GGKAEF----KVENASS------LSFHDSSFDFAVMQAFLTSVPDPKERS-RIIKEVFRV 130

Query: 196 LRPGGTFI 203
           L+PG    
Sbjct: 131 LKPGAYLY 138

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 50.4 bits (120), Expect = 8e-08
 Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 17/128 (13%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
             +L       ++D ACG G        ++    V G+D+++ ++E              
Sbjct: 49  RFELLFNPELPLIDFACGNGTQTKFL--SQFFPRVIGLDVSKSALEIAAKENTAAN---- 102

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
                         D         +  +        +   H       +      ++  L
Sbjct: 103 --------ISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFH--HIPVEKRELLGQSLRIL 152

Query: 196 LRPGGTFI 203
           L   G   
Sbjct: 153 LGKQGAMY 160

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 23/169 (13%), Positives = 41/169 (24%), Gaps = 35/169 (20%)

Query: 37  KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKG 96
             F                  R                 VL +   + G  VLD+  G G
Sbjct: 5   HKFDPSKIKKLDD------PSRLELFDPE---------KVLKEFGLKEGMTVLDVGTGAG 49

Query: 97  GDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154
             L    K   + G    ID+ E  +     +          +        ++  +  ++
Sbjct: 50  FYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEK--------VNKLGLK-NVEVLKSEENKI 100

Query: 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
            L      D   D     F  H      +   + L  +  + +P     
Sbjct: 101 PL-----PDNTVDFIFMAFTFHEL----SEPLKFLEELKRVAKPFAYLA 140

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 24/143 (16%)

Query: 70  NNWIKSVLVQLYA--RRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRT 125
           N+   S LV       +   ++D  CG G   +       +   Y GID  E  + + R 
Sbjct: 6   NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE 65

Query: 126 RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARA 185
            +          +   + +  + GD  E      +  +  +DI  C   + +        
Sbjct: 66  LF----------RLLPYDSEFLEGDATE------IELNDKYDIAICHAFLLHM----TTP 105

Query: 186 RRALANVSALLRPGGTFIGTMPD 208
              L  +   ++ GG  I   P 
Sbjct: 106 ETMLQKMIHSVKKGGKIICFEPH 128

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 19/132 (14%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
            +  ++     +  + VLD+A G GG +       +   V  D+ E  ++  R    G+ 
Sbjct: 25  DLAKLMQIAALKGNEEVLDVATG-GGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG 83

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
                          + GD  ++        D  F I +C+ A H+           ++ 
Sbjct: 84  HQQ---------VEYVQGDAEQMPF-----TDERFHIVTCRIAAHHF----PNPASFVSE 125

Query: 192 VSALLRPGGTFI 203
              +L+ GG  +
Sbjct: 126 AYRVLKKGGQLL 137

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 31/140 (22%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYY--VGIDIAEGSIEDCRTRYNGDADHH 134
           L++   R  D +L L CG        +    G+     +D +   +   +  Y       
Sbjct: 35  LLEPELRPEDRILVLGCGNSALSY--ELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQL- 91

Query: 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY-----------SWSTEA 183
                     R    D  ++         A FD+   +  +             S     
Sbjct: 92  ----------RWETMDVRKLDFP-----SASFDVVLEKGTLDALLAGERDPWTVSSEGVH 136

Query: 184 RARRALANVSALLRPGGTFI 203
              + L+ VS +L PGG FI
Sbjct: 137 TVDQVLSEVSRVLVPGGRFI 156

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 20/134 (14%)

Query: 74  KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH 133
           + + + L +      L++ C   G   +           ID+   +I     R    +  
Sbjct: 41  QLLRLSLSSGAVSNGLEIGCA-AGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSH- 98

Query: 134 HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193
                           D  +       +    FD+      ++Y      + R A+ N+ 
Sbjct: 99  ----------ISWAATDILQ------FSTAELFDLIVVAEVLYY-LEDMTQMRTAIDNMV 141

Query: 194 ALLRPGGT-FIGTM 206
            +L PGG    G+ 
Sbjct: 142 KMLAPGGHLVFGSA 155

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 10/129 (7%)

Query: 74  KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDA 131
            ++      + G+ +L++ CG+G             G+  GIDIA        T   G A
Sbjct: 33  LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTL--GQA 90

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
            +H           +         L  +   D  FD      ++ Y     A A      
Sbjct: 91  WNHLLAGPLGDRLTVHFNTNLSDDLGPI--ADQHFDRVVLAHSLWYF----ASANALALL 144

Query: 192 VSALLRPGG 200
              +     
Sbjct: 145 FKNMAAVCD 153

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 26/168 (15%), Positives = 41/168 (24%), Gaps = 35/168 (20%)

Query: 38  VFARKVADHYSR-RTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKG 96
              R  A  Y R R +      +                           V L+L  G G
Sbjct: 4   ALLR-AAYAYDRLRAHPPEVAGQI-----------ATAMASAVHPKGEEPVFLELGVGTG 51

Query: 97  GDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155
              +       GY    +D     +E  R +  G               +++  D   + 
Sbjct: 52  RIALPL--IARGYRYIALDADAAMLEVFRQKIAGVDR----------KVQVVQADARAIP 99

Query: 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
           L      D            H          + LA    +L+PGG  +
Sbjct: 100 L-----PDESVHGVIVVHLWHLV----PDWPKVLAEAIRVLKPGGALL 138

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 15/130 (11%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHH 134
           + + +     +++D+ CG G   ++  +        +G D++   I+       G  D +
Sbjct: 29  IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY 88

Query: 135 QRRKKFSFPARLICGDCYEVHLDKVL-ADDAPFDICSCQFAMHYSWSTEARARRALANVS 193
           +                 +         D    D+ +     H+         +   +  
Sbjct: 89  KN-------VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHW-----FDFEKFQRSAY 136

Query: 194 ALLRPGGTFI 203
           A LR  GT  
Sbjct: 137 ANLRKDGTIA 146

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 29/152 (19%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
            I S L + Y +    VLDL  G  G    + + +    V +D ++  +E  R +     
Sbjct: 43  LIGSFLEE-YLKNPCRVLDLGGG-TGKWSLFLQERGFEVVLVDPSKEMLEVAREKG---- 96

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICS--CQFAMHYSWSTEARARRAL 189
                         ++             A+D PF   +     A+    S      +A 
Sbjct: 97  -----------VKNVVEAK----------AEDLPFPSGAFEAVLALGDVLSYVENKDKAF 135

Query: 190 ANVSALLRPGGTFIGTMPDANVIIKKLREEHF 221
           + +  +L P G  I T+ +    ++++ E+  
Sbjct: 136 SEIRRVLVPDGLLIATVDNFYTFLQQMIEKDA 167

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 19/132 (14%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
            +  ++     R    VLD+  G  G         +   +G+D  +  +E   +      
Sbjct: 9   SLGLMIKTAECRAEHRVLDIGAG-AGHTALAFSPYVQECIGVDATKEMVEVASSF----- 62

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
               + K      R   G    +        D  FDI +C++A H+     +  R+A+  
Sbjct: 63  ---AQEKGVE-NVRFQQGTAESLPF-----PDDSFDIITCRYAAHHF----SDVRKAVRE 109

Query: 192 VSALLRPGGTFI 203
           V+ +L+  G F+
Sbjct: 110 VARVLKQDGRFL 121

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 18/121 (14%)

Query: 83  RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142
               ++ D+ CG GG  +       G   G+D   G I+          + + R+     
Sbjct: 45  TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFID--------IFNRNARQSGLQN 96

Query: 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202
               I G   ++        +   D+   + A++          R L      L+ GG  
Sbjct: 97  RVTGIVGSMDDLPF-----RNEELDLIWSEGAIYNI-----GFERGLNEWRKYLKKGGYL 146

Query: 203 I 203
            
Sbjct: 147 A 147

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 47.6 bits (113), Expect = 5e-07
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 25/135 (18%)

Query: 70  NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYN 128
           N+++ SV  Q+   +   +L LA G+G +      A +GY V  +D +   +   +    
Sbjct: 18  NDFLVSVANQIPQGK---ILCLAEGEGRNACFL--ASLGYEVTAVDQSSVGLAKAK---- 68

Query: 129 GDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRA 188
                 Q  ++       +  +     L         ++         +     +  ++ 
Sbjct: 69  ------QLAQEKGVKITTVQSN-----LADFDIVADAWEGI----VSIFCHLPSSLRQQL 113

Query: 189 LANVSALLRPGGTFI 203
              V   L+PGG FI
Sbjct: 114 YPKVYQGLKPGGVFI 128

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 19/133 (14%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGD 130
             K +        G  VL+  CG G   +   K         IDI+  S+E  R      
Sbjct: 25  LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAREN---- 80

Query: 131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190
                 +       + +  + + +       +D+ FD     F + +          AL 
Sbjct: 81  ----TEKNGIK-NVKFLQANIFSLPF-----EDSSFDHIFVCFVLEHL----QSPEEALK 126

Query: 191 NVSALLRPGGTFI 203
           ++  +L+PGGT  
Sbjct: 127 SLKKVLKPGGTIT 139

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 13/141 (9%)

Query: 68  KLNNWIKSV--LVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDC 123
            + N +      ++++ + GD V+D  CG G D         + G   G DI + +I + 
Sbjct: 4   TIKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANT 63

Query: 124 RTRYNGDADHHQRRKKFSFPARLICGD-CYEVHLDKVLADDAPFDICSCQFAMHYSWSTE 182
             +                   LI                   F++       H   +  
Sbjct: 64  TKKL--------TDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRP 115

Query: 183 ARARRALANVSALLRPGGTFI 203
               +AL+    LL  GG   
Sbjct: 116 ETTIQALSKAMELLVTGGIIT 136

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 35/132 (26%)

Query: 76  VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYN---GDA 131
            L  ++  +  V++D  CG G         +    +  IDI   ++++ + +++     +
Sbjct: 9   YLPNIFEGKKGVIVDYGCGNGFYCKYL--LEFATKLYCIDINVIALKEVKEKFDSVITLS 66

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
           D          P                   D   D      + H     +      ++ 
Sbjct: 67  DPK------EIP-------------------DNSVDFILFANSFHDMDDKQH----VISE 97

Query: 192 VSALLRPGGTFI 203
           V  +L+  G  I
Sbjct: 98  VKRILKDDGRVI 109

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 12/139 (8%)

Query: 66  LKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCR 124
           +K+  +     L +       +V+D   G G D      A +   V   D+ E ++    
Sbjct: 5   IKRPIHMSHDFLAE-VLDDESIVVDATMGNGNDTAFL--AGLSKKVYAFDVQEQALGKTS 61

Query: 125 TRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR 184
            R    +D      +      L   +  + ++ + +   A F++     A     +    
Sbjct: 62  QRL---SDLGIENTEL----ILDGHENLDHYVREPI-RAAIFNLGYLPSADKSVITKPHT 113

Query: 185 ARRALANVSALLRPGGTFI 203
              A+  +   L  GG   
Sbjct: 114 TLEAIEKILDRLEVGGRLA 132

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 24/124 (19%)

Query: 83  RRGDVVLDLACGKGG---DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK 139
                + D+ CG GG    L  + K +I    GID+    IE               +  
Sbjct: 45  TDDAKIADIGCGTGGQTLFLADYVKGQI---TGIDLFPDFIEIFNEN--------AVKAN 93

Query: 140 FSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199
            +   + I G    +        +   D+   + A++          R +   S  L+ G
Sbjct: 94  CADRVKGITGSMDNLPF-----QNEELDLIWSEGAIYN-----IGFERGMNEWSKYLKKG 143

Query: 200 GTFI 203
           G   
Sbjct: 144 GFIA 147

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 30/148 (20%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
           ++  +            +++  G  G      K K    +G++ +E   E  R R     
Sbjct: 35  YLSELQAVKCLLPEGRGVEIGVG-TGRFAVPLKIK----IGVEPSERMAEIARKR----- 84

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
                         ++ G    + L      D  FD       + +         RAL  
Sbjct: 85  -----------GVFVLKGTAENLPLK-----DESFDFALMVTTICFV----DDPERALKE 124

Query: 192 VSALLRPGGTFIGTMPDANVIIKKLREE 219
              +L+ GG  I  + D    + +  E+
Sbjct: 125 AYRILKKGGYLIVGIVDRESFLGREYEK 152

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 17/133 (12%)

Query: 71  NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGD 130
                ++  L  R GD VLD+ CG G   ++   A+     GI I+   +     R    
Sbjct: 48  RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANAR---- 103

Query: 131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190
                     +        D  ++       +DA FD      ++H+         RAL 
Sbjct: 104 ----ATAAGLANRVTFSYADAMDLPF-----EDASFDAVWALESLHHM----PDRGRALR 150

Query: 191 NVSALLRPGGTFI 203
            ++ +LRPGGT  
Sbjct: 151 EMARVLRPGGTVA 163

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 25/144 (17%)

Query: 67  KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI---GYYVGIDIAEGSIEDC 123
           K++  +  +   QL ++  DVVLD+  G G    K   A+       V +D  +  +E  
Sbjct: 10  KRVQEFSDAEFEQLRSQYDDVVLDVGTGDGKHPYKV--ARQNPSRLVVALDADKSRMEKI 67

Query: 124 RTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA 183
             +    A     +         +             A+  P      +  +   W +  
Sbjct: 68  SAK----AAAKPAKGGLPN-LLYLWAT----------AERLPPLSGVGELHVLMPWGSLL 112

Query: 184 RARR-----ALANVSALLRPGGTF 202
           R         L  ++A+ RPG +F
Sbjct: 113 RGVLGSSPEMLRGMAAVCRPGASF 136

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 31/147 (21%)

Query: 65  HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW-DKAKIGYYVGIDIAEGSIEDC 123
           H + L + I + L +    +   VLD+ CG+G     + D        G+D+++ +I+  
Sbjct: 66  HYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA 125

Query: 124 RTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA 183
             RY                        + +        D   D     +A     + E 
Sbjct: 126 AKRYPQ--------------VTFCVASSHRLPF-----SDTSMDAIIRIYAPC--KAEEL 164

Query: 184 RARRALANVSALLRPGGTFIGTMPDAN 210
                      +++PGG  I   P   
Sbjct: 165 A---------RVVKPGGWVITATPGPR 182

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 19/132 (14%), Positives = 34/132 (25%), Gaps = 18/132 (13%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
             ++ +  L        LD   G G                ++  +  +E+ +    G  
Sbjct: 81  GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM- 139

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
                  KF      I        L         +D+   Q+   Y   T+A   +   +
Sbjct: 140 ----PVGKF------ILASMETATLP-----PNTYDLIVIQWTAIYL--TDADFVKFFKH 182

Query: 192 VSALLRPGGTFI 203
               L P G   
Sbjct: 183 CQQALTPNGYIF 194

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 34/146 (23%)

Query: 66  LKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125
           L++   + K             VLD+ CG+G + ++  K +    +G+DI E  I+ C  
Sbjct: 32  LRRYIPYFKG---------CRRVLDIGCGRG-EFLELCKEEGIESIGVDINEDMIKFCEG 81

Query: 126 RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD-ICSCQFAMHYSWSTEAR 184
           ++N                 ++  D  E         D   D +    F  H       R
Sbjct: 82  KFN-----------------VVKSDAIEYLKSL---PDKYLDGVMISHFVEH---LDPER 118

Query: 185 ARRALANVSALLRPGGTFIGTMPDAN 210
               L+   + ++     +   P+  
Sbjct: 119 LFELLSLCYSKMKYSSYIVIESPNPT 144

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 22/169 (13%), Positives = 51/169 (30%), Gaps = 39/169 (23%)

Query: 61  SPIIHLKKLN--NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118
           + +   K  +  N +   L++   +    VLD+ C   G L    K       GI+    
Sbjct: 7   NSLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCS-SGALGAAIKENGTRVSGIEAFPE 65

Query: 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH-- 176
           + E  + + +                 ++ GD   + +     ++  FD           
Sbjct: 66  AAEQAKEKLD----------------HVVLGDIETMDMP---YEEEQFDCVIF---GDVL 103

Query: 177 ---YSWSTEARARRALANVSALLRPGGTFIGTMPDAN---VIIKKLREE 219
              +           +  V   ++  G  + ++P+ +   V+   L   
Sbjct: 104 EHLFDP------WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGN 146

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 16/121 (13%)

Query: 83  RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142
                 LD   G G    +           +DI E  +   +T      +  +R + +  
Sbjct: 78  TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYL---GEEGKRVRNY-- 132

Query: 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202
                C    +   +        +D+   Q+ + +   T+      L      LRP G  
Sbjct: 133 ----FCCGLQDFTPE-----PDSYDVIWIQWVIGH--LTDQHLAEFLRRCKGSLRPNGII 181

Query: 203 I 203
           +
Sbjct: 182 V 182

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 22/134 (16%), Positives = 37/134 (27%), Gaps = 24/134 (17%)

Query: 73  IKSVLVQLYARRGDVVLDLACGKGG---DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129
            K +L  +       VLD+  G GG    + +   A      GIDI    +     R   
Sbjct: 44  TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHT---HGIDICSNIVNMANER-VS 99

Query: 130 DADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRAL 189
             +                 D            +  FD+   + A+     +     +  
Sbjct: 100 GNNK----------IIFEANDILTKEF-----PENNFDLIYSRDAILA--LSLENKNKLF 142

Query: 190 ANVSALLRPGGTFI 203
                 L+P GT +
Sbjct: 143 QKCYKWLKPTGTLL 156

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 25/118 (21%), Positives = 36/118 (30%), Gaps = 22/118 (18%)

Query: 88  VLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146
            LDL CG G + +    A  GY V   D    SI +             +  +       
Sbjct: 36  TLDLGCGNGRNSLYL--AANGYDVDAWDKNAMSIANVERI---------KSIENLDNLHT 84

Query: 147 ICGDCYEVHLDKVLADDAPFD-ICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
              D         L  D  +D I S    M      +      +AN+    +PGG  +
Sbjct: 85  RVVDLNN------LTFDRQYDFILSTVVLMF--LEAKTI-PGLIANMQRCTKPGGYNL 133

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 25/127 (19%)

Query: 83  RRGDVVLDLACGKGGD---LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK 139
           +R    LDL  G GG    L++     I     ++IA    +            +  +  
Sbjct: 81  QRQAKGLDLGAGYGGAARFLVRKFGVSI---DCLNIAPVQNKRNE--------EYNNQAG 129

Query: 140 FSFPARLICGDCYEVHLDKVLADDAPFD-ICSCQFAMHYSWSTEARARRALANVSALLRP 198
            +    +  G   E+       +D  +D I S    +H          +     + +L+P
Sbjct: 130 LADNITVKYGSFLEIPC-----EDNSYDFIWSQDAFLHS-----PDKLKVFQECARVLKP 179

Query: 199 GGTFIGT 205
            G    T
Sbjct: 180 RGVMAIT 186

>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 29/173 (16%)

Query: 38  VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGG 97
           +F   VA+ +     +++                    +L + +      V DL C +G 
Sbjct: 21  IFDENVAEVFPDMIQRSVPGYSNI---------ITAIGMLAERFVTADSNVYDLGCSRGA 71

Query: 98  DLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154
             +   +         +GID ++  +E CR                  P  ++C D   V
Sbjct: 72  ATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA--------AYHSEIPVEILCNDIRHV 123

Query: 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207
                  +     +    F + +    +      L  +   L P G  + +  
Sbjct: 124 -------EIKNASMVILNFTLQFLPPED--RIALLTKIYEGLNPNGVLVLSEK 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.88
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.87
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.86
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.86
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.85
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.85
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.85
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.84
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.84
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.84
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.84
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.83
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.83
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.83
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.83
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.83
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.83
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.83
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.83
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.82
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.82
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.81
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.81
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.81
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.81
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.81
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.81
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.81
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.81
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.8
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.8
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.8
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.79
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.79
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.79
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.79
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.79
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.79
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.79
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.79
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.78
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.78
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.78
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.78
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.78
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.78
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.78
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.78
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.78
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.77
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.77
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.77
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.77
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.77
3ocj_A	305	Putative exported protein; structural genomics, PS	99.77
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.77
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.76
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.76
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.76
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.76
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.76
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.76
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.75
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.75
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.75
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.75
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.74
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.74
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.74
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.73
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.73
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.73
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.73
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.72
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.72
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.72
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.72
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.71
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.71
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.71
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.71
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.7
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.7
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.7
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.7
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.7
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.7
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.7
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.69
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.69
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.69
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.69
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.68
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.68
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.68
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.68
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.68
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.68
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.67
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.67
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.67
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.67
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.67
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.67
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.66
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.66
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.66
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.66
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.65
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.65
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.65
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.65
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.65
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.64
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.64
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.63
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.63
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.63
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.63
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.63
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.63
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.63
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.63
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.63
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.62
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.62
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.62
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.62
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.62
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.62
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.62
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.62
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.62
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.62
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.62
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.61
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.61
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.61
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.61
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.61
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.61
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.6
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.6
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.6
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.6
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.6
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.6
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.59
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.59
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.59
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.59
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.58
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.58
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.58
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.58
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.58
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.58
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.58
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.57
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.57
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.57
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.57
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.57
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.57
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.57
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.57
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.56
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.56
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.56
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.56
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.55
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.55
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.55
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.55
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.54
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.54
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.53
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.53
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.53
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.52
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.52
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.52
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.52
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.52
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.52
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.52
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.52
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.51
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.51
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.51
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.51
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.5
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.49
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.49
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.49
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.49
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.48
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.48
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.48
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.48
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.48
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.47
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.47
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.46
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.46
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.46
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.46
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.46
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.46
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.45
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.45
2o07_A	304	Spermidine synthase; structural genomics, structur	99.45
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.45
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.45
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.45
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.45
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.44
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.43
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.43
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.43
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.43
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.43
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.43
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.43
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.43
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.43
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.42
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.42
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.42
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.41
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.38
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.38
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.37
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.37
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.36
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.35
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.35
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.35
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.34
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.34
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.34
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.33
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.32
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.32
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.32
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.31
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.3
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.3
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.3
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.29
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.28
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.27
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.26
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.26
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.24
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.23
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.2
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.18
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.18
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.12
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.09
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.09
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.09
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.08
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.08
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.03
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	99.02
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.98
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.98
3lkd_A	542	Type I restriction-modification system methyltrans	98.97
3khk_A	544	Type I restriction-modification system methylation	98.96
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.95
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.95
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.91
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.85
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.84
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.83
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.82
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.82
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.8
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.72
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.72
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.66
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.64
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.59
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.57
3ufb_A	530	Type I restriction-modification system methyltran	98.57
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.53
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.52
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.52
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.5
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.45
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.43
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.35
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.2
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.14
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.89
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.89
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.75
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.72
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.7
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.64
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.62
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.59
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.57
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.48
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.46
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.44
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.32
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.29
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.2
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	97.15
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.93
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.62
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.58
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.29
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.22
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.21
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.18
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.12
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.1
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.08
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.97
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.86
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.77
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.71
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.66
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.56
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.52
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.47
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.43
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.38
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.35
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.34
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.25
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.09
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.07
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	94.95
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.94
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.88
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.87
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.83
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.82
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.82
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	94.8
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.78
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.75
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	94.74
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.69
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.57
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.55
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	94.39
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	94.38
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.35
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.32
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.3
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.25
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.25
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	94.23
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.22
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.21
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.91
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	93.73
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	93.71
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.61
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.56
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.48
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.28
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	93.24
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	93.21
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.18
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.16
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	93.03
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	92.98
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	92.75
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.71
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	92.68
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	92.53
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.51
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	92.33
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	92.28
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	92.25
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	91.94
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	91.87
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	91.8
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	91.56
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	91.56
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	91.51
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	91.49
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	91.35
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	91.31
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.1
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	90.99
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	90.9
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	90.76
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	90.53
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.37
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	90.19
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	89.96
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	89.91
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	89.2
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	89.17
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	89.1
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	88.92
1id1_A	153	Putative potassium channel protein; RCK domain, E.	88.81
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	88.49
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	86.45
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	86.37
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	86.28
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.99
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	84.88
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	84.69
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	84.4
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	84.09
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	83.92
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	83.91
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	83.34
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	82.79
1lnq_A	336	MTHK channels, potassium channel related protein;	82.29
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	81.82
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	81.81
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	81.11
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	80.47

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.88  E-value=1.3e-21  Score=157.38  Aligned_cols=144  Identities=45%  Similarity=0.783  Sum_probs=118.5

Q ss_pred             CceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC
Q 027388           62 PIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS  141 (224)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  141 (224)
                      ....+..+..|+...+......++.+|||||||+|.++..++.....+++|+|+|+.+++.|++++..        .+..
T Consensus        42 ~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~  113 (298)
T 1ri5_A           42 KTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARN--------MKRR  113 (298)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHT--------SCCS
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh--------cCCC
Confidence            33455677788877776666778899999999999999988766666999999999999999998762        2333


Q ss_pred             CCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhh
Q 027388          142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR  217 (224)
Q Consensus       142 ~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~  217 (224)
                      .++.++++|+.+.+..    ..++||+|++..+++|++.+..++..+++++.++|+|||.+++.+++...+...+.
T Consensus       114 ~~v~~~~~d~~~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  185 (298)
T 1ri5_A          114 FKVFFRAQDSYGRHMD----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYK  185 (298)
T ss_dssp             SEEEEEESCTTTSCCC----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHH
T ss_pred             ccEEEEECCccccccC----CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHc
Confidence            4689999999877541    35789999999999885557789999999999999999999999999888777655

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.87  E-value=3.3e-21  Score=152.64  Aligned_cols=108  Identities=21%  Similarity=0.415  Sum_probs=93.5

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      .+.++.+|||||||+|..+..+++.   ...+|+|||+|+.|++.|++++..        .+...+++++++|+.+++. 
T Consensus        67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~--------~~~~~~v~~~~~D~~~~~~-  137 (261)
T 4gek_A           67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA--------YKAPTPVDVIEGDIRDIAI-  137 (261)
T ss_dssp             HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHT--------SCCSSCEEEEESCTTTCCC-
T ss_pred             hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHh--------hccCceEEEeecccccccc-
Confidence            4678899999999999999998764   245899999999999999999762        3445679999999988764 


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                            +.||+|+++.+++|+  +..+...++++++++|||||+|++.
T Consensus       138 ------~~~d~v~~~~~l~~~--~~~~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          138 ------ENASMVVLNFTLQFL--EPSERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             ------CSEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------cccccceeeeeeeec--CchhHhHHHHHHHHHcCCCcEEEEE
Confidence                  569999999999998  6778889999999999999999986

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.86  E-value=8e-22  Score=154.38  Aligned_cols=123  Identities=15%  Similarity=0.173  Sum_probs=103.1

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ++.+|||||||+|.++..++.....+++++|+|+.+++.|++++...        + ..++.++++|+.+++.     ..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~-~~~~~~~~~d~~~~~~-----~~  144 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE--------G-KRVRNYFCCGLQDFTP-----EP  144 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGG--------G-GGEEEEEECCGGGCCC-----CS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhc--------C-CceEEEEEcChhhcCC-----CC
Confidence            57899999999999999887666669999999999999999997621        1 2358899999887765     45


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC-----------------ChHHHHHHhhhcccc
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP-----------------DANVIIKKLREEHFC  222 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~-----------------~~~~~~~~~~~~gf~  222 (224)
                      +.||+|++..+++|+  +.+....+++++.++|+|||+|++..+                 ....+.+.++++||.
T Consensus       145 ~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  218 (241)
T 2ex4_A          145 DSYDVIWIQWVIGHL--TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLS  218 (241)
T ss_dssp             SCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCC
T ss_pred             CCEEEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCe
Confidence            689999999999998  555677999999999999999999643                 457888999999985

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.86  E-value=8e-21  Score=147.85  Aligned_cols=143  Identities=15%  Similarity=0.248  Sum_probs=108.1

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHh-hcCCCeEEEecCCCchhHHHHHhhc-CCeEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKAK-IGYYV  111 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~  111 (224)
                      +...++|+..+..|+.......           .........++..+. ..++.+|||+|||+|.++..++... ..+++
T Consensus         4 ~~~~~~f~~~a~~y~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~   72 (234)
T 3dtn_A            4 SEIKRKFDAVSGKYDEQRRKFI-----------PCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFT   72 (234)
T ss_dssp             CSSCCCCCHHHHHHHHHHHHHC-----------TTHHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEE
T ss_pred             HHHHHHHHHHHHHHHHhHHHhC-----------cCHHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEE
Confidence            3445577777888875332211           112222333333332 4567899999999999999988664 56999


Q ss_pred             EEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHH
Q 027388          112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN  191 (224)
Q Consensus       112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~  191 (224)
                      |+|+|+.+++.|++++...          . ++.++++|+.+.+.      .+.||+|++..+++|+  +..+...++++
T Consensus        73 ~vD~s~~~~~~a~~~~~~~----------~-~~~~~~~d~~~~~~------~~~fD~v~~~~~l~~~--~~~~~~~~l~~  133 (234)
T 3dtn_A           73 LVDMSEKMLEIAKNRFRGN----------L-KVKYIEADYSKYDF------EEKYDMVVSALSIHHL--EDEDKKELYKR  133 (234)
T ss_dssp             EEESCHHHHHHHHHHTCSC----------T-TEEEEESCTTTCCC------CSCEEEEEEESCGGGS--CHHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHhhccC----------C-CEEEEeCchhccCC------CCCceEEEEeCccccC--CHHHHHHHHHH
Confidence            9999999999999997621          2 69999999988775      3899999999999998  55666789999


Q ss_pred             HHhhccCCeEEEEEe
Q 027388          192 VSALLRPGGTFIGTM  206 (224)
Q Consensus       192 ~~~~lk~gG~li~~~  206 (224)
                      +.++|+|||++++..
T Consensus       134 ~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          134 SYSILKESGIFINAD  148 (234)
T ss_dssp             HHHHEEEEEEEEEEE
T ss_pred             HHHhcCCCcEEEEEE
Confidence            999999999999875

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.85  E-value=1e-20  Score=151.63  Aligned_cols=152  Identities=20%  Similarity=0.227  Sum_probs=106.4

Q ss_pred             chhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEE
Q 027388           33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVG  112 (224)
Q Consensus        33 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~g  112 (224)
                      +......|+.++..|+............     .......+..++..+ ..++.+|||||||+|.++..++.. ..+++|
T Consensus        23 ~~~~~~~fd~~a~~y~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~g   95 (285)
T 4htf_A           23 NAMQDRNFDDIAEKFSRNIYGTTKGQLR-----QAILWQDLDRVLAEM-GPQKLRVLDAGGGEGQTAIKMAER-GHQVIL   95 (285)
T ss_dssp             ---------CHHHHHHSCTTSCHHHHHH-----HHHHHHHHHHHHHHT-CSSCCEEEEETCTTCHHHHHHHHT-TCEEEE
T ss_pred             ccccccchhhHHHHHHHHhccCCcchHH-----HHHHHHHHHHHHHhc-CCCCCEEEEeCCcchHHHHHHHHC-CCEEEE
Confidence            3445568899999998544333211110     011122233333333 234679999999999999998866 569999


Q ss_pred             EeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc-cccccCCCCCeeEEEEccccccccCCHHHHHHHHHH
Q 027388          113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN  191 (224)
Q Consensus       113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~  191 (224)
                      +|+|+.+++.|++++..        .++..++.++++|+.+++ .     ..++||+|++..+++|+    +++..++++
T Consensus        96 vD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~  158 (285)
T 4htf_A           96 CDLSAQMIDRAKQAAEA--------KGVSDNMQFIHCAAQDVASH-----LETPVDLILFHAVLEWV----ADPRSVLQT  158 (285)
T ss_dssp             EESCHHHHHHHHHHHHC---------CCGGGEEEEESCGGGTGGG-----CSSCEEEEEEESCGGGC----SCHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHh--------cCCCcceEEEEcCHHHhhhh-----cCCCceEEEECchhhcc----cCHHHHHHH
Confidence            99999999999999762        334456899999998876 3     46899999999999998    567899999


Q ss_pred             HHhhccCCeEEEEEeCC
Q 027388          192 VSALLRPGGTFIGTMPD  208 (224)
Q Consensus       192 ~~~~lk~gG~li~~~~~  208 (224)
                      +.++|+|||++++.+++
T Consensus       159 ~~~~LkpgG~l~~~~~~  175 (285)
T 4htf_A          159 LWSVLRPGGVLSLMFYN  175 (285)
T ss_dssp             HHHTEEEEEEEEEEEEB
T ss_pred             HHHHcCCCeEEEEEEeC
Confidence            99999999999998754

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.85  E-value=5.5e-20  Score=144.68  Aligned_cols=134  Identities=13%  Similarity=0.113  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      .+...++..+...++.+|||||||+|.++..++......++++|+|+.+++.+++++..           ..++.++++|
T Consensus        80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~~~~~d  148 (254)
T 1xtp_A           80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-----------MPVGKFILAS  148 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-----------SSEEEEEESC
T ss_pred             HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc-----------CCceEEEEcc
Confidence            44455555555567889999999999999988766666899999999999999998762           1458999999


Q ss_pred             ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC------------------ChHHH
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP------------------DANVI  212 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~------------------~~~~~  212 (224)
                      +..++.     +.++||+|++..+++|+  +..++..+++++.++|+|||++++..+                  ....+
T Consensus       149 ~~~~~~-----~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (254)
T 1xtp_A          149 METATL-----PPNTYDLIVIQWTAIYL--TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHY  221 (254)
T ss_dssp             GGGCCC-----CSSCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHH
T ss_pred             HHHCCC-----CCCCeEEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHH
Confidence            987765     46799999999999998  557899999999999999999999763                  23678


Q ss_pred             HHHhhhcccc
Q 027388          213 IKKLREEHFC  222 (224)
Q Consensus       213 ~~~~~~~gf~  222 (224)
                      ...++++||.
T Consensus       222 ~~~l~~aGf~  231 (254)
T 1xtp_A          222 KRLFNESGVR  231 (254)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHCCCE
Confidence            8899999985

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.85  E-value=5.9e-21  Score=145.51  Aligned_cols=155  Identities=11%  Similarity=0.045  Sum_probs=118.3

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv  113 (224)
                      +....+|+..+..|+.........        ......++..++    ...+.+|||+|||+|.++..++.. ..+++|+
T Consensus         3 ~~~~~~y~~~a~~y~~~~~~~~~~--------~~~~~~~l~~~~----~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gv   69 (203)
T 3h2b_A            3 DDVSKAYSSPTFDAEALLGTVISA--------EDPDRVLIEPWA----TGVDGVILDVGSGTGRWTGHLASL-GHQIEGL   69 (203)
T ss_dssp             CHHHHHHHCTTTCHHHHTCSSCCT--------TCTTHHHHHHHH----HHCCSCEEEETCTTCHHHHHHHHT-TCCEEEE
T ss_pred             HHHHHHHhhHHHHHHHHhhhhccc--------cHHHHHHHHHHh----ccCCCeEEEecCCCCHHHHHHHhc-CCeEEEE
Confidence            345678888888886443221100        011222233222    223889999999999999988765 4599999


Q ss_pred             eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHH
Q 027388          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS  193 (224)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~  193 (224)
                      |+|+.+++.++++..              ++.++++|+.+++.     +.+.||+|++..+++|+  +..++..+++++.
T Consensus        70 D~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~  128 (203)
T 3h2b_A           70 EPATRLVELARQTHP--------------SVTFHHGTITDLSD-----SPKRWAGLLAWYSLIHM--GPGELPDALVALR  128 (203)
T ss_dssp             CCCHHHHHHHHHHCT--------------TSEEECCCGGGGGG-----SCCCEEEEEEESSSTTC--CTTTHHHHHHHHH
T ss_pred             eCCHHHHHHHHHhCC--------------CCeEEeCccccccc-----CCCCeEEEEehhhHhcC--CHHHHHHHHHHHH
Confidence            999999999998854              48999999988775     56899999999999998  4457899999999


Q ss_pred             hhccCCeEEEEEeC------------------ChHHHHHHhhhcccc
Q 027388          194 ALLRPGGTFIGTMP------------------DANVIIKKLREEHFC  222 (224)
Q Consensus       194 ~~lk~gG~li~~~~------------------~~~~~~~~~~~~gf~  222 (224)
                      ++|+|||.+++.++                  ....+...++++||.
T Consensus       129 ~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  175 (203)
T 3h2b_A          129 MAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQ  175 (203)
T ss_dssp             HTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEE
T ss_pred             HHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCc
Confidence            99999999998753                  357888999999985

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.84  E-value=1.5e-20  Score=143.69  Aligned_cols=128  Identities=18%  Similarity=0.171  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccc---ccCCCCee
Q 027388           69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR---KKFSFPAR  145 (224)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~---~~~~~~v~  145 (224)
                      ....+..++..+...++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.|+++...........   .....+++
T Consensus         7 ~~~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g-~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~   85 (203)
T 1pjz_A            7 VNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE   85 (203)
T ss_dssp             STHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             CCHHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCC-CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccE
Confidence            33445555555555678899999999999999988664 499999999999999998754100000000   00124689


Q ss_pred             EEeccccccccccccCCC-CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          146 LICGDCYEVHLDKVLADD-APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       146 ~~~~d~~~~~~~~~~~~~-~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      ++++|+.+++.     .. ++||+|++..+++++  +.++...+++++.++|||||++++
T Consensus        86 ~~~~d~~~l~~-----~~~~~fD~v~~~~~l~~l--~~~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           86 IWCGDFFALTA-----RDIGHCAAFYDRAAMIAL--PADMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             EEEECCSSSTH-----HHHHSEEEEEEESCGGGS--CHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             EEECccccCCc-----ccCCCEEEEEECcchhhC--CHHHHHHHHHHHHHHcCCCcEEEE
Confidence            99999988775     22 689999999999988  667788899999999999998443

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.84  E-value=5e-20  Score=141.19  Aligned_cols=148  Identities=17%  Similarity=0.177  Sum_probs=118.1

Q ss_pred             chhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEE
Q 027388           33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVG  112 (224)
Q Consensus        33 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~g  112 (224)
                      +.....+|+..+..|......                ...+..++..  ..++.+|||+|||+|.++..++.. ..+++|
T Consensus        10 ~~~~~~~~~~~~~~y~~~~~~----------------~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~   70 (211)
T 3e23_A           10 DDDTLRFYRGNATAYAERQPR----------------SATLTKFLGE--LPAGAKILELGCGAGYQAEAMLAA-GFDVDA   70 (211)
T ss_dssp             CHHHHHHHHHSHHHHTTCCCC----------------CHHHHHHHTT--SCTTCEEEESSCTTSHHHHHHHHT-TCEEEE
T ss_pred             cHHHHHHHHHHHHHHhhccch----------------hHHHHHHHHh--cCCCCcEEEECCCCCHHHHHHHHc-CCeEEE
Confidence            355678899888888753332                1222223222  356789999999999999988765 459999


Q ss_pred             EeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHH
Q 027388          113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV  192 (224)
Q Consensus       113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~  192 (224)
                      +|+|+.+++.++++..               +.+.++|+..++      ..+.||+|++..+++|+  +.+++..+++++
T Consensus        71 vD~s~~~~~~a~~~~~---------------~~~~~~d~~~~~------~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~  127 (211)
T 3e23_A           71 TDGSPELAAEASRRLG---------------RPVRTMLFHQLD------AIDAYDAVWAHACLLHV--PRDELADVLKLI  127 (211)
T ss_dssp             EESCHHHHHHHHHHHT---------------SCCEECCGGGCC------CCSCEEEEEECSCGGGS--CHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHhcC---------------CceEEeeeccCC------CCCcEEEEEecCchhhc--CHHHHHHHHHHH
Confidence            9999999999998864               778889987766      36899999999999998  567899999999


Q ss_pred             HhhccCCeEEEEEeC-----------------ChHHHHHHhhhcc-cc
Q 027388          193 SALLRPGGTFIGTMP-----------------DANVIIKKLREEH-FC  222 (224)
Q Consensus       193 ~~~lk~gG~li~~~~-----------------~~~~~~~~~~~~g-f~  222 (224)
                      .++|+|||++++.++                 ....+...++++| |.
T Consensus       128 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~  175 (211)
T 3e23_A          128 WRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWA  175 (211)
T ss_dssp             HHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCS
T ss_pred             HHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcE
Confidence            999999999998744                 4568889999999 85

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.84  E-value=2.4e-20  Score=145.93  Aligned_cols=138  Identities=13%  Similarity=0.152  Sum_probs=94.1

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv  113 (224)
                      ....++|+..+..|......             .....++...+.  ...++.+|||||||+|.++..++... .+++|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gv   70 (250)
T 2p7i_A            7 NYDQEIKDTAGHKYAYNFDF-------------DVMHPFMVRAFT--PFFRPGNLLELGSFKGDFTSRLQEHF-NDITCV   70 (250)
T ss_dssp             ----------------CHHH-------------HTHHHHHHHHHG--GGCCSSCEEEESCTTSHHHHHHTTTC-SCEEEE
T ss_pred             CCCHHHHhhHHHHhcCccch-------------hhHHHHHHHHHH--hhcCCCcEEEECCCCCHHHHHHHHhC-CcEEEE
Confidence            33467888888777531111             111122222222  23467899999999999999887554 489999


Q ss_pred             eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHH
Q 027388          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS  193 (224)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~  193 (224)
                      |+|+.+++.|+++..            . ++.++++|+.+..      .+++||+|++..+++|+    +++..+++++.
T Consensus        71 D~s~~~~~~a~~~~~------------~-~v~~~~~d~~~~~------~~~~fD~v~~~~~l~~~----~~~~~~l~~~~  127 (250)
T 2p7i_A           71 EASEEAISHAQGRLK------------D-GITYIHSRFEDAQ------LPRRYDNIVLTHVLEHI----DDPVALLKRIN  127 (250)
T ss_dssp             ESCHHHHHHHHHHSC------------S-CEEEEESCGGGCC------CSSCEEEEEEESCGGGC----SSHHHHHHHHH
T ss_pred             eCCHHHHHHHHHhhh------------C-CeEEEEccHHHcC------cCCcccEEEEhhHHHhh----cCHHHHHHHHH
Confidence            999999999999876            2 5899999988763      46889999999999998    56789999999


Q ss_pred             -hhccCCeEEEEEeCChH
Q 027388          194 -ALLRPGGTFIGTMPDAN  210 (224)
Q Consensus       194 -~~lk~gG~li~~~~~~~  210 (224)
                       ++|||||++++.+++..
T Consensus       128 ~~~LkpgG~l~i~~~~~~  145 (250)
T 2p7i_A          128 DDWLAEGGRLFLVCPNAN  145 (250)
T ss_dssp             HTTEEEEEEEEEEEECTT
T ss_pred             HHhcCCCCEEEEEcCChH
Confidence             99999999999887643

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.84  E-value=3e-20  Score=145.19  Aligned_cols=156  Identities=19%  Similarity=0.289  Sum_probs=104.9

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv  113 (224)
                      +....+|+..+..|+...........      ...+..++..     ...++.+|||||||+|.++..++.. ..+++|+
T Consensus        14 ~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~-----~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~v   81 (242)
T 3l8d_A           14 ESAEKKWDSSAEFWNQNSQEMWDSGS------RSTIIPFFEQ-----YVKKEAEVLDVGCGDGYGTYKLSRT-GYKAVGV   81 (242)
T ss_dssp             ------------------CHHHHTST------TTTHHHHHHH-----HSCTTCEEEEETCTTSHHHHHHHHT-TCEEEEE
T ss_pred             HHHHHHHHhHHHHhhhhhhhccCccc------HHHHHHHHHH-----HcCCCCeEEEEcCCCCHHHHHHHHc-CCeEEEE
Confidence            34567888888888753322111100      1122222211     2357889999999999999998865 4589999


Q ss_pred             eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHH
Q 027388          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS  193 (224)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~  193 (224)
                      |+|+.+++.++++..            ..++.++++|+.+++.     +.++||+|++..+++|+    +++..+++++.
T Consensus        82 D~s~~~~~~a~~~~~------------~~~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~  140 (242)
T 3l8d_A           82 DISEVMIQKGKERGE------------GPDLSFIKGDLSSLPF-----ENEQFEAIMAINSLEWT----EEPLRALNEIK  140 (242)
T ss_dssp             ESCHHHHHHHHTTTC------------BTTEEEEECBTTBCSS-----CTTCEEEEEEESCTTSS----SCHHHHHHHHH
T ss_pred             ECCHHHHHHHHhhcc------------cCCceEEEcchhcCCC-----CCCCccEEEEcChHhhc----cCHHHHHHHHH
Confidence            999999999998854            4568999999988775     57899999999999998    56789999999


Q ss_pred             hhccCCeEEEEEeCC------------------------hHHHHHHhhhcccc
Q 027388          194 ALLRPGGTFIGTMPD------------------------ANVIIKKLREEHFC  222 (224)
Q Consensus       194 ~~lk~gG~li~~~~~------------------------~~~~~~~~~~~gf~  222 (224)
                      ++|+|||++++.+++                        ...+...++++||.
T Consensus       141 ~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  193 (242)
T 3l8d_A          141 RVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFK  193 (242)
T ss_dssp             HHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEE
T ss_pred             HHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCE
Confidence            999999999998632                        34677888888874

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.83  E-value=9.8e-20  Score=140.34  Aligned_cols=142  Identities=18%  Similarity=0.145  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCC
Q 027388           37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA  116 (224)
Q Consensus        37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s  116 (224)
                      .++|+..+..|+..........        .........++..+...++.+|||+|||+|.++..++.. ..+++|+|+|
T Consensus         6 ~~~f~~~a~~y~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s   76 (220)
T 3hnr_A            6 NGLFDEWAHTYDSFVQGEDIQY--------KEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPS   76 (220)
T ss_dssp             ------------------CCTT--------TTTTTTHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSC
T ss_pred             HHHHHHHHHHHHHHhhcchHhH--------HHHHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCC
Confidence            3578888888875442111111        111112233444444568889999999999999998765 5699999999


Q ss_pred             hhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhc
Q 027388          117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL  196 (224)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~l  196 (224)
                      +.+++.+++++.             .++.++++|+.+++.     . ++||+|++..+++|+  .......+++++.++|
T Consensus        77 ~~~~~~a~~~~~-------------~~~~~~~~d~~~~~~-----~-~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~L  135 (220)
T 3hnr_A           77 REMRMIAKEKLP-------------KEFSITEGDFLSFEV-----P-TSIDTIVSTYAFHHL--TDDEKNVAIAKYSQLL  135 (220)
T ss_dssp             HHHHHHHHHHSC-------------TTCCEESCCSSSCCC-----C-SCCSEEEEESCGGGS--CHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCC-------------CceEEEeCChhhcCC-----C-CCeEEEEECcchhcC--ChHHHHHHHHHHHHhc
Confidence            999999998854             248899999988765     4 899999999999998  4444556999999999


Q ss_pred             cCCeEEEEEeCC
Q 027388          197 RPGGTFIGTMPD  208 (224)
Q Consensus       197 k~gG~li~~~~~  208 (224)
                      +|||.+++..++
T Consensus       136 kpgG~l~i~~~~  147 (220)
T 3hnr_A          136 NKGGKIVFADTI  147 (220)
T ss_dssp             CTTCEEEEEEEC
T ss_pred             CCCCEEEEEecc
Confidence            999999998543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.83  E-value=1.7e-20  Score=151.56  Aligned_cols=142  Identities=26%  Similarity=0.363  Sum_probs=102.1

Q ss_pred             hhhHHHHHHHHHHHhh-------cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccccc
Q 027388           67 KKLNNWIKSVLVQLYA-------RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK  139 (224)
Q Consensus        67 ~~~~~~~~~~~~~~~~-------~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~  139 (224)
                      +.+..|++..+.....       .++.+|||||||+|..+..++......|+|+|+|+.|++.|+++....        .
T Consensus        24 ~~~nn~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~--------~   95 (302)
T 2vdw_A           24 GILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKL--------N   95 (302)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhc--------c
Confidence            4455566655544322       246899999999998887776666678999999999999999987521        1


Q ss_pred             CC-----CCeeEEeccccccccc-cc--cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHH
Q 027388          140 FS-----FPARLICGDCYEVHLD-KV--LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (224)
Q Consensus       140 ~~-----~~v~~~~~d~~~~~~~-~~--~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~  211 (224)
                      ..     .++.|.+.|+...... ..  ..+.++||+|+|..++||++... +...+++++.++|||||+|++++++...
T Consensus        96 ~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~-~~~~~l~~~~r~LkpGG~~i~~~~~~~~  174 (302)
T 2vdw_A           96 SGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPR-HYATVMNNLSELTASGGKVLITTMDGDK  174 (302)
T ss_dssp             C----CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTT-THHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             ccccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHH-HHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence            11     1256777777321100 00  01357999999999999876544 4679999999999999999999999887


Q ss_pred             HHHHhh
Q 027388          212 IIKKLR  217 (224)
Q Consensus       212 ~~~~~~  217 (224)
                      +...+.
T Consensus       175 ~~~~~~  180 (302)
T 2vdw_A          175 LSKLTD  180 (302)
T ss_dssp             HTTCCS
T ss_pred             HHHHHh
Confidence            776554

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.83  E-value=5.7e-20  Score=144.70  Aligned_cols=105  Identities=21%  Similarity=0.301  Sum_probs=92.5

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||||||+|.++..++.....+++|+|+|+.+++.++++..            ..++.++++|+.+++.     
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~------------~~~~~~~~~d~~~~~~-----  104 (253)
T 3g5l_A           42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT------------SPVVCYEQKAIEDIAI-----  104 (253)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC------------CTTEEEEECCGGGCCC-----
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc------------cCCeEEEEcchhhCCC-----
Confidence            34788999999999999999887665699999999999999999875            4468999999987765     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      +.++||+|++..+++|+    .++..+++++.++|+|||.|++.++
T Consensus       105 ~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          105 EPDAYNVVLSSLALHYI----ASFDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCeEEEEEchhhhhh----hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence            56899999999999998    6688999999999999999999754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.83  E-value=1.2e-19  Score=144.28  Aligned_cols=118  Identities=25%  Similarity=0.398  Sum_probs=98.5

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      ....++..+...++.+|||||||+|.++..++.....+++|+|+|+.+++.+++++.        ..++..++.++++|+
T Consensus        49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~~~~~d~  120 (273)
T 3bus_A           49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARAT--------AAGLANRVTFSYADA  120 (273)
T ss_dssp             HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHH--------HTTCTTTEEEEECCT
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHH--------hcCCCcceEEEECcc
Confidence            344444455556788999999999999999887656799999999999999999876        234455799999999


Q ss_pred             cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      .+++.     +.++||+|++..+++|+    .+...+++++.++|+|||.+++..
T Consensus       121 ~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          121 MDLPF-----EDASFDAVWALESLHHM----PDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             TSCCS-----CTTCEEEEEEESCTTTS----SCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ccCCC-----CCCCccEEEEechhhhC----CCHHHHHHHHHHHcCCCeEEEEEE
Confidence            88765     56899999999999998    556899999999999999999874

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.83  E-value=1.7e-19  Score=138.47  Aligned_cols=115  Identities=14%  Similarity=0.186  Sum_probs=95.2

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ..++......++ +|||+|||+|.++..++.....+++++|+|+.+++.|++++.        ..++..++.++++|+.+
T Consensus        34 ~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~--------~~~~~~~~~~~~~d~~~  104 (219)
T 3dlc_A           34 ENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIA--------DANLNDRIQIVQGDVHN  104 (219)
T ss_dssp             HHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHH--------HTTCTTTEEEEECBTTB
T ss_pred             HHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH--------hccccCceEEEEcCHHH
Confidence            334444433344 999999999999999887655689999999999999999976        23445579999999988


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ++.     +.+.||+|++..+++|+    .++..+++++.++|+|||.+++..
T Consensus       105 ~~~-----~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          105 IPI-----EDNYADLIVSRGSVFFW----EDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             CSS-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCC-----CcccccEEEECchHhhc----cCHHHHHHHHHHhCCCCCEEEEEe
Confidence            775     56899999999999998    667899999999999999999874

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.83  E-value=1e-19  Score=147.74  Aligned_cols=156  Identities=40%  Similarity=0.730  Sum_probs=113.1

Q ss_pred             CceehhhhHHHHHHHHHHH-----hh--cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccc
Q 027388           62 PIIHLKKLNNWIKSVLVQL-----YA--RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH  134 (224)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~-----~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~  134 (224)
                      +++.++.+..|++..+...     ..  .++.+|||+|||+|.++..++.....+++++|+|+.+++.|+++........
T Consensus         5 ~i~~lr~~~~~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~   84 (313)
T 3bgv_A            5 RIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRR   84 (313)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSS
T ss_pred             cchhhhhccHHHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcc
Confidence            3445555666655544322     11  2678999999999999999886666799999999999999998865110000


Q ss_pred             cccccCCCCeeEEecccccccccccc-CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHH
Q 027388          135 QRRKKFSFPARLICGDCYEVHLDKVL-ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII  213 (224)
Q Consensus       135 ~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~  213 (224)
                        ......++.++++|+...+..... ...++||+|++..++||++.+.+++..+++++.++|+|||.+++++++.+.+.
T Consensus        85 --~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~  162 (313)
T 3bgv_A           85 --DSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELI  162 (313)
T ss_dssp             --CC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHH
T ss_pred             --cccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHH
Confidence              000123589999999876521111 02358999999999998766778889999999999999999999999998888


Q ss_pred             HHhhhc
Q 027388          214 KKLREE  219 (224)
Q Consensus       214 ~~~~~~  219 (224)
                      ..+...
T Consensus       163 ~~~~~~  168 (313)
T 3bgv_A          163 RRLEAS  168 (313)
T ss_dssp             HHHTTS
T ss_pred             HHHHhh
Confidence            776643

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.83  E-value=2.8e-19  Score=137.37  Aligned_cols=138  Identities=17%  Similarity=0.103  Sum_probs=104.0

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHH-hhcCCCeEEEecCCCchhHHHHHhhcCCeEEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKAKIGYYVG  112 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~g  112 (224)
                      +....+|+..+..|+.......           ..   ....++..+ ...++.+|||||||+|.++..++.. ..+++|
T Consensus         9 ~~~~~~~~~~a~~y~~~~~~~~-----------~~---~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~   73 (218)
T 3ou2_A            9 ESQLSYYRARASEYDATFVPYM-----------DS---AAPAALERLRAGNIRGDVLELASGTGYWTRHLSGL-ADRVTA   73 (218)
T ss_dssp             HHHHHHHHHHGGGHHHHHHHHH-----------TT---THHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-SSEEEE
T ss_pred             HHHHHHHHHHHHHHHHhhhhHH-----------HH---HHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-CCeEEE
Confidence            3455688888887765221111           11   122233333 2456789999999999999998866 559999


Q ss_pred             EeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHH
Q 027388          113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV  192 (224)
Q Consensus       113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~  192 (224)
                      +|+|+.+++.+++..             ..++.++++|+.+. .     ..++||+|++..+++|+  +.+....+++++
T Consensus        74 ~D~s~~~~~~a~~~~-------------~~~~~~~~~d~~~~-~-----~~~~~D~v~~~~~l~~~--~~~~~~~~l~~~  132 (218)
T 3ou2_A           74 LDGSAEMIAEAGRHG-------------LDNVEFRQQDLFDW-T-----PDRQWDAVFFAHWLAHV--PDDRFEAFWESV  132 (218)
T ss_dssp             EESCHHHHHHHGGGC-------------CTTEEEEECCTTSC-C-----CSSCEEEEEEESCGGGS--CHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHhcC-------------CCCeEEEecccccC-C-----CCCceeEEEEechhhcC--CHHHHHHHHHHH
Confidence            999999999998721             13589999999876 3     57899999999999998  555579999999


Q ss_pred             HhhccCCeEEEEEeC
Q 027388          193 SALLRPGGTFIGTMP  207 (224)
Q Consensus       193 ~~~lk~gG~li~~~~  207 (224)
                      .++|+|||.+++..+
T Consensus       133 ~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          133 RSAVAPGGVVEFVDV  147 (218)
T ss_dssp             HHHEEEEEEEEEEEE
T ss_pred             HHHcCCCeEEEEEeC
Confidence            999999999998744

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.83  E-value=5.7e-20  Score=144.84  Aligned_cols=132  Identities=19%  Similarity=0.226  Sum_probs=107.6

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..++..+...++.+|||||||+|.++..++.....+++|+|+|+.+++.+++++.        ..++..++.++++|+.
T Consensus        25 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~--------~~~~~~~v~~~~~d~~   96 (256)
T 1nkv_A           25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAE--------ELGVSERVHFIHNDAA   96 (256)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHH--------HTTCTTTEEEEESCCT
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH--------hcCCCcceEEEECChH
Confidence            44455555567889999999999999999886656689999999999999999876        2344457999999998


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC------------------------
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD------------------------  208 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~------------------------  208 (224)
                      +.+.      .++||+|++..+++|+    .++..+++++.++|||||.+++..+.                        
T Consensus        97 ~~~~------~~~fD~V~~~~~~~~~----~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (256)
T 1nkv_A           97 GYVA------NEKCDVAACVGATWIA----GGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLT  166 (256)
T ss_dssp             TCCC------SSCEEEEEEESCGGGT----SSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCC
T ss_pred             hCCc------CCCCCEEEECCChHhc----CCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCC
Confidence            7653      5789999999999987    46789999999999999999987431                        


Q ss_pred             hHHHHHHhhhcccc
Q 027388          209 ANVIIKKLREEHFC  222 (224)
Q Consensus       209 ~~~~~~~~~~~gf~  222 (224)
                      ...+...++++||.
T Consensus       167 ~~~~~~~l~~aGf~  180 (256)
T 1nkv_A          167 LPGLVGAFDDLGYD  180 (256)
T ss_dssp             HHHHHHHHHTTTBC
T ss_pred             HHHHHHHHHHCCCe
Confidence            25677888888885

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.82  E-value=2e-19  Score=142.80  Aligned_cols=123  Identities=16%  Similarity=0.249  Sum_probs=103.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||||||+|.++..++.....+++|+|+|+.+++.+++++.        ..++..++.++++|+.+++.     
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~~~~-----  110 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNAR--------QSGLQNRVTGIVGSMDDLPF-----  110 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHH--------HTTCTTTEEEEECCTTSCCC-----
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHH--------HcCCCcCcEEEEcChhhCCC-----
Confidence            46788999999999999999987756699999999999999999876        33455679999999988775     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC-----------------------hHHHHHHhhh
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD-----------------------ANVIIKKLRE  218 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~-----------------------~~~~~~~~~~  218 (224)
                      +.++||+|++..+++++     ++..+++++.++|+|||++++..+.                       ...+...+++
T Consensus       111 ~~~~fD~i~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  185 (267)
T 3kkz_A          111 RNEELDLIWSEGAIYNI-----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHK  185 (267)
T ss_dssp             CTTCEEEEEESSCGGGT-----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHH
T ss_pred             CCCCEEEEEEcCCceec-----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence            56899999999999986     3578999999999999999987542                       2356677777


Q ss_pred             cccc
Q 027388          219 EHFC  222 (224)
Q Consensus       219 ~gf~  222 (224)
                      +||.
T Consensus       186 aGf~  189 (267)
T 3kkz_A          186 AGYL  189 (267)
T ss_dssp             TTEE
T ss_pred             CCCE
Confidence            8875

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.82  E-value=3.6e-20  Score=146.32  Aligned_cols=128  Identities=22%  Similarity=0.283  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCC
Q 027388           37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA  116 (224)
Q Consensus        37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s  116 (224)
                      ++.|+..++.|+...-.           .+..+.+++..     ....+.+|||||||+|.++..++.. +.+|+|+|+|
T Consensus         8 ~d~F~~~a~~Y~~~Rp~-----------yp~~l~~~l~~-----~~~~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s   70 (257)
T 4hg2_A            8 KDHFTPVADAYRAFRPR-----------YPRALFRWLGE-----VAPARGDALDCGCGSGQASLGLAEF-FERVHAVDPG   70 (257)
T ss_dssp             ------------CCCCC-----------CCHHHHHHHHH-----HSSCSSEEEEESCTTTTTHHHHHTT-CSEEEEEESC
T ss_pred             HHHHHHHHHHHHHHCCC-----------cHHHHHHHHHH-----hcCCCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCc
Confidence            35678888888742211           11222223222     1245679999999999999988754 5699999999


Q ss_pred             hhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhc
Q 027388          117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL  196 (224)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~l  196 (224)
                      +.|++.|++.               .++.+++++++++++     ++++||+|++..++||+     +...++.++.|+|
T Consensus        71 ~~ml~~a~~~---------------~~v~~~~~~~e~~~~-----~~~sfD~v~~~~~~h~~-----~~~~~~~e~~rvL  125 (257)
T 4hg2_A           71 EAQIRQALRH---------------PRVTYAVAPAEDTGL-----PPASVDVAIAAQAMHWF-----DLDRFWAELRRVA  125 (257)
T ss_dssp             HHHHHTCCCC---------------TTEEEEECCTTCCCC-----CSSCEEEEEECSCCTTC-----CHHHHHHHHHHHE
T ss_pred             HHhhhhhhhc---------------CCceeehhhhhhhcc-----cCCcccEEEEeeehhHh-----hHHHHHHHHHHHc
Confidence            9999877543               249999999998887     67899999999999886     2567999999999


Q ss_pred             cCCeEEEEEe
Q 027388          197 RPGGTFIGTM  206 (224)
Q Consensus       197 k~gG~li~~~  206 (224)
                      ||||+|++..
T Consensus       126 kpgG~l~~~~  135 (257)
T 4hg2_A          126 RPGAVFAAVT  135 (257)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999998764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.81  E-value=3.9e-19  Score=140.55  Aligned_cols=131  Identities=19%  Similarity=0.219  Sum_probs=108.5

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ..++..+...++.+|||||||+|.++..++.....+++|+|+|+.+++.++++...          . .++.++++|+.+
T Consensus        45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----------~-~~~~~~~~d~~~  113 (266)
T 3ujc_A           45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG----------N-NKIIFEANDILT  113 (266)
T ss_dssp             HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS----------C-TTEEEEECCTTT
T ss_pred             HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc----------C-CCeEEEECcccc
Confidence            33444445567889999999999999998875466999999999999999998762          1 569999999988


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC------------------------Ch
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP------------------------DA  209 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~------------------------~~  209 (224)
                      ++.     +.++||+|++..+++|+  +..++..+++++.++|+|||.+++..+                        ..
T Consensus       114 ~~~-----~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (266)
T 3ujc_A          114 KEF-----PENNFDLIYSRDAILAL--SLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITV  186 (266)
T ss_dssp             CCC-----CTTCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCH
T ss_pred             CCC-----CCCcEEEEeHHHHHHhc--ChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCH
Confidence            765     57899999999999998  678999999999999999999998742                        24


Q ss_pred             HHHHHHhhhcccc
Q 027388          210 NVIIKKLREEHFC  222 (224)
Q Consensus       210 ~~~~~~~~~~gf~  222 (224)
                      ..+...++++||.
T Consensus       187 ~~~~~~l~~~Gf~  199 (266)
T 3ujc_A          187 EEYADILTACNFK  199 (266)
T ss_dssp             HHHHHHHHHTTCE
T ss_pred             HHHHHHHHHcCCe
Confidence            5667777777774

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.81  E-value=2.5e-19  Score=144.27  Aligned_cols=119  Identities=19%  Similarity=0.147  Sum_probs=98.7

Q ss_pred             HHHHHHHHH----hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEE
Q 027388           72 WIKSVLVQL----YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI  147 (224)
Q Consensus        72 ~~~~~~~~~----~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~  147 (224)
                      ....++..+    ...++.+|||||||+|.++..++.....+++|+|+|+.+++.++++..        ..++..++.++
T Consensus        66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~~~  137 (297)
T 2o57_A           66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNN--------QAGLADNITVK  137 (297)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH--------HHTCTTTEEEE
T ss_pred             HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH--------hcCCCcceEEE
Confidence            344444455    456788999999999999999886645699999999999999999875        23445679999


Q ss_pred             eccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       148 ~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ++|+.+++.     +.++||+|++..+++|+    .++..+++++.++|||||+|++..+
T Consensus       138 ~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          138 YGSFLEIPC-----EDNSYDFIWSQDAFLHS----PDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             ECCTTSCSS-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EcCcccCCC-----CCCCEeEEEecchhhhc----CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            999988776     56899999999999998    4578999999999999999998743

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.81  E-value=6.5e-19  Score=137.64  Aligned_cols=144  Identities=22%  Similarity=0.360  Sum_probs=105.7

Q ss_pred             HHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChh
Q 027388           39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG  118 (224)
Q Consensus        39 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~  118 (224)
                      +|+.++..|+.......         .......++...+... ..++.+|||+|||+|.++..++.. ..+++|+|+|+.
T Consensus         2 ~y~~~a~~yd~~~~~~~---------~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~   70 (246)
T 1y8c_A            2 CYNKFAHIYDKLIRADV---------DYKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQE   70 (246)
T ss_dssp             CHHHHHHHHHHHTTCSC---------CHHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHH
T ss_pred             hHHHHHHHHHHHccccc---------cHHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHH
Confidence            57788888875332100         1122223333332221 236789999999999999988765 458999999999


Q ss_pred             HHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcc-ccccccCCHHHHHHHHHHHHhhcc
Q 027388          119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSALLR  197 (224)
Q Consensus       119 ~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~-~l~~~~~~~~~~~~~l~~~~~~lk  197 (224)
                      +++.++++...          ...++.++++|+.+++.     + +.||+|++.. +++|+ ....++..+++++.++|+
T Consensus        71 ~~~~a~~~~~~----------~~~~~~~~~~d~~~~~~-----~-~~fD~v~~~~~~l~~~-~~~~~~~~~l~~~~~~L~  133 (246)
T 1y8c_A           71 MLSEAENKFRS----------QGLKPRLACQDISNLNI-----N-RKFDLITCCLDSTNYI-IDSDDLKKYFKAVSNHLK  133 (246)
T ss_dssp             HHHHHHHHHHH----------TTCCCEEECCCGGGCCC-----S-CCEEEEEECTTGGGGC-CSHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHhh----------cCCCeEEEecccccCCc-----c-CCceEEEEcCcccccc-CCHHHHHHHHHHHHHhcC
Confidence            99999998762          12258999999987764     3 7899999998 99987 344688999999999999


Q ss_pred             CCeEEEEEeCChH
Q 027388          198 PGGTFIGTMPDAN  210 (224)
Q Consensus       198 ~gG~li~~~~~~~  210 (224)
                      |||.+++.+++..
T Consensus       134 pgG~l~~~~~~~~  146 (246)
T 1y8c_A          134 EGGVFIFDINSYY  146 (246)
T ss_dssp             EEEEEEEEEECHH
T ss_pred             CCcEEEEEecCHH
Confidence            9999999765543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.81  E-value=4.7e-19  Score=139.63  Aligned_cols=124  Identities=18%  Similarity=0.231  Sum_probs=103.5

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...++.+|||||||+|.++..++.....+++|+|+|+.+++.+++++.        ..++..++.++++|+.+++.    
T Consensus        43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~~~~~d~~~~~~----  110 (257)
T 3f4k_A           43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAV--------KANCADRVKGITGSMDNLPF----  110 (257)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHH--------HTTCTTTEEEEECCTTSCSS----
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHH--------HcCCCCceEEEECChhhCCC----
Confidence            345678999999999999999987766699999999999999999876        33455569999999988775    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC-----------------------hHHHHHHhh
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD-----------------------ANVIIKKLR  217 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~-----------------------~~~~~~~~~  217 (224)
                       +.++||+|++..+++|+     ++..+++++.++|+|||++++..++                       ...+...++
T Consensus       111 -~~~~fD~v~~~~~l~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  184 (257)
T 3f4k_A          111 -QNEELDLIWSEGAIYNI-----GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKME  184 (257)
T ss_dssp             -CTTCEEEEEEESCSCCC-----CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHH
T ss_pred             -CCCCEEEEEecChHhhc-----CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence             56899999999999986     3678999999999999999997532                       245677778


Q ss_pred             hcccc
Q 027388          218 EEHFC  222 (224)
Q Consensus       218 ~~gf~  222 (224)
                      ++||.
T Consensus       185 ~aGf~  189 (257)
T 3f4k_A          185 RAGYT  189 (257)
T ss_dssp             HTTEE
T ss_pred             HCCCe
Confidence            88874

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.81  E-value=3.6e-19  Score=139.06  Aligned_cols=107  Identities=24%  Similarity=0.360  Sum_probs=91.8

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...++.+|||||||+|.++..++.....+++|+|+|+.+++.++++..            ..++.++++|+.+++.    
T Consensus        40 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~------------~~~~~~~~~d~~~~~~----  103 (243)
T 3bkw_A           40 PEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP------------DTGITYERADLDKLHL----  103 (243)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC------------SSSEEEEECCGGGCCC----
T ss_pred             cccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc------------cCCceEEEcChhhccC----
Confidence            345788999999999999998886654489999999999999998876            2358999999987765    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                       +.++||+|++..+++|+    +++..+++++.++|+|||.+++.+++
T Consensus       104 -~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          104 -PQDSFDLAYSSLALHYV----EDVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             -CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -CCCCceEEEEecccccc----chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence             46899999999999998    56789999999999999999997643

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.81  E-value=4.1e-19  Score=137.09  Aligned_cols=143  Identities=18%  Similarity=0.207  Sum_probs=103.1

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv  113 (224)
                      +....+|+..+..|+........         ..........++..+...++.+|||||||+|.++..++.. ..+++|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~v   80 (227)
T 3e8s_A           11 DALLDSWHQNAQAWIDAVRHGAI---------ESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADR-GIEAVGV   80 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCC---------HHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEE
T ss_pred             HHHHHHHHhhHHHHHHHhccccc---------ccccccccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEE
Confidence            45678899888888753221110         0111112233444445567799999999999999988765 5589999


Q ss_pred             eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHH
Q 027388          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS  193 (224)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~  193 (224)
                      |+|+.+++.++++..               +.+..+|+.++..... ....+||+|++..+++ .    .++..+++++.
T Consensus        81 D~s~~~~~~a~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~fD~v~~~~~l~-~----~~~~~~l~~~~  139 (227)
T 3e8s_A           81 DGDRTLVDAARAAGA---------------GEVHLASYAQLAEAKV-PVGKDYDLICANFALL-H----QDIIELLSAMR  139 (227)
T ss_dssp             ESCHHHHHHHHHTCS---------------SCEEECCHHHHHTTCS-CCCCCEEEEEEESCCC-S----SCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHhcc---------------cccchhhHHhhccccc-ccCCCccEEEECchhh-h----hhHHHHHHHHH
Confidence            999999999998732               6788888776621111 1345699999999998 4    56779999999


Q ss_pred             hhccCCeEEEEEeC
Q 027388          194 ALLRPGGTFIGTMP  207 (224)
Q Consensus       194 ~~lk~gG~li~~~~  207 (224)
                      ++|+|||+|++.++
T Consensus       140 ~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          140 TLLVPGGALVIQTL  153 (227)
T ss_dssp             HTEEEEEEEEEEEC
T ss_pred             HHhCCCeEEEEEec
Confidence            99999999999865

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.81  E-value=4e-19  Score=140.48  Aligned_cols=111  Identities=20%  Similarity=0.313  Sum_probs=92.3

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ++..+...++.+|||||||+|.++..++... .+++|+|+|+.+++.|++++..        .++ .++.++++|+.+++
T Consensus        29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~--------~~~-~~v~~~~~d~~~l~   98 (260)
T 1vl5_A           29 LMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEG--------NGH-QQVEYVQGDAEQMP   98 (260)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHH--------TTC-CSEEEEECCC-CCC
T ss_pred             HHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHh--------cCC-CceEEEEecHHhCC
Confidence            3444455678999999999999999887554 5999999999999999988752        122 25899999998877


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +     ++++||+|++..+++|+    +++..+++++.++|+|||+|++.
T Consensus        99 ~-----~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~~~  139 (260)
T 1vl5_A           99 F-----TDERFHIVTCRIAAHHF----PNPASFVSEAYRVLKKGGQLLLV  139 (260)
T ss_dssp             S-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             C-----CCCCEEEEEEhhhhHhc----CCHHHHHHHHHHHcCCCCEEEEE
Confidence            6     56899999999999998    56789999999999999999986

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.81  E-value=4.6e-19  Score=136.44  Aligned_cols=129  Identities=18%  Similarity=0.160  Sum_probs=107.3

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ++..+...++.+|||+|||+|.++..++...  ..+++++|+|+.+++.+++++..        .++. ++.++++|+.+
T Consensus        29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~-~~~~~~~d~~~   99 (219)
T 3dh0_A           29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK--------LGLK-NVEVLKSEENK   99 (219)
T ss_dssp             HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH--------HTCT-TEEEEECBTTB
T ss_pred             HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH--------cCCC-cEEEEeccccc
Confidence            4444556778899999999999999988654  45899999999999999998752        2222 59999999988


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC---------------ChHHHHHHhhh
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---------------DANVIIKKLRE  218 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~---------------~~~~~~~~~~~  218 (224)
                      ++.     ..+.||+|++..+++|+    .++..+++++.++|+|||.+++...               ....+...+++
T Consensus       100 ~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (219)
T 3dh0_A          100 IPL-----PDNTVDFIFMAFTFHEL----SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILED  170 (219)
T ss_dssp             CSS-----CSSCEEEEEEESCGGGC----SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHH
T ss_pred             CCC-----CCCCeeEEEeehhhhhc----CCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHH
Confidence            765     56889999999999998    5678999999999999999998743               24788899999


Q ss_pred             cccc
Q 027388          219 EHFC  222 (224)
Q Consensus       219 ~gf~  222 (224)
                      +||.
T Consensus       171 ~Gf~  174 (219)
T 3dh0_A          171 AGIR  174 (219)
T ss_dssp             TTCE
T ss_pred             CCCE
Confidence            9985

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.80  E-value=2.5e-18  Score=132.35  Aligned_cols=115  Identities=19%  Similarity=0.193  Sum_probs=92.8

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCC----CeeEEecc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF----PARLICGD  150 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~----~v~~~~~d  150 (224)
                      +...+...++.+|||||||+|.++..++.... .+++|+|+|+.+++.+++++..        .++..    ++.++++|
T Consensus        21 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~~~v~~~~~d   92 (217)
T 3jwh_A           21 VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDR--------LRLPRNQWERLQLIQGA   92 (217)
T ss_dssp             HHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTT--------CCCCHHHHTTEEEEECC
T ss_pred             HHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHH--------hcCCcccCcceEEEeCC
Confidence            33344456788999999999999999886543 6999999999999999998762        22222    69999999


Q ss_pred             ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +...+.     ..++||+|++..+++|+  +.++...+++++.++|+|||++++.
T Consensus        93 ~~~~~~-----~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~li~~  140 (217)
T 3jwh_A           93 LTYQDK-----RFHGYDAATVIEVIEHL--DLSRLGAFERVLFEFAQPKIVIVTT  140 (217)
T ss_dssp             TTSCCG-----GGCSCSEEEEESCGGGC--CHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             cccccc-----cCCCcCEEeeHHHHHcC--CHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            865554     35799999999999998  6667799999999999999966654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.80  E-value=6e-19  Score=139.91  Aligned_cols=152  Identities=16%  Similarity=0.177  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHH---hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccc-----------
Q 027388           69 LNNWIKSVLVQL---YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH-----------  134 (224)
Q Consensus        69 ~~~~~~~~~~~~---~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~-----------  134 (224)
                      ...|....+..+   ...++.+|||||||+|.+...++.....+|+|+|+|+.|++.|++++.......           
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~  116 (263)
T 2a14_A           37 MLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACE  116 (263)
T ss_dssp             HHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHh
Confidence            445554444433   345678999999999988776655555689999999999999998765321000           


Q ss_pred             ---------cccccCCCCee-EEecccccc-ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          135 ---------QRRKKFSFPAR-LICGDCYEV-HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       135 ---------~~~~~~~~~v~-~~~~d~~~~-~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                               +.......++. ++++|+.+. ++...  ..++||+|+++++++|+....++...+++++.++|||||.|+
T Consensus       117 ~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~--~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li  194 (263)
T 2a14_A          117 LEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPA--VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLV  194 (263)
T ss_dssp             HTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTC--CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cCCCCcchhhHHHHHHhhhheEEeccccCCCCCCcc--ccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                     00000011243 889998763 22100  246899999999999875556788999999999999999999


Q ss_pred             EEeC------------------ChHHHHHHhhhcccc
Q 027388          204 GTMP------------------DANVIIKKLREEHFC  222 (224)
Q Consensus       204 ~~~~------------------~~~~~~~~~~~~gf~  222 (224)
                      +...                  ....+...+.++||.
T Consensus       195 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~  231 (263)
T 2a14_A          195 TTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFD  231 (263)
T ss_dssp             EEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEE
T ss_pred             EEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCE
Confidence            8741                  345788899999985

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.80  E-value=1.2e-18  Score=137.70  Aligned_cols=137  Identities=16%  Similarity=0.179  Sum_probs=104.5

Q ss_pred             HHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHH-HHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCC
Q 027388           38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLV-QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA  116 (224)
Q Consensus        38 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s  116 (224)
                      ..|+..+..|+......           .......+..+.. .....++.+|||+|||+|.++..++.. ..+++|+|+|
T Consensus         3 ~~~~~~a~~y~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s   70 (263)
T 2yqz_A            3 SALLRAAYAYDRLRAHP-----------PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDAD   70 (263)
T ss_dssp             HHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESC
T ss_pred             CchHHHHHHHhhhcccC-----------hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECC
Confidence            46888888887533211           1122222222222 113467889999999999999998765 5689999999


Q ss_pred             hhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhc
Q 027388          117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL  196 (224)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~l  196 (224)
                      +.+++.+++++.          ....++.+.++|+.+++.     +.++||+|++..+++|+    ++...+++++.++|
T Consensus        71 ~~~~~~a~~~~~----------~~~~~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L  131 (263)
T 2yqz_A           71 AAMLEVFRQKIA----------GVDRKVQVVQADARAIPL-----PDESVHGVIVVHLWHLV----PDWPKVLAEAIRVL  131 (263)
T ss_dssp             HHHHHHHHHHTT----------TSCTTEEEEESCTTSCCS-----CTTCEEEEEEESCGGGC----TTHHHHHHHHHHHE
T ss_pred             HHHHHHHHHHhh----------ccCCceEEEEcccccCCC-----CCCCeeEEEECCchhhc----CCHHHHHHHHHHHC
Confidence            999999999863          123468999999987765     56799999999999998    56889999999999


Q ss_pred             cCCeEEEEE
Q 027388          197 RPGGTFIGT  205 (224)
Q Consensus       197 k~gG~li~~  205 (224)
                      +|||.+++.
T Consensus       132 ~pgG~l~~~  140 (263)
T 2yqz_A          132 KPGGALLEG  140 (263)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCcEEEEE
Confidence            999999886

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.79  E-value=1.8e-18  Score=136.24  Aligned_cols=116  Identities=18%  Similarity=0.149  Sum_probs=88.8

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccc--cccc------cCCCCeeEEecccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH--QRRK------KFSFPARLICGDCYEV  154 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~--~~~~------~~~~~v~~~~~d~~~~  154 (224)
                      .++.+|||+|||+|..+..++..+ .+|+|||+|+.|++.|+++........  ....      ....++.++++|+.++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRG-HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTT-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            477899999999999999988664 489999999999999987653100000  0000      0134699999999887


Q ss_pred             ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +..    ..++||+|++..+++++  +.++...+++++.++|||||+|++.
T Consensus       146 ~~~----~~~~FD~V~~~~~l~~l--~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          146 PRA----NIGKFDRIWDRGALVAI--NPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             GGG----CCCCEEEEEESSSTTTS--CGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             Ccc----cCCCEEEEEEhhhhhhC--CHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            752    13799999999999988  5567889999999999999998643

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.79  E-value=1.2e-18  Score=137.84  Aligned_cols=101  Identities=25%  Similarity=0.417  Sum_probs=87.3

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||||||+|.++..++.. ..+++|+|+|+.+++.|+++..              ++.++++|+.+++.      
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~------  107 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNP--------------DAVLHHGDMRDFSL------  107 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCTTTCCC------
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC--------------CCEEEECChHHCCc------
Confidence            46689999999999999988755 4589999999999999998864              48999999988764      


Q ss_pred             CCCeeEEEEcc-ccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          163 DAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       163 ~~~~D~i~~~~-~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .++||+|++.. +++|+ ....+...+++++.++|+|||+|++.
T Consensus       108 ~~~fD~v~~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          108 GRRFSAVTCMFSSIGHL-AGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             SCCEEEEEECTTGGGGS-CHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             cCCcCEEEEcCchhhhc-CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            57999999998 99987 23357889999999999999999985

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.79  E-value=4.9e-19  Score=147.67  Aligned_cols=129  Identities=22%  Similarity=0.291  Sum_probs=102.3

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCccccccc-c-cCCCCeeEEecccccc---
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR-K-KFSFPARLICGDCYEV---  154 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~-~-~~~~~v~~~~~d~~~~---  154 (224)
                      ..++.+|||||||+|.++..++..  ...+|+|+|+|+.+++.|++++......   . . ....++.++++|+.++   
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~g~~~~~~v~~~~~d~~~l~~~  157 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEK---FFGSPSRSNVRFLKGFIENLATA  157 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHH---HHSSTTCCCEEEEESCTTCGGGC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhh---cccccCCCceEEEEccHHHhhhc
Confidence            457889999999999999988765  3559999999999999999886411000   0 0 0124699999999876   


Q ss_pred             ---ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC------------------------
Q 027388          155 ---HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP------------------------  207 (224)
Q Consensus       155 ---~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~------------------------  207 (224)
                         ++     +.++||+|+++.+++++    +++..+++++.++|||||+|++..+                        
T Consensus       158 ~~~~~-----~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (383)
T 4fsd_A          158 EPEGV-----PDSSVDIVISNCVCNLS----TNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGA  228 (383)
T ss_dssp             BSCCC-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTC
T ss_pred             ccCCC-----CCCCEEEEEEccchhcC----CCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccC
Confidence               43     56899999999999998    5678999999999999999998742                        


Q ss_pred             -ChHHHHHHhhhcccc
Q 027388          208 -DANVIIKKLREEHFC  222 (224)
Q Consensus       208 -~~~~~~~~~~~~gf~  222 (224)
                       ....+.+.++++||.
T Consensus       229 ~~~~~~~~ll~~aGF~  244 (383)
T 4fsd_A          229 LYLEDFRRLVAEAGFR  244 (383)
T ss_dssp             CBHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHCCCc
Confidence             226788888999985

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.79  E-value=3.9e-18  Score=136.97  Aligned_cols=129  Identities=19%  Similarity=0.238  Sum_probs=98.8

Q ss_pred             HHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      .+...++.+|||||||+|.++..++..+. +++|+|+|+.+++.|+++......     .....++.+..+|+.+++.. 
T Consensus        52 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~-  124 (293)
T 3thr_A           52 LLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRK-----EPAFDKWVIEEANWLTLDKD-  124 (293)
T ss_dssp             HHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTT-----SHHHHTCEEEECCGGGHHHH-
T ss_pred             HhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhccc-----ccccceeeEeecChhhCccc-
Confidence            33445788999999999999999886644 999999999999999887531100     00113477889998876510 


Q ss_pred             ccCCCCCeeEEEEc-cccccccC---CHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHH
Q 027388          159 VLADDAPFDICSCQ-FAMHYSWS---TEARARRALANVSALLRPGGTFIGTMPDANVIIKK  215 (224)
Q Consensus       159 ~~~~~~~~D~i~~~-~~l~~~~~---~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~  215 (224)
                      + ...++||+|++. .+++|+.+   ...++..+++++.++|+|||+|++.+++.+.+.+.
T Consensus       125 ~-~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  184 (293)
T 3thr_A          125 V-PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILST  184 (293)
T ss_dssp             S-CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH
T ss_pred             c-ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHhhc
Confidence            0 146899999998 89999832   13568999999999999999999999998877653

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.79  E-value=2.2e-18  Score=139.16  Aligned_cols=119  Identities=16%  Similarity=0.117  Sum_probs=97.7

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..++..+...++.+|||||||+|.++..++.....+++|+|+|+.+++.|++++.        ..++..++.++++|+.
T Consensus        61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~  132 (302)
T 3hem_A           61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFD--------EVDSPRRKEVRIQGWE  132 (302)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHH--------HSCCSSCEEEEECCGG
T ss_pred             HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH--------hcCCCCceEEEECCHH
Confidence            44444555567788999999999999999987644799999999999999999976        2345557999999987


Q ss_pred             ccccccccCCCCCeeEEEEccccccccC-----CHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWS-----TEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~-----~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ++        .++||+|++..+++|+.+     +..+...+++++.++|+|||.+++..+
T Consensus       133 ~~--------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          133 EF--------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             GC--------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             Hc--------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            65        368999999999999844     225678999999999999999998643

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.79  E-value=2.8e-19  Score=136.96  Aligned_cols=103  Identities=20%  Similarity=0.288  Sum_probs=88.8

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ++.+|||+|||+|.++..+   ...+++++|+|+.+++.++++..              ++.++++|+.+++.     +.
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~-----~~   93 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAP--------------EATWVRAWGEALPF-----PG   93 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCT--------------TSEEECCCTTSCCS-----CS
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCC--------------CcEEEEcccccCCC-----CC
Confidence            7889999999999988766   33389999999999999998853              47899999987765     56


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHH
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~  212 (224)
                      ++||+|++..+++|+    +++..+++++.++|+|||.+++.+++....
T Consensus        94 ~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~  138 (211)
T 2gs9_A           94 ESFDVVLLFTTLEFV----EDVERVLLEARRVLRPGGALVVGVLEALSP  138 (211)
T ss_dssp             SCEEEEEEESCTTTC----SCHHHHHHHHHHHEEEEEEEEEEEECTTSH
T ss_pred             CcEEEEEEcChhhhc----CCHHHHHHHHHHHcCCCCEEEEEecCCcCc
Confidence            799999999999998    567899999999999999999998876533

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.79  E-value=3e-18  Score=132.01  Aligned_cols=112  Identities=19%  Similarity=0.206  Sum_probs=91.3

Q ss_pred             HHhhcCCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCC----CeeEEeccccc
Q 027388           79 QLYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF----PARLICGDCYE  153 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~----~v~~~~~d~~~  153 (224)
                      .+...++.+|||||||+|.++..++.... .+++|+|+|+.+++.+++++..        ..+..    ++.++++|+..
T Consensus        24 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~~~v~~~~~d~~~   95 (219)
T 3jwg_A           24 VLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKI--------DRLPEMQRKRISLFQSSLVY   95 (219)
T ss_dssp             HHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTG--------GGSCHHHHTTEEEEECCSSS
T ss_pred             HHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHh--------hccccccCcceEEEeCcccc
Confidence            33446788999999999999999876543 6899999999999999998762        22222    68999999866


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .+.     ..++||+|++..+++|+  +.++...+++++.++|+|||+++..
T Consensus        96 ~~~-----~~~~fD~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~~i~~  140 (219)
T 3jwg_A           96 RDK-----RFSGYDAATVIEVIEHL--DENRLQAFEKVLFEFTRPQTVIVST  140 (219)
T ss_dssp             CCG-----GGTTCSEEEEESCGGGC--CHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             ccc-----ccCCCCEEEEHHHHHhC--CHHHHHHHHHHHHHhhCCCEEEEEc
Confidence            554     45799999999999998  6667789999999999999965543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.79  E-value=1.2e-18  Score=136.14  Aligned_cols=103  Identities=20%  Similarity=0.232  Sum_probs=87.3

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc--ccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~  159 (224)
                      ..++.+|||||||+|.++..++.. ..+++|+|+|+.+++.++++                 +.++++|+.+.  +.   
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~-----------------~~~~~~d~~~~~~~~---   97 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK-----------------FNVVKSDAIEYLKSL---   97 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT-----------------SEEECSCHHHHHHTS---
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh-----------------cceeeccHHHHhhhc---
Confidence            356789999999999999888765 45899999999999999865                 56778887764  33   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                        +.++||+|++..+++|+  +.++...+++++.++|||||++++.+++.
T Consensus        98 --~~~~fD~i~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  143 (240)
T 3dli_A           98 --PDKYLDGVMISHFVEHL--DPERLFELLSLCYSKMKYSSYIVIESPNP  143 (240)
T ss_dssp             --CTTCBSEEEEESCGGGS--CGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred             --CCCCeeEEEECCchhhC--CcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence              46899999999999998  55577999999999999999999987654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.78  E-value=2.9e-18  Score=137.41  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=94.8

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ..++..+...++.+|||||||+|.++..++.....+++|+|+|+.+++.+++++..        .++..++.++++|+.+
T Consensus        54 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~  125 (287)
T 1kpg_A           54 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVAN--------SENLRSKRVLLAGWEQ  125 (287)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHT--------CCCCSCEEEEESCGGG
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh--------cCCCCCeEEEECChhh
Confidence            33444445567889999999999999998855456999999999999999998762        3444578999999864


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ++        ++||+|++..+++|+  +..++..+++++.++|||||.+++..+
T Consensus       126 ~~--------~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          126 FD--------EPVDRIVSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             CC--------CCCSEEEEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CC--------CCeeEEEEeCchhhc--ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            32        689999999999998  446788999999999999999998654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.78  E-value=2e-18  Score=140.15  Aligned_cols=107  Identities=15%  Similarity=0.256  Sum_probs=93.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||||||+|.++..++.....+++|+|+|+.+++.|++++.        ..++..++.++++|+.+++.     
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~~~~-----  181 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAR--------ELRIDDHVRSRVCNMLDTPF-----  181 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH--------HTTCTTTEEEEECCTTSCCC-----
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--------HcCCCCceEEEECChhcCCC-----
Confidence            45678999999999999999886645689999999999999999876        33455679999999988775     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      +.++||+|++..+++|+  .   +..+++++.++|||||++++.+
T Consensus       182 ~~~~fD~V~~~~~l~~~--~---~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          182 DKGAVTASWNNESTMYV--D---LHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             CTTCEEEEEEESCGGGS--C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEeEEEECCchhhC--C---HHHHHHHHHHHcCCCcEEEEEE
Confidence            56899999999999997  2   8899999999999999999875

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.78  E-value=2e-18  Score=138.29  Aligned_cols=108  Identities=20%  Similarity=0.336  Sum_probs=92.7

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+|||||||+|.++..++...  ..+++|+|+|+.+++.+++++..          .+.++.++++|+.+.+.  
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~----------~~~~v~~~~~d~~~~~~--   86 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL----------LPYDSEFLEGDATEIEL--   86 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS----------SSSEEEEEESCTTTCCC--
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh----------cCCceEEEEcchhhcCc--
Confidence            34678899999999999999987652  36899999999999999998762          23369999999987664  


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                          .++||+|++..+++++    ++...+++++.++|+|||++++..++
T Consensus        87 ----~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           87 ----NDKYDIAICHAFLLHM----TTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ----SSCEEEEEEESCGGGC----SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ----CCCeeEEEECChhhcC----CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence                4689999999999998    56789999999999999999998877

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.78  E-value=1.7e-18  Score=134.83  Aligned_cols=122  Identities=19%  Similarity=0.221  Sum_probs=101.5

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ++.+|||||||+|.++..++. ...+++|+|+|+.+++.|++++..        .+...++.++++|+.+.+.      .
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~------~  130 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGS--------SPKAEYFSFVKEDVFTWRP------T  130 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTT--------SGGGGGEEEECCCTTTCCC------S
T ss_pred             CCCCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhc--------cCCCcceEEEECchhcCCC------C
Confidence            446999999999999998864 455899999999999999999762        2234569999999987653      5


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC-------------ChHHHHHHhhhcccc
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP-------------DANVIIKKLREEHFC  222 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~-------------~~~~~~~~~~~~gf~  222 (224)
                      .+||+|++..+++++  +..+...+++++.++|+|||.|++...             ....+...+.++||.
T Consensus       131 ~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  200 (235)
T 3lcc_A          131 ELFDLIFDYVFFCAI--EPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFK  200 (235)
T ss_dssp             SCEEEEEEESSTTTS--CGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEE
T ss_pred             CCeeEEEEChhhhcC--CHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCe
Confidence            699999999999998  556889999999999999999998533             346888899999985

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.78  E-value=1.6e-18  Score=135.31  Aligned_cols=115  Identities=19%  Similarity=0.315  Sum_probs=96.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++..  .+++|+|+|+.+++.|++++..          ...++.++++|+.+.+.      
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~----------~~~~~~~~~~d~~~~~~------   93 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAME----------TNRHVDFWVQDMRELEL------   93 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHH----------TTCCCEEEECCGGGCCC------
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhh----------cCCceEEEEcChhhcCC------
Confidence            56789999999999999988755  7999999999999999998752          12458999999887764      


Q ss_pred             CCCeeEEEEcc-ccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHh
Q 027388          163 DAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL  216 (224)
Q Consensus       163 ~~~~D~i~~~~-~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~  216 (224)
                      .++||+|++.. +++|+ ....+...+++++.++|+|||.+++.+++...+.+.+
T Consensus        94 ~~~fD~v~~~~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~  147 (243)
T 3d2l_A           94 PEPVDAITILCDSLNYL-QTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLF  147 (243)
T ss_dssp             SSCEEEEEECTTGGGGC-CSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTT
T ss_pred             CCCcCEEEEeCCchhhc-CCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhc
Confidence            37899999986 88876 3557889999999999999999999999887665543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.78  E-value=2.6e-18  Score=135.07  Aligned_cols=120  Identities=26%  Similarity=0.451  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec
Q 027388           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (224)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (224)
                      ..++..++......++.+|||+|||+|.++..++.. ..+++|+|+|+.+++.|++++..          ...++.++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~----------~~~~v~~~~~   95 (252)
T 1wzn_A           27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKE----------RNLKIEFLQG   95 (252)
T ss_dssp             HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHH----------TTCCCEEEES
T ss_pred             HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHh----------cCCceEEEEC
Confidence            345555555444456789999999999999998865 45899999999999999998752          1335899999


Q ss_pred             cccccccccccCCCCCeeEEEEcc-ccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          150 DCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~D~i~~~~-~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      |+.+++.      .++||+|++.. .++++  ..++...+++++.++|+|||.+++..++
T Consensus        96 d~~~~~~------~~~fD~v~~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A           96 DVLEIAF------KNEFDAVTMFFSTIMYF--DEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             CGGGCCC------CSCEEEEEECSSGGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             Chhhccc------CCCccEEEEcCCchhcC--CHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            9987664      46899999874 44544  5678899999999999999999998876

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.78  E-value=1.2e-17  Score=132.08  Aligned_cols=143  Identities=17%  Similarity=0.155  Sum_probs=106.8

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv  113 (224)
                      ......++++++.|+.......          .......+..++... ..++.+|||||||+|.++..++.. ..+++|+
T Consensus        15 ~~~~~~~~~~a~~Yd~~~~~~~----------~~~~~~~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gv   82 (260)
T 2avn_A           15 LRSWEFYDRIARAYDSMYETPK----------WKLYHRLIGSFLEEY-LKNPCRVLDLGGGTGKWSLFLQER-GFEVVLV   82 (260)
T ss_dssp             CCHHHHHHHHHHHHGGGGCSHH----------HHHHHHHHHHHHHHH-CCSCCEEEEETCTTCHHHHHHHTT-TCEEEEE
T ss_pred             hhhcchhhHHHHHHHHhccccc----------hhHHHHHHHHHHHHh-cCCCCeEEEeCCCcCHHHHHHHHc-CCeEEEE
Confidence            4456789999999986542110          011222333333333 237789999999999999988765 4589999


Q ss_pred             eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHH
Q 027388          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS  193 (224)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~  193 (224)
                      |+|+.+++.++++..            .   .++++|+.+++.     +.++||+|++..++.|+.   .++..+++++.
T Consensus        83 D~s~~~l~~a~~~~~------------~---~~~~~d~~~~~~-----~~~~fD~v~~~~~~~~~~---~~~~~~l~~~~  139 (260)
T 2avn_A           83 DPSKEMLEVAREKGV------------K---NVVEAKAEDLPF-----PSGAFEAVLALGDVLSYV---ENKDKAFSEIR  139 (260)
T ss_dssp             ESCHHHHHHHHHHTC------------S---CEEECCTTSCCS-----CTTCEEEEEECSSHHHHC---SCHHHHHHHHH
T ss_pred             eCCHHHHHHHHhhcC------------C---CEEECcHHHCCC-----CCCCEEEEEEcchhhhcc---ccHHHHHHHHH
Confidence            999999999998854            1   278889887765     568999999988766552   23789999999


Q ss_pred             hhccCCeEEEEEeCChHH
Q 027388          194 ALLRPGGTFIGTMPDANV  211 (224)
Q Consensus       194 ~~lk~gG~li~~~~~~~~  211 (224)
                      ++|+|||.+++.+++...
T Consensus       140 ~~LkpgG~l~~~~~~~~~  157 (260)
T 2avn_A          140 RVLVPDGLLIATVDNFYT  157 (260)
T ss_dssp             HHEEEEEEEEEEEEBHHH
T ss_pred             HHcCCCeEEEEEeCChHH
Confidence            999999999999988653

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.78  E-value=6.3e-19  Score=139.57  Aligned_cols=129  Identities=15%  Similarity=0.223  Sum_probs=94.3

Q ss_pred             HHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChh
Q 027388           39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG  118 (224)
Q Consensus        39 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~  118 (224)
                      +|+.++..|+.....               ...+...++..+...++.+|||||||+|.++..++. ...+++|+|+|+.
T Consensus         4 ~y~~~a~~y~~~~~~---------------~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~   67 (261)
T 3ege_A            4 IYNSIGKQYSQTRVP---------------DIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIV   67 (261)
T ss_dssp             ---------CCSBCC---------------CHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHH
T ss_pred             HHHHHHHHHhhcccc---------------cHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHH
Confidence            678888888643221               112334444555556789999999999999999886 4569999999999


Q ss_pred             HHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccC
Q 027388          119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP  198 (224)
Q Consensus       119 ~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~  198 (224)
                      +++.++++.               ++.++++|+.+++.     +.++||+|++..+++|+    .++..+++++.++|| 
T Consensus        68 ~~~~a~~~~---------------~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~Lk-  122 (261)
T 3ege_A           68 MRQQAVVHP---------------QVEWFTGYAENLAL-----PDKSVDGVISILAIHHF----SHLEKSFQEMQRIIR-  122 (261)
T ss_dssp             HHHSSCCCT---------------TEEEECCCTTSCCS-----CTTCBSEEEEESCGGGC----SSHHHHHHHHHHHBC-
T ss_pred             HHHHHHhcc---------------CCEEEECchhhCCC-----CCCCEeEEEEcchHhhc----cCHHHHHHHHHHHhC-
Confidence            998876543               49999999988775     56899999999999998    678899999999999 


Q ss_pred             CeEEEEEeCC
Q 027388          199 GGTFIGTMPD  208 (224)
Q Consensus       199 gG~li~~~~~  208 (224)
                      ||++++..++
T Consensus       123 gG~~~~~~~~  132 (261)
T 3ege_A          123 DGTIVLLTFD  132 (261)
T ss_dssp             SSCEEEEEEC
T ss_pred             CcEEEEEEcC
Confidence            9977776443

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.78  E-value=1.1e-17  Score=128.60  Aligned_cols=111  Identities=17%  Similarity=0.180  Sum_probs=93.4

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...++.+|||+|||+|.++..++... .+++|+|+|+.+++.+++++..           ..++.++++|+.+.+     
T Consensus        48 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~~~~~d~~~~~-----  110 (216)
T 3ofk_A           48 SSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKR-----------WSHISWAATDILQFS-----  110 (216)
T ss_dssp             TTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTT-----------CSSEEEEECCTTTCC-----
T ss_pred             ccCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhccc-----------CCCeEEEEcchhhCC-----
Confidence            44567899999999999999987654 5899999999999999999762           226899999998776     


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~  210 (224)
                       ..++||+|++..+++|+ ........++.++.++|+|||++++.++...
T Consensus       111 -~~~~fD~v~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  158 (216)
T 3ofk_A          111 -TAELFDLIVVAEVLYYL-EDMTQMRTAIDNMVKMLAPGGHLVFGSARDA  158 (216)
T ss_dssp             -CSCCEEEEEEESCGGGS-SSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             -CCCCccEEEEccHHHhC-CCHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence             36899999999999998 2345667899999999999999999876654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.77  E-value=8.1e-18  Score=135.05  Aligned_cols=139  Identities=17%  Similarity=0.153  Sum_probs=97.2

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccc--------ccc-cccC------------CC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH--------HQR-RKKF------------SF  142 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~--------~~~-~~~~------------~~  142 (224)
                      ++.+|||||||+|.+...++.....+|+|+|+|+.|++.|++++......        +.. ..+.            ..
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            67899999999998554333334569999999999999999876521000        000 0000            00


Q ss_pred             CeeEEeccccc-cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe---------------
Q 027388          143 PARLICGDCYE-VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM---------------  206 (224)
Q Consensus       143 ~v~~~~~d~~~-~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~---------------  206 (224)
                      .+.++.+|+.+ .++.....+.++||+|+++.+++|+....+++..+++++.++|||||+|++..               
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~  230 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT  230 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeee
Confidence            14567778876 44321111356799999999999953334789999999999999999999851               


Q ss_pred             ---CChHHHHHHhhhcccc
Q 027388          207 ---PDANVIIKKLREEHFC  222 (224)
Q Consensus       207 ---~~~~~~~~~~~~~gf~  222 (224)
                         .....+...|+++||.
T Consensus       231 ~~~~~~~~l~~~l~~aGf~  249 (289)
T 2g72_A          231 VVPVSEEEVREALVRSGYK  249 (289)
T ss_dssp             CCCCCHHHHHHHHHHTTEE
T ss_pred             eccCCHHHHHHHHHHcCCe
Confidence               2457888899999984

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.77  E-value=5.8e-18  Score=132.27  Aligned_cols=112  Identities=22%  Similarity=0.369  Sum_probs=93.9

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      .+..+...++.+|||||||+|.++..++... .+++++|+|+.+++.+++++..        .++ .++.++++|+.+++
T Consensus        13 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~--------~~~-~~v~~~~~d~~~~~   82 (239)
T 1xxl_A           13 MIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQE--------KGV-ENVRFQQGTAESLP   82 (239)
T ss_dssp             HHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHH--------HTC-CSEEEEECBTTBCC
T ss_pred             HHHHhCcCCCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHH--------cCC-CCeEEEecccccCC
Confidence            4455566788999999999999999887554 5999999999999999988752        122 25899999998876


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      .     ..++||+|++..+++|+    .++..++.++.++|+|||++++..
T Consensus        83 ~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           83 F-----PDDSFDIITCRYAAHHF----SDVRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             S-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             C-----CCCcEEEEEECCchhhc----cCHHHHHHHHHHHcCCCcEEEEEE
Confidence            5     56899999999999998    567899999999999999999863

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.77  E-value=9.9e-19  Score=136.39  Aligned_cols=126  Identities=19%  Similarity=0.162  Sum_probs=95.9

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc--ccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~  159 (224)
                      ..++.+|||||||+|.++..++.....+++|+|+|+.|++.|+++...          ...++.++++|+.++  ++   
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~----------~~~~v~~~~~d~~~~~~~~---  124 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR----------QTHKVIPLKGLWEDVAPTL---  124 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGG----------CSSEEEEEESCHHHHGGGS---
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHh----------cCCCeEEEecCHHHhhccc---
Confidence            457789999999999999988755556899999999999999998762          134689999999876  44   


Q ss_pred             cCCCCCeeEEEE-ccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh-----------------HHHHHHhhhccc
Q 027388          160 LADDAPFDICSC-QFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA-----------------NVIIKKLREEHF  221 (224)
Q Consensus       160 ~~~~~~~D~i~~-~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~-----------------~~~~~~~~~~gf  221 (224)
                        ++++||+|++ .+.+..-.....+...+++++.++|||||+|++.....                 ......+.++||
T Consensus       125 --~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF  202 (236)
T 1zx0_A          125 --PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGF  202 (236)
T ss_dssp             --CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTC
T ss_pred             --CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCC
Confidence              5689999999 55432111133567788999999999999999753221                 234557788888


Q ss_pred             c
Q 027388          222 C  222 (224)
Q Consensus       222 ~  222 (224)
                      .
T Consensus       203 ~  203 (236)
T 1zx0_A          203 R  203 (236)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.77  E-value=2.7e-18  Score=137.14  Aligned_cols=107  Identities=26%  Similarity=0.438  Sum_probs=91.6

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      +..+...++.+|||||||+|.++..++. ...+++|+|+|+.|++.++++..              ++.+.++|+..++.
T Consensus        50 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~  114 (279)
T 3ccf_A           50 LQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNYP--------------HLHFDVADARNFRV  114 (279)
T ss_dssp             HHHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCT--------------TSCEEECCTTTCCC
T ss_pred             HHHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhCC--------------CCEEEECChhhCCc
Confidence            3344456788999999999999999886 55699999999999999998753              48899999987664


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                            .++||+|++..+++|+    .++..+++++.++|+|||++++.+++
T Consensus       115 ------~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~  156 (279)
T 3ccf_A          115 ------DKPLDAVFSNAMLHWV----KEPEAAIASIHQALKSGGRFVAEFGG  156 (279)
T ss_dssp             ------SSCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ------CCCcCEEEEcchhhhC----cCHHHHHHHHHHhcCCCcEEEEEecC
Confidence                  4789999999999998    56789999999999999999998664

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.77  E-value=9.7e-18  Score=130.07  Aligned_cols=114  Identities=20%  Similarity=0.258  Sum_probs=92.1

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++...+..    .....++.++++|+..++.     
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~-----   97 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLN----QKTGGKAEFKVENASSLSF-----   97 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCC----SSSSCEEEEEECCTTSCCS-----
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCc----cccCcceEEEEecccccCC-----
Confidence            357889999999999999998866 559999999999999999987732111    0112357899999988765     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ..+.||+|++..+++++ ........+++++.++|+|||.+++..
T Consensus        98 ~~~~~D~v~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A           98 HDSSFDFAVMQAFLTSV-PDPKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             CTTCEEEEEEESCGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCceeEEEEcchhhcC-CCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            57899999999999997 234456699999999999999999864

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.77  E-value=5.7e-18  Score=136.98  Aligned_cols=111  Identities=21%  Similarity=0.322  Sum_probs=92.1

Q ss_pred             hhcCCCeEEEecCCCchhHHHHH--hhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWD--KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~--~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+|||||||+|.++..++  .....+++|+|+|+.+++.|++++..        .++..+++++++|+.+++.  
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~--  184 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAG--------HALAGQITLHRQDAWKLDT--  184 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTT--------STTGGGEEEEECCGGGCCC--
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHh--------cCCCCceEEEECchhcCCc--
Confidence            45778999999999999998874  23456899999999999999999872        3445569999999988765  


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                         + ++||+|++..+++|+ ........+++++.++|+|||+|++..
T Consensus       185 ---~-~~fD~v~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          185 ---R-EGYDLLTSNGLNIYE-PDDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             ---C-SCEEEEECCSSGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ---c-CCeEEEEECChhhhc-CCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence               4 899999999999987 234445568999999999999999875

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.77  E-value=2.8e-18  Score=136.64  Aligned_cols=108  Identities=22%  Similarity=0.366  Sum_probs=92.1

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++.+|||||||+|.++..++... ..+++++|+|+.+++.+++++..        .+. .++.++++|+.+++.    
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~-~~~~~~~~d~~~~~~----  101 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK--------NGI-KNVKFLQANIFSLPF----  101 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--------TTC-CSEEEEECCGGGCCS----
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCC-CCcEEEEcccccCCC----
Confidence            4678899999999999999988764 56899999999999999998762        122 358999999988765    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                       +.++||+|++..+++|+    +++..+++++.++|+|||++++..+
T Consensus       102 -~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A          102 -EDSSFDHIFVCFVLEHL----QSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             -CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -CCCCeeEEEEechhhhc----CCHHHHHHHHHHHcCCCcEEEEEEc
Confidence             56899999999999998    5567999999999999999998753

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.76  E-value=3.5e-18  Score=134.70  Aligned_cols=116  Identities=14%  Similarity=0.042  Sum_probs=88.8

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..++..+...++.+|||||||+|.++..++.. ..+|+++|+|+.|++.|++++..            .   ++..++.
T Consensus        34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~------------~---~v~~~~~   97 (261)
T 3iv6_A           34 RENDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALAD------------R---CVTIDLL   97 (261)
T ss_dssp             HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSS------------S---CCEEEEC
T ss_pred             HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHh------------c---cceeeee
Confidence            444555556678899999999999999998865 45999999999999999999762            1   2333333


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      +.+........++||+|+++.+++|+  ..++...++.++.++| |||.++++.+
T Consensus        98 ~~~~~~~~~~~~~fD~Vv~~~~l~~~--~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A           98 DITAEIPKELAGHFDFVLNDRLINRF--TTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             CTTSCCCGGGTTCCSEEEEESCGGGS--CHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             ecccccccccCCCccEEEEhhhhHhC--CHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            33220000024789999999999987  6678899999999999 9999999865

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.76  E-value=6.9e-18  Score=128.84  Aligned_cols=109  Identities=15%  Similarity=0.166  Sum_probs=91.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++.....+++|+|+|+.+++.+++++..          ...++.++++|+.+++.     
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~----------~~~~~~~~~~d~~~~~~-----   85 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRE----------NNFKLNISKGDIRKLPF-----   85 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHH----------HTCCCCEEECCTTSCCS-----
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh----------cCCceEEEECchhhCCC-----
Confidence            456789999999999985555445556999999999999999988651          12458899999988765     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      +.++||+|++..+++|+  +..++..+++++.++|+|||++++..+
T Consensus        86 ~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A           86 KDESMSFVYSYGTIFHM--RKNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             CTTCEEEEEECSCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCceeEEEEcChHHhC--CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            56899999999999987  678899999999999999999998754

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.76  E-value=7.9e-18  Score=136.85  Aligned_cols=116  Identities=12%  Similarity=0.137  Sum_probs=95.2

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ..++..+...++.+|||||||+|.++..++.....+++|+|+|+.+++.+++++..        .++..++.++++|+.+
T Consensus        80 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~  151 (318)
T 2fk8_A           80 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLAS--------IDTNRSRQVLLQGWED  151 (318)
T ss_dssp             HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHT--------SCCSSCEEEEESCGGG
T ss_pred             HHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------cCCCCceEEEECChHH
Confidence            33444444567889999999999999998866455999999999999999998762        3444568999999865


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ++        ++||+|++..+++|+  +.+++..+++++.++|+|||.+++.++
T Consensus       152 ~~--------~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          152 FA--------EPVDRIVSIEAFEHF--GHENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             CC--------CCCSEEEEESCGGGT--CGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CC--------CCcCEEEEeChHHhc--CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            42        689999999999998  556789999999999999999998754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.76  E-value=5.5e-18  Score=133.95  Aligned_cols=139  Identities=13%  Similarity=0.181  Sum_probs=101.2

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccc--------------------cccccCCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH--------------------QRRKKFSF  142 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~  142 (224)
                      .++.+|||||||+|.++..++.....+++|+|+|+.+++.+++++.......                    .....+..
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            4567999999999999988775554589999999999999998876211000                    00000011


Q ss_pred             Ce-eEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC--------------
Q 027388          143 PA-RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP--------------  207 (224)
Q Consensus       143 ~v-~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~--------------  207 (224)
                      ++ .++++|+.+...... ...++||+|++..+++++.....++..+++++.++|+|||+|++...              
T Consensus       135 ~v~~~~~~d~~~~~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~  213 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGG-VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS  213 (265)
T ss_dssp             HEEEEEECCTTSSSTTTT-CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred             hheeEEEeeeccCCCCCc-cccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence            26 889999877542100 02278999999999996544457899999999999999999998642              


Q ss_pred             ----ChHHHHHHhhhcccc
Q 027388          208 ----DANVIIKKLREEHFC  222 (224)
Q Consensus       208 ----~~~~~~~~~~~~gf~  222 (224)
                          ....+...+.++||.
T Consensus       214 ~~~~~~~~~~~~l~~aGf~  232 (265)
T 2i62_A          214 SLPLGWETVRDAVEEAGYT  232 (265)
T ss_dssp             CCCCCHHHHHHHHHHTTCE
T ss_pred             ccccCHHHHHHHHHHCCCE
Confidence                344888999999985

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.76  E-value=2.5e-17  Score=123.98  Aligned_cols=119  Identities=22%  Similarity=0.261  Sum_probs=101.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++.. ..+++++|+|+.+++.++++..              ++.++++|+.+.+.     
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~--------------~~~~~~~d~~~~~~-----  103 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFP--------------EARWVVGDLSVDQI-----  103 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCT--------------TSEEEECCTTTSCC-----
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhCC--------------CCcEEEcccccCCC-----
Confidence            467889999999999999988765 4589999999999999998865              37899999987665     


Q ss_pred             CCCCeeEEEEc-cccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC-----hHHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQ-FAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD-----ANVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~-~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~-----~~~~~~~~~~~gf~  222 (224)
                      +.+.||+|++. .+++++  +.++...++..+.++|+|||.+++..++     ...+...+.+.||.
T Consensus       104 ~~~~~D~i~~~~~~~~~~--~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~  168 (195)
T 3cgg_A          104 SETDFDLIVSAGNVMGFL--AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLE  168 (195)
T ss_dssp             CCCCEEEEEECCCCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEE
T ss_pred             CCCceeEEEECCcHHhhc--ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCE
Confidence            46789999998 678876  6677899999999999999999997654     46888888888874

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.76  E-value=1.4e-17  Score=127.37  Aligned_cols=124  Identities=19%  Similarity=0.224  Sum_probs=100.5

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++.....+++++|+|+.+++.++++...           ..++.++++|+.+++.     
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~-----------~~~i~~~~~d~~~~~~-----  103 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-----------VPQLRWETMDVRKLDF-----  103 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-----------CTTCEEEECCTTSCCS-----
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-----------CCCcEEEEcchhcCCC-----
Confidence            367889999999999999998876555899999999999999998761           2358999999987765     


Q ss_pred             CCCCeeEEEEccccccccC-----------CHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHH-Hhhhccc
Q 027388          162 DDAPFDICSCQFAMHYSWS-----------TEARARRALANVSALLRPGGTFIGTMPDANVIIK-KLREEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~-----------~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~-~~~~~gf  221 (224)
                      +.++||+|++..+++++..           ...+...+++++.++|+|||.+++.+++...... .+...+|
T Consensus       104 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~  175 (215)
T 2pxx_A          104 PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYY  175 (215)
T ss_dssp             CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHHHCCGGG
T ss_pred             CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHHHhcccc
Confidence            4678999999998876631           1457899999999999999999999998765544 4444454

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.75  E-value=1.2e-17  Score=128.79  Aligned_cols=129  Identities=17%  Similarity=0.219  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeC
Q 027388           36 TKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI  115 (224)
Q Consensus        36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~  115 (224)
                      +-.+|+..++.|+.+.....           ..+...+. .+..  ..++.+|||+|||+|.++..++..     +++|+
T Consensus        13 ~~~~~~~~~~~y~~~~~~~~-----------~~~~~~~~-~l~~--~~~~~~vLDiG~G~G~~~~~l~~~-----~~vD~   73 (219)
T 1vlm_A           13 MWHIFERFVNEYERWFLVHR-----------FAYLSELQ-AVKC--LLPEGRGVEIGVGTGRFAVPLKIK-----IGVEP   73 (219)
T ss_dssp             TTHHHHHTHHHHHHHHHHTH-----------HHHHHHHH-HHHH--HCCSSCEEEETCTTSTTHHHHTCC-----EEEES
T ss_pred             heeecchhHHHHHHHHHhcc-----------hhHHHHHH-HHHH--hCCCCcEEEeCCCCCHHHHHHHHH-----hccCC
Confidence            34577777777875443321           11111122 1222  234889999999999999887533     99999


Q ss_pred             ChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhh
Q 027388          116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL  195 (224)
Q Consensus       116 s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~  195 (224)
                      |+.+++.++++ .               +.++++|+.+++.     ..+.||+|++..+++|+    +++..+++++.++
T Consensus        74 s~~~~~~a~~~-~---------------~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~  128 (219)
T 1vlm_A           74 SERMAEIARKR-G---------------VFVLKGTAENLPL-----KDESFDFALMVTTICFV----DDPERALKEAYRI  128 (219)
T ss_dssp             CHHHHHHHHHT-T---------------CEEEECBTTBCCS-----CTTCEEEEEEESCGGGS----SCHHHHHHHHHHH
T ss_pred             CHHHHHHHHhc-C---------------CEEEEcccccCCC-----CCCCeeEEEEcchHhhc----cCHHHHHHHHHHH
Confidence            99999999876 2               7889999887765     46789999999999998    5678999999999


Q ss_pred             ccCCeEEEEEeCC
Q 027388          196 LRPGGTFIGTMPD  208 (224)
Q Consensus       196 lk~gG~li~~~~~  208 (224)
                      |+|||.+++..++
T Consensus       129 L~pgG~l~i~~~~  141 (219)
T 1vlm_A          129 LKKGGYLIVGIVD  141 (219)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             cCCCcEEEEEEeC
Confidence            9999999998554

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.75  E-value=2.9e-18  Score=133.90  Aligned_cols=119  Identities=17%  Similarity=0.131  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe
Q 027388           69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC  148 (224)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~  148 (224)
                      ...+++.+... ...++.+|||||||+|..+..+++....++++||+|+.+++.|+++...          ...+++++.
T Consensus        46 e~~~m~~~a~~-~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~----------~~~~~~~~~  114 (236)
T 3orh_A           46 ETPYMHALAAA-ASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR----------QTHKVIPLK  114 (236)
T ss_dssp             GHHHHHHHHHH-HTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGG----------CSSEEEEEE
T ss_pred             HHHHHHHHHHh-hccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhh----------CCCceEEEe
Confidence            33444444333 3467889999999999999888766667899999999999999998762          244578888


Q ss_pred             ccccccccccccCCCCCeeEEEEc-----cccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          149 GDCYEVHLDKVLADDAPFDICSCQ-----FAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       149 ~d~~~~~~~~~~~~~~~~D~i~~~-----~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +|+......   .+.++||.|+..     ..++|+    .+...+++++.|+|||||+|++.
T Consensus       115 ~~a~~~~~~---~~~~~FD~i~~D~~~~~~~~~~~----~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          115 GLWEDVAPT---LPDGHFDGILYDTYPLSEETWHT----HQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             SCHHHHGGG---SCTTCEEEEEECCCCCBGGGTTT----HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ehHHhhccc---ccccCCceEEEeeeecccchhhh----cchhhhhhhhhheeCCCCEEEEE
Confidence            887654321   146889999753     344444    78999999999999999999875

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.75  E-value=9.1e-18  Score=132.32  Aligned_cols=110  Identities=20%  Similarity=0.254  Sum_probs=92.6

Q ss_pred             HHHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        75 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      .++..+...++.+|||||||+|.++..++... ..+++++|+|+.+++.++++..              ++.++++|+.+
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~--------------~~~~~~~d~~~   89 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP--------------NTNFGKADLAT   89 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHST--------------TSEEEECCTTT
T ss_pred             HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCC--------------CcEEEECChhh
Confidence            34444445677899999999999999887652 5689999999999999998743              48899999887


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ++      ..++||+|++..+++|+    +++..+++++.++|+|||++++.+++
T Consensus        90 ~~------~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A           90 WK------PAQKADLLYANAVFQWV----PDHLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             CC------CSSCEEEEEEESCGGGS----TTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             cC------ccCCcCEEEEeCchhhC----CCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            65      25789999999999998    67889999999999999999998754

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.75  E-value=6.9e-18  Score=132.11  Aligned_cols=112  Identities=12%  Similarity=0.052  Sum_probs=90.8

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||||||+|.++..++.... +++|+|+|+.+++.++++..            ..++.++++|+.+.+......
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~------------~~~~~~~~~d~~~~~~~~~~~  120 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT------------AANISYRLLDGLVPEQAAQIH  120 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC------------CTTEEEEECCTTCHHHHHHHH
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc------------ccCceEEECcccccccccccc
Confidence            46778999999999999999986555 99999999999999999875            336999999998765421110


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ....||+|++..+++|+  +..+...+++++.++|+|||++++....
T Consensus       121 ~~~~~d~v~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          121 SEIGDANIYMRTGFHHI--PVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             HHHCSCEEEEESSSTTS--CGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             cccCccEEEEcchhhcC--CHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            11359999999999998  5557899999999999999998776443

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.74  E-value=2.4e-17  Score=128.34  Aligned_cols=104  Identities=26%  Similarity=0.383  Sum_probs=87.9

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++.... +++|+|+|+.+++.++++..              ++.++++|+.+++.      
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~------   97 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP--------------DATLHQGDMRDFRL------   97 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT--------------TCEEEECCTTTCCC------
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC--------------CCEEEECCHHHccc------
Confidence            5678999999999999998876544 89999999999999998854              48899999987653      


Q ss_pred             CCCeeEEEEcc-ccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          163 DAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       163 ~~~~D~i~~~~-~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      .++||+|+|.. +++|+ ....+...+++++.++|+|||.+++..++
T Consensus        98 ~~~~D~v~~~~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A           98 GRKFSAVVSMFSSVGYL-KTTEELGAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             SSCEEEEEECTTGGGGC-CSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             CCCCcEEEEcCchHhhc-CCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            57899999654 88876 34467899999999999999999998654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.74  E-value=6.4e-18  Score=125.06  Aligned_cols=101  Identities=15%  Similarity=0.237  Sum_probs=86.3

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      +...++.+|||+|||+|.++..++.... +++++|+|+.+++.++++..              ++.+..+|   .+.   
T Consensus        13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~--------------~v~~~~~d---~~~---   71 (170)
T 3i9f_A           13 IFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD--------------SVITLSDP---KEI---   71 (170)
T ss_dssp             HHSSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCT--------------TSEEESSG---GGS---
T ss_pred             cCcCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCC--------------CcEEEeCC---CCC---
Confidence            3456788999999999999999886654 99999999999999998733              48888888   333   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                        +.+.||+|++..+++|+    +++..+++++.++|+|||.+++..+
T Consensus        72 --~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~  113 (170)
T 3i9f_A           72 --PDNSVDFILFANSFHDM----DDKQHVISEVKRILKDDGRVIIIDW  113 (170)
T ss_dssp             --CTTCEEEEEEESCSTTC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --CCCceEEEEEccchhcc----cCHHHHHHHHHHhcCCCCEEEEEEc
Confidence              46799999999999998    5678999999999999999998743

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.74  E-value=3.4e-17  Score=132.03  Aligned_cols=124  Identities=19%  Similarity=0.222  Sum_probs=97.0

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      ...++..+. ..+.+|||||||+|.++..++.. ..+++|+|+|+.+++.|++++...+.      .+..++.++++|+.
T Consensus        72 ~~~~~~~~~-~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~~~v~~~~~d~~  143 (299)
T 3g2m_A           72 AREFATRTG-PVSGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPA------DVRDRCTLVQGDMS  143 (299)
T ss_dssp             HHHHHHHHC-CCCSCEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCH------HHHTTEEEEECBTT
T ss_pred             HHHHHHhhC-CCCCcEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhccc------ccccceEEEeCchh
Confidence            333444432 34459999999999999998865 46899999999999999999762110      01156999999998


Q ss_pred             ccccccccCCCCCeeEEEEc-cccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHH
Q 027388          153 EVHLDKVLADDAPFDICSCQ-FAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~-~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~  212 (224)
                      +++.      .++||+|++. .+++++  +.++...+++++.++|+|||+|++.+++....
T Consensus       144 ~~~~------~~~fD~v~~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  196 (299)
T 3g2m_A          144 AFAL------DKRFGTVVISSGSINEL--DEADRRGLYASVREHLEPGGKFLLSLAMSEAA  196 (299)
T ss_dssp             BCCC------SCCEEEEEECHHHHTTS--CHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred             cCCc------CCCcCEEEECCcccccC--CHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence            8764      5789999865 567665  56678999999999999999999999887765

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.73  E-value=2.8e-17  Score=132.24  Aligned_cols=126  Identities=21%  Similarity=0.274  Sum_probs=92.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCccc----------------------------
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADH----------------------------  133 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~----------------------------  133 (224)
                      .++++|||||||+|.++..++.. ...+++|+|+|+.+++.|++++......                            
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            36789999999999999998876 3569999999999999999987632211                            


Q ss_pred             ---------------------ccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcccccccc--CCHHHHHHHHH
Q 027388          134 ---------------------HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW--STEARARRALA  190 (224)
Q Consensus       134 ---------------------~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~--~~~~~~~~~l~  190 (224)
                                           +........++.|.++|+............+.||+|+|..+++|+.  .+..++..+++
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                 0001112357999999987654111111468999999999997761  02337899999


Q ss_pred             HHHhhccCCeEEEEEeCC
Q 027388          191 NVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       191 ~~~~~lk~gG~li~~~~~  208 (224)
                      ++.++|+|||+|++...+
T Consensus       205 ~~~~~LkpGG~lil~~~~  222 (292)
T 3g07_A          205 RIYRHLRPGGILVLEPQP  222 (292)
T ss_dssp             HHHHHEEEEEEEEEECCC
T ss_pred             HHHHHhCCCcEEEEecCC
Confidence            999999999999997544

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.73  E-value=3.1e-17  Score=132.26  Aligned_cols=111  Identities=14%  Similarity=0.194  Sum_probs=90.2

Q ss_pred             hcCCCeEEEecCCCchhHHHHHh--hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc-
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-  158 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~--~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-  158 (224)
                      ..++.+|||||||+|.++..++.  ....+++|+|+|+.+++.|++++...       .....++.++++|+.+++... 
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~~~~~v~~~~~d~~~~~~~~~  106 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS-------PDTYKNVSFKISSSDDFKFLGA  106 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC-------C-CCTTEEEEECCTTCCGGGCT
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc-------cCCCCceEEEEcCHHhCCcccc
Confidence            45788999999999999999986  35679999999999999999987521       022457999999999877521 


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      .....++||+|++..+++|+     ++..++.++.++|+|||.|++
T Consensus       107 ~~~~~~~fD~V~~~~~l~~~-----~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          107 DSVDKQKIDMITAVECAHWF-----DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             TTTTSSCEEEEEEESCGGGS-----CHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccCCCeeEEeHhhHHHHh-----CHHHHHHHHHHhcCCCcEEEE
Confidence            00012799999999999986     578999999999999999988

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.73  E-value=7.1e-17  Score=124.67  Aligned_cols=111  Identities=26%  Similarity=0.398  Sum_probs=92.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++.... +++++|+|+.+++.+++++...          ..++.++++|+.+++.     +
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~~-----~  100 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR----------ESNVEFIVGDARKLSF-----E  100 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT----------TCCCEEEECCTTSCCS-----C
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhc----------CCCceEEECchhcCCC-----C
Confidence            4578999999999999988876544 9999999999999999987521          2468999999987664     4


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHH
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~  211 (224)
                      .++||+|++..++++.  ...+...+++++.++|+|||.+++..++...
T Consensus       101 ~~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  147 (227)
T 1ve3_A          101 DKTFDYVIFIDSIVHF--EPLELNQVFKEVRRVLKPSGKFIMYFTDLRE  147 (227)
T ss_dssp             TTCEEEEEEESCGGGC--CHHHHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             CCcEEEEEEcCchHhC--CHHHHHHHHHHHHHHcCCCcEEEEEecChHH
Confidence            6799999999985544  4578899999999999999999999887543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.73  E-value=1.3e-16  Score=121.51  Aligned_cols=125  Identities=13%  Similarity=0.019  Sum_probs=100.0

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      ++..+...++.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++..        .++ .++.++++|+.+.
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~-~~v~~~~~d~~~~  102 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKK--------FVA-RNVTLVEAFAPEG  102 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHH--------HTC-TTEEEEECCTTTT
T ss_pred             HHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCC-CcEEEEeCChhhh
Confidence            4444556788999999999999999988764 46899999999999999998762        233 4689999998654


Q ss_pred             ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC---hHHHHHHhhhccc
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD---ANVIIKKLREEHF  221 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---~~~~~~~~~~~gf  221 (224)
                      ..     ....||+|++..+++       +...+++++.++|+|||++++..+.   ...+...+++.||
T Consensus       103 ~~-----~~~~~D~i~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~  160 (204)
T 3e05_A          103 LD-----DLPDPDRVFIGGSGG-------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY  160 (204)
T ss_dssp             CT-----TSCCCSEEEESCCTT-------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             hh-----cCCCCCEEEECCCCc-------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence            32     246899999988764       4568999999999999999998765   3567778888887

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.72  E-value=6.2e-17  Score=128.73  Aligned_cols=118  Identities=14%  Similarity=0.124  Sum_probs=90.7

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc-C-CeEEEEeCChh------HHHHHHHhccCCcccccccccCCCC
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-I-GYYVGIDIAEG------SIEDCRTRYNGDADHHQRRKKFSFP  143 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~-~~~~gvD~s~~------~~~~a~~~~~~~~~~~~~~~~~~~~  143 (224)
                      ....++..+...++.+|||||||+|.++..++... . .+++|+|+|+.      +++.+++++..        .++..+
T Consensus        31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~--------~~~~~~  102 (275)
T 3bkx_A           31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLA--------GPLGDR  102 (275)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHT--------STTGGG
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHh--------cCCCCc
Confidence            34445555566788999999999999999988653 2 69999999997      99999998762        233456


Q ss_pred             eeEEecc-c--cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          144 ARLICGD-C--YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       144 v~~~~~d-~--~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      +.++++| +  ..++.     +.++||+|++..+++|+    .+...+++.+.++++|||.+++..
T Consensus       103 v~~~~~d~~~~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          103 LTVHFNTNLSDDLGPI-----ADQHFDRVVLAHSLWYF----ASANALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             EEEECSCCTTTCCGGG-----TTCCCSEEEEESCGGGS----SCHHHHHHHHHHHTTTCSEEEEEE
T ss_pred             eEEEECChhhhccCCC-----CCCCEEEEEEccchhhC----CCHHHHHHHHHHHhCCCCEEEEEE
Confidence            8999998 3  33333     46899999999999998    334457777777777899999863

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.72  E-value=1.1e-16  Score=120.50  Aligned_cols=111  Identities=17%  Similarity=0.107  Sum_probs=91.2

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++.....+++++|+|+.+++.|++++..        .++ .+++++++|+.+.....   .
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~-~~v~~~~~d~~~~~~~~---~  110 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEA--------LGL-SGATLRRGAVAAVVAAG---T  110 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHH--------HTC-SCEEEEESCHHHHHHHC---C
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH--------cCC-CceEEEEccHHHHHhhc---c
Confidence            57889999999999999987766667899999999999999999762        233 46999999988764210   3


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHh--hccCCeEEEEEeCC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPD  208 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~--~lk~gG~li~~~~~  208 (224)
                      .++||+|+++..+++.   ..+...++..+.+  +|+|||++++.++.
T Consensus       111 ~~~fD~i~~~~p~~~~---~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          111 TSPVDLVLADPPYNVD---SADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             SSCCSEEEECCCTTSC---HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             CCCccEEEECCCCCcc---hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            5789999998886652   4678899999999  99999999998764

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.72  E-value=6.9e-17  Score=129.34  Aligned_cols=105  Identities=16%  Similarity=0.159  Sum_probs=90.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.+++++..        .+  .++.++++|+.+.+.     
T Consensus       118 ~~~~~~vLD~GcG~G~~~~~l~~~g-~~v~~vD~s~~~~~~a~~~~~~--------~~--~~~~~~~~d~~~~~~-----  181 (286)
T 3m70_A          118 IISPCKVLDLGCGQGRNSLYLSLLG-YDVTSWDHNENSIAFLNETKEK--------EN--LNISTALYDINAANI-----  181 (286)
T ss_dssp             HSCSCEEEEESCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHH--------TT--CCEEEEECCGGGCCC-----
T ss_pred             ccCCCcEEEECCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHH--------cC--CceEEEEeccccccc-----
Confidence            3478899999999999999988664 4999999999999999998762        12  268999999987654     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       .++||+|++..+++|+  +.++...+++++.++|+|||.+++.
T Consensus       182 -~~~fD~i~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          182 -QENYDFIVSTVVFMFL--NRERVPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             -CSCEEEEEECSSGGGS--CGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -cCCccEEEEccchhhC--CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence             5789999999999998  6677889999999999999997764

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.72  E-value=7.2e-17  Score=122.09  Aligned_cols=107  Identities=16%  Similarity=0.152  Sum_probs=89.2

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++..        .++ .++.++++|+.+.+.    
T Consensus        29 ~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~--------~~~-~~~~~~~~d~~~~~~----   94 (199)
T 2xvm_A           29 KVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSI--------ENL-DNLHTRVVDLNNLTF----   94 (199)
T ss_dssp             TTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHH--------HTC-TTEEEEECCGGGCCC----
T ss_pred             hccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHh--------CCC-CCcEEEEcchhhCCC----
Confidence            3356789999999999999988865 45999999999999999988752        122 248999999887653    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        .++||+|++..+++|+  +.++...+++++.++|+|||.+++.
T Consensus        95 --~~~~D~v~~~~~l~~~--~~~~~~~~l~~~~~~L~~gG~l~~~  135 (199)
T 2xvm_A           95 --DRQYDFILSTVVLMFL--EAKTIPGLIANMQRCTKPGGYNLIV  135 (199)
T ss_dssp             --CCCEEEEEEESCGGGS--CGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             --CCCceEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence              5789999999999998  5557899999999999999997764

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.71  E-value=2.9e-16  Score=119.81  Aligned_cols=123  Identities=17%  Similarity=0.184  Sum_probs=96.4

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ++..+...++.+|||+|||+|.++..++.. ..+++++|+|+.+++.|++++.        ..++..++.++++|+.+..
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~--------~~g~~~~v~~~~~d~~~~~  117 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNID--------TYGLSPRMRAVQGTAPAAL  117 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHH--------HTTCTTTEEEEESCTTGGG
T ss_pred             HHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHH--------HcCCCCCEEEEeCchhhhc
Confidence            344455677889999999999999998876 6799999999999999999876        2334446999999988732


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH---HHHHHhhhccc
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN---VIIKKLREEHF  221 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~---~~~~~~~~~gf  221 (224)
                      .     ....||+|++...+        +.. ++.++.++|+|||++++.....+   .+.+.+++.||
T Consensus       118 ~-----~~~~~D~v~~~~~~--------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~  172 (204)
T 3njr_A          118 A-----DLPLPEAVFIGGGG--------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGG  172 (204)
T ss_dssp             T-----TSCCCSEEEECSCC--------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCS
T ss_pred             c-----cCCCCCEEEECCcc--------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCC
Confidence            2     24579999987643        234 99999999999999999987654   45556666664

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.71  E-value=7.4e-17  Score=124.57  Aligned_cols=102  Identities=15%  Similarity=0.289  Sum_probs=85.5

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++.. ..+++++|+|+.+++.++++..                .+.++|+.+....   .+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~~----------------~~~~~d~~~~~~~---~~   90 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKLD----------------HVVLGDIETMDMP---YE   90 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTSS----------------EEEESCTTTCCCC---SC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhCC----------------cEEEcchhhcCCC---CC
Confidence            46789999999999999998866 5799999999999999987643                5788888763221   14


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      .+.||+|++..+++|+    .++..++.++.++|+|||.+++.+++
T Consensus        91 ~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A           91 EEQFDCVIFGDVLEHL----FDPWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             TTCEEEEEEESCGGGS----SCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             CCccCEEEECChhhhc----CCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            5789999999999998    45679999999999999999998765

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.71  E-value=1.6e-16  Score=126.59  Aligned_cols=109  Identities=15%  Similarity=0.025  Sum_probs=87.6

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHH-HhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKW-DKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l-~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      .....+.++.+|||||||+|.++..+ ++...++|+|+|+|+.+++.|++++.        ..++ .+++++++|+.+++
T Consensus       115 ~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~--------~~gl-~~v~~v~gDa~~l~  185 (298)
T 3fpf_A          115 AALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIE--------GLGV-DGVNVITGDETVID  185 (298)
T ss_dssp             HHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHH--------HHTC-CSEEEEESCGGGGG
T ss_pred             HHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHH--------hcCC-CCeEEEECchhhCC
Confidence            33446678999999999999776444 43356799999999999999999976        2344 67999999998754


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                             .++||+|++...   .    .+...+++++.++|||||+|++...+
T Consensus       186 -------d~~FDvV~~~a~---~----~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          186 -------GLEFDVLMVAAL---A----EPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             -------GCCCSEEEECTT---C----SCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             -------CCCcCEEEECCC---c----cCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence                   478999998654   2    56789999999999999999997654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.71  E-value=2.2e-16  Score=139.64  Aligned_cols=132  Identities=17%  Similarity=0.213  Sum_probs=102.6

Q ss_pred             hhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcC--CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCee
Q 027388           68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR  145 (224)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~  145 (224)
                      ....++..++..+...++.+|||||||+|.++..++....  .+|+|+|+|+.|++.|++++...  .+.+..+ ..++.
T Consensus       705 L~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~--lnAkr~g-l~nVe  781 (950)
T 3htx_A          705 LSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVK--LNKEACN-VKSAT  781 (950)
T ss_dssp             HHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHH--TTTTCSS-CSEEE
T ss_pred             HHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhc--cchhhcC-CCceE
Confidence            3344555555555556889999999999999999876542  68999999999999999865411  0000112 23699


Q ss_pred             EEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH
Q 027388          146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (224)
Q Consensus       146 ~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~  210 (224)
                      ++++|+.+++.     ..+.||+|++..+++|+  ..+....+++++.++|+|| .+++++||..
T Consensus       782 fiqGDa~dLp~-----~d~sFDlVV~~eVLeHL--~dp~l~~~L~eI~RvLKPG-~LIISTPN~e  838 (950)
T 3htx_A          782 LYDGSILEFDS-----RLHDVDIGTCLEVIEHM--EEDQACEFGEKVLSLFHPK-LLIVSTPNYE  838 (950)
T ss_dssp             EEESCTTSCCT-----TSCSCCEEEEESCGGGS--CHHHHHHHHHHHHHTTCCS-EEEEEECBGG
T ss_pred             EEECchHhCCc-----ccCCeeEEEEeCchhhC--ChHHHHHHHHHHHHHcCCC-EEEEEecCch
Confidence            99999998876     56899999999999998  5566678999999999999 9999999863

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.70  E-value=3e-16  Score=117.95  Aligned_cols=129  Identities=17%  Similarity=0.229  Sum_probs=99.4

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCC-CeeEEeccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDC  151 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~v~~~~~d~  151 (224)
                      ...++..+...++.+|||+|||+|.++..++.. ..+++++|+++.+++.+++++..        .++.. ++.++++|+
T Consensus        41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~--------~~~~~~~~~~~~~d~  111 (194)
T 1dus_A           41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKL--------NNLDNYDIRVVHSDL  111 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHH--------TTCTTSCEEEEECST
T ss_pred             HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHH--------cCCCccceEEEECch
Confidence            333444445557889999999999999998866 67999999999999999998762        12222 389999998


Q ss_pred             cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHH---HHHHhhhc
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV---IIKKLREE  219 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~---~~~~~~~~  219 (224)
                      .+..      ..+.||+|+++.++++   .......+++.+.++|+|||.+++.+++...   +.+.+++.
T Consensus       112 ~~~~------~~~~~D~v~~~~~~~~---~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  173 (194)
T 1dus_A          112 YENV------KDRKYNKIITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV  173 (194)
T ss_dssp             TTTC------TTSCEEEEEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH
T ss_pred             hccc------ccCCceEEEECCCccc---chhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH
Confidence            7632      3578999999888775   2477889999999999999999999887432   44444443

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.70  E-value=2.3e-16  Score=118.25  Aligned_cols=113  Identities=13%  Similarity=0.123  Sum_probs=85.5

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++..        .++ .++++++.+...+...   
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~--------~~~-~~v~~~~~~~~~l~~~---   85 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSD--------LGI-ENTELILDGHENLDHY---   85 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHH--------HTC-CCEEEEESCGGGGGGT---
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHH--------cCC-CcEEEEeCcHHHHHhh---
Confidence            3467889999999999999999866 67999999999999999999762        233 4689988777664321   


Q ss_pred             CCCCCeeEEEEcc-cccc----ccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          161 ADDAPFDICSCQF-AMHY----SWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       161 ~~~~~~D~i~~~~-~l~~----~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                       ..++||+|+++. .+.+    +.........++.++.++|||||.+++...
T Consensus        86 -~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           86 -VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             -CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence             357899998873 2221    001235677889999999999999988754

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.70  E-value=4.6e-17  Score=130.90  Aligned_cols=113  Identities=9%  Similarity=-0.024  Sum_probs=79.5

Q ss_pred             cCCCeEEEecCCCchhHHHHH----hh-cCCe--EEEEeCChhHHHHHHHhccCCcccccccccCCCCee--EEeccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWD----KA-KIGY--YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR--LICGDCYE  153 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~----~~-~~~~--~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~--~~~~d~~~  153 (224)
                      .++.+|||||||+|.++..++    .. ....  ++++|+|+.|++.|++++...        ....++.  +..+++.+
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~--------~~~~~v~~~~~~~~~~~  122 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT--------SNLENVKFAWHKETSSE  122 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC--------SSCTTEEEEEECSCHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc--------cCCCcceEEEEecchhh
Confidence            456799999999997665432    22 2333  499999999999999886521        1112343  44555544


Q ss_pred             ccccc-ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          154 VHLDK-VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       154 ~~~~~-~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ++..- ....+++||+|++..+++|+    +++.++++++.++|||||+|++..+
T Consensus       123 ~~~~~~~~~~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~  173 (292)
T 2aot_A          123 YQSRMLEKKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVV  173 (292)
T ss_dssp             HHHHHHTTTCCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhhhhccccCCCceeEEEEeeeeeec----CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            32000 00135789999999999998    6788999999999999999998643

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.70  E-value=2.8e-16  Score=118.95  Aligned_cols=115  Identities=21%  Similarity=0.311  Sum_probs=90.7

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+|||+|||+|.++..++..  ...+++++|+|+.+++.|++++..        .++..++.++++|+.+++.. 
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~~-   89 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTD--------LNLIDRVTLIKDGHQNMDKY-   89 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHH--------TTCGGGEEEECSCGGGGGGT-
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCCeEEEECCHHHHhhh-
Confidence            4567889999999999999998875  346999999999999999999762        23345699999998776521 


Q ss_pred             ccCCCCCeeEEEEcccc-----ccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          159 VLADDAPFDICSCQFAM-----HYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l-----~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                         ..++||+|+++..+     +.+.....+...+++++.++|+|||++++...
T Consensus        90 ---~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           90 ---IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             ---CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ---ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence               35789999988754     11222445677899999999999999998753

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.70  E-value=3.6e-16  Score=120.01  Aligned_cols=128  Identities=13%  Similarity=0.133  Sum_probs=97.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||||||+|.++..++... ...++|+|+|+.+++.|++++..        .++ .++.++++|+.+++.  . .
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~--------~~~-~~v~~~~~d~~~~~~--~-~  107 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE--------VGV-PNIKLLWVDGSDLTD--Y-F  107 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--------HCC-SSEEEEECCSSCGGG--T-S
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHH--------cCC-CCEEEEeCCHHHHHh--h-c
Confidence            467899999999999999988764 46899999999999999998762        233 469999999987551  0 1


Q ss_pred             CCCCeeEEEEccccccccCCHH----HHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEA----RARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~----~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~gf~  222 (224)
                      +.+.||+|+++....+......    ....++..+.++|+|||.|++.+.+.   ..+.+.+.+.||.
T Consensus       108 ~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~  175 (214)
T 1yzh_A          108 EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMK  175 (214)
T ss_dssp             CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCE
T ss_pred             CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCe
Confidence            4578999999876543200000    13579999999999999999998764   4556777787864

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.70  E-value=2.9e-16  Score=116.73  Aligned_cols=128  Identities=13%  Similarity=0.078  Sum_probs=95.7

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      ...++..+...++.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++..        .++..++ ++++|+
T Consensus        14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~~-~~~~d~   84 (178)
T 3hm2_A           14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAIN--------LGVSDRI-AVQQGA   84 (178)
T ss_dssp             HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHT--------TTCTTSE-EEECCT
T ss_pred             HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHH--------hCCCCCE-EEecch
Confidence            3444555556778899999999999999987653 56899999999999999998762        2344457 888887


Q ss_pred             cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhccc
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEHF  221 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~gf  221 (224)
                      .+ .+..   ..++||+|++..++++        ..+++++.++|+|||.+++.....   ..+...+++.|+
T Consensus        85 ~~-~~~~---~~~~~D~i~~~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~  145 (178)
T 3hm2_A           85 PR-AFDD---VPDNPDVIFIGGGLTA--------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGG  145 (178)
T ss_dssp             TG-GGGG---CCSCCSEEEECC-TTC--------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCC
T ss_pred             Hh-hhhc---cCCCCCEEEECCcccH--------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCC
Confidence            54 2210   2378999999988864        568999999999999999987754   345556665553

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.70  E-value=2.8e-16  Score=119.70  Aligned_cols=118  Identities=17%  Similarity=0.099  Sum_probs=96.1

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++.....+++++|+|+.+++.|++++..        .+... +.++++|+.+..      
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~-v~~~~~d~~~~~------  122 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAAL--------NGIYD-IALQKTSLLADV------  122 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--------TTCCC-CEEEESSTTTTC------
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCc-eEEEeccccccC------
Confidence            457889999999999999998766566999999999999999998762        22233 899999987642      


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~~~~~~gf~  222 (224)
                       .+.||+|+++.++++       ...+++++.++|+|||.+++...   ....+...++++||.
T Consensus       123 -~~~fD~i~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~  178 (205)
T 3grz_A          123 -DGKFDLIVANILAEI-------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQ  178 (205)
T ss_dssp             -CSCEEEEEEESCHHH-------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEE
T ss_pred             -CCCceEEEECCcHHH-------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCc
Confidence             478999999877643       57889999999999999998643   346788888888875

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.69  E-value=3.9e-16  Score=120.96  Aligned_cols=128  Identities=19%  Similarity=0.172  Sum_probs=97.2

Q ss_pred             hhcCCCeEEEecCC-CchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG-~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+|||+||| +|.++..++.....+++|+|+|+.+++.|++++..        .++  ++.++++|+..+..-  
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~--~v~~~~~d~~~~~~~--  119 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIER--------NNS--NVRLVKSNGGIIKGV--  119 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHH--------TTC--CCEEEECSSCSSTTT--
T ss_pred             hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH--------hCC--CcEEEeCCchhhhhc--
Confidence            45678999999999 99999988866467999999999999999998762        222  689999997543210  


Q ss_pred             cCCCCCeeEEEEccccccccC---------------CHHHHHHHHHHHHhhccCCeEEEEEeCCh----HHHHHHhhhcc
Q 027388          160 LADDAPFDICSCQFAMHYSWS---------------TEARARRALANVSALLRPGGTFIGTMPDA----NVIIKKLREEH  220 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~---------------~~~~~~~~l~~~~~~lk~gG~li~~~~~~----~~~~~~~~~~g  220 (224)
                        ..+.||+|+++..+++...               .......++..+.++|+|||++++.++..    ..+.+.+.+.|
T Consensus       120 --~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g  197 (230)
T 3evz_A          120 --VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLG  197 (230)
T ss_dssp             --CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             --ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcC
Confidence              3579999999866543210               11235789999999999999999977643    56777888888


Q ss_pred             cc
Q 027388          221 FC  222 (224)
Q Consensus       221 f~  222 (224)
                      |.
T Consensus       198 ~~  199 (230)
T 3evz_A          198 YS  199 (230)
T ss_dssp             CE
T ss_pred             Cc
Confidence            74

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.69  E-value=4.7e-16  Score=116.67  Aligned_cols=124  Identities=22%  Similarity=0.235  Sum_probs=98.1

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      +......++.+|||+|||+|.++..++... .+++++|+|+.+++.+++++..        .+...++.+.++|+.+ ..
T Consensus        26 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~-~~   95 (192)
T 1l3i_A           26 MCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQR--------HGLGDNVTLMEGDAPE-AL   95 (192)
T ss_dssp             HHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHH--------TTCCTTEEEEESCHHH-HH
T ss_pred             HHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHH--------cCCCcceEEEecCHHH-hc
Confidence            334456778899999999999999887655 7999999999999999998762        2333468999999866 22


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhccc
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEHF  221 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~gf  221 (224)
                      .    ..+.||+|++..++++       ...+++.+.++|+|||.+++..++.   ..+.+.+++.||
T Consensus        96 ~----~~~~~D~v~~~~~~~~-------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~  152 (192)
T 1l3i_A           96 C----KIPDIDIAVVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF  152 (192)
T ss_dssp             T----TSCCEEEEEESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             c----cCCCCCEEEECCchHH-------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCC
Confidence            1    1258999999887654       4688999999999999999988764   456677888887

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.69  E-value=3.7e-16  Score=123.50  Aligned_cols=130  Identities=16%  Similarity=0.150  Sum_probs=99.6

Q ss_pred             hc-CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 AR-RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~-~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      .. ++.+|||+|||+|.++..++......++|+|+++.+++.|++++.        ..++..++.++++|+.+....   
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~--------~~~~~~~v~~~~~D~~~~~~~---  114 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVA--------YNQLEDQIEIIEYDLKKITDL---  114 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHH--------HTTCTTTEEEECSCGGGGGGT---
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH--------HCCCcccEEEEECcHHHhhhh---
Confidence            44 688999999999999999887665699999999999999999987        345556799999999876521   


Q ss_pred             CCCCCeeEEEEccccccc----c------------CCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhhcccc
Q 027388          161 ADDAPFDICSCQFAMHYS----W------------STEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREEHFC  222 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~----~------------~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~~gf~  222 (224)
                      ...++||+|+++..+...    .            ....+...++..+.++|+|||++++..+.  ...+...+++.||.
T Consensus       115 ~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~  194 (259)
T 3lpm_A          115 IPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLE  194 (259)
T ss_dssp             SCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEE
T ss_pred             hccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCc
Confidence            136899999997544221    0            01135678999999999999999987653  46777788877764

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.69  E-value=5.7e-17  Score=134.78  Aligned_cols=120  Identities=15%  Similarity=0.213  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec
Q 027388           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (224)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (224)
                      ..+...+.......++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|++++.        ..++..+++++++
T Consensus        49 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~--------~~~~~~~v~~~~~  119 (376)
T 3r0q_C           49 DAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVK--------ANNLDHIVEVIEG  119 (376)
T ss_dssp             HHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHH--------HTTCTTTEEEEES
T ss_pred             HHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHH--------HcCCCCeEEEEEC
Confidence            33444444444556789999999999999999887766699999999 99999999876        3455567999999


Q ss_pred             cccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      |+.+++.      .++||+|++..+.+++ .....+..++..+.++|+|||++++.
T Consensus       120 d~~~~~~------~~~~D~Iv~~~~~~~l-~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          120 SVEDISL------PEKVDVIISEWMGYFL-LRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             CGGGCCC------SSCEEEEEECCCBTTB-TTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             chhhcCc------CCcceEEEEcChhhcc-cchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            9988775      3789999997654443 33456788999999999999999864

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.68  E-value=1.1e-15  Score=124.86  Aligned_cols=114  Identities=18%  Similarity=0.153  Sum_probs=92.6

Q ss_pred             HHHHHhh--cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           76 VLVQLYA--RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        76 ~~~~~~~--~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      ++.....  .++.+|||+|||+|.++..++... ..+++++|+| .+++.|++++.        ..++..+++++.+|+.
T Consensus       155 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~--------~~~~~~~v~~~~~d~~  225 (335)
T 2r3s_A          155 IAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENAR--------IQGVASRYHTIAGSAF  225 (335)
T ss_dssp             HHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHH--------HHTCGGGEEEEESCTT
T ss_pred             HHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHH--------hcCCCcceEEEecccc
Confidence            3434443  677899999999999999988653 4589999999 99999999875        2344456999999998


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      +.+.      ...||+|++..+++++  +.++...+++++.++|+|||++++..
T Consensus       226 ~~~~------~~~~D~v~~~~~l~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          226 EVDY------GNDYDLVLLPNFLHHF--DVATCEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             TSCC------CSCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCC------CCCCcEEEEcchhccC--CHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            7654      3459999999999987  66778999999999999999888753

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.68  E-value=3.3e-16  Score=118.96  Aligned_cols=106  Identities=15%  Similarity=0.137  Sum_probs=87.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++ +|||||||+|.++..++.. ..+++++|+|+.+++.+++++..        .  ..++.++++|+.+.+.     +
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~--------~--~~~~~~~~~d~~~~~~-----~   91 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQE--------K--GVKITTVQSNLADFDI-----V   91 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHH--------H--TCCEEEECCBTTTBSC-----C
T ss_pred             CCC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHh--------c--CCceEEEEcChhhcCC-----C
Confidence            455 9999999999999988765 45999999999999999998751        1  2258999999987765     4


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      .+.||+|++..  .|+  ...+...+++++.++|+|||.+++.+++.
T Consensus        92 ~~~fD~v~~~~--~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  134 (202)
T 2kw5_A           92 ADAWEGIVSIF--CHL--PSSLRQQLYPKVYQGLKPGGVFILEGFAP  134 (202)
T ss_dssp             TTTCSEEEEEC--CCC--CHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred             cCCccEEEEEh--hcC--CHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            68999999854  333  56789999999999999999999986543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.68  E-value=1.8e-16  Score=122.76  Aligned_cols=111  Identities=15%  Similarity=0.231  Sum_probs=90.4

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc-cccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~  160 (224)
                      ..++.+|||+|||+|.++..++.. ..+++++|+|+.+++.++++..              ++.++++|+. .++.    
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~~----  106 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARANAP--------------HADVYEWNGKGELPA----  106 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCSCSSCCT----
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhCC--------------CceEEEcchhhccCC----
Confidence            467889999999999999998866 5699999999999999998843              4899999984 4443    


Q ss_pred             CC-CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE--eCChHHHHHHhhhcccc
Q 027388          161 AD-DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT--MPDANVIIKKLREEHFC  222 (224)
Q Consensus       161 ~~-~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~--~~~~~~~~~~~~~~gf~  222 (224)
                       . .++||+|++..          ++..+++++.++|||||.|+..  ..+...+...+.++||.
T Consensus       107 -~~~~~fD~v~~~~----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~  160 (226)
T 3m33_A          107 -GLGAPFGLIVSRR----------GPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWD  160 (226)
T ss_dssp             -TCCCCEEEEEEES----------CCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCE
T ss_pred             -cCCCCEEEEEeCC----------CHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCe
Confidence             4 67999999872          2346788999999999999833  22567889999998875

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.68  E-value=4.7e-16  Score=119.45  Aligned_cols=127  Identities=13%  Similarity=0.159  Sum_probs=94.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||||||+|.++..++... ...++|+|+|+.+++.|++++..        .++ .++.++++|+..++.  . .
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~--------~~~-~nv~~~~~d~~~l~~--~-~  104 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD--------SEA-QNVKLLNIDADTLTD--V-F  104 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH--------SCC-SSEEEECCCGGGHHH--H-C
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHH--------cCC-CCEEEEeCCHHHHHh--h-c
Confidence            467899999999999999988753 46899999999999999998762        222 359999999987541  0 1


Q ss_pred             CCCCeeEEEEccccccccCCH----HHHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTE----ARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~----~~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~gf  221 (224)
                      +.+.||.|++++...|.....    -....++..+.++|+|||.|++.+.+.   ..+.+.+.+.||
T Consensus       105 ~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~  171 (213)
T 2fca_A          105 EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL  171 (213)
T ss_dssp             CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence            467899998765433220000    013678999999999999999998775   355667777776

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.68  E-value=4.2e-16  Score=127.90  Aligned_cols=118  Identities=22%  Similarity=0.226  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      .|...+.......++.+|||||||+|.++..+++.+..+++|+|+|+ +++.|++++.        ..++..+++++++|
T Consensus        51 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~--------~~~~~~~i~~~~~d  121 (340)
T 2fyt_A           51 SYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIR--------LNKLEDTITLIKGK  121 (340)
T ss_dssp             HHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHH--------HTTCTTTEEEEESC
T ss_pred             HHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHH--------HcCCCCcEEEEEee
Confidence            34444555455677899999999999999988876656899999996 9999998876        23445679999999


Q ss_pred             ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                      +.+++.     +.++||+|++..+.+.+ ....++..++..+.++|+|||.++
T Consensus       122 ~~~~~~-----~~~~~D~Ivs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          122 IEEVHL-----PVEKVDVIISEWMGYFL-LFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TTTSCC-----SCSCEEEEEECCCBTTB-TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             HHHhcC-----CCCcEEEEEEcCchhhc-cCHHHHHHHHHHHHhhcCCCcEEE
Confidence            988765     45799999987632221 233577889999999999999988

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.68  E-value=2.4e-16  Score=129.79  Aligned_cols=118  Identities=20%  Similarity=0.179  Sum_probs=93.1

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      +...+.......++++|||||||+|.++..+++.+..+|+|+|+| .+++.|++++.        ..++..+++++++|+
T Consensus        54 ~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~--------~~~~~~~v~~~~~d~  124 (349)
T 3q7e_A           54 YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVK--------ANKLDHVVTIIKGKV  124 (349)
T ss_dssp             HHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHH--------HTTCTTTEEEEESCT
T ss_pred             HHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHH--------HcCCCCcEEEEECcH
Confidence            333343334456889999999999999999887766799999999 49999999876        335556699999999


Q ss_pred             cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      .+++.     +.++||+|++..+.+++ .....+..++..+.++|+|||+++.
T Consensus       125 ~~~~~-----~~~~fD~Iis~~~~~~l-~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          125 EEVEL-----PVEKVDIIISEWMGYCL-FYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             TTCCC-----SSSCEEEEEECCCBBTB-TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             HHccC-----CCCceEEEEEccccccc-cCchhHHHHHHHHHHhCCCCCEEcc
Confidence            98876     46899999997654332 2335678899999999999999874

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.67  E-value=2.3e-16  Score=121.06  Aligned_cols=102  Identities=21%  Similarity=0.278  Sum_probs=85.2

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||||||+|.++..++    .+++++|+|+.         .               +.+.++|+.+++.     +
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------~---------------~~~~~~d~~~~~~-----~  112 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------D---------------PRVTVCDMAQVPL-----E  112 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------S---------------TTEEESCTTSCSC-----C
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------C---------------ceEEEeccccCCC-----C
Confidence            567899999999999887662    68999999996         2               6788899887665     5


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC-----ChHHHHHHhhhcccc
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP-----DANVIIKKLREEHFC  222 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~-----~~~~~~~~~~~~gf~  222 (224)
                      .++||+|++..++|+     .++..+++++.++|+|||.+++..+     ....+...++++||.
T Consensus       113 ~~~fD~v~~~~~l~~-----~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~  172 (215)
T 2zfu_A          113 DESVDVAVFCLSLMG-----TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFK  172 (215)
T ss_dssp             TTCEEEEEEESCCCS-----SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEE
T ss_pred             CCCEeEEEEehhccc-----cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCE
Confidence            678999999999963     4678999999999999999999754     447888999999985

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.67  E-value=8e-17  Score=135.61  Aligned_cols=118  Identities=16%  Similarity=0.212  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCe-eEEec
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA-RLICG  149 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v-~~~~~  149 (224)
                      .+...++......++.+|||||||+|.++..++... .+++|+|+|+.+++.|+++..            .... .+...
T Consensus        94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g-~~v~gvD~s~~~~~~a~~~~~------------~~~~~~~~~~  160 (416)
T 4e2x_A           94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAG-VRHLGFEPSSGVAAKAREKGI------------RVRTDFFEKA  160 (416)
T ss_dssp             HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTT-CEEEEECCCHHHHHHHHTTTC------------CEECSCCSHH
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcC-CcEEEECCCHHHHHHHHHcCC------------Ccceeeechh
Confidence            334444444455678899999999999999987654 499999999999999987622            1111 12233


Q ss_pred             cccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH
Q 027388          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~  210 (224)
                      +...++.     ..++||+|++..+++|+    +++..+++++.++|+|||++++.+++..
T Consensus       161 ~~~~l~~-----~~~~fD~I~~~~vl~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~  212 (416)
T 4e2x_A          161 TADDVRR-----TEGPANVIYAANTLCHI----PYVQSVLEGVDALLAPDGVFVFEDPYLG  212 (416)
T ss_dssp             HHHHHHH-----HHCCEEEEEEESCGGGC----TTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             hHhhccc-----CCCCEEEEEECChHHhc----CCHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence            3433433     35899999999999998    5899999999999999999999877643

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.67  E-value=9.6e-16  Score=127.21  Aligned_cols=109  Identities=20%  Similarity=0.229  Sum_probs=89.1

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+|||||||+|.++..++... ..+++++|+ +.+++.+++++.        ..++..+++++.+|+.+ +.   
T Consensus       179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~-~~---  245 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA--------DAGLADRVTVAEGDFFK-PL---  245 (374)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH--------HTTCTTTEEEEECCTTS-CC---
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHH--------hcCCCCceEEEeCCCCC-cC---
Confidence            34567899999999999999988764 458999999 999999999876        23445579999999865 22   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                         +..||+|++..++|++  +..+...+++++.++|+|||+|++...
T Consensus       246 ---~~~~D~v~~~~vl~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          246 ---PVTADVVLLSFVLLNW--SDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             ---SCCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ---CCCCCEEEEeccccCC--CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence               2349999999999987  556667999999999999999887644

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.67  E-value=3.9e-16  Score=118.85  Aligned_cols=110  Identities=15%  Similarity=0.133  Sum_probs=85.8

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-CCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++..        .++. .++.++++|+.+.... .  .
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~v~~~~~d~~~~~~~-~--~  121 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQT--------LKCSSEQAEVINQSSLDFLKQ-P--Q  121 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHH--------TTCCTTTEEEECSCHHHHTTS-C--C
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHH--------hCCCccceEEEECCHHHHHHh-h--c
Confidence            6789999999999999987766667899999999999999998762        2232 4689999998765321 0  2


Q ss_pred             CCC-eeEEEEccccccccCCHHHHHHHHHHH--HhhccCCeEEEEEeCCh
Q 027388          163 DAP-FDICSCQFAMHYSWSTEARARRALANV--SALLRPGGTFIGTMPDA  209 (224)
Q Consensus       163 ~~~-~D~i~~~~~l~~~~~~~~~~~~~l~~~--~~~lk~gG~li~~~~~~  209 (224)
                      .++ ||+|++...++ .    .+...++..+  .++|+|||.+++.+...
T Consensus       122 ~~~~fD~I~~~~~~~-~----~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          122 NQPHFDVVFLDPPFH-F----NLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             SSCCEEEEEECCCSS-S----CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             cCCCCCEEEECCCCC-C----ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            467 99999987744 2    4567788888  67899999999986554

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.67  E-value=3e-16  Score=129.20  Aligned_cols=120  Identities=17%  Similarity=0.210  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec
Q 027388           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (224)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (224)
                      ..+...++..+...++.+|||||||+|.++..+++.+..+|+++|+|+ +++.|++++.        ..++..+++++++
T Consensus        36 ~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~--------~~~l~~~v~~~~~  106 (348)
T 2y1w_A           36 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVK--------SNNLTDRIVVIPG  106 (348)
T ss_dssp             HHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHH--------HTTCTTTEEEEES
T ss_pred             HHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHH--------HcCCCCcEEEEEc
Confidence            345555666566668899999999999999988876667999999996 8899988876        2345567999999


Q ss_pred             cccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      |+.+++.      .++||+|++..+++++  ..+.....+..+.++|+|||.+++..
T Consensus       107 d~~~~~~------~~~~D~Ivs~~~~~~~--~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          107 KVEEVSL------PEQVDIIISEPMGYML--FNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             CTTTCCC------SSCEEEEEECCCBTTB--TTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             chhhCCC------CCceeEEEEeCchhcC--ChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            9988764      3689999999887766  33446677888999999999998653

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.67  E-value=4.1e-16  Score=116.04  Aligned_cols=111  Identities=14%  Similarity=0.043  Sum_probs=87.1

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc-cccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~  160 (224)
                      ..++.+|||+|||+|.++..++.....+++++|+|+.+++.|++++..        .++..++.++++|+.+. +.    
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~~~~~----   96 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIM--------TKAENRFTLLKMEAERAIDC----   96 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHT--------TTCGGGEEEECSCHHHHHHH----
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCceEEEECcHHHhHHh----
Confidence            356789999999999999988876557999999999999999998862        23344689999998763 22    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHH--hhccCCeEEEEEeCChH
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPDAN  210 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~--~~lk~gG~li~~~~~~~  210 (224)
                       ..+.||+|+++..++.     .....++..+.  ++|+|||++++.++...
T Consensus        97 -~~~~fD~i~~~~~~~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           97 -LTGRFDLVFLDPPYAK-----ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             -BCSCEEEEEECCSSHH-----HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             -hcCCCCEEEECCCCCc-----chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence             2467999999876532     44566777776  99999999999876544

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.66  E-value=3e-15  Score=123.90  Aligned_cols=106  Identities=12%  Similarity=0.022  Sum_probs=89.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--cccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKV  159 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~  159 (224)
                      ....+|||||||+|.++..+++.. ..+++++|+ +.+++.|++++..        .++..+++++.+|+.+..  .   
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~~~---  245 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAG--------LSGSERIHGHGANLLDRDVPF---  245 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTT--------CTTGGGEEEEECCCCSSSCCC---
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHh--------cCcccceEEEEccccccCCCC---
Confidence            567899999999999999988653 458999999 9999999998762        344457999999997652  3   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                         +++||+|++..++|++  +.++...+++++++.|+|||+|++.
T Consensus       246 ---p~~~D~v~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~  286 (363)
T 3dp7_A          246 ---PTGFDAVWMSQFLDCF--SEEEVISILTRVAQSIGKDSKVYIM  286 (363)
T ss_dssp             ---CCCCSEEEEESCSTTS--CHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             ---CCCcCEEEEechhhhC--CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence               3689999999999987  6677889999999999999999885

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.66  E-value=1.1e-15  Score=116.77  Aligned_cols=110  Identities=16%  Similarity=0.154  Sum_probs=89.2

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ..++..+...++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++..        .++. +++++++|+.+
T Consensus        67 ~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~--------~~~~-~v~~~~~d~~~  136 (210)
T 3lbf_A           67 ARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKN--------LDLH-NVSTRHGDGWQ  136 (210)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHH--------TTCC-SEEEEESCGGG
T ss_pred             HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHH--------cCCC-ceEEEECCccc
Confidence            33444455678899999999999999988866 67999999999999999998762        2223 58999999877


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ...     ..++||+|++..+++++.          ..+.+.|+|||++++..++
T Consensus       137 ~~~-----~~~~~D~i~~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          137 GWQ-----ARAPFDAIIVTAAPPEIP----------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CCG-----GGCCEEEEEESSBCSSCC----------THHHHTEEEEEEEEEEECS
T ss_pred             CCc-----cCCCccEEEEccchhhhh----------HHHHHhcccCcEEEEEEcC
Confidence            543     357899999999999872          1588999999999998876

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.66  E-value=6.5e-16  Score=119.07  Aligned_cols=115  Identities=20%  Similarity=0.331  Sum_probs=87.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc-cccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~  160 (224)
                      ..+.+|||||||+|.++..++... ...++|||+|+.+++.|++++..        .++ .++.++++|+.++ +.   .
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~--------~~l-~nv~~~~~Da~~~l~~---~  100 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHE--------EGL-SNLRVMCHDAVEVLHK---M  100 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH--------TTC-SSEEEECSCHHHHHHH---H
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHH--------hCC-CcEEEEECCHHHHHHH---H
Confidence            467899999999999999998654 45799999999999999998762        222 2599999998774 20   0


Q ss_pred             CCCCCeeEEEEccccccccCCHHHH------HHHHHHHHhhccCCeEEEEEeCChHH
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARA------RRALANVSALLRPGGTFIGTMPDANV  211 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~------~~~l~~~~~~lk~gG~li~~~~~~~~  211 (224)
                      .+.++||.|++++...|.  .....      ..++..+.++|||||+|++.+.+...
T Consensus       101 ~~~~~~d~v~~~~~~p~~--~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~  155 (218)
T 3dxy_A          101 IPDNSLRMVQLFFPDPWH--KARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPY  155 (218)
T ss_dssp             SCTTCEEEEEEESCCCCC--SGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHH
T ss_pred             cCCCChheEEEeCCCCcc--chhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHH
Confidence            146899999988654432  11111      25999999999999999999987643

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.66  E-value=2.4e-15  Score=119.81  Aligned_cols=126  Identities=14%  Similarity=0.030  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHh-hcCCCeEEEecCCC---chhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCe
Q 027388           70 NNWIKSVLVQLY-ARRGDVVLDLACGK---GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA  144 (224)
Q Consensus        70 ~~~~~~~~~~~~-~~~~~~iLDiGcG~---G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v  144 (224)
                      ..|+.+++..+. .....+|||||||+   |.++..+... ...+|+++|+|+.|++.|++++..           ..++
T Consensus        62 ~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-----------~~~v  130 (274)
T 2qe6_A           62 RKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-----------DPNT  130 (274)
T ss_dssp             HHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-----------CTTE
T ss_pred             hHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-----------CCCe
Confidence            445555555443 23457999999999   9776655443 346899999999999999998751           2468


Q ss_pred             eEEeccccccccc----c--ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          145 RLICGDCYEVHLD----K--VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       145 ~~~~~d~~~~~~~----~--~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      .++++|+.+....    .  ......+||+|++..++||+  +..++..+++++.++|+|||+|++....
T Consensus       131 ~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~--~d~~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          131 AVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYL--SPDVVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             EEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGS--CTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             EEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhC--CcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            9999999764210    0  00123589999999999998  3336899999999999999999988654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.65  E-value=1.1e-15  Score=124.80  Aligned_cols=119  Identities=21%  Similarity=0.252  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      .|...+.......++.+|||||||+|.++..+++.+..+++|+|+| .+++.|++++.        ..++..+++++++|
T Consensus        25 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~--------~~~~~~~i~~~~~d   95 (328)
T 1g6q_1           25 SYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVE--------LNGFSDKITLLRGK   95 (328)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHH--------HTTCTTTEEEEESC
T ss_pred             HHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHH--------HcCCCCCEEEEECc
Confidence            3444454455556889999999999999998887666699999999 59999998876        23555679999999


Q ss_pred             ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      +.+++.     +.++||+|++..+.+++ .....+..++..+.++|+|||.++.
T Consensus        96 ~~~~~~-----~~~~~D~Ivs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1           96 LEDVHL-----PFPKVDIIISEWMGYFL-LYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TTTSCC-----SSSCEEEEEECCCBTTB-STTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hhhccC-----CCCcccEEEEeCchhhc-ccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            988765     45789999998654432 2335577899999999999999973

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.65  E-value=3.7e-15  Score=123.15  Aligned_cols=110  Identities=15%  Similarity=0.036  Sum_probs=90.0

Q ss_pred             HHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           79 QLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      .....++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++++.        ..++..+++++.+|+.+.+. 
T Consensus       185 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~~~~-  254 (359)
T 1x19_A          185 EAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA--------EKGVADRMRGIAVDIYKESY-  254 (359)
T ss_dssp             HCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHH--------HTTCTTTEEEEECCTTTSCC-
T ss_pred             hcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHH--------hcCCCCCEEEEeCccccCCC-
Confidence            3334567899999999999999988754 458999999 999999999876        23445569999999987654 


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                            ..+|+|++..+++++  +.++...+++++.++|+|||+|++..
T Consensus       255 ------~~~D~v~~~~vlh~~--~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          255 ------PEADAVLFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             ------CCCSEEEEESCGGGS--CHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             ------CCCCEEEEechhccC--CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence                  234999999999987  55668999999999999999997653

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.65  E-value=2.1e-15  Score=112.32  Aligned_cols=120  Identities=18%  Similarity=0.295  Sum_probs=94.4

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ++..+...++.+|||+|||+|.++..++. ...+++++|+|+.+++.+++++..        .++ .++.++++|+.+ +
T Consensus        27 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~--------~~~-~~~~~~~~d~~~-~   95 (183)
T 2yxd_A           27 SIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAK--------FNI-KNCQIIKGRAED-V   95 (183)
T ss_dssp             HHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHH--------TTC-CSEEEEESCHHH-H
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHH--------cCC-CcEEEEECCccc-c
Confidence            34444556788999999999999999886 667999999999999999998762        222 358999999876 4


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH---HHHHHhhhccc
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN---VIIKKLREEHF  221 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~---~~~~~~~~~gf  221 (224)
                      .     +.+.||+|++..+ +       +...++..+.++  |||.+++..++..   .+.+.+++.||
T Consensus        96 ~-----~~~~~D~i~~~~~-~-------~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~  149 (183)
T 2yxd_A           96 L-----DKLEFNKAFIGGT-K-------NIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGY  149 (183)
T ss_dssp             G-----GGCCCSEEEECSC-S-------CHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             c-----cCCCCcEEEECCc-c-------cHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCC
Confidence            3     3478999999887 2       246788888888  9999999988754   56667777775

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.65  E-value=2e-15  Score=124.82  Aligned_cols=128  Identities=13%  Similarity=0.095  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeE
Q 027388           69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARL  146 (224)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~  146 (224)
                      ....+..++..+.+.++.+|||||||+|.++..++... ..+++|||+|+.+++.|++....... +.+..++ ..++.+
T Consensus       158 ~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frk-r~~~~Gl~~~rVef  236 (438)
T 3uwp_A          158 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRK-WMKWYGKKHAEYTL  236 (438)
T ss_dssp             HHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHH-HHHHHTBCCCEEEE
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHH-HHHHhCCCCCCeEE
Confidence            34556666777777889999999999999999987653 34699999999999999875420000 0001122 246999


Q ss_pred             EeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       147 ~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +++|+.+.+....   -..||+|+++..++ .    ++....|.++.+.|||||.|++.
T Consensus       237 i~GD~~~lp~~d~---~~~aDVVf~Nn~~F-~----pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          237 ERGDFLSEEWRER---IANTSVIFVNNFAF-G----PEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             EECCTTSHHHHHH---HHTCSEEEECCTTC-C----HHHHHHHHHHHTTSCTTCEEEES
T ss_pred             EECcccCCccccc---cCCccEEEEccccc-C----chHHHHHHHHHHcCCCCcEEEEe
Confidence            9999988775211   14799999987653 2    67888899999999999999975

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.65  E-value=3e-15  Score=123.23  Aligned_cols=115  Identities=17%  Similarity=0.215  Sum_probs=92.4

Q ss_pred             HHHHHhhcC-CCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           76 VLVQLYARR-GDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        76 ~~~~~~~~~-~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ++......+ +.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++++.        ..++..+++++.+|+.+
T Consensus       170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~  240 (352)
T 3mcz_A          170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIH--------AHDLGGRVEFFEKNLLD  240 (352)
T ss_dssp             HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHH--------HTTCGGGEEEEECCTTC
T ss_pred             HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHH--------hcCCCCceEEEeCCccc
Confidence            333334455 7899999999999999988653 458999999 889999998876        23445579999999987


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .+..    ..+.||+|++..++|++  +.++...+++++.+.|+|||+|++.
T Consensus       241 ~~~~----~~~~~D~v~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~  286 (352)
T 3mcz_A          241 ARNF----EGGAADVVMLNDCLHYF--DAREAREVIGHAAGLVKPGGALLIL  286 (352)
T ss_dssp             GGGG----TTCCEEEEEEESCGGGS--CHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             Cccc----CCCCccEEEEecccccC--CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            6510    14579999999999998  6667899999999999999999885

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.64  E-value=5.4e-15  Score=122.61  Aligned_cols=106  Identities=12%  Similarity=0.154  Sum_probs=88.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++++.        ..++..++++..+|+. .+.    
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--------~~~l~~~v~~~~~d~~-~~~----  265 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLT--------GRGLADRCEILPGDFF-ETI----  265 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH--------HTTCTTTEEEEECCTT-TCC----
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhh--------hcCcCCceEEeccCCC-CCC----
Confidence            3567899999999999999988763 458999999 999999999876        2345567999999987 333    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       + ..||+|++..++|++  +.+....+++++.+.|+|||+|++.
T Consensus       266 -p-~~~D~v~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          266 -P-DGADVYLIKHVLHDW--DDDDVVRILRRIATAMKPDSRLLVI  306 (369)
T ss_dssp             -C-SSCSEEEEESCGGGS--CHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             -C-CCceEEEhhhhhccC--CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence             2 389999999999988  6666779999999999999999885

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.64  E-value=4.6e-15  Score=121.25  Aligned_cols=105  Identities=19%  Similarity=0.155  Sum_probs=87.9

Q ss_pred             CCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      +..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++++.        ..++..++++..+|+. .+.     +
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~-~~~-----p  233 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFL--------DTGLSGRAQVVVGSFF-DPL-----P  233 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH--------HTTCTTTEEEEECCTT-SCC-----C
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhh--------hcCcCcCeEEecCCCC-CCC-----C
Confidence            46799999999999999988653 458999999 999999998876        2345567999999987 333     2


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                       .+||+|++..++|++  +.++...+++++++.|+|||+|++..
T Consensus       234 -~~~D~v~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          234 -AGAGGYVLSAVLHDW--DDLSAVAILRRCAEAAGSGGVVLVIE  274 (332)
T ss_dssp             -CSCSEEEEESCGGGS--CHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             -CCCcEEEEehhhccC--CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence             389999999999998  56668999999999999999998864

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.63  E-value=3.5e-15  Score=115.36  Aligned_cols=125  Identities=20%  Similarity=0.141  Sum_probs=94.6

Q ss_pred             HHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           79 QLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      .+.++++.+|||+|||+|.++..++..  ..++|+++|+|+.|++.+++++..           ..++..+.+|......
T Consensus        72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-----------~~ni~~V~~d~~~p~~  140 (233)
T 4df3_A           72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-----------RRNIFPILGDARFPEK  140 (233)
T ss_dssp             CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-----------CTTEEEEESCTTCGGG
T ss_pred             hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-----------hcCeeEEEEeccCccc
Confidence            345789999999999999999999864  457999999999999999988762           2368888888765332


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe---------CC---hHHHHHHhhhcccc
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM---------PD---ANVIIKKLREEHFC  222 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~---------~~---~~~~~~~~~~~gf~  222 (224)
                      .  ....+.+|+|++....+      .+...++.++.+.|||||.+++..         +.   .....+.|+++||.
T Consensus       141 ~--~~~~~~vDvVf~d~~~~------~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~  210 (233)
T 4df3_A          141 Y--RHLVEGVDGLYADVAQP------EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLE  210 (233)
T ss_dssp             G--TTTCCCEEEEEECCCCT------THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCC
T ss_pred             c--ccccceEEEEEEeccCC------hhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCE
Confidence            1  11457899998754322      467789999999999999999862         11   12345667788885

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.63  E-value=4.9e-15  Score=123.08  Aligned_cols=111  Identities=24%  Similarity=0.283  Sum_probs=90.9

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++...          ...++++++|+.+...     .
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~----------~~~v~~~~~D~~~~~~-----~  295 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEAN----------ALKAQALHSDVDEALT-----E  295 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHT----------TCCCEEEECSTTTTSC-----T
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHc----------CCCeEEEEcchhhccc-----c
Confidence            36789999999999999999866 459999999999999999997621          2238899999987654     3


Q ss_pred             CCCeeEEEEcccccccc-CCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          163 DAPFDICSCQFAMHYSW-STEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~-~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      .++||+|+++..+++.. ....+...++.++.++|+|||.+++.....
T Consensus       296 ~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          296 EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            57999999998888621 023778899999999999999999986544

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.63  E-value=3.6e-15  Score=116.46  Aligned_cols=121  Identities=12%  Similarity=0.041  Sum_probs=91.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||||||+|..+..++.. ...+++++|+|+.+++.|++++..        .++. +++++++|+.+++....  
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~-~v~~~~~d~~~~~~~~~--  137 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEA--------LQLE-NTTFCHDRAETFGQRKD--  137 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH--------HTCS-SEEEEESCHHHHTTCTT--
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCC-CEEEEeccHHHhccccc--
Confidence            46789999999999999988753 446899999999999999998762        2333 49999999877653100  


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC--h---HHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD--A---NVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~---~~~~~~~~~~gf~  222 (224)
                      ..++||+|++..+        .++..++..+.++|+|||.+++....  .   ..+...+++.||.
T Consensus       138 ~~~~fD~V~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~  195 (240)
T 1xdz_A          138 VRESYDIVTARAV--------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGE  195 (240)
T ss_dssp             TTTCEEEEEEECC--------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEE
T ss_pred             ccCCccEEEEecc--------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCe
Confidence            1478999998763        34678999999999999999886432  1   2355566677763

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.63  E-value=2.1e-15  Score=114.81  Aligned_cols=108  Identities=10%  Similarity=0.010  Sum_probs=83.6

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++..        .++ .+++++++|+.+....    ..
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~--------~~~-~~v~~~~~D~~~~~~~----~~  120 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLAT--------LKA-GNARVVNSNAMSFLAQ----KG  120 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHH--------TTC-CSEEEECSCHHHHHSS----CC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHH--------cCC-CcEEEEECCHHHHHhh----cC
Confidence            6789999999999999987766666999999999999999998762        222 4689999998763211    35


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHh--hccCCeEEEEEeCCh
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPDA  209 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~--~lk~gG~li~~~~~~  209 (224)
                      +.||+|++...++ .    .....++..+.+  +|+|||++++.+...
T Consensus       121 ~~fD~V~~~~p~~-~----~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          121 TPHNIVFVDPPFR-R----GLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             CCEEEEEECCSSS-T----TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             CCCCEEEECCCCC-C----CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            6899999987743 1    345567777765  599999999986543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.63  E-value=8.7e-16  Score=115.02  Aligned_cols=114  Identities=14%  Similarity=0.095  Sum_probs=85.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++.....+++++|+|+.+++.|++++.        ..++..++.++++|+.+.... ....
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~~~~~~~~d~~~~~~~-~~~~  113 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIA--------ITKEPEKFEVRKMDANRALEQ-FYEE  113 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH--------HHTCGGGEEEEESCHHHHHHH-HHHT
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHH--------HhCCCcceEEEECcHHHHHHH-HHhc
Confidence            4678999999999999998876555799999999999999999876        223344689999998764210 0002


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHH--HhhccCCeEEEEEeCChH
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANV--SALLRPGGTFIGTMPDAN  210 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~--~~~lk~gG~li~~~~~~~  210 (224)
                      .+.||+|+++..++.     ......+..+  .++|+|||++++.++...
T Consensus       114 ~~~fD~i~~~~~~~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          114 KLQFDLVLLDPPYAK-----QEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             TCCEEEEEECCCGGG-----CCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCCCCEEEECCCCCc-----hhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            578999999877542     1234455555  889999999999877654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.63  E-value=5.4e-15  Score=121.96  Aligned_cols=130  Identities=19%  Similarity=0.073  Sum_probs=99.7

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      +......++.+|||+|||+|.++..++...  ...++|+|+++.+++.|++++.        ..++. ++.+.++|+.++
T Consensus       196 ~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~--------~~g~~-~i~~~~~D~~~~  266 (354)
T 3tma_A          196 LRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAAL--------ASGLS-WIRFLRADARHL  266 (354)
T ss_dssp             HHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHH--------HTTCT-TCEEEECCGGGG
T ss_pred             HHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHH--------HcCCC-ceEEEeCChhhC
Confidence            334455678899999999999999988643  4689999999999999999986        33444 699999999987


Q ss_pred             ccccccCCCCCeeEEEEccccccccCC----HHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhccc
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHF  221 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~----~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~gf  221 (224)
                      +.     ....||+|+++..+......    ......++..+.++|+|||.+++.+++...+...+. .||
T Consensus       267 ~~-----~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~~~~-~g~  331 (354)
T 3tma_A          267 PR-----FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKRALP-PGF  331 (354)
T ss_dssp             GG-----TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHHHHCC-TTE
T ss_pred             cc-----ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHhh-cCc
Confidence            65     45678999997655432111    123478899999999999999999999876655554 554

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.63  E-value=2.6e-15  Score=111.27  Aligned_cols=113  Identities=14%  Similarity=0.143  Sum_probs=88.2

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++...  +++|+|+|+.+++.    ..              ++.++++|+.+ +.     .
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----~~--------------~~~~~~~d~~~-~~-----~   75 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----HR--------------GGNLVRADLLC-SI-----N   75 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----CS--------------SSCEEECSTTT-TB-----C
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----cc--------------CCeEEECChhh-hc-----c
Confidence            567899999999999999987555  99999999999987    11              37899999876 33     3


Q ss_pred             CCCeeEEEEccccccccCC-----HHHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHHHhhhcccc
Q 027388          163 DAPFDICSCQFAMHYSWST-----EARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREEHFC  222 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~-----~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~~~~~~gf~  222 (224)
                      .++||+|+++..+++..+.     ..+...++.++.+.+ |||.+++..+   ....+...++++||.
T Consensus        76 ~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~  142 (170)
T 3q87_B           76 QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYG  142 (170)
T ss_dssp             GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCE
T ss_pred             cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCc
Confidence            4799999999887753111     113456788888888 9999998754   457788899999985

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.63  E-value=3.9e-16  Score=119.25  Aligned_cols=138  Identities=14%  Similarity=0.058  Sum_probs=82.5

Q ss_pred             HHHHHHHhh-cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           74 KSVLVQLYA-RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        74 ~~~~~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      ..++..+.. .++.+|||+|||+|.++..++... ..+++|+|+|+.+++.|++++...        +.  +++++++|+
T Consensus        19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~--~~~~~~~d~   88 (215)
T 4dzr_A           19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF--------GA--VVDWAAADG   88 (215)
T ss_dssp             HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------------CCHHHH
T ss_pred             HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh--------CC--ceEEEEcch
Confidence            334444333 678899999999999999988764 448999999999999999987621        22  588889998


Q ss_pred             cccccccccCCCCCeeEEEEcccccccc------C----------------CHHHHHHHHHHHHhhccCCeE-EEEEeC-
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHYSW------S----------------TEARARRALANVSALLRPGGT-FIGTMP-  207 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~------~----------------~~~~~~~~l~~~~~~lk~gG~-li~~~~-  207 (224)
                      .+ .........++||+|+++..++...      .                .......+++++.++|+|||+ +++..+ 
T Consensus        89 ~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  167 (215)
T 4dzr_A           89 IE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH  167 (215)
T ss_dssp             HH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT
T ss_pred             Hh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            76 3311000138999999975443210      0                001127889999999999999 776654 


Q ss_pred             -ChHHHHHHhh--hcccc
Q 027388          208 -DANVIIKKLR--EEHFC  222 (224)
Q Consensus       208 -~~~~~~~~~~--~~gf~  222 (224)
                       ....+...+.  +.||.
T Consensus       168 ~~~~~~~~~l~~~~~gf~  185 (215)
T 4dzr_A          168 NQADEVARLFAPWRERGF  185 (215)
T ss_dssp             SCHHHHHHHTGGGGGGTE
T ss_pred             ccHHHHHHHHHHhhcCCc
Confidence             4577788888  78874

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.63  E-value=3.6e-15  Score=119.03  Aligned_cols=119  Identities=9%  Similarity=0.017  Sum_probs=94.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++.....+++|+|+|+.+++.|++++.        ..++..+++++++|+.+...     
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~--------~n~~~~~v~~~~~D~~~~~~-----  189 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIH--------LNKVEDRMSAYNMDNRDFPG-----  189 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHH--------HTTCTTTEEEECSCTTTCCC-----
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH--------HcCCCceEEEEECCHHHhcc-----
Confidence            45688999999999999999987665579999999999999999876        23455568999999987753     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC---------hHHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD---------ANVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---------~~~~~~~~~~~gf~  222 (224)
                       .+.||+|++.....        ...++..+.++|+|||++++.+..         ...+.+.+.+.||.
T Consensus       190 -~~~fD~Vi~~~p~~--------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~  250 (278)
T 2frn_A          190 -ENIADRILMGYVVR--------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYD  250 (278)
T ss_dssp             -CSCEEEEEECCCSS--------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCE
T ss_pred             -cCCccEEEECCchh--------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCe
Confidence             57899999865422        256888999999999999986443         25667777777763

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.62  E-value=5.3e-15  Score=116.55  Aligned_cols=117  Identities=23%  Similarity=0.263  Sum_probs=93.9

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++++..        .++.  +.+.++|+.+. .     
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~--------~~~~--v~~~~~d~~~~-~-----  180 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKR--------NGVR--PRFLEGSLEAA-L-----  180 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHH--------TTCC--CEEEESCHHHH-G-----
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHH--------cCCc--EEEEECChhhc-C-----
Confidence            46788999999999999998876555 999999999999999998762        2222  78888887653 2     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe---CChHHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM---PDANVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~---~~~~~~~~~~~~~gf~  222 (224)
                      +.++||+|+++...       .....++..+.++|+|||+++++.   .....+...++++||.
T Consensus       181 ~~~~fD~Vv~n~~~-------~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~  237 (254)
T 2nxc_A          181 PFGPFDLLVANLYA-------ELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFR  237 (254)
T ss_dssp             GGCCEEEEEEECCH-------HHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCE
T ss_pred             cCCCCCEEEECCcH-------HHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCE
Confidence            24689999987654       345789999999999999999863   3457888889999985

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.62  E-value=1e-14  Score=116.23  Aligned_cols=125  Identities=10%  Similarity=0.103  Sum_probs=96.5

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++..        .++. ++.++++|+.+..      
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~--------~~~~-~v~~~~~d~~~~~------  172 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH--------LAIK-NIHILQSDWFSAL------  172 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH--------HTCC-SEEEECCSTTGGG------
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCCC-ceEEEEcchhhhc------
Confidence            46789999999999999998854 356899999999999999998762        2222 5899999987632      


Q ss_pred             CCCCeeEEEEccccc-------------cccC--------CHHHHHHHHHHHHhhccCCeEEEEEeC--ChHHHHHHhhh
Q 027388          162 DDAPFDICSCQFAMH-------------YSWS--------TEARARRALANVSALLRPGGTFIGTMP--DANVIIKKLRE  218 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~-------------~~~~--------~~~~~~~~l~~~~~~lk~gG~li~~~~--~~~~~~~~~~~  218 (224)
                      +.++||+|+++....             |-..        .......++..+.+.|+|||++++..+  ....+...+++
T Consensus       173 ~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~  252 (276)
T 2b3t_A          173 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFIL  252 (276)
T ss_dssp             TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHH
T ss_pred             ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHH
Confidence            357899999984322             2100        014568899999999999999999865  44678888999


Q ss_pred             cccc
Q 027388          219 EHFC  222 (224)
Q Consensus       219 ~gf~  222 (224)
                      .||.
T Consensus       253 ~Gf~  256 (276)
T 2b3t_A          253 AGYH  256 (276)
T ss_dssp             TTCT
T ss_pred             CCCc
Confidence            9985

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.62  E-value=2.7e-15  Score=119.14  Aligned_cols=118  Identities=19%  Similarity=0.201  Sum_probs=85.9

Q ss_pred             CCCeEEEecCCCch----hHHHHHhh-c----CCeEEEEeCChhHHHHHHHhccCCccc---------------------
Q 027388           84 RGDVVLDLACGKGG----DLIKWDKA-K----IGYYVGIDIAEGSIEDCRTRYNGDADH---------------------  133 (224)
Q Consensus        84 ~~~~iLDiGcG~G~----~~~~l~~~-~----~~~~~gvD~s~~~~~~a~~~~~~~~~~---------------------  133 (224)
                      ++.+|||+|||||.    +++.+++. .    ..+++|+|+|+.|++.|++........                     
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    44444443 2    248999999999999999875310000                     


Q ss_pred             -ccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          134 -HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       134 -~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                       ......+..++.|.++|+.+.+..    ..+.||+|+|.++++|+  ..+...+++.++.+.|+|||+|++...
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~----~~~~fDlI~crnvliyf--~~~~~~~vl~~~~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYN----VPGPFDAIFCRNVMIYF--DKTTQEDILRRFVPLLKPDGLLFAGHS  253 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCC----CCCCEEEEEECSSGGGS--CHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             ceeechhhcccCeEEecccCCCCCC----cCCCeeEEEECCchHhC--CHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence             000001113689999998874431    14789999999999998  667789999999999999999998643

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.62  E-value=5.5e-15  Score=115.13  Aligned_cols=130  Identities=14%  Similarity=0.109  Sum_probs=89.2

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-cc--ccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VH--LDK  158 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~--~~~  158 (224)
                      .++.+|||||||+|.++..++... ...++|+|+|+.+++.|++++......   ......++.++++|+.+ ++  +  
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~---~~~~~~nv~~~~~d~~~~l~~~~--  119 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAA---PAGGFQNIACLRSNAMKHLPNFF--  119 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHS---TTCCCTTEEEEECCTTTCHHHHC--
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHH---HhcCCCeEEEEECcHHHhhhhhC--
Confidence            466789999999999999988654 458999999999999998775410000   00112469999999976 43  2  


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHH----HHHHHHHHHhhccCCeEEEEEeCChH---HHHHHhhhcc
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEAR----ARRALANVSALLRPGGTFIGTMPDAN---VIIKKLREEH  220 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~----~~~~l~~~~~~lk~gG~li~~~~~~~---~~~~~~~~~g  220 (224)
                         +.++||.|++++.-.|.......    ...+++++.++|+|||.|++.+.+..   .+.+.+.+.+
T Consensus       120 ---~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~  185 (235)
T 3ckk_A          120 ---YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP  185 (235)
T ss_dssp             ---CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTST
T ss_pred             ---CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCC
Confidence               46899999876543322000000    14799999999999999999998754   4444555544

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.62  E-value=7.7e-15  Score=121.18  Aligned_cols=109  Identities=21%  Similarity=0.259  Sum_probs=88.8

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+|||||||+|.++..++... ..+++++|+ +.+++.+++++.        ..++..+++++.+|+.+ +.   
T Consensus       180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~-~~---  246 (360)
T 1tw3_A          180 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLK--------DEGLSDRVDVVEGDFFE-PL---  246 (360)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHH--------HTTCTTTEEEEECCTTS-CC---
T ss_pred             CCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHH--------hcCCCCceEEEeCCCCC-CC---
Confidence            34567899999999999999888654 358999999 999999999876        23445579999999865 22   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                         +..||+|++..++|++  +.++...+++++.++|+|||++++..+
T Consensus       247 ---~~~~D~v~~~~vl~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~  289 (360)
T 1tw3_A          247 ---PRKADAIILSFVLLNW--PDHDAVRILTRCAEALEPGGRILIHER  289 (360)
T ss_dssp             ---SSCEEEEEEESCGGGS--CHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ---CCCccEEEEcccccCC--CHHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence               2359999999999987  556668999999999999999988643

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.62  E-value=7e-16  Score=114.65  Aligned_cols=103  Identities=13%  Similarity=0.069  Sum_probs=82.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++.+|||+|||+|.++..++.. ...+|+++|+|+.|++.+++++..        .+...++.+  +|.....     
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~--------~g~~~~v~~--~d~~~~~-----  111 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGK--------LKTTIKYRF--LNKESDV-----  111 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHH--------SCCSSEEEE--ECCHHHH-----
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh--------cCCCccEEE--ecccccC-----
Confidence            366889999999999999998654 344999999999999999999862        233333544  5654332     


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                       +.++||+|++..++|++    ++....+.++.+.|+|||++|-
T Consensus       112 -~~~~~DvVLa~k~LHlL----~~~~~al~~v~~~L~pggvfIS  150 (200)
T 3fzg_A          112 -YKGTYDVVFLLKMLPVL----KQQDVNILDFLQLFHTQNFVIS  150 (200)
T ss_dssp             -TTSEEEEEEEETCHHHH----HHTTCCHHHHHHTCEEEEEEEE
T ss_pred             -CCCCcChhhHhhHHHhh----hhhHHHHHHHHHHhCCCCEEEE
Confidence             46889999999999998    7788888899999999998874

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.62  E-value=7.7e-17  Score=125.88  Aligned_cols=104  Identities=22%  Similarity=0.235  Sum_probs=84.8

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++... .+|+|+|+|+.+++.|++++..        .++..++.++++|+.+.+.      
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~~~~------  141 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEV--------YGIADKIEFICGDFLLLAS------  141 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHH--------TTCGGGEEEEESCHHHHGG------
T ss_pred             cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHH--------cCCCcCeEEEECChHHhcc------
Confidence            478899999999999999998654 7999999999999999998762        2333469999999987652      


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .++||+|+++.++++.    .+....+.++.++|+|||.+++.
T Consensus       142 ~~~~D~v~~~~~~~~~----~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          142 FLKADVVFLSPPWGGP----DYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             GCCCSEEEECCCCSSG----GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             cCCCCEEEECCCcCCc----chhhhHHHHHHhhcCCcceeHHH
Confidence            5799999999988876    33444667788899999987754

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.62  E-value=2.4e-15  Score=124.20  Aligned_cols=119  Identities=18%  Similarity=0.188  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec
Q 027388           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (224)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (224)
                      ..|...+.......++++|||||||+|.++..+++.+..+|++||.|+ +++.|++.+.        .+++..+|+++++
T Consensus        69 ~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~--------~n~~~~~i~~i~~  139 (376)
T 4hc4_A           69 DAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVR--------FNGLEDRVHVLPG  139 (376)
T ss_dssp             HHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHH--------HTTCTTTEEEEES
T ss_pred             HHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHH--------HcCCCceEEEEee
Confidence            344444444445568899999999999998887777778999999996 8899998876        3466778999999


Q ss_pred             cccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      +++++.+      +++||+|++-+.-. ++..+..+..++....++|+|||.++-
T Consensus       140 ~~~~~~l------pe~~DvivsE~~~~-~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          140 PVETVEL------PEQVDAIVSEWMGY-GLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             CTTTCCC------SSCEEEEECCCCBT-TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeecC------CccccEEEeecccc-cccccchhhhHHHHHHhhCCCCceECC
Confidence            9998875      47899999854322 222345678888999999999999873

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.62  E-value=6.9e-15  Score=113.98  Aligned_cols=110  Identities=18%  Similarity=0.128  Sum_probs=87.9

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      ...++..+...++.+|||+|||+|.++..++... .+++++|+|+.+++.+++++...          . ++.++++|+.
T Consensus        59 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~----------~-~v~~~~~d~~  126 (231)
T 1vbf_A           59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY----------N-NIKLILGDGT  126 (231)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC----------S-SEEEEESCGG
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhc----------C-CeEEEECCcc
Confidence            3334444556778899999999999999888655 79999999999999999987621          2 6899999987


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      +...     ..++||+|++..+++++  .        ..+.++|+|||++++.+++.
T Consensus       127 ~~~~-----~~~~fD~v~~~~~~~~~--~--------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          127 LGYE-----EEKPYDRVVVWATAPTL--L--------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             GCCG-----GGCCEEEEEESSBBSSC--C--------HHHHHTEEEEEEEEEEECSS
T ss_pred             cccc-----cCCCccEEEECCcHHHH--H--------HHHHHHcCCCcEEEEEEcCC
Confidence            6221     24789999999999987  2        25889999999999987653

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.62  E-value=4.8e-15  Score=116.60  Aligned_cols=124  Identities=20%  Similarity=0.297  Sum_probs=98.5

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh-c-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ++......++.+|||+|||+|.++..++.. . ..+++++|+|+.+++.|++++.        ..++..++.++++|+.+
T Consensus        85 i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~  156 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK--------WAGFDDRVTIKLKDIYE  156 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH--------HHTCTTTEEEECSCGGG
T ss_pred             HHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHH--------HcCCCCceEEEECchhh
Confidence            444455678899999999999999998866 3 5799999999999999999976        23445569999999875


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhcc--cc
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEH--FC  222 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~g--f~  222 (224)
                      . .     +.+.||+|+++.         .++..++.++.++|+|||.+++..+..   ..+.+.+++.|  |.
T Consensus       157 ~-~-----~~~~~D~v~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~  215 (255)
T 3mb5_A          157 G-I-----EEENVDHVILDL---------PQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFM  215 (255)
T ss_dssp             C-C-----CCCSEEEEEECS---------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBS
T ss_pred             c-c-----CCCCcCEEEECC---------CCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence            4 2     467899999843         234578999999999999999998865   35667778888  75

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.62  E-value=1.7e-15  Score=120.70  Aligned_cols=120  Identities=13%  Similarity=0.148  Sum_probs=94.9

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      +...++.+|||+|||+|.++..++..  ...+++++|+++.+++.|++++...       .+ ..++.++++|+.+ .. 
T Consensus       106 ~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~g-~~~v~~~~~d~~~-~~-  175 (275)
T 1yb2_A          106 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF-------YD-IGNVRTSRSDIAD-FI-  175 (275)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT-------SC-CTTEEEECSCTTT-CC-
T ss_pred             cCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhc-------CC-CCcEEEEECchhc-cC-
Confidence            34567889999999999999998865  3569999999999999999987621       01 2358999999876 33 


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhcccc
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEHFC  222 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~gf~  222 (224)
                          +.+.||+|++.     +    +++..+++++.++|+|||++++.+++.   ..+.+.+.+.||.
T Consensus       176 ----~~~~fD~Vi~~-----~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~  230 (275)
T 1yb2_A          176 ----SDQMYDAVIAD-----I----PDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH  230 (275)
T ss_dssp             ----CSCCEEEEEEC-----C----SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred             ----cCCCccEEEEc-----C----cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCe
Confidence                35789999983     2    234578999999999999999999986   4566677788874

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.61  E-value=8.3e-15  Score=117.13  Aligned_cols=134  Identities=11%  Similarity=0.035  Sum_probs=93.4

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeC-ChhHHHHHHHhccCCcccccccccCC----CCeeEEecccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI-AEGSIEDCRTRYNGDADHHQRRKKFS----FPARLICGDCYEVHL  156 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~-s~~~~~~a~~~~~~~~~~~~~~~~~~----~~v~~~~~d~~~~~~  156 (224)
                      ..++.+|||||||+|.++..++..+..+|+++|+ |+.+++.+++++..+..   +..++.    .++.+...++.+...
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~---~~~~~~~~~~~~v~~~~~~~~~~~~  153 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTA---NSCSSETVKRASPKVVPYRWGDSPD  153 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-------------CCCEEEECCTTSCTH
T ss_pred             hcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhh---hhcccccCCCCCeEEEEecCCCccH
Confidence            3567899999999999999887665558999999 89999999998731100   011222    357777666544211


Q ss_pred             cccc-CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhcc---C--CeEEEEEeCC--------hHHHHHHhhhcc-c
Q 027388          157 DKVL-ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR---P--GGTFIGTMPD--------ANVIIKKLREEH-F  221 (224)
Q Consensus       157 ~~~~-~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk---~--gG~li~~~~~--------~~~~~~~~~~~g-f  221 (224)
                      .... ...++||+|++..++++.    .+...++..+.++|+   |  ||.+++....        ...+.+.+.+.| |
T Consensus       154 ~~~~~~~~~~fD~Ii~~dvl~~~----~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f  229 (281)
T 3bzb_A          154 SLQRCTGLQRFQVVLLADLLSFH----QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGAL  229 (281)
T ss_dssp             HHHHHHSCSSBSEEEEESCCSCG----GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTE
T ss_pred             HHHhhccCCCCCEEEEeCcccCh----HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCE
Confidence            0000 014789999999998875    678899999999999   9  9987664322        345667778888 6


Q ss_pred             c
Q 027388          222 C  222 (224)
Q Consensus       222 ~  222 (224)
                      .
T Consensus       230 ~  230 (281)
T 3bzb_A          230 I  230 (281)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.61  E-value=2e-15  Score=128.87  Aligned_cols=116  Identities=17%  Similarity=0.196  Sum_probs=91.2

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      ...++..+...++.+|||||||+|.++..+++....+|+++|+|+ +++.|++++.        ..++..+++++++|+.
T Consensus       147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~--------~~gl~~~v~~~~~d~~  217 (480)
T 3b3j_A          147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVK--------SNNLTDRIVVIPGKVE  217 (480)
T ss_dssp             HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHH--------HTTCTTTEEEEESCTT
T ss_pred             HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHH--------HcCCCCcEEEEECchh
Confidence            333444444457789999999999999988765566999999998 9999998876        2355567999999998


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +++.      .++||+|++..+++++  ..++....+..+.++|+|||.+++.
T Consensus       218 ~~~~------~~~fD~Ivs~~~~~~~--~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          218 EVSL------PEQVDIIISEPMGYML--FNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             TCCC------SSCEEEEECCCCHHHH--TCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             hCcc------CCCeEEEEEeCchHhc--CcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            7654      3689999998776665  3355667778999999999999864

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.61  E-value=7.4e-15  Score=113.27  Aligned_cols=125  Identities=13%  Similarity=0.100  Sum_probs=93.2

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc-c
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K  158 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~  158 (224)
                      ..++.+|||||||+|..+..++..  ...+++++|+++.+++.|++++.        ..++..+++++++|+.+.... .
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~~l~~~~  127 (221)
T 3u81_A           56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLN--------FAGLQDKVTILNGASQDLIPQLK  127 (221)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH--------HHTCGGGEEEEESCHHHHGGGTT
T ss_pred             hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHH--------HcCCCCceEEEECCHHHHHHHHH
Confidence            357889999999999999998864  35699999999999999999876        334555699999998653211 0


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHHHhhhc
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREE  219 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~~~~~~  219 (224)
                      .....++||+|++....++.    .....++..+ ++|+|||+|++...   ....+.+.+.+.
T Consensus       128 ~~~~~~~fD~V~~d~~~~~~----~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~  186 (221)
T 3u81_A          128 KKYDVDTLDMVFLDHWKDRY----LPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGS  186 (221)
T ss_dssp             TTSCCCCCSEEEECSCGGGH----HHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHC
T ss_pred             HhcCCCceEEEEEcCCcccc----hHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhC
Confidence            00012689999998877665    5566777777 99999999998643   335566666544

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.61  E-value=9.3e-15  Score=115.83  Aligned_cols=102  Identities=20%  Similarity=0.370  Sum_probs=84.8

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||||||+|.++..++... ..+++++|+|+.+++.|+++..              ++.+..+|+.+++.     
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~-----  144 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP--------------QVTFCVASSHRLPF-----  144 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCTTSCSB-----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC--------------CcEEEEcchhhCCC-----
Confidence            567899999999999999988653 5689999999999999998754              47899999887765     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHH
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK  214 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~  214 (224)
                      ..++||+|++..+..           ++.++.++|+|||.+++.+++...+.+
T Consensus       145 ~~~~fD~v~~~~~~~-----------~l~~~~~~L~pgG~l~~~~~~~~~~~~  186 (269)
T 1p91_A          145 SDTSMDAIIRIYAPC-----------KAEELARVVKPGGWVITATPGPRHLME  186 (269)
T ss_dssp             CTTCEEEEEEESCCC-----------CHHHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             CCCceeEEEEeCChh-----------hHHHHHHhcCCCcEEEEEEcCHHHHHH
Confidence            467999999876532           468899999999999999887655443

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.61  E-value=5.6e-15  Score=113.53  Aligned_cols=116  Identities=16%  Similarity=0.212  Sum_probs=81.6

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      .+..+...++.+|||||||+|.++..++... ..+++|+|+|+.|++.+.+......    .... ..++.++++|+.++
T Consensus        19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~----~~~~-~~~v~~~~~d~~~l   93 (218)
T 3mq2_A           19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKP----AKGG-LPNLLYLWATAERL   93 (218)
T ss_dssp             HHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCG----GGTC-CTTEEEEECCSTTC
T ss_pred             HHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhh----hhcC-CCceEEEecchhhC
Confidence            3444456788899999999999999998764 5689999999999986433322100    0112 23699999999987


Q ss_pred             ccccccCCCCCeeEEEEcc---ccc--cccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          155 HLDKVLADDAPFDICSCQF---AMH--YSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~---~l~--~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      +.     ..+. |.|+...   .++  |+    .++..+++++.++|||||.+++..
T Consensus        94 ~~-----~~~~-d~v~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A           94 PP-----LSGV-GELHVLMPWGSLLRGVL----GSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             CS-----CCCE-EEEEEESCCHHHHHHHH----TSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             CC-----CCCC-CEEEEEccchhhhhhhh----ccHHHHHHHHHHHcCCCcEEEEEe
Confidence            75     3344 6666332   221  32    334789999999999999999863

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.61  E-value=7.6e-15  Score=114.08  Aligned_cols=106  Identities=17%  Similarity=0.202  Sum_probs=85.5

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-cc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~  158 (224)
                      ...++.+|||||||+|..+..++.. ...+++++|+++.+++.|++++.        ..++..++.++++|+.+... . 
T Consensus        68 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~~~~~~-  138 (232)
T 3ntv_A           68 RMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLA--------TYHFENQVRIIEGNALEQFENV-  138 (232)
T ss_dssp             HHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHH--------HTTCTTTEEEEESCGGGCHHHH-
T ss_pred             hhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEECCHHHHHHhh-
Confidence            3457889999999999999998863 35689999999999999999986        23445579999999976421 1 


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                         ..++||+|++....       .....++..+.++|+|||+|++.
T Consensus       139 ---~~~~fD~V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          139 ---NDKVYDMIFIDAAK-------AQSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             ---TTSCEEEEEEETTS-------SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ---ccCCccEEEEcCcH-------HHHHHHHHHHHHhcCCCeEEEEe
Confidence               25789999977543       33567999999999999999984

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.60  E-value=1.3e-14  Score=117.21  Aligned_cols=130  Identities=17%  Similarity=0.210  Sum_probs=93.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||||||+|.++..+++. ...+++++|+|+.+++.|++++....     ......+++++++|+.+.....   
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~-----~~~~~~~v~~~~~D~~~~~~~~---  165 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQIS-----RSLADPRATVRVGDGLAFVRQT---  165 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHH-----GGGGCTTEEEEESCHHHHHHSS---
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhh-----cccCCCcEEEEECcHHHHHHhc---
Confidence            56789999999999999998865 34689999999999999999873100     0112456899999987754310   


Q ss_pred             CCCCeeEEEEccccccccCCHHHH--HHHHHHHHhhccCCeEEEEEeCCh-------HHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARA--RRALANVSALLRPGGTFIGTMPDA-------NVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~--~~~l~~~~~~lk~gG~li~~~~~~-------~~~~~~~~~~gf~  222 (224)
                      ..++||+|++.....+.  +...+  ..+++.+.++|+|||++++...+.       ..+...+++.||.
T Consensus       166 ~~~~fDvIi~d~~~~~~--~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~  233 (304)
T 3bwc_A          166 PDNTYDVVIIDTTDPAG--PASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFA  233 (304)
T ss_dssp             CTTCEEEEEEECC-----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCS
T ss_pred             cCCceeEEEECCCCccc--cchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCC
Confidence            25789999997655432  11112  689999999999999999976542       4577778888874

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.60  E-value=1.3e-14  Score=118.57  Aligned_cols=102  Identities=21%  Similarity=0.152  Sum_probs=86.4

Q ss_pred             CeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      .+|||+|||+|.++..++... ..+++++|+ +.+++.+++++.        ..++..+++++.+|+.+ +.      +.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~-~~------~~  232 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLS--------SLLAGERVSLVGGDMLQ-EV------PS  232 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTH--------HHHHTTSEEEEESCTTT-CC------CS
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHh--------hcCCCCcEEEecCCCCC-CC------CC
Confidence            899999999999999988653 458999999 999999998875        22344569999999876 33      36


Q ss_pred             CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +||+|++..++|++  +.+....+++++.+.|+|||+|++.
T Consensus       233 ~~D~v~~~~vl~~~--~~~~~~~~l~~~~~~L~pgG~l~i~  271 (334)
T 2ip2_A          233 NGDIYLLSRIIGDL--DEAASLRLLGNCREAMAGDGRVVVI  271 (334)
T ss_dssp             SCSEEEEESCGGGC--CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             CCCEEEEchhccCC--CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            79999999999987  5667789999999999999999887

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.60  E-value=4.7e-15  Score=114.79  Aligned_cols=110  Identities=18%  Similarity=0.197  Sum_probs=76.6

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCC-hhHHHHH---HHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIA-EGSIEDC---RTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s-~~~~~~a---~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      ..++.+|||||||+|.++..++.. ....|+|||+| +.|++.|   +++...        .++ .++.++++|+..++.
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~--------~~~-~~v~~~~~d~~~l~~   92 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK--------GGL-SNVVFVIAAAESLPF   92 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGG--------TCC-SSEEEECCBTTBCCG
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHH--------cCC-CCeEEEEcCHHHhhh
Confidence            457789999999999999998753 44579999999 7777776   655541        222 358999999988753


Q ss_pred             ccccCCCCCeeEEEEccccccccC-CHHHHHHHHHHHHhhccCCeEEEE
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~-~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      .    ..+.+|.|++++....... ...+...++.++.++|||||.+++
T Consensus        93 ~----~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           93 E----LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             G----GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             h----ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            1    1256777766543221000 001124689999999999999998

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.60  E-value=8.3e-15  Score=115.27  Aligned_cols=124  Identities=16%  Similarity=0.262  Sum_probs=97.4

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh-c-CCeEEEEeCChhHHHHHHHhccCCcccccccc-cCCCCeeEEecccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK-KFSFPARLICGDCY  152 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~  152 (224)
                      ++......++.+|||+|||+|.++..++.. . ..+++++|+++.+++.|++++..        . + ..++.+.++|+.
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~--------~~g-~~~v~~~~~d~~  158 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA--------FWQ-VENVRFHLGKLE  158 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--------HCC-CCCEEEEESCGG
T ss_pred             HHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------hcC-CCCEEEEECchh
Confidence            444445678899999999999999998876 3 56999999999999999998751        1 2 346899999988


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH---HHHHHhhhcccc
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN---VIIKKLREEHFC  222 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~---~~~~~~~~~gf~  222 (224)
                      +.++     +.+.||+|++..         .++..++.++.++|+|||.+++..+...   .+...+++.||.
T Consensus       159 ~~~~-----~~~~~D~v~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~  217 (258)
T 2pwy_A          159 EAEL-----EEAAYDGVALDL---------MEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR  217 (258)
T ss_dssp             GCCC-----CTTCEEEEEEES---------SCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred             hcCC-----CCCCcCEEEECC---------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence            7644     457899999842         2345789999999999999999998763   555667777774

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.60  E-value=9e-15  Score=112.74  Aligned_cols=122  Identities=11%  Similarity=0.031  Sum_probs=99.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++.+|||||||+|.+++.++... ..+++++|+++.+++.|++++.        ..++..++.+.++|..+...    
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~--------~~gl~~~I~~~~gD~l~~~~----   86 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVS--------EHGLTSKIDVRLANGLSAFE----   86 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHH--------HTTCTTTEEEEECSGGGGCC----
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEECchhhccc----
Confidence            4677899999999999999988765 4579999999999999999987        34566679999999876543    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC-ChHHHHHHhhhcccc
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP-DANVIIKKLREEHFC  222 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~-~~~~~~~~~~~~gf~  222 (224)
                       +...||+|+..+.-.      .-...++......|+++|.|+++.- +.+.+++.+.+.||.
T Consensus        87 -~~~~~D~IviaGmGg------~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~~Gf~  142 (230)
T 3lec_A           87 -EADNIDTITICGMGG------RLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAANDFE  142 (230)
T ss_dssp             -GGGCCCEEEEEEECH------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHTTEE
T ss_pred             -cccccCEEEEeCCch------HHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHHCCCE
Confidence             234799998766533      4577889999999999999998854 568899999999985

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.60  E-value=1.1e-14  Score=113.06  Aligned_cols=101  Identities=16%  Similarity=0.146  Sum_probs=80.1

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc----ccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE----VHL  156 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~  156 (224)
                      ..++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.+++++..           ..++.++++|+..    .+.
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~-----------~~~v~~~~~d~~~~~~~~~~  140 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----------RENIIPILGDANKPQEYANI  140 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----------CTTEEEEECCTTCGGGGTTT
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc-----------CCCeEEEECCCCCccccccc
Confidence            457789999999999999998866 346899999999999999988752           1468999999876    333


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                           . ..||+|+..     + ........++.++.+.|+|||.+++.
T Consensus       141 -----~-~~~D~v~~~-----~-~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          141 -----V-EKVDVIYED-----V-AQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             -----S-CCEEEEEEC-----C-CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----C-ccEEEEEEe-----c-CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence                 3 689999932     2 12233467899999999999999985

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.59  E-value=1e-13  Score=105.51  Aligned_cols=118  Identities=16%  Similarity=0.102  Sum_probs=89.5

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++..+..+++|+|+|+.+++.+++++..        .++  ++.++++|+.+++      
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~--~~~~~~~d~~~~~------  110 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGE--------FKG--KFKVFIGDVSEFN------  110 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGG--------GTT--SEEEEESCGGGCC------
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHH--------cCC--CEEEEECchHHcC------
Confidence            456789999999999999998876566899999999999999999762        222  6899999987642      


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC---hHHHHHHhhhccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD---ANVIIKKLREEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---~~~~~~~~~~~gf  221 (224)
                        ..||+|+++..++..  .......+++.+.+++  |+.+++..++   ...+.+.+.+.||
T Consensus       111 --~~~D~v~~~~p~~~~--~~~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~  167 (207)
T 1wy7_A          111 --SRVDIVIMNPPFGSQ--RKHADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGF  167 (207)
T ss_dssp             --CCCSEEEECCCCSSS--STTTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTE
T ss_pred             --CCCCEEEEcCCCccc--cCCchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCC
Confidence              489999999887654  2223456788888888  6666665433   3445666777776

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.59  E-value=8.4e-15  Score=113.81  Aligned_cols=122  Identities=19%  Similarity=0.195  Sum_probs=88.8

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++.+|||+|||+|.++..++...  ..+++|+|+|+.+++.+.+....           ..++.++++|+.+...-..
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-----------~~~v~~~~~d~~~~~~~~~  143 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-----------RTNIIPVIEDARHPHKYRM  143 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-----------CTTEEEECSCTTCGGGGGG
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-----------cCCeEEEEcccCChhhhcc
Confidence            4578899999999999999988752  46899999999887777666541           1458999999876321000


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC------------hHHHHHHhhhcccc
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD------------ANVIIKKLREEHFC  222 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~------------~~~~~~~~~~~gf~  222 (224)
                        ..+.||+|++...      .......++.++.++|+|||++++....            ...-.+.++++||.
T Consensus       144 --~~~~~D~V~~~~~------~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  210 (233)
T 2ipx_A          144 --LIAMVDVIFADVA------QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMK  210 (233)
T ss_dssp             --GCCCEEEEEECCC------CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEE
T ss_pred             --cCCcEEEEEEcCC------CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCc
Confidence              3578999998654      1234466788999999999999997543            11114667777874

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.59  E-value=1.9e-14  Score=113.06  Aligned_cols=120  Identities=13%  Similarity=0.014  Sum_probs=89.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||||||+|..+..++.. ...+|+++|+|+.+++.+++++..        .++. +++++++|+.++.....  
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~l~-~v~~~~~d~~~~~~~~~--  147 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEV--------LGLK-GARALWGRAEVLAREAG--  147 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH--------HTCS-SEEEEECCHHHHTTSTT--
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------hCCC-ceEEEECcHHHhhcccc--
Confidence            35789999999999999988865 456899999999999999998762        2333 49999999987653100  


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC-h----HHHHHHhhhccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD-A----NVIIKKLREEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~-~----~~~~~~~~~~gf  221 (224)
                      ..++||+|++..+.        +...++..+.++|+|||.+++.... .    ..+...+...||
T Consensus       148 ~~~~fD~I~s~a~~--------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~  204 (249)
T 3g89_A          148 HREAYARAVARAVA--------PLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGG  204 (249)
T ss_dssp             TTTCEEEEEEESSC--------CHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTE
T ss_pred             cCCCceEEEECCcC--------CHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCC
Confidence            24789999987542        3467899999999999998876432 1    234445555565

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.59  E-value=8e-14  Score=105.67  Aligned_cols=113  Identities=12%  Similarity=0.081  Sum_probs=82.5

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++..+..+++|+|+|+.+++.+++++.              ++.++++|+.+++      
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~--------------~~~~~~~d~~~~~------  108 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG--------------GVNFMVADVSEIS------  108 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCGGGCC------
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC--------------CCEEEECcHHHCC------
Confidence            44678999999999999998886655579999999999999998864              4899999987642      


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC-hHHHHHHhhhcc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD-ANVIIKKLREEH  220 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~-~~~~~~~~~~~g  220 (224)
                        +.||+|+++..+++.  .......+++++.+.+  |+++++..+. ...+.+.+.+.|
T Consensus       109 --~~~D~v~~~~p~~~~--~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~g  162 (200)
T 1ne2_A          109 --GKYDTWIMNPPFGSV--VKHSDRAFIDKAFETS--MWIYSIGNAKARDFLRREFSARG  162 (200)
T ss_dssp             --CCEEEEEECCCC---------CHHHHHHHHHHE--EEEEEEEEGGGHHHHHHHHHHHE
T ss_pred             --CCeeEEEECCCchhc--cCchhHHHHHHHHHhc--CcEEEEEcCchHHHHHHHHHHCC
Confidence              589999999998876  2223457889999988  5555554443 344555555554

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.58  E-value=1.1e-14  Score=111.49  Aligned_cols=106  Identities=12%  Similarity=0.043  Sum_probs=77.2

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++.+|||+|||+|.++..++... .++|+|+|+|+.|++.+.+....           ..++.++++|+........ 
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-----------~~~v~~~~~d~~~~~~~~~-  122 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-----------RNNIIPLLFDASKPWKYSG-  122 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-----------CSSEEEECSCTTCGGGTTT-
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-----------CCCeEEEEcCCCCchhhcc-
Confidence            4578899999999999998887643 46899999999987665554331           1257888888866311000 


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                       ..+.||+|++.. ..     ......+++++.++|||||.|++..
T Consensus       123 -~~~~fD~V~~~~-~~-----~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          123 -IVEKVDLIYQDI-AQ-----KNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             -TCCCEEEEEECC-CS-----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -cccceeEEEEec-cC-----hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence             237899999873 21     1345567999999999999999874

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.58  E-value=1.7e-14  Score=110.52  Aligned_cols=111  Identities=18%  Similarity=0.092  Sum_probs=86.7

Q ss_pred             HHHHHHhhcCCCeEEEecCCCchhHHHHHhhcC--CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        75 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      .++..+...++.+|||+|||+|.++..++....  .+++++|+|+.+++.+++++..        .+. .++.+.++|+.
T Consensus        68 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~-~~v~~~~~d~~  138 (215)
T 2yxe_A           68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK--------LGY-DNVIVIVGDGT  138 (215)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--------HTC-TTEEEEESCGG
T ss_pred             HHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------cCC-CCeEEEECCcc
Confidence            344444567788999999999999998886543  6899999999999999998752        122 24889999974


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      ....     ..++||+|++..+++++  .        ..+.++|+|||.+++.+++.
T Consensus       139 ~~~~-----~~~~fD~v~~~~~~~~~--~--------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          139 LGYE-----PLAPYDRIYTTAAGPKI--P--------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             GCCG-----GGCCEEEEEESSBBSSC--C--------HHHHHTEEEEEEEEEEESSS
T ss_pred             cCCC-----CCCCeeEEEECCchHHH--H--------HHHHHHcCCCcEEEEEECCC
Confidence            3221     24689999999999987  2        37899999999999987754

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.58  E-value=6.2e-15  Score=113.83  Aligned_cols=103  Identities=12%  Similarity=0.128  Sum_probs=82.3

Q ss_pred             CCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-CCeeEEeccccccccccccC
Q 027388           85 GDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~  161 (224)
                      +.+|||||||+|..+..++..  ..++++++|+++.+++.|++++.        ..++. .+++++++|+.+.... .  
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~--------~~g~~~~~i~~~~gda~~~l~~-~--  125 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFR--------EAGYSPSRVRFLLSRPLDVMSR-L--  125 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHH--------HTTCCGGGEEEECSCHHHHGGG-S--
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCcCcEEEEEcCHHHHHHH-h--
Confidence            349999999999999988864  25799999999999999999987        23444 5799999998765321 0  


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..++||+|++....       .....++..+.++|+|||++++.
T Consensus       126 ~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          126 ANDSYQLVFGQVSP-------MDLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             CTTCEEEEEECCCT-------TTHHHHHHHHHHHEEEEEEEEET
T ss_pred             cCCCcCeEEEcCcH-------HHHHHHHHHHHHHcCCCcEEEEe
Confidence            25789999987643       33567899999999999999985

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.58  E-value=1.5e-14  Score=111.22  Aligned_cols=122  Identities=11%  Similarity=0.051  Sum_probs=97.6

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++.+|||||||+|.+++.++... ..+++++|+++.+++.|++++.        ..++..++.+.++|..+.-.    
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~--------~~gl~~~i~~~~~d~l~~l~----   80 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVE--------AHGLKEKIQVRLANGLAAFE----   80 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH--------HTTCTTTEEEEECSGGGGCC----
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCceEEEEECchhhhcc----
Confidence            4577899999999999999998765 4579999999999999999987        34566679999999854211    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC-ChHHHHHHhhhcccc
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP-DANVIIKKLREEHFC  222 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~-~~~~~~~~~~~~gf~  222 (224)
                       ....||+|+..++-      ..-...++......|+++|+|+++.. ....+++.+.+.||.
T Consensus        81 -~~~~~D~IviaG~G------g~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~~Gf~  136 (225)
T 3kr9_A           81 -ETDQVSVITIAGMG------GRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQ  136 (225)
T ss_dssp             -GGGCCCEEEEEEEC------HHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHHHTTEE
T ss_pred             -cCcCCCEEEEcCCC------hHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHCCCE
Confidence             12369999876542      24467899999999999999999754 467888999999985

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.58  E-value=2.1e-14  Score=113.50  Aligned_cols=132  Identities=15%  Similarity=0.049  Sum_probs=92.6

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc--
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK--  158 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  158 (224)
                      ..++.+|||+|||+|.++..++... ..+++++|+++.+++.|++++....     ..++..++.++++|+.+.....  
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~-----~~~l~~~v~~~~~D~~~~~~~~~~  108 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPD-----NAAFSARIEVLEADVTLRAKARVE  108 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGG-----GTTTGGGEEEEECCTTCCHHHHHH
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhh-----hCCCcceEEEEeCCHHHHhhhhhh
Confidence            3467899999999999999888764 4689999999999999999987300     0234446899999998762100  


Q ss_pred             ccCCCCCeeEEEEcccccccc--------------CCHHHHHHHHHHHHhhccCCeEEEEEeCCh--HHHHHHhhh
Q 027388          159 VLADDAPFDICSCQFAMHYSW--------------STEARARRALANVSALLRPGGTFIGTMPDA--NVIIKKLRE  218 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~--------------~~~~~~~~~l~~~~~~lk~gG~li~~~~~~--~~~~~~~~~  218 (224)
                      .....+.||+|+++..+....              ........+++.+.++|+|||.|++..+..  ..+...+++
T Consensus       109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~  184 (260)
T 2ozv_A          109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGS  184 (260)
T ss_dssp             TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTT
T ss_pred             hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHh
Confidence            001357899999984433210              011226788999999999999999887653  345555554

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.58  E-value=1.7e-14  Score=112.12  Aligned_cols=122  Identities=10%  Similarity=0.031  Sum_probs=99.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++.+|||||||+|.+++.++... ..+++++|+++.+++.|++++.        ..++..++.+.++|..+...    
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~--------~~gl~~~I~v~~gD~l~~~~----   86 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVR--------SSGLTEQIDVRKGNGLAVIE----   86 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH--------HTTCTTTEEEEECSGGGGCC----
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCceEEEEecchhhccC----
Confidence            4677899999999999999988765 4479999999999999999987        34556679999999876543    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC-ChHHHHHHhhhcccc
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP-DANVIIKKLREEHFC  222 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~-~~~~~~~~~~~~gf~  222 (224)
                       +...||+|++.++-.      .-...++......|+++++|+++.- ....+++.+.+.||.
T Consensus        87 -~~~~~D~IviagmGg------~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~~Gf~  142 (244)
T 3gnl_A           87 -KKDAIDTIVIAGMGG------TLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWL  142 (244)
T ss_dssp             -GGGCCCEEEEEEECH------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHHTEE
T ss_pred             -ccccccEEEEeCCch------HHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHHCCCE
Confidence             223699998765432      4577889999999999999999854 568899999999985

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.58  E-value=9.7e-15  Score=121.14  Aligned_cols=119  Identities=13%  Similarity=0.161  Sum_probs=88.6

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCC--CCeeEEecccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS--FPARLICGDCY  152 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~--~~v~~~~~d~~  152 (224)
                      ++..+...++.+|||+|||+|.++..++... ..+++++|+|+.+++.+++++..+        ++.  .++.++.+|+.
T Consensus       214 ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n--------gl~~~~~v~~~~~D~~  285 (375)
T 4dcm_A          214 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN--------MPEALDRCEFMINNAL  285 (375)
T ss_dssp             HHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH--------CGGGGGGEEEEECSTT
T ss_pred             HHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc--------CCCcCceEEEEechhh
Confidence            3444444556899999999999999998764 568999999999999999987632        222  24788999987


Q ss_pred             ccccccccCCCCCeeEEEEccccccccC-CHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~-~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      +. .     +.+.||+|+++..+++... .......+++++.++|+|||.+++....
T Consensus       286 ~~-~-----~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          286 SG-V-----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             TT-C-----CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             cc-C-----CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            63 2     4579999999988774210 1223457899999999999999987554

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.57  E-value=1e-14  Score=107.49  Aligned_cols=110  Identities=13%  Similarity=0.103  Sum_probs=81.0

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ++.+|||+|||+|.++..++.... .++|+|+|+.+++.|++++..        .++  +++++++|+.+.... .....
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~--------~~~--~~~~~~~d~~~~~~~-~~~~~  108 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRR--------TGL--GARVVALPVEVFLPE-AKAQG  108 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHH--------HTC--CCEEECSCHHHHHHH-HHHTT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHH--------cCC--ceEEEeccHHHHHHh-hhccC
Confidence            778999999999999999886654 499999999999999998762        222  689999998763210 00013


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHH--hhccCCeEEEEEeCChHH
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPDANV  211 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~--~~lk~gG~li~~~~~~~~  211 (224)
                      ++||+|+++.+++ -  .   ...++..+.  ++|+|||++++.++....
T Consensus       109 ~~~D~i~~~~~~~-~--~---~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          109 ERFTVAFMAPPYA-M--D---LAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             CCEEEEEECCCTT-S--C---TTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             CceEEEEECCCCc-h--h---HHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            4899999987664 1  1   123444444  999999999998876543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.57  E-value=2.7e-14  Score=112.13  Aligned_cols=110  Identities=14%  Similarity=0.109  Sum_probs=86.5

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+|||||||+|..+..++...  ..+++++|+|+.+++.|++++.        ..++..++.++++|+.+.... 
T Consensus        60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~~g~~~~v~~~~~d~~~~l~~-  130 (248)
T 3tfw_A           60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQ--------LAGVDQRVTLREGPALQSLES-  130 (248)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHH--------HTTCTTTEEEEESCHHHHHHT-
T ss_pred             hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEEcCHHHHHHh-
Confidence            34578999999999999999988652  5699999999999999999986        335556799999998763211 


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      . ...++||+|++....       .....++..+.++|+|||+|++...
T Consensus       131 ~-~~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          131 L-GECPAFDLIFIDADK-------PNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             C-CSCCCCSEEEECSCG-------GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             c-CCCCCeEEEEECCch-------HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            0 023589999986643       4456799999999999999998744

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.57  E-value=1e-14  Score=116.23  Aligned_cols=124  Identities=19%  Similarity=0.218  Sum_probs=96.9

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh-c-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ++......++.+|||+|||+|.++..++.. . ..+++++|+|+.+++.|++++..        .++..++.++++|+.+
T Consensus       104 i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~v~~~~~d~~~  175 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK--------WGLIERVTIKVRDISE  175 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH--------TTCGGGEEEECCCGGG
T ss_pred             HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH--------cCCCCCEEEEECCHHH
Confidence            334445667889999999999999998876 3 56999999999999999998762        2333468999999876


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhcccc
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEHFC  222 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~gf~  222 (224)
                      . +     +.+.||+|+++.         +++..++..+.++|+|||.+++..+..   ..+.+.+++.||.
T Consensus       176 ~-~-----~~~~~D~V~~~~---------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~  232 (277)
T 1o54_A          176 G-F-----DEKDVDALFLDV---------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI  232 (277)
T ss_dssp             C-C-----SCCSEEEEEECC---------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred             c-c-----cCCccCEEEECC---------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence            5 3     356899999843         233578899999999999999998864   3566677778874

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.57  E-value=2.7e-14  Score=117.48  Aligned_cols=104  Identities=18%  Similarity=0.172  Sum_probs=81.0

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+|||||||+|.++..+++.. ..+++++|++ .++.  +++..        ..+...+++++.+|+. .+.   
T Consensus       181 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~--------~~~~~~~v~~~~~d~~-~~~---  245 (348)
T 3lst_A          181 DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLD--------APDVAGRWKVVEGDFL-REV---  245 (348)
T ss_dssp             CCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCC--------CGGGTTSEEEEECCTT-TCC---
T ss_pred             CccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--ccccc--------ccCCCCCeEEEecCCC-CCC---
Confidence            34567899999999999999988653 3478999994 4444  33322        2344567999999986 333   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        +  +||+|++..++|++  +.++...++++++++|||||+|++.
T Consensus       246 --p--~~D~v~~~~vlh~~--~d~~~~~~L~~~~~~LkpgG~l~i~  285 (348)
T 3lst_A          246 --P--HADVHVLKRILHNW--GDEDSVRILTNCRRVMPAHGRVLVI  285 (348)
T ss_dssp             --C--CCSEEEEESCGGGS--CHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             --C--CCcEEEEehhccCC--CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence              3  89999999999988  5666689999999999999999885

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.57  E-value=2.4e-14  Score=109.00  Aligned_cols=101  Identities=16%  Similarity=0.134  Sum_probs=81.9

Q ss_pred             CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ++.+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++..        .++. ++.++++|+.+..      +
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~-~v~~~~~d~~~~~------~  129 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHE--------LKLE-NIEPVQSRVEEFP------S  129 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--------TTCS-SEEEEECCTTTSC------C
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCC-CeEEEecchhhCC------c
Confidence            4789999999999999998865 356999999999999999998762        2222 3899999997754      2


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .++||+|++..+        .+...++..+.++|+|||.+++...
T Consensus       130 ~~~~D~i~~~~~--------~~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          130 EPPFDGVISRAF--------ASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             CSCEEEEECSCS--------SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             cCCcCEEEEecc--------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            478999997542        2356899999999999999998754

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.57  E-value=9.2e-15  Score=120.06  Aligned_cols=117  Identities=15%  Similarity=0.229  Sum_probs=89.9

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      ++..+....+.+|||+|||+|.++..++.... .+++++|+|+.+++.+++++...          ...+.++.+|+...
T Consensus       188 ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~----------~~~~~~~~~d~~~~  257 (343)
T 2pjd_A          188 LLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN----------GVEGEVFASNVFSE  257 (343)
T ss_dssp             HHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT----------TCCCEEEECSTTTT
T ss_pred             HHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----------CCCCEEEEcccccc
Confidence            34443344577999999999999999887654 48999999999999999987621          22356788887653


Q ss_pred             ccccccCCCCCeeEEEEccccccccC-CHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~~~-~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      .       .++||+|+++.++++... ...+...+++++.++|+|||.+++.....
T Consensus       258 ~-------~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          258 V-------KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             C-------CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             c-------cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            2       468999999998875210 23567899999999999999999986543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.57  E-value=1.5e-14  Score=119.30  Aligned_cols=133  Identities=22%  Similarity=0.292  Sum_probs=91.1

Q ss_pred             HHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCC------CchhHHHHHhh--cCCe
Q 027388           38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACG------KGGDLIKWDKA--KIGY  109 (224)
Q Consensus        38 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG------~G~~~~~l~~~--~~~~  109 (224)
                      ..|++++..|.......           ...+..+.+.++..+ ..++.+|||||||      +|..+..++..  ...+
T Consensus       182 ~~fd~lA~~Y~tDK~~~-----------~h~y~~~Ye~lL~~l-~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~  249 (419)
T 3sso_A          182 PDLSELSSRYFTPKFGF-----------LHWFTPHYDRHFRDY-RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQ  249 (419)
T ss_dssp             CCHHHHHHHTTCTTBSS-----------SCBCHHHHHHHHGGG-TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCE
T ss_pred             ccHHHHHHHhCCCcccc-----------cchHHHHHHHHHHhh-cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCE
Confidence            46777777775322220           122333344444332 3467899999999      66677766654  3568


Q ss_pred             EEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc-CCCCCeeEEEEccccccccCCHHHHHHH
Q 027388          110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL-ADDAPFDICSCQFAMHYSWSTEARARRA  188 (224)
Q Consensus       110 ~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~~~D~i~~~~~l~~~~~~~~~~~~~  188 (224)
                      ++|+|+|+.|.      ..            ..+++++++|+.+++..... ...++||+|++..+ ++.    .+...+
T Consensus       250 V~GVDiSp~m~------~~------------~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~----~d~~~a  306 (419)
T 3sso_A          250 IYGLDIMDKSH------VD------------ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HIN----AHVRTS  306 (419)
T ss_dssp             EEEEESSCCGG------GC------------BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCH----HHHHHH
T ss_pred             EEEEECCHHHh------hc------------CCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccc----hhHHHH
Confidence            99999999872      11            34699999999887652000 01478999998754 544    788999


Q ss_pred             HHHHHhhccCCeEEEEE
Q 027388          189 LANVSALLRPGGTFIGT  205 (224)
Q Consensus       189 l~~~~~~lk~gG~li~~  205 (224)
                      |++++++|||||++++.
T Consensus       307 L~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          307 FAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHHHGGGEEEEEEEEEE
T ss_pred             HHHHHHhcCCCeEEEEE
Confidence            99999999999999996

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.57  E-value=2.2e-14  Score=114.35  Aligned_cols=125  Identities=20%  Similarity=0.246  Sum_probs=95.7

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccc--cCCCCeeEEeccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK--KFSFPARLICGDC  151 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~--~~~~~v~~~~~d~  151 (224)
                      ++..+...++.+|||+|||+|.++..++..  ...+++++|+++.+++.|++++..        .  .+..++.+.++|+
T Consensus        91 i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~g~~~~~v~~~~~d~  162 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG--------CYGQPPDNWRLVVSDL  162 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH--------HHTSCCTTEEEECSCG
T ss_pred             HHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------hcCCCCCcEEEEECch
Confidence            444445678889999999999999998864  256999999999999999998751        1  1234689999999


Q ss_pred             cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHH---HHhhh-cccc
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII---KKLRE-EHFC  222 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~---~~~~~-~gf~  222 (224)
                      .+.+.     +.+.||+|++...         ++..++.++.++|+|||.+++.+++...+.   ..+++ .+|.
T Consensus       163 ~~~~~-----~~~~~D~v~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~  223 (280)
T 1i9g_A          163 ADSEL-----PDGSVDRAVLDML---------APWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  223 (280)
T ss_dssp             GGCCC-----CTTCEEEEEEESS---------CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             HhcCC-----CCCceeEEEECCc---------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence            87654     4578999998431         234789999999999999999999865443   44554 4554

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.56  E-value=4.4e-14  Score=117.28  Aligned_cols=126  Identities=16%  Similarity=0.169  Sum_probs=98.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++.+|||+|||+|.++..++.... .+++|+|+|+.+++.|++++.        ..++..++.+.++|+.+++.    
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~--------~~gl~~~i~~~~~D~~~~~~----  282 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNAL--------AAGVLDKIKFIQGDATQLSQ----  282 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHH--------HTTCGGGCEEEECCGGGGGG----
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH--------HcCCCCceEEEECChhhCCc----
Confidence            56788999999999999999886543 489999999999999999986        23444579999999998875    


Q ss_pred             CCCCCeeEEEEccccccccC---CHH-HHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcccc
Q 027388          161 ADDAPFDICSCQFAMHYSWS---TEA-RARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHFC  222 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~---~~~-~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~gf~  222 (224)
                       +.++||+|+++..++..+.   ... ....++..+.++|  ||.+++.+++...+.+.+.+.||.
T Consensus       283 -~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~~~~~~~G~~  345 (373)
T 3tm4_A          283 -YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAIEEAIAENGFE  345 (373)
T ss_dssp             -TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHHHHHHHTTEE
T ss_pred             -ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHHHcCCE
Confidence             4578999999866443211   112 2377888899988  677777788888888888888874

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.56  E-value=2.8e-14  Score=115.99  Aligned_cols=113  Identities=16%  Similarity=0.216  Sum_probs=88.8

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcC--CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      ...++..+...++.+|||||||+|.++..++....  .+|+++|+|+.+++.|++++..        .++. ++.+.++|
T Consensus        64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~g~~-~v~~~~~d  134 (317)
T 1dl5_A           64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER--------LGIE-NVIFVCGD  134 (317)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH--------TTCC-SEEEEESC
T ss_pred             HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH--------cCCC-CeEEEECC
Confidence            34445555667889999999999999998876532  4699999999999999998762        2223 38999999


Q ss_pred             ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      +.+...     ..++||+|++..+++++  .        ..+.+.|+|||++++.....
T Consensus       135 ~~~~~~-----~~~~fD~Iv~~~~~~~~--~--------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          135 GYYGVP-----EFSPYDVIFVTVGVDEV--P--------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             GGGCCG-----GGCCEEEEEECSBBSCC--C--------HHHHHHEEEEEEEEEEBCBG
T ss_pred             hhhccc-----cCCCeEEEEEcCCHHHH--H--------HHHHHhcCCCcEEEEEECCC
Confidence            876443     24789999999999987  2        46788999999999986543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.56  E-value=2.7e-14  Score=119.87  Aligned_cols=119  Identities=13%  Similarity=0.180  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHH-------HHhccCCcccccccccCC-
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDC-------RTRYNGDADHHQRRKKFS-  141 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a-------~~~~~~~~~~~~~~~~~~-  141 (224)
                      .++..++..+...++.+|||||||+|.++..++.. +..+++|||+++.+++.|       ++++..        .++. 
T Consensus       229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~--------~Gl~~  300 (433)
T 1u2z_A          229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKL--------YGMRL  300 (433)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHH--------TTBCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHH--------cCCCC
Confidence            34555555556678899999999999999998875 445799999999999988       766541        2221 


Q ss_pred             CCeeEEecccccc--ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          142 FPARLICGDCYEV--HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       142 ~~v~~~~~d~~~~--~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .++.++++|....  ++..   ..+.||+|+++.++. .    ++...++.++.+.|+|||.|++.
T Consensus       301 ~nV~~i~gD~~~~~~~~~~---~~~~FDvIvvn~~l~-~----~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          301 NNVEFSLKKSFVDNNRVAE---LIPQCDVILVNNFLF-D----EDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             CCEEEEESSCSTTCHHHHH---HGGGCSEEEECCTTC-C----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             CceEEEEcCcccccccccc---ccCCCCEEEEeCccc-c----ccHHHHHHHHHHhCCCCeEEEEe
Confidence            4688888764321  1100   136899999876662 2    67888899999999999999986

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.56  E-value=1.1e-14  Score=114.44  Aligned_cols=122  Identities=11%  Similarity=0.061  Sum_probs=83.1

Q ss_pred             CCCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCC---cccccc-----------------cccC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGD---ADHHQR-----------------RKKF  140 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~---~~~~~~-----------------~~~~  140 (224)
                      ++.+|||+|||+|.++..++..   ...+++|+|+|+.+++.|++++...   +..+..                 ....
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999999988765   2458999999999999999887632   110000                 0000


Q ss_pred             CCCee-------------EEeccccccccccccCCCCCeeEEEEccccccccC-----CHHHHHHHHHHHHhhccCCeEE
Q 027388          141 SFPAR-------------LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS-----TEARARRALANVSALLRPGGTF  202 (224)
Q Consensus       141 ~~~v~-------------~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~-----~~~~~~~~l~~~~~~lk~gG~l  202 (224)
                      ..++.             +.++|+.+............||+|+++..+.+...     .......++.++.++|+|||++
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence            00045             88999876321000001248999999876655421     1467789999999999999999


Q ss_pred             EEE
Q 027388          203 IGT  205 (224)
Q Consensus       203 i~~  205 (224)
                      ++.
T Consensus       211 ~~~  213 (250)
T 1o9g_A          211 AVT  213 (250)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            984

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.55  E-value=4e-14  Score=109.10  Aligned_cols=112  Identities=16%  Similarity=0.142  Sum_probs=86.1

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+|||||||+|..+..++...  ..+++++|+++.+++.|++++.        ..++..+++++++|+.+.....
T Consensus        55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~~~~~~  126 (223)
T 3duw_A           55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIE--------RANLNDRVEVRTGLALDSLQQI  126 (223)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHH--------HTTCTTTEEEEESCHHHHHHHH
T ss_pred             HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEEcCHHHHHHHH
Confidence            34578899999999999999988653  5699999999999999999876        3345557999999986542100


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .....+.||+|++....       .....++..+.++|+|||++++...
T Consensus       127 ~~~~~~~fD~v~~d~~~-------~~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          127 ENEKYEPFDFIFIDADK-------QNNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             HHTTCCCCSEEEECSCG-------GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             HhcCCCCcCEEEEcCCc-------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            00012679999987653       3456899999999999999998744

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.55  E-value=4.8e-14  Score=110.25  Aligned_cols=115  Identities=17%  Similarity=0.196  Sum_probs=90.1

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      +......++.+|||+|||+|.++..++.. ..+++++|+++.+++.|++++..        .++..++.+..+|+.+...
T Consensus        84 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~~~~  154 (248)
T 2yvl_A           84 ALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKK--------FNLGKNVKFFNVDFKDAEV  154 (248)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHH--------TTCCTTEEEECSCTTTSCC
T ss_pred             HHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHH--------cCCCCcEEEEEcChhhccc
Confidence            33445567889999999999999998877 67999999999999999998762        2334568999999876432


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHH
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK  214 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~  214 (224)
                           ....||+|++..         .++..++..+.++|+|||.+++..++...+.+
T Consensus       155 -----~~~~~D~v~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~  198 (248)
T 2yvl_A          155 -----PEGIFHAAFVDV---------REPWHYLEKVHKSLMEGAPVGFLLPTANQVIK  198 (248)
T ss_dssp             -----CTTCBSEEEECS---------SCGGGGHHHHHHHBCTTCEEEEEESSHHHHHH
T ss_pred             -----CCCcccEEEECC---------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHH
Confidence                 246899999742         23457889999999999999999997644433

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.55  E-value=3.7e-14  Score=110.13  Aligned_cols=109  Identities=19%  Similarity=0.232  Sum_probs=85.9

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+|||+|||+|..+..++... ..+++++|+++.+++.|++++.        ..++..++.++++|+.+.... .
T Consensus        51 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~~~~~-~  121 (233)
T 2gpy_A           51 KMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVK--------ALGLESRIELLFGDALQLGEK-L  121 (233)
T ss_dssp             HHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHH--------HTTCTTTEEEECSCGGGSHHH-H
T ss_pred             hccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEECCHHHHHHh-c
Confidence            34578899999999999999888653 5699999999999999999876        233445689999998764211 0


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                       ...+.||+|++.....       +...++..+.++|+|||++++..
T Consensus       122 -~~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          122 -ELYPLFDVLFIDAAKG-------QYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             -TTSCCEEEEEEEGGGS-------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred             -ccCCCccEEEECCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence             0146899999877643       45789999999999999999974

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.55  E-value=4e-14  Score=110.12  Aligned_cols=112  Identities=15%  Similarity=0.149  Sum_probs=86.3

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ..++..+...++.+|||||||+|.++..++.....+++++|+++.+++.|++++..        .++. ++.+..+|+ .
T Consensus        81 ~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~-~v~~~~~d~-~  150 (235)
T 1jg1_A           81 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLER--------AGVK-NVHVILGDG-S  150 (235)
T ss_dssp             HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHH--------TTCC-SEEEEESCG-G
T ss_pred             HHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH--------cCCC-CcEEEECCc-c
Confidence            33444455677889999999999999988865437999999999999999998762        1222 488999997 2


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      .+..    ...+||+|++..+++++  .        ..+.+.|+|||++++.+++.
T Consensus       151 ~~~~----~~~~fD~Ii~~~~~~~~--~--------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          151 KGFP----PKAPYDVIIVTAGAPKI--P--------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             GCCG----GGCCEEEEEECSBBSSC--C--------HHHHHTEEEEEEEEEEECSS
T ss_pred             cCCC----CCCCccEEEECCcHHHH--H--------HHHHHhcCCCcEEEEEEecC
Confidence            2221    23469999999998876  2        26789999999999998764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.54  E-value=3.7e-14  Score=109.42  Aligned_cols=111  Identities=16%  Similarity=0.121  Sum_probs=85.2

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++.+|||||||+|..+..++...  ..+++++|+++.+++.|++++.        ..++..++.++++|+.+......
T Consensus        62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~~~~~~~  133 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWE--------KAGLSDKIGLRLSPAKDTLAELI  133 (225)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHH--------HTTCTTTEEEEESCHHHHHHHHH
T ss_pred             hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHH--------HCCCCCceEEEeCCHHHHHHHhh
Confidence            3577899999999999999988652  5799999999999999999986        33455569999999865421000


Q ss_pred             -cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          160 -LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       160 -~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                       ....++||+|++....       .....++..+.++|+|||+|++...
T Consensus       134 ~~~~~~~fD~v~~~~~~-------~~~~~~l~~~~~~L~pgG~lv~~~~  175 (225)
T 3tr6_A          134 HAGQAWQYDLIYIDADK-------ANTDLYYEESLKLLREGGLIAVDNV  175 (225)
T ss_dssp             TTTCTTCEEEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             hccCCCCccEEEECCCH-------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence             0011789999976542       4567799999999999999998643

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.54  E-value=1.5e-14  Score=126.22  Aligned_cols=106  Identities=22%  Similarity=0.245  Sum_probs=80.8

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ...+.+|||||||+|.++..+++. +..|+|||+|+.+++.|+.++...+         ..++.|.+++++++....   
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~---------~~~~~~~~~~~~~~~~~~---  130 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENP---------DFAAEFRVGRIEEVIAAL---  130 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTST---------TSEEEEEECCHHHHHHHC---
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcC---------CCceEEEECCHHHHhhhc---
Confidence            356789999999999999999865 4589999999999999999876321         235899999998763210   


Q ss_pred             CCCCeeEEEEccccccccCCHHHHH--HHHHHHHhhccCCeEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARAR--RALANVSALLRPGGTFIG  204 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~--~~l~~~~~~lk~gG~li~  204 (224)
                      .+++||+|+|..+++|+    .++.  ..+..+.+.|+++|..++
T Consensus       131 ~~~~fD~v~~~e~~ehv----~~~~~~~~~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          131 EEGEFDLAIGLSVFHHI----VHLHGIDEVKRLLSRLADVTQAVI  171 (569)
T ss_dssp             CTTSCSEEEEESCHHHH----HHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred             cCCCccEEEECcchhcC----CCHHHHHHHHHHHHHhccccceee
Confidence            35789999999999998    4433  334566777777664443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.53  E-value=8.7e-14  Score=107.42  Aligned_cols=104  Identities=22%  Similarity=0.275  Sum_probs=82.6

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-C-CeEEEEeCChhHHHHHHHhccCCcccccccccC----CCCeeEEeccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-I-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF----SFPARLICGDCYEVH  155 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~----~~~v~~~~~d~~~~~  155 (224)
                      ..++.+|||+|||+|..+..++... . .+++++|+|+.+++.+++++..        .+.    ..++.++++|+....
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~~v~~~~~d~~~~~  146 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK--------DDPTLLSSGRVQLVVGDGRMGY  146 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH--------HCTHHHHTSSEEEEESCGGGCC
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh--------hcccccCCCcEEEEECCcccCc
Confidence            5678899999999999999887652 2 5899999999999999988752        111    235899999987543


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      .     ..++||+|++...++++          +..+.+.|+|||++++.++.
T Consensus       147 ~-----~~~~fD~i~~~~~~~~~----------~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          147 A-----EEAPYDAIHVGAAAPVV----------PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             G-----GGCCEEEEEECSBBSSC----------CHHHHHTEEEEEEEEEEESC
T ss_pred             c-----cCCCcCEEEECCchHHH----------HHHHHHhcCCCcEEEEEEec
Confidence            3     35689999999888765          25788999999999998764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.53  E-value=6.1e-14  Score=108.38  Aligned_cols=105  Identities=15%  Similarity=0.166  Sum_probs=83.6

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcC------CeEEEEeCChhHHHHHHHhccCCcccccccccC----CCCeeEEecc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKI------GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF----SFPARLICGD  150 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~------~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~----~~~v~~~~~d  150 (224)
                      ...++.+|||||||+|.++..++....      .+++++|+++.+++.|++++..        .++    ..++.++++|
T Consensus        77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~~~~~v~~~~~d  148 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKR--------DKPELLKIDNFKIIHKN  148 (227)
T ss_dssp             TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHH--------HCGGGGSSTTEEEEECC
T ss_pred             hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHH--------cCccccccCCEEEEECC
Confidence            356788999999999999998876543      5899999999999999998762        121    2368999999


Q ss_pred             ccccc----cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          151 CYEVH----LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       151 ~~~~~----~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      +....    .     ..++||+|++..+++++          +..+.+.|+|||++++..+.
T Consensus       149 ~~~~~~~~~~-----~~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          149 IYQVNEEEKK-----ELGLFDAIHVGASASEL----------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             GGGCCHHHHH-----HHCCEEEEEECSBBSSC----------CHHHHHHEEEEEEEEEEEEE
T ss_pred             hHhcccccCc-----cCCCcCEEEECCchHHH----------HHHHHHhcCCCcEEEEEEcc
Confidence            87643    2     24689999999988765          36788999999999998763

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.53  E-value=9.2e-14  Score=113.76  Aligned_cols=129  Identities=19%  Similarity=0.252  Sum_probs=90.2

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh-cC-CeEEEEeCChhHHHHHHHhccCCcc---cccccccCCCCeeEEecc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KI-GYYVGIDIAEGSIEDCRTRYNGDAD---HHQRRKKFSFPARLICGD  150 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~-~~~~gvD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~v~~~~~d  150 (224)
                      ++..+...++.+|||+|||+|.++..++.. +. .+++++|+++.+++.|++++...+.   .| .......++.+.++|
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln-~~~~~~~~v~~~~~d  175 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLS-HVEEWPDNVDFIHKD  175 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTT-CSSCCCCCEEEEESC
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccc-cccccCCceEEEECC
Confidence            344445678899999999999999998865 33 7899999999999999998752100   00 000123569999999


Q ss_pred             ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhh
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR  217 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~  217 (224)
                      +.+.... .  +.+.||+|++.....         ..++..+.++|+|||.|++..++...+.+.+.
T Consensus       176 ~~~~~~~-~--~~~~fD~V~~~~~~~---------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~  230 (336)
T 2b25_A          176 ISGATED-I--KSLTFDAVALDMLNP---------HVTLPVFYPHLKHGGVCAVYVVNITQVIELLD  230 (336)
T ss_dssp             TTCCC----------EEEEEECSSST---------TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHH
T ss_pred             hHHcccc-c--CCCCeeEEEECCCCH---------HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Confidence            8875210 0  346799999864322         23789999999999999999988766555443

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.52  E-value=9.3e-14  Score=109.53  Aligned_cols=126  Identities=12%  Similarity=0.093  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHhh-cCCCeEEEecCCC--chhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCe
Q 027388           70 NNWIKSVLVQLYA-RRGDVVLDLACGK--GGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA  144 (224)
Q Consensus        70 ~~~~~~~~~~~~~-~~~~~iLDiGcG~--G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v  144 (224)
                      +.|+.+.+..+.. .....|||||||+  +.++..++..  ...+|++||.|+.|++.|++++...         ...++
T Consensus        63 r~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~---------~~~~~  133 (277)
T 3giw_A           63 RDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST---------PEGRT  133 (277)
T ss_dssp             HHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC---------SSSEE
T ss_pred             HHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC---------CCCcE
Confidence            4566666665543 3447899999997  4455555442  4568999999999999999988621         12358


Q ss_pred             eEEecccccccc--ccccCCCCCee-----EEEEccccccccCCHHH-HHHHHHHHHhhccCCeEEEEEeC
Q 027388          145 RLICGDCYEVHL--DKVLADDAPFD-----ICSCQFAMHYSWSTEAR-ARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       145 ~~~~~d~~~~~~--~~~~~~~~~~D-----~i~~~~~l~~~~~~~~~-~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .|+++|+.+...  .... ....||     .|+++.+|||+  +..+ +..+++++.+.|+|||+|++++.
T Consensus       134 ~~v~aD~~~~~~~l~~~~-~~~~~D~~~p~av~~~avLH~l--~d~~~p~~~l~~l~~~L~PGG~Lvls~~  201 (277)
T 3giw_A          134 AYVEADMLDPASILDAPE-LRDTLDLTRPVALTVIAIVHFV--LDEDDAVGIVRRLLEPLPSGSYLAMSIG  201 (277)
T ss_dssp             EEEECCTTCHHHHHTCHH-HHTTCCTTSCCEEEEESCGGGS--CGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred             EEEEecccChhhhhcccc-cccccCcCCcchHHhhhhHhcC--CchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence            999999987531  0000 012344     58889999998  3322 68899999999999999999843

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.52  E-value=1.2e-13  Score=108.17  Aligned_cols=133  Identities=15%  Similarity=0.222  Sum_probs=88.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-ccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~  160 (224)
                      .++.+|||||||+|.++..++.... ..++|||+|+.+++.+++++......+....++ .++.++++|+.+ ++.   .
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~---~  123 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPN---F  123 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGG---T
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHH---h
Confidence            4678999999999999999987653 489999999999999988765210000000022 369999999876 331   1


Q ss_pred             CCCCCeeEEEEccccccccCCHH-----HHHHHHHHHHhhccCCeEEEEEeCChH---HHHHHhhhcc
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEA-----RARRALANVSALLRPGGTFIGTMPDAN---VIIKKLREEH  220 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~-----~~~~~l~~~~~~lk~gG~li~~~~~~~---~~~~~~~~~g  220 (224)
                      ...+.+|.|+....--+. ....     ....++..+.++|+|||.|++.+.+..   .+.+.+.+.+
T Consensus       124 ~~~~~~d~v~~~~p~p~~-k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  190 (246)
T 2vdv_E          124 FEKGQLSKMFFCFPDPHF-KQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP  190 (246)
T ss_dssp             SCTTCEEEEEEESCCCC-------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHST
T ss_pred             ccccccCEEEEECCCccc-ccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCc
Confidence            146789999865422111 0000     014799999999999999999876643   3344444443

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.52  E-value=7.2e-14  Score=111.79  Aligned_cols=121  Identities=13%  Similarity=0.077  Sum_probs=87.6

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ..++..+...++.+|||+|||+|.++..++.....+++++|+|+.+++.|++++.        ..++..++.++++|+.+
T Consensus       113 ~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~--------~~~l~~~v~~~~~D~~~  184 (284)
T 1nv8_A          113 ELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAE--------RHGVSDRFFVRKGEFLE  184 (284)
T ss_dssp             HHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHH--------HTTCTTSEEEEESSTTG
T ss_pred             HHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCceEEEECcchh
Confidence            3333333334678999999999999999886645689999999999999999976        23444469999999876


Q ss_pred             cccccccCCCCCe---eEEEEccccccc---------cCCH------HHHHHHHHHHH-hhccCCeEEEEEeCCh
Q 027388          154 VHLDKVLADDAPF---DICSCQFAMHYS---------WSTE------ARARRALANVS-ALLRPGGTFIGTMPDA  209 (224)
Q Consensus       154 ~~~~~~~~~~~~~---D~i~~~~~l~~~---------~~~~------~~~~~~l~~~~-~~lk~gG~li~~~~~~  209 (224)
                      ..       .+.|   |+|+++-.....         +.+.      .+...+++++. +.++|||+|++..+..
T Consensus       185 ~~-------~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~  252 (284)
T 1nv8_A          185 PF-------KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  252 (284)
T ss_dssp             GG-------GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             hc-------ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence            32       2468   999997321100         0111      11237899999 9999999999987753

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.52  E-value=2.1e-13  Score=105.58  Aligned_cols=123  Identities=15%  Similarity=0.124  Sum_probs=86.3

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      .+.++.+|||+|||+|.++..++..  ..+.|+++|+|+.|++...+....           ..++.++++|+.......
T Consensus        73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-----------r~nv~~i~~Da~~~~~~~  141 (232)
T 3id6_C           73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-----------RPNIFPLLADARFPQSYK  141 (232)
T ss_dssp             SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-----------CTTEEEEECCTTCGGGTT
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----------cCCeEEEEcccccchhhh
Confidence            3678999999999999999988764  356999999999987554433220           135899999987543210


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC------------ChHHHHHHhhhcccc
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP------------DANVIIKKLREEHFC  222 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~------------~~~~~~~~~~~~gf~  222 (224)
                      .  ..+.||+|++..+..      .....+...+.+.|||||.|++...            +.......++++||.
T Consensus       142 ~--~~~~~D~I~~d~a~~------~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~  209 (232)
T 3id6_C          142 S--VVENVDVLYVDIAQP------DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFE  209 (232)
T ss_dssp             T--TCCCEEEEEECCCCT------THHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEE
T ss_pred             c--cccceEEEEecCCCh------hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCE
Confidence            0  246899999886541      2233345566669999999998732            235667788877874

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.52  E-value=3.5e-14  Score=108.54  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=82.2

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc-ccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKV  159 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~  159 (224)
                      .++.+|||||||+|..+..++...  ..+++++|+|+.+++.|++++.        ..++..+++++++|+.+. +.   
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~~~~~---  123 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLH--------DNGLIDRVELQVGDPLGIAAG---  123 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH--------HHSGGGGEEEEESCHHHHHTT---
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HCCCCceEEEEEecHHHHhcc---
Confidence            467899999999999999987652  5699999999999999999876        233445689999998754 22   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                        ..+ ||+|++....       .+...+++.+.++|+|||++++..
T Consensus       124 --~~~-fD~v~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          124 --QRD-IDILFMDCDV-------FNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             --CCS-EEEEEEETTT-------SCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             --CCC-CCEEEEcCCh-------hhhHHHHHHHHHhcCCCeEEEEEC
Confidence              235 9999987432       345789999999999999999853

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.52  E-value=1.8e-14  Score=112.76  Aligned_cols=109  Identities=17%  Similarity=0.158  Sum_probs=85.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++.+|||||||+|..+..++..  ..++|+++|+++.+++.|++++.        ..++..+++++++|+.+......
T Consensus        58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~--------~~g~~~~i~~~~gda~~~l~~~~  129 (242)
T 3r3h_A           58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWR--------EAKQEHKIKLRLGPALDTLHSLL  129 (242)
T ss_dssp             HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHH--------HTTCTTTEEEEESCHHHHHHHHH
T ss_pred             hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEEcCHHHHHHHHh
Confidence            457789999999999999998864  25699999999999999999876        33555679999999876432100


Q ss_pred             c-CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 L-ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~-~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      . ...++||+|++....       .....+++.+.++|+|||+|++.
T Consensus       130 ~~~~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          130 NEGGEHQFDFIFIDADK-------TNYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             HHHCSSCEEEEEEESCG-------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hccCCCCEeEEEEcCCh-------HHhHHHHHHHHHhcCCCeEEEEE
Confidence            0 004789999987642       44667899999999999999985

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.52  E-value=5.4e-13  Score=109.91  Aligned_cols=105  Identities=13%  Similarity=0.096  Sum_probs=86.2

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      .....+|||||||+|.++..+++..+ .+++..|+ +.+++.+++.+..         ....+++++.+|+.+.+     
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~---------~~~~rv~~~~gD~~~~~-----  241 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSF---------QEEEQIDFQEGDFFKDP-----  241 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----------CCSEEEEESCTTTSC-----
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhh---------cccCceeeecCccccCC-----
Confidence            45668999999999999999987644 46778887 7799999988762         33567999999987543     


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ...+|++++..++|++  +.++...+|+++++.|+|||.|+|.
T Consensus       242 --~~~~D~~~~~~vlh~~--~d~~~~~iL~~~~~al~pgg~lli~  282 (353)
T 4a6d_A          242 --LPEADLYILARVLHDW--ADGKCSHLLERIYHTCKPGGGILVI  282 (353)
T ss_dssp             --CCCCSEEEEESSGGGS--CHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             --CCCceEEEeeeecccC--CHHHHHHHHHHHHhhCCCCCEEEEE
Confidence              3468999999999987  6777889999999999999988875

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.51  E-value=8e-14  Score=113.81  Aligned_cols=114  Identities=17%  Similarity=0.106  Sum_probs=84.5

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCC-CeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||+|||+|.++..++..+. +|++||+|+.+++.|++++.        ..++.. ++.++++|+.++.... ..
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~--------~~gl~~~~v~~i~~D~~~~l~~~-~~  221 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQV--------LAGLEQAPIRWICEDAMKFIQRE-ER  221 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHH--------HHTCTTSCEEEECSCHHHHHHHH-HH
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHH--------HcCCCccceEEEECcHHHHHHHH-Hh
Confidence            4678999999999999999886555 99999999999999999976        223333 4899999987653210 00


Q ss_pred             CCCCeeEEEEcccccc------ccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          162 DDAPFDICSCQFAMHY------SWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~------~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ....||+|+++.....      ++....+...++..+.++|+|||+|++..
T Consensus       222 ~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~  272 (332)
T 2igt_A          222 RGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  272 (332)
T ss_dssp             HTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             cCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            1468999998543111      01123678899999999999999977754

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.51  E-value=1.9e-13  Score=110.91  Aligned_cols=128  Identities=20%  Similarity=0.226  Sum_probs=92.2

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      +...++.+|||+|||+|..+..++..  ....++++|+|+.+++.+++++..        .++. ++.++++|+..++. 
T Consensus       114 l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~--------~g~~-~v~~~~~D~~~~~~-  183 (315)
T 1ixk_A          114 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR--------LGVL-NVILFHSSSLHIGE-  183 (315)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH--------HTCC-SEEEESSCGGGGGG-
T ss_pred             hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH--------hCCC-eEEEEECChhhccc-
Confidence            34567889999999999999998865  346899999999999999999762        2222 58999999887653 


Q ss_pred             cccCCCCCeeEEEEcc------ccccccC-----CH-------HHHHHHHHHHHhhccCCeEEEEEeCC------hHHHH
Q 027388          158 KVLADDAPFDICSCQF------AMHYSWS-----TE-------ARARRALANVSALLRPGGTFIGTMPD------ANVII  213 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~------~l~~~~~-----~~-------~~~~~~l~~~~~~lk~gG~li~~~~~------~~~~~  213 (224)
                          ..+.||+|++..      ++....+     ..       ..+..++.++.++|||||+|++++..      ...+.
T Consensus       184 ----~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~  259 (315)
T 1ixk_A          184 ----LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQ  259 (315)
T ss_dssp             ----GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHH
T ss_pred             ----ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHH
Confidence                246899999842      2221100     00       12368999999999999999997542      23445


Q ss_pred             HHhhhccc
Q 027388          214 KKLREEHF  221 (224)
Q Consensus       214 ~~~~~~gf  221 (224)
                      ..+++.+|
T Consensus       260 ~~l~~~~~  267 (315)
T 1ixk_A          260 WALDNFDV  267 (315)
T ss_dssp             HHHHHSSE
T ss_pred             HHHhcCCC
Confidence            55665554

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.51  E-value=4.9e-14  Score=104.11  Aligned_cols=112  Identities=19%  Similarity=0.254  Sum_probs=83.3

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-c-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc----
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH----  155 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----  155 (224)
                      ..++.+|||+|||+|.++..++.. + ..+++++|+++ +++.                   .++.++++|+.+.+    
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-------------------~~~~~~~~d~~~~~~~~~   79 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-------------------VGVDFLQGDFRDELVMKA   79 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-------------------TTEEEEESCTTSHHHHHH
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-------------------CcEEEEEcccccchhhhh
Confidence            467789999999999999988866 2 36999999999 6432                   24888999988765    


Q ss_pred             ----cccccCCCCCeeEEEEccccccccCCHHH-------HHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhh
Q 027388          156 ----LDKVLADDAPFDICSCQFAMHYSWSTEAR-------ARRALANVSALLRPGGTFIGTMPDA---NVIIKKLRE  218 (224)
Q Consensus       156 ----~~~~~~~~~~~D~i~~~~~l~~~~~~~~~-------~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~  218 (224)
                          .     +.++||+|+++.++++......+       ...++..+.++|+|||.+++.++..   ..+...+.+
T Consensus        80 ~~~~~-----~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~  151 (180)
T 1ej0_A           80 LLERV-----GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             HHHHH-----TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             hhccC-----CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH
Confidence                3     45789999998887764111111       1688999999999999999976643   344444443

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.51  E-value=9.2e-14  Score=108.33  Aligned_cols=111  Identities=14%  Similarity=0.100  Sum_probs=84.7

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+|||||||+|..+..++...  ..+++++|+++.+++.|++++..        .++..++.++++|+.+.....
T Consensus        57 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--------~g~~~~v~~~~~d~~~~~~~~  128 (239)
T 2hnk_A           57 KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE--------NGLENKIFLKLGSALETLQVL  128 (239)
T ss_dssp             HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH--------TTCGGGEEEEESCHHHHHHHH
T ss_pred             HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCCEEEEECCHHHHHHHH
Confidence            34578899999999999999988653  56999999999999999998762        233445899999976531100


Q ss_pred             ----------ccCCC--CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          159 ----------VLADD--APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       159 ----------~~~~~--~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                                ..++.  ++||+|++....       .....++..+.++|+|||++++..
T Consensus       129 ~~~~~~~~~~~~f~~~~~~fD~I~~~~~~-------~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          129 IDSKSAPSWASDFAFGPSSIDLFFLDADK-------ENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             HHCSSCCGGGTTTCCSTTCEEEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HhhcccccccccccCCCCCcCEEEEeCCH-------HHHHHHHHHHHHHcCCCeEEEEEc
Confidence                      00112  789999988654       345688999999999999999975

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.50  E-value=2e-13  Score=103.41  Aligned_cols=117  Identities=18%  Similarity=0.166  Sum_probs=80.1

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc---CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc-
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-  157 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~---~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-  157 (224)
                      ..++.+|||+|||+|.++..++...   ..+++|+|+|+..        .            ..++.++++|+.+.... 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~------------~~~v~~~~~d~~~~~~~~   79 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------P------------IPNVYFIQGEIGKDNMNN   79 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------C------------CTTCEEEECCTTTTSSCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------C------------CCCceEEEccccchhhhh
Confidence            3567899999999999999988653   4689999999931        1            12478889998765400 


Q ss_pred             -----------------c--ccCCCCCeeEEEEccccccccCCHHH-------HHHHHHHHHhhccCCeEEEEEeCC---
Q 027388          158 -----------------K--VLADDAPFDICSCQFAMHYSWSTEAR-------ARRALANVSALLRPGGTFIGTMPD---  208 (224)
Q Consensus       158 -----------------~--~~~~~~~~D~i~~~~~l~~~~~~~~~-------~~~~l~~~~~~lk~gG~li~~~~~---  208 (224)
                                       .  ...+..+||+|++..++++.-....+       ...++..+.++|+|||.|++.+..   
T Consensus        80 ~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~  159 (201)
T 2plw_A           80 IKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQ  159 (201)
T ss_dssp             C-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTT
T ss_pred             hccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCC
Confidence                             0  00135789999998877652000111       234889999999999999987554   


Q ss_pred             hHHHHHHhhh
Q 027388          209 ANVIIKKLRE  218 (224)
Q Consensus       209 ~~~~~~~~~~  218 (224)
                      ...+...+.+
T Consensus       160 ~~~l~~~l~~  169 (201)
T 2plw_A          160 TNNLKTYLKG  169 (201)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            3445555543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.49  E-value=4.7e-13  Score=109.88  Aligned_cols=139  Identities=15%  Similarity=0.158  Sum_probs=100.4

Q ss_pred             ehhhhHHHHHHHHHHH-hhcCCCeEEEecCCCchhHHHHHhhcC------CeEEEEeCChhHHHHHHHhccCCccccccc
Q 027388           65 HLKKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKAKI------GYYVGIDIAEGSIEDCRTRYNGDADHHQRR  137 (224)
Q Consensus        65 ~~~~~~~~~~~~~~~~-~~~~~~~iLDiGcG~G~~~~~l~~~~~------~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~  137 (224)
                      ++..+...+..++..+ ...++.+|||+|||+|.++..++....      ..++|+|+++.+++.|+.++..        
T Consensus       110 TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~--------  181 (344)
T 2f8l_A          110 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL--------  181 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH--------
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHh--------
Confidence            4455555555554433 234568999999999999998875432      5799999999999999998651        


Q ss_pred             ccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHH----------------HHHHHHHHHhhccCCeE
Q 027388          138 KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR----------------ARRALANVSALLRPGGT  201 (224)
Q Consensus       138 ~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~----------------~~~~l~~~~~~lk~gG~  201 (224)
                      .++  ++.++++|.....      ....||+|+++..++++  +..+                ...++..+.+.|+|||+
T Consensus       182 ~g~--~~~i~~~D~l~~~------~~~~fD~Ii~NPPfg~~--~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~  251 (344)
T 2f8l_A          182 QRQ--KMTLLHQDGLANL------LVDPVDVVISDLPVGYY--PDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGY  251 (344)
T ss_dssp             HTC--CCEEEESCTTSCC------CCCCEEEEEEECCCSEE--SCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEE
T ss_pred             CCC--CceEEECCCCCcc------ccCCccEEEECCCCCCc--CchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCE
Confidence            222  4788999976532      35789999999887665  2222                13689999999999999


Q ss_pred             EEEEeCC-------hHHHHHHhhhccc
Q 027388          202 FIGTMPD-------ANVIIKKLREEHF  221 (224)
Q Consensus       202 li~~~~~-------~~~~~~~~~~~gf  221 (224)
                      +++.+|+       ...+++.+.+.++
T Consensus       252 ~~~v~p~~~~~~~~~~~ir~~l~~~~~  278 (344)
T 2f8l_A          252 LFFLVPDAMFGTSDFAKVDKFIKKNGH  278 (344)
T ss_dssp             EEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred             EEEEECchhcCCchHHHHHHHHHhCCe
Confidence            9988753       3567777777665

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.49  E-value=7e-14  Score=111.50  Aligned_cols=108  Identities=10%  Similarity=0.067  Sum_probs=76.2

Q ss_pred             HHHHHHhh-cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCee-EEecccc
Q 027388           75 SVLVQLYA-RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDCY  152 (224)
Q Consensus        75 ~~~~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~  152 (224)
                      .++..... .++.+|||||||||.++..+++.+..+|+|||+|+.|++.+.+...              ++. +...++.
T Consensus        75 ~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~--------------rv~~~~~~ni~  140 (291)
T 3hp7_A           75 KALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD--------------RVRSMEQYNFR  140 (291)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT--------------TEEEECSCCGG
T ss_pred             HHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc--------------ccceecccCce
Confidence            34443333 3567999999999999998887766799999999999998654322              122 2223443


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .+.....  +...||+|++..+++++       ..++.++.++|+|||.|++.
T Consensus       141 ~l~~~~l--~~~~fD~v~~d~sf~sl-------~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          141 YAEPVDF--TEGLPSFASIDVSFISL-------NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             GCCGGGC--TTCCCSEEEECCSSSCG-------GGTHHHHHHHSCTTCEEEEE
T ss_pred             ecchhhC--CCCCCCEEEEEeeHhhH-------HHHHHHHHHHcCcCCEEEEE
Confidence            3332111  23459999998877643       67899999999999998875

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.49  E-value=1.1e-13  Score=107.11  Aligned_cols=105  Identities=19%  Similarity=0.202  Sum_probs=82.6

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcC-------CeEEEEeCChhHHHHHHHhccCCcccccccccC----CCCeeEEec
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKI-------GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF----SFPARLICG  149 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~-------~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~----~~~v~~~~~  149 (224)
                      ...++.+|||||||+|.++..++....       .+++++|+++.+++.+++++...        +.    ..++.+.++
T Consensus        81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~~~~~v~~~~~  152 (227)
T 1r18_A           81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTD--------DRSMLDSGQLLIVEG  152 (227)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHH--------HHHHHHHTSEEEEES
T ss_pred             hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhc--------CccccCCCceEEEEC
Confidence            356788999999999999998876432       58999999999999999887521        10    235899999


Q ss_pred             cccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      |+.. ...    ..++||+|++..++++++          ..+.+.|+|||++++.+..
T Consensus       153 d~~~-~~~----~~~~fD~I~~~~~~~~~~----------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          153 DGRK-GYP----PNAPYNAIHVGAAAPDTP----------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             CGGG-CCG----GGCSEEEEEECSCBSSCC----------HHHHHTEEEEEEEEEEESC
T ss_pred             Cccc-CCC----cCCCccEEEECCchHHHH----------HHHHHHhcCCCEEEEEEec
Confidence            9875 221    237899999999988761          6789999999999998764

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.49  E-value=1e-13  Score=108.08  Aligned_cols=112  Identities=19%  Similarity=0.152  Sum_probs=83.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc---
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV---  154 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~---  154 (224)
                      .++.+|||||||+|..+..++..     ...+|++||+|+.+++.|+..              ..+++++++|+.+.   
T Consensus        80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~--------------~~~v~~~~gD~~~~~~l  145 (236)
T 2bm8_A           80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD--------------MENITLHQGDCSDLTTF  145 (236)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG--------------CTTEEEEECCSSCSGGG
T ss_pred             cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc--------------CCceEEEECcchhHHHH
Confidence            46789999999999999988765     357899999999998877621              23699999999874   


Q ss_pred             ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHh-hccCCeEEEEEeC-------ChHHHHHHhhhc
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA-LLRPGGTFIGTMP-------DANVIIKKLREE  219 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~-~lk~gG~li~~~~-------~~~~~~~~~~~~  219 (224)
                      +..    ...+||+|++... +      .+...++.++.+ +|+|||+|++...       +...+.+.+++.
T Consensus       146 ~~~----~~~~fD~I~~d~~-~------~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~  207 (236)
T 2bm8_A          146 EHL----REMAHPLIFIDNA-H------ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAF  207 (236)
T ss_dssp             GGG----SSSCSSEEEEESS-C------SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTT
T ss_pred             Hhh----ccCCCCEEEECCc-h------HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhC
Confidence            321    2347999998665 2      245678999997 9999999999631       334556666554

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.48  E-value=1.3e-13  Score=108.05  Aligned_cols=109  Identities=12%  Similarity=0.078  Sum_probs=84.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++.+|||||||+|..+..++...  ..+++++|+++.+++.|++++.        ..++..+++++++|+.+......
T Consensus        77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~--------~~g~~~~i~~~~gda~~~l~~l~  148 (247)
T 1sui_A           77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIK--------KAGVDHKIDFREGPALPVLDEMI  148 (247)
T ss_dssp             HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHH--------HTTCGGGEEEEESCHHHHHHHHH
T ss_pred             hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCCeEEEECCHHHHHHHHH
Confidence            3567899999999999999888652  4699999999999999999876        23445579999999865421000


Q ss_pred             cC--CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LA--DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~--~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..  ..++||+|++....       .....++..+.++|+|||+|++.
T Consensus       149 ~~~~~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          149 KDEKNHGSYDFIFVDADK-------DNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             HSGGGTTCBSEEEECSCS-------TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             hccCCCCCEEEEEEcCch-------HHHHHHHHHHHHhCCCCeEEEEe
Confidence            00  04789999987542       34678999999999999999986

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.48  E-value=2.2e-13  Score=121.31  Aligned_cols=128  Identities=16%  Similarity=0.190  Sum_probs=96.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-CCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||+|||+|.++..++..+..+|++||+|+.+++.|++++..        .++. .++.++++|+.+....    
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~--------ngl~~~~v~~i~~D~~~~l~~----  605 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRL--------NGLTGRAHRLIQADCLAWLRE----  605 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--------TTCCSTTEEEEESCHHHHHHH----
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCCccceEEEecCHHHHHHh----
Confidence            47889999999999999998876666799999999999999999872        3444 4699999998764211    


Q ss_pred             CCCCeeEEEEccccc-------cccCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQFAMH-------YSWSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~-------~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~~gf~  222 (224)
                      ..++||+|++.....       ..+....+...++..+.++|+|||+|++++..  ...-.+.+.+.||.
T Consensus       606 ~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~  675 (703)
T 3v97_A          606 ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLK  675 (703)
T ss_dssp             CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEE
T ss_pred             cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCc
Confidence            357899999865321       01123467888999999999999999998754  22224555666653

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.48  E-value=1.3e-13  Score=114.91  Aligned_cols=117  Identities=13%  Similarity=0.133  Sum_probs=88.3

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCC-CeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..        .++.. ++.++++|+.+.... ...
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~--------n~~~~~~v~~~~~D~~~~l~~-~~~  281 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA--------NHLDMANHQLVVMDVFDYFKY-ARR  281 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH--------TTCCCTTEEEEESCHHHHHHH-HHH
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCccceEEEECCHHHHHHH-HHH
Confidence            46789999999999999999865666899999999999999999862        34443 699999998763210 000


Q ss_pred             CCCCeeEEEEcccc-----ccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          162 DDAPFDICSCQFAM-----HYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       162 ~~~~~D~i~~~~~l-----~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ....||+|++....     ............++..+.++|+|||+|++++..
T Consensus       282 ~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~  333 (385)
T 2b78_A          282 HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  333 (385)
T ss_dssp             TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            23589999986433     223233456777889999999999999998653

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.48  E-value=2.7e-13  Score=109.30  Aligned_cols=110  Identities=10%  Similarity=0.023  Sum_probs=82.4

Q ss_pred             CeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      .+|||||||+|.++..+++. ...++++||+++.+++.|++++..         ....+++++++|+.++... .  ..+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~---------~~~~rv~v~~~Da~~~l~~-~--~~~  158 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI---------PRAPRVKIRVDDARMVAES-F--TPA  158 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC---------CCTTTEEEEESCHHHHHHT-C--CTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc---------cCCCceEEEECcHHHHHhh-c--cCC
Confidence            49999999999999999873 445899999999999999999862         1245799999998765321 0  257


Q ss_pred             CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      +||+|++....+......-....+++.++++|+|||+|++...
T Consensus       159 ~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          159 SRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             CEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            8999998654332100000126799999999999999998754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.48  E-value=4.8e-13  Score=103.34  Aligned_cols=106  Identities=17%  Similarity=0.147  Sum_probs=81.5

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++.+|||+|||+|.++..++...  ..+++++|+|+.+++.+++++..           ..++.++++|+.+......
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~~  139 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----------RRNIVPILGDATKPEEYRA  139 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----------CTTEEEEECCTTCGGGGTT
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-----------cCCCEEEEccCCCcchhhc
Confidence            4578899999999999999988652  36899999999999999888762           1468999999876421000


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                        ..+.||+|++....      ......++.++.++|+|||.+++..
T Consensus       140 --~~~~~D~v~~~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          140 --LVPKVDVIFEDVAQ------PTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             --TCCCEEEEEECCCS------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --ccCCceEEEECCCC------HhHHHHHHHHHHHhcCCCCEEEEEE
Confidence              23589999986541      1334556999999999999998863

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.47  E-value=2.9e-13  Score=108.16  Aligned_cols=118  Identities=15%  Similarity=0.128  Sum_probs=83.3

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCC--cccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGD--ADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...+.+|||||||+|..+..+++....++++||+++.+++.|++++ ..  +........-..+++++++|+.+...   
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~---  148 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIK---  148 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHH---
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhc---
Confidence            3467899999999999999988764568999999999999999987 21  00000000014568999999865422   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHH--HHHHHHHHHhhccCCeEEEEEeC
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEAR--ARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~--~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                        ..+.||+|++.......  ....  ...+++.+.++|+|||++++...
T Consensus       149 --~~~~fD~Ii~d~~~~~~--~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          149 --NNRGFDVIIADSTDPVG--PAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             --HCCCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --ccCCeeEEEECCCCCCC--cchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence              14689999987653221  1122  26789999999999999999753

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.47  E-value=2.1e-13  Score=108.53  Aligned_cols=117  Identities=15%  Similarity=0.185  Sum_probs=85.1

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+|||+|||+|..+..++..  +..+++++|+|+.+++.+++++..        .++. ++.++++|+.+++...
T Consensus        80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~--------~g~~-~v~~~~~D~~~~~~~~  150 (274)
T 3ajd_A           80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR--------MGVL-NTIIINADMRKYKDYL  150 (274)
T ss_dssp             CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHH--------TTCC-SEEEEESCHHHHHHHH
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHH--------hCCC-cEEEEeCChHhcchhh
Confidence            4567889999999999999988864  337999999999999999998762        2233 6899999987664310


Q ss_pred             ccCCCCCeeEEEEccccc---cc-----------cCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          159 VLADDAPFDICSCQFAMH---YS-----------WSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~---~~-----------~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      . ...+.||+|++.....   .+           ..-...+..++..+.++|||||.|++++.
T Consensus       151 ~-~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          151 L-KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             H-HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             h-hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            0 0146899999863211   00           00002357899999999999999999765

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.46  E-value=2.6e-13  Score=112.53  Aligned_cols=98  Identities=17%  Similarity=0.170  Sum_probs=80.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++.+|||||||+|.++..++... ..+++++|+ +.+++.+++.               .+++++.+|+.+ +.    
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---------------~~v~~~~~d~~~-~~----  265 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL---------------SGIEHVGGDMFA-SV----  265 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---------------TTEEEEECCTTT-CC----
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc---------------CCCEEEeCCccc-CC----
Confidence            3457899999999999999988754 457889999 8888766431               248999999876 43    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       + . ||+|++..++|++  +......++++++++|+|||+|++.
T Consensus       266 -~-~-~D~v~~~~~lh~~--~d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          266 -P-Q-GDAMILKAVCHNW--SDEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             -C-C-EEEEEEESSGGGS--CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -C-C-CCEEEEecccccC--CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence             2 2 9999999999998  5556669999999999999999886

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.46  E-value=4.2e-13  Score=111.04  Aligned_cols=98  Identities=14%  Similarity=0.147  Sum_probs=80.4

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++.               .+++++.+|+.+ +.    
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~v~~~~~D~~~-~~----  257 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF---------------PGVTHVGGDMFK-EV----  257 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---------------TTEEEEECCTTT-CC----
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc---------------CCeEEEeCCcCC-CC----
Confidence            3457899999999999999998653 457999999 7777665432               359999999876 54    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       +. . |+|++..++|++  +.++...+|+++++.|+|||+|++.
T Consensus       258 -p~-~-D~v~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          258 -PS-G-DTILMKWILHDW--SDQHCATLLKNCYDALPAHGKVVLV  297 (364)
T ss_dssp             -CC-C-SEEEEESCGGGS--CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             -CC-C-CEEEehHHhccC--CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence             32 3 999999999987  6678889999999999999999885

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.46  E-value=3.4e-13  Score=111.75  Aligned_cols=97  Identities=16%  Similarity=0.156  Sum_probs=79.5

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++.               .+++++.+|+.+ +.     
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~v~~~~~d~~~-~~-----  259 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF---------------SGVEHLGGDMFD-GV-----  259 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---------------TTEEEEECCTTT-CC-----
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc---------------CCCEEEecCCCC-CC-----
Confidence            456899999999999999998753 457999999 8787665432               358999999875 43     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +. . |+|++..++|++  +.++...+|+++++.|+|||+|++.
T Consensus       260 p~-~-D~v~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~  299 (368)
T 3reo_A          260 PK-G-DAIFIKWICHDW--SDEHCLKLLKNCYAALPDHGKVIVA  299 (368)
T ss_dssp             CC-C-SEEEEESCGGGB--CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             CC-C-CEEEEechhhcC--CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            32 3 999999999988  6677889999999999999999885

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.46  E-value=1.1e-12  Score=108.73  Aligned_cols=119  Identities=13%  Similarity=-0.025  Sum_probs=90.6

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-cccccccC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKVLA  161 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~  161 (224)
                      ++.+|||+| |+|.++..++.... .+++++|+|+.+++.|++++.        ..++. +++++++|+.+ ++..    
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~--------~~g~~-~v~~~~~D~~~~l~~~----  237 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAAN--------EIGYE-DIEIFTFDLRKPLPDY----  237 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHH--------HHTCC-CEEEECCCTTSCCCTT----
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--------HcCCC-CEEEEEChhhhhchhh----
Confidence            578999999 99999999876654 699999999999999999976        22334 69999999987 4320    


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCe-EEEEEeCC----h---HHHHHHhh-hccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPD----A---NVIIKKLR-EEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG-~li~~~~~----~---~~~~~~~~-~~gf  221 (224)
                      ..+.||+|+++..++.     .....++.++.++|+||| .+++++..    .   ..+.+.+. +.||
T Consensus       238 ~~~~fD~Vi~~~p~~~-----~~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  301 (373)
T 2qm3_A          238 ALHKFDTFITDPPETL-----EAIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNV  301 (373)
T ss_dssp             TSSCBSEEEECCCSSH-----HHHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCC
T ss_pred             ccCCccEEEECCCCch-----HHHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCc
Confidence            1368999999876553     235889999999999999 44665543    2   44555665 5665

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.46  E-value=3.8e-13  Score=107.12  Aligned_cols=116  Identities=15%  Similarity=0.148  Sum_probs=84.8

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..+.+|||||||+|..+..+++. ...++++||+++.+++.|++++...      ...+ ..+++++++|+.+....   
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~------~~~~~~~rv~v~~~D~~~~l~~---  144 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI------AGKLDDPRVDVQVDDGFMHIAK---  144 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHH------HTTTTSTTEEEEESCSHHHHHT---
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhh------ccccCCCceEEEECcHHHHHhh---
Confidence            46789999999999999998865 4579999999999999999987410      0011 45799999998764211   


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                       ..+.||+|++...........-....+++.+.+.|+|||++++...+
T Consensus       145 -~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          145 -SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             -CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             -CCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence             25789999996543221000001257899999999999999998644

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.46  E-value=1.6e-13  Score=101.87  Aligned_cols=108  Identities=16%  Similarity=0.210  Sum_probs=86.6

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...++.+|||+|||.               +++|+|+.|++.|+++..            . ++.+.++|+.+++...  
T Consensus         9 g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~------------~-~~~~~~~d~~~~~~~~--   58 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG------------N-EGRVSVENIKQLLQSA--   58 (176)
T ss_dssp             TCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT------------T-TSEEEEEEGGGGGGGC--
T ss_pred             CCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc------------c-CcEEEEechhcCcccc--
Confidence            356889999999996               239999999999998865            1 3889999998765411  


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC------------hHHHHHHhhhccc
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD------------ANVIIKKLREEHF  221 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~------------~~~~~~~~~~~gf  221 (224)
                      .++++||+|++..+++|+.   .+...++++++++|||||+|++..+.            ...+...++++||
T Consensus        59 ~~~~~fD~V~~~~~l~~~~---~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           59 HKESSFDIILSGLVPGSTT---LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             CCSSCEEEEEECCSTTCCC---CCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             CCCCCEeEEEECChhhhcc---cCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence            0367899999999999861   23578999999999999999997542            4578889999998

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.45  E-value=3e-13  Score=105.02  Aligned_cols=109  Identities=14%  Similarity=0.108  Sum_probs=83.6

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++.+|||||||+|..+..++...  ..+++++|+++.+++.|++++.        ..++..++.++++|+.+... ..
T Consensus        70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~--------~~g~~~~i~~~~~d~~~~l~-~l  140 (232)
T 3cbg_A           70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ--------KAGVAEKISLRLGPALATLE-QL  140 (232)
T ss_dssp             HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH--------HHTCGGGEEEEESCHHHHHH-HH
T ss_pred             hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEEcCHHHHHH-HH
Confidence            3567899999999999999988653  4689999999999999999875        23444568999999754311 01


Q ss_pred             cCCC--CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          160 LADD--APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       160 ~~~~--~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ....  ++||+|++....       .....++..+.++|+|||++++..
T Consensus       141 ~~~~~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          141 TQGKPLPEFDLIFIDADK-------RNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             HTSSSCCCEEEEEECSCG-------GGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             HhcCCCCCcCEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence            0012  789999987542       456789999999999999999863

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.45  E-value=4.6e-12  Score=99.48  Aligned_cols=131  Identities=8%  Similarity=0.092  Sum_probs=83.1

Q ss_pred             CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ++.+|||+|||+|.++..++.. ...+++|+|+|+.+++.|++++.        ..++..+++++++|+.+.-.......
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~~~~~~~~~~  136 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE--------QNNLSDLIKVVKVPQKTLLMDALKEE  136 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH--------HTTCTTTEEEEECCTTCSSTTTSTTC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH--------HcCCCccEEEEEcchhhhhhhhhhcc
Confidence            5679999999999999888764 34689999999999999999976        23444569999999765211000001


Q ss_pred             -CCCeeEEEEcccccccc-C--C--------HHHHHHHH--------------------HHHHhhccCCeEEEEEeC---
Q 027388          163 -DAPFDICSCQFAMHYSW-S--T--------EARARRAL--------------------ANVSALLRPGGTFIGTMP---  207 (224)
Q Consensus       163 -~~~~D~i~~~~~l~~~~-~--~--------~~~~~~~l--------------------~~~~~~lk~gG~li~~~~---  207 (224)
                       .+.||+|+++..++... .  .        ......++                    ....+.++++|+++....   
T Consensus       137 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~  216 (254)
T 2h00_A          137 SEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKC  216 (254)
T ss_dssp             CSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTT
T ss_pred             cCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChh
Confidence             25899999986544321 0  0        00011222                    233445666666665432   


Q ss_pred             ChHHHHHHhhhcccc
Q 027388          208 DANVIIKKLREEHFC  222 (224)
Q Consensus       208 ~~~~~~~~~~~~gf~  222 (224)
                      ....+.+.++++||.
T Consensus       217 ~~~~~~~~l~~~Gf~  231 (254)
T 2h00_A          217 SLAPLKEELRIQGVP  231 (254)
T ss_dssp             SHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHcCCC
Confidence            225677888899985

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.45  E-value=7.5e-13  Score=106.82  Aligned_cols=114  Identities=18%  Similarity=0.159  Sum_probs=81.9

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..+.+|||||||+|..+..+++.. ..++++||+++.+++.|++++...      ...+ ..+++++++|+.+....   
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~------~~~~~~~rv~v~~~Da~~~l~~---  164 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGM------AIGYSSSKLTLHVGDGFEFMKQ---  164 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH------HGGGGCTTEEEEESCHHHHHHT---
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHh------hcccCCCcEEEEECcHHHHHhh---
Confidence            467899999999999999988653 468999999999999999987510      0112 45689999998763211   


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                       ..++||+|++................+++.+.++|+|||+|++..
T Consensus       165 -~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          165 -NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             -CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence             357899999865433210000123578999999999999999876

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.45  E-value=4e-13  Score=106.84  Aligned_cols=103  Identities=17%  Similarity=0.100  Sum_probs=83.5

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++.+|||+|||+|.++..++.. ...+++++|+++.+++.|++++..        .++. ++.++++|+.+. .    
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~--------n~l~-~~~~~~~d~~~~-~----  182 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL--------NKLN-NVIPILADNRDV-E----  182 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH--------TTCS-SEEEEESCGGGC-C----
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCC-CEEEEECChHHc-C----
Confidence            467889999999999999999865 356899999999999999998863        2232 488999999876 2    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                       ..+.||+|++....        ....++..+.+.|+|||+++++..
T Consensus       183 -~~~~~D~Vi~d~p~--------~~~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          183 -LKDVADRVIMGYVH--------KTHKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             -CTTCEEEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             -ccCCceEEEECCcc--------cHHHHHHHHHHHcCCCCEEEEEEc
Confidence             24689999987653        345688899999999999998744

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.45  E-value=1.1e-13  Score=109.55  Aligned_cols=109  Identities=13%  Similarity=0.083  Sum_probs=74.7

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEE--ecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI--CGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~--~~d~~~~~~~~  158 (224)
                      ...++.+|||||||+|.++..+++.  .+|+|||+++ |+..+.....       .......++.++  ++|+.+++   
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~-------~~~~~~~~v~~~~~~~D~~~l~---  137 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPR-------ITESYGWNIVKFKSRVDIHTLP---  137 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCC-------CCCBTTGGGEEEECSCCTTTSC---
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhh-------hhhccCCCeEEEecccCHhHCC---
Confidence            3457889999999999999988765  7999999998 5322211100       001122258888  88988753   


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHH---HHHHHHHHhhccCCe--EEEEEeC
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARA---RRALANVSALLRPGG--TFIGTMP  207 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~---~~~l~~~~~~lk~gG--~li~~~~  207 (224)
                          +++||+|+|..+ ++......+.   ..++..+.++|+|||  .|++.+.
T Consensus       138 ----~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~  186 (265)
T 2oxt_A          138 ----VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL  186 (265)
T ss_dssp             ----CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             ----CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence                468999999876 4321111111   237899999999999  9998764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.45  E-value=5.1e-13  Score=106.82  Aligned_cols=114  Identities=14%  Similarity=0.160  Sum_probs=85.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~  160 (224)
                      .++.+|||||||+|..+..+++.. ..+++++|+++.+++.|++++....      ..+ ..+++++++|+.+....   
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~------~~~~~~~v~~~~~D~~~~l~~---  147 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS------CGYEDKRVNVFIEDASKFLEN---  147 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS------GGGGSTTEEEEESCHHHHHHH---
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhc------cccCCCcEEEEECChHHHHHh---
Confidence            467899999999999999987653 4689999999999999999876210      011 35689999998764321   


Q ss_pred             CCCCCeeEEEEccccccccCCHHHH--HHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARA--RRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~--~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                       ..+.||+|++.....+.  .....  ..+++.+.++|+|||++++...+
T Consensus       148 -~~~~fD~Ii~d~~~~~~--~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          148 -VTNTYDVIIVDSSDPIG--PAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             -CCSCEEEEEEECCCTTT--GGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             -CCCCceEEEEcCCCCCC--cchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence             25789999986543321  11222  68999999999999999998653

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.45  E-value=4.9e-13  Score=104.21  Aligned_cols=110  Identities=11%  Similarity=0.053  Sum_probs=84.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++++|||||||+|..+..++...  ..+++++|+++.+++.|++++.        ..++..+++++++|+.+......
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~--------~~g~~~~i~~~~gda~~~l~~l~  139 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIR--------KAGVEHKINFIESDAMLALDNLL  139 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHH--------HTTCGGGEEEEESCHHHHHHHHH
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEEcCHHHHHHHHH
Confidence            3577899999999999999988652  5799999999999999999886        23445569999999875421000


Q ss_pred             c--CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          160 L--ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       160 ~--~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      .  ...++||+|++....       .....+++.+.++|+|||++++..
T Consensus       140 ~~~~~~~~fD~I~~d~~~-------~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          140 QGQESEGSYDFGFVDADK-------PNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             HSTTCTTCEEEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             hccCCCCCcCEEEECCch-------HHHHHHHHHHHHhcCCCeEEEEec
Confidence            0  014689999987432       456789999999999999999864

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.44  E-value=3.9e-13  Score=103.89  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=83.5

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++.+|||||||+|..+..++...  ..+++++|+++.+++.|++++.        ..++..++.++++|+.+.... .
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~--------~~g~~~~i~~~~~d~~~~~~~-~  137 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWR--------QAEAEHKIDLRLKPALETLDE-L  137 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHH--------HTTCTTTEEEEESCHHHHHHH-H
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HCCCCCeEEEEEcCHHHHHHH-H
Confidence            4578899999999999999988642  5689999999999999999876        234445799999998654210 0


Q ss_pred             cCC--CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LAD--DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~--~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ...  .++||+|++....       .....++..+.++|+|||++++.
T Consensus       138 ~~~~~~~~~D~v~~d~~~-------~~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          138 LAAGEAGTFDVAVVDADK-------ENCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             HHTTCTTCEEEEEECSCS-------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhcCCCCCccEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEE
Confidence            001  1689999987542       34578899999999999999985

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.43  E-value=1.5e-13  Score=109.41  Aligned_cols=108  Identities=13%  Similarity=0.081  Sum_probs=74.4

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEE--eccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI--CGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~--~~d~~~~~~~~~  159 (224)
                      ..++.+|||+|||+|.++..+++.  .+|+|||+|+ |+..++.....       ......++.++  ++|+.+++    
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~-------~~~~~~~v~~~~~~~D~~~l~----  145 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRL-------VETFGWNLITFKSKVDVTKME----  145 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCC-------CCCTTGGGEEEECSCCGGGCC----
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhh-------hhhcCCCeEEEeccCcHhhCC----
Confidence            456789999999999999988765  6999999998 54332211100       01122368888  88987753    


Q ss_pred             cCCCCCeeEEEEccccccccCCHHH-H--HHHHHHHHhhccCCe--EEEEEeC
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEAR-A--RRALANVSALLRPGG--TFIGTMP  207 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~-~--~~~l~~~~~~lk~gG--~li~~~~  207 (224)
                         .++||+|+|..+ ++......+ .  ..++..+.++|+|||  .|++.+.
T Consensus       146 ---~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~  194 (276)
T 2wa2_A          146 ---PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL  194 (276)
T ss_dssp             ---CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             ---CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence               468999999877 432111111 1  137899999999999  9988654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.43  E-value=6.6e-13  Score=109.34  Aligned_cols=99  Identities=13%  Similarity=0.100  Sum_probs=80.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++.               .+++++.+|+.+ +.    
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~v~~~~~d~~~-~~----  244 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS---------------NNLTYVGGDMFT-SI----  244 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB---------------TTEEEEECCTTT-CC----
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC---------------CCcEEEeccccC-CC----
Confidence            4567899999999999999988653 458999999 8888776531               138999999865 33    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccC---CeEEEEEe
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP---GGTFIGTM  206 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~---gG~li~~~  206 (224)
                       +  .||+|++..++|++  +..+...++++++++|+|   ||+|++..
T Consensus       245 -p--~~D~v~~~~~lh~~--~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          245 -P--NADAVLLKYILHNW--TDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             -C--CCSEEEEESCGGGS--CHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             -C--CccEEEeehhhccC--CHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence             2  39999999999998  555666999999999999   99988863

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.43  E-value=1.6e-12  Score=104.60  Aligned_cols=115  Identities=17%  Similarity=0.129  Sum_probs=82.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..+.+|||||||+|..+..+++. ...+++++|+++.+++.|++++...      ...+ ..+++++++|+.+....   
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~------~~~~~~~~v~~~~~D~~~~l~~---  159 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQT------SCGFDDPRAEIVIANGAEYVRK---  159 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHH------HGGGGCTTEEEEESCHHHHGGG---
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhh------ccccCCCceEEEECcHHHHHhh---
Confidence            45689999999999999998865 4578999999999999999987410      0112 35699999998664211   


Q ss_pred             CCCCCeeEEEEccccccccCCHH--HHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEA--RARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~--~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                       ..+.||+|++...-.++ ....  ....+++.+.++|+|||++++.+.+
T Consensus       160 -~~~~fD~Ii~d~~~~~~-~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          160 -FKNEFDVIIIDSTDPTA-GQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             -CSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             -CCCCceEEEEcCCCccc-CchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence             35689999986432211 0001  1268899999999999999998654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.43  E-value=1e-12  Score=106.39  Aligned_cols=113  Identities=19%  Similarity=0.188  Sum_probs=81.5

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..+.+|||||||+|..+..+++. ...+++++|+++.+++.|++++....      .++ ..+++++++|+.+....   
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~------~~~~~~rv~~~~~D~~~~l~~---  177 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS------CGFSHPKLDLFCGDGFEFLKN---  177 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTS------GGGGCTTEEEECSCHHHHHHH---
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhc------cccCCCCEEEEEChHHHHHHh---
Confidence            46789999999999999998765 34689999999999999999886210      012 45689999998764211   


Q ss_pred             CCCCCeeEEEEccccccccCCHHHH--HHHHHHHHhhccCCeEEEEEeC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARA--RRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~--~~~l~~~~~~lk~gG~li~~~~  207 (224)
                       ..+.||+|++...-...  .....  ..+++.+.++|+|||++++...
T Consensus       178 -~~~~fD~Ii~d~~~~~~--~~~~l~t~~~l~~~~~~LkpgG~lv~~~~  223 (314)
T 2b2c_A          178 -HKNEFDVIITDSSDPVG--PAESLFGQSYYELLRDALKEDGILSSQGE  223 (314)
T ss_dssp             -CTTCEEEEEECCC---------------HHHHHHHHEEEEEEEEEECC
T ss_pred             -cCCCceEEEEcCCCCCC--cchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence             35789999986542211  11122  6899999999999999999863

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.43  E-value=4.9e-13  Score=107.00  Aligned_cols=113  Identities=20%  Similarity=0.333  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      .+..++......++.+|||||||+|.++..++.. ..+++++|+|+.+++.+++++..        .+...+++++++|+
T Consensus        16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~--------~~~~~~v~~~~~D~   86 (285)
T 1zq9_A           16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQG--------TPVASKLQVLVGDV   86 (285)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTT--------STTGGGEEEEESCT
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHh--------cCCCCceEEEEcce
Confidence            3444555555667889999999999999999865 45999999999999999998752        12234689999999


Q ss_pred             cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHH--------------HH--HhhccCCeEEE
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA--------------NV--SALLRPGGTFI  203 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~--------------~~--~~~lk~gG~li  203 (224)
                      .+.+.       ..||+|+++..+++.   .+....++.              ++  +++++|||.++
T Consensus        87 ~~~~~-------~~fD~vv~nlpy~~~---~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           87 LKTDL-------PFFDTCVANLPYQIS---SPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             TTSCC-------CCCSEEEEECCGGGH---HHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             ecccc-------hhhcEEEEecCcccc---hHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            87754       379999998776653   233333432              22  36889999764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.43  E-value=1.1e-12  Score=98.73  Aligned_cols=116  Identities=18%  Similarity=0.176  Sum_probs=78.2

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcC----------CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEE-ecc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKI----------GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI-CGD  150 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~----------~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~-~~d  150 (224)
                      ..++.+|||+|||+|.++..++....          .+++++|+|+..        .            ..+++++ .+|
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~------------~~~~~~~~~~d   79 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------P------------LEGATFLCPAD   79 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------C------------CTTCEEECSCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------c------------CCCCeEEEecc
Confidence            45788999999999999999887632          689999999831        0            1247788 888


Q ss_pred             ccccccccc---cCCCCCeeEEEEccccccccCCHHHH-------HHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhh
Q 027388          151 CYEVHLDKV---LADDAPFDICSCQFAMHYSWSTEARA-------RRALANVSALLRPGGTFIGTMPDA---NVIIKKLR  217 (224)
Q Consensus       151 ~~~~~~~~~---~~~~~~~D~i~~~~~l~~~~~~~~~~-------~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~  217 (224)
                      +........   ..+.++||+|++..++++......+.       ..++.++.++|+|||.|++.+...   ..+...+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~  159 (196)
T 2nyu_A           80 VTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLT  159 (196)
T ss_dssp             TTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHH
Confidence            765432100   00235899999976544321111222       578999999999999999986643   34444443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.43  E-value=1.7e-12  Score=108.49  Aligned_cols=116  Identities=14%  Similarity=0.093  Sum_probs=87.9

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .++.+|||+|||+|.++..++..+..+++++|+|+.+++.|++++..        .++ ..+++++++|+.+.... ...
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~--------ngl~~~~v~~~~~D~~~~~~~-~~~  289 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL--------NKLDLSKAEFVRDDVFKLLRT-YRD  289 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--------TTCCGGGEEEEESCHHHHHHH-HHH
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCccceEEEECCHHHHHHH-HHh
Confidence            57889999999999999999876667999999999999999999862        333 33689999998765321 000


Q ss_pred             CCCCeeEEEEccccc-----cccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          162 DDAPFDICSCQFAMH-----YSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~-----~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ....||+|++.....     .+.........++..+.+.|+|||++++++.
T Consensus       290 ~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             TTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            146899999874321     1111225778899999999999999998754

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.43  E-value=7.3e-13  Score=107.66  Aligned_cols=114  Identities=13%  Similarity=0.151  Sum_probs=84.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..+.+|||||||+|..+..+++. ...+++++|+|+.+++.|++++....      ..+ ..+++++++|+.+....   
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~------~~~~~~~v~~~~~D~~~~l~~---  185 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS------CGYEDKRVNVFIEDASKFLEN---  185 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS------GGGGSTTEEEEESCHHHHHHH---
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc------cccCCCcEEEEEccHHHHHhh---
Confidence            46789999999999999998865 35689999999999999999976210      112 35699999998764211   


Q ss_pred             CCCCCeeEEEEccccccccCCHHHH--HHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARA--RRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~--~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                       ..+.||+|++...-.+.  .....  ..+++.+.+.|+|||++++...+
T Consensus       186 -~~~~fDvIi~d~~~p~~--~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          186 -VTNTYDVIIVDSSDPIG--PAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             -CCSCEEEEEEECCCSSS--GGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             -cCCCceEEEECCcCCCC--cchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence             24789999986532111  11111  68999999999999999997543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.43  E-value=9.1e-13  Score=107.53  Aligned_cols=115  Identities=17%  Similarity=0.187  Sum_probs=83.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..+.+|||||||+|..+..+++.. ..++++||+|+.+++.|++++...      ..++ ..+++++++|+.+.... . 
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~------~~gl~~~rv~~~~~D~~~~l~~-~-  190 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDV------AIGYEDPRVNLVIGDGVAFLKN-A-  190 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH------HGGGGSTTEEEEESCHHHHHHT-S-
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhh------ccccCCCcEEEEECCHHHHHHh-c-
Confidence            467899999999999999988653 468999999999999999987510      0012 34699999998764210 0 


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                       ..++||+|++.....+..........+++.+.++|+|||+|++..
T Consensus       191 -~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          191 -AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             -CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             -cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence             246899999865421110000114689999999999999999963

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.42  E-value=7.4e-13  Score=107.39  Aligned_cols=114  Identities=18%  Similarity=0.140  Sum_probs=84.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCccccccccc-C-CCCeeEEeccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-F-SFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~-~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..+.+|||||||+|..+..+++. ...++++||+++.+++.|++++...      ..+ + ..+++++++|+.+....  
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~------~~~~~~~~~v~~~~~D~~~~l~~--  147 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEW------HQGAFDDPRAVLVIDDARAYLER--  147 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHH------HTTGGGCTTEEEEESCHHHHHHH--
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhh------ccccccCCceEEEEchHHHHHHh--
Confidence            46789999999999999998865 3568999999999999999987510      001 1 35699999998764211  


Q ss_pred             cCCCCCeeEEEEcccccccc-CCHHH--HHHHHHHHHhhccCCeEEEEEe
Q 027388          160 LADDAPFDICSCQFAMHYSW-STEAR--ARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~-~~~~~--~~~~l~~~~~~lk~gG~li~~~  206 (224)
                        ..++||+|++....++.. .....  ...+++.+.++|+|||++++..
T Consensus       148 --~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          148 --TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             --CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence              357899999986654300 01111  3689999999999999999874

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.42  E-value=3.6e-12  Score=101.18  Aligned_cols=102  Identities=10%  Similarity=0.033  Sum_probs=84.5

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.+++.++..+..+|+++|+++.+++.+++++.        ..++..+++++++|+.++..     
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~--------~N~v~~~v~~~~~D~~~~~~-----  189 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIH--------LNKVEDRMSAYNMDNRDFPG-----  189 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHH--------HTTCTTTEEEECSCTTTCCC-----
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEeCcHHHhcc-----
Confidence            46789999999999999999987777799999999999999999987        45667789999999987753     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       .+.||.|+++....        ...++..+.++|++||++.+.
T Consensus       190 -~~~~D~Vi~~~p~~--------~~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          190 -ENIADRILMGYVVR--------THEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             -CSCEEEEEECCCSS--------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             -ccCCCEEEECCCCc--------HHHHHHHHHHHcCCCCEEEEE
Confidence             57899999765321        235677788999999998763

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.42  E-value=6e-13  Score=111.28  Aligned_cols=117  Identities=20%  Similarity=0.174  Sum_probs=87.9

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++..+..+++++|+|+.+++.|++++..        .++..++.++++|+.+.... ....
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~--------n~~~~~v~~~~~d~~~~~~~-~~~~  286 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKL--------NGVEDRMKFIVGSAFEEMEK-LQKK  286 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--------TTCGGGEEEEESCHHHHHHH-HHHT
T ss_pred             hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCCccceEEECCHHHHHHH-HHhh
Confidence            37889999999999999999866566999999999999999999872        33443689999998765321 0002


Q ss_pred             CCCeeEEEEccccccc-----cCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          163 DAPFDICSCQFAMHYS-----WSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~-----~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ...||+|++.......     +........++..+.++|+|||.+++.+.+
T Consensus       287 ~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          287 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            4689999986432110     001256788999999999999999888654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.41  E-value=1.8e-12  Score=97.65  Aligned_cols=115  Identities=19%  Similarity=0.196  Sum_probs=78.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc-
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL-  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-  160 (224)
                      ..++.+|||+|||+|.++..+++. ...|+|+|+++..        .            ..++.++++|+.+....... 
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~--------~------------~~~v~~~~~D~~~~~~~~~~~   81 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME--------E------------IAGVRFIRCDIFKETIFDDID   81 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC--------C------------CTTCEEEECCTTSSSHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc--------c------------CCCeEEEEccccCHHHHHHHH
Confidence            357889999999999999998866 6799999999731        1            22589999998875421100 


Q ss_pred             --CC---CCCeeEEEEcccccccc-------CCHHHHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhh
Q 027388          161 --AD---DAPFDICSCQFAMHYSW-------STEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLR  217 (224)
Q Consensus       161 --~~---~~~~D~i~~~~~l~~~~-------~~~~~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~  217 (224)
                        ..   .+.||+|++.......-       ........++..+.++|||||.|++.+...   ..+...++
T Consensus        82 ~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~  153 (191)
T 3dou_A           82 RALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWR  153 (191)
T ss_dssp             HHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHG
T ss_pred             HHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHH
Confidence              00   14899999976432110       011224678899999999999999876533   34555553

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.38  E-value=8.7e-13  Score=106.42  Aligned_cols=106  Identities=20%  Similarity=0.227  Sum_probs=73.2

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeC----ChhHHHHHHHhccCCcccccccccC-CCCeeEEec-cccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI----AEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICG-DCYEVH  155 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~----s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~-d~~~~~  155 (224)
                      ..++.+|||||||+|.++..+++.  +.|+|||+    ++.+++.+  ...          .. ..++.++++ |+..++
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~--~~~----------~~~~~~v~~~~~~D~~~l~  145 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPI--PMS----------TYGWNLVRLQSGVDVFFIP  145 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCC--CCC----------STTGGGEEEECSCCTTTSC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHH--Hhh----------hcCCCCeEEEeccccccCC
Confidence            456789999999999999988765  58999999    55443211  011          11 235888888 876653


Q ss_pred             cccccCCCCCeeEEEEccccc---cccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          156 LDKVLADDAPFDICSCQFAMH---YSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~---~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                             ..+||+|+|..+++   +.. .......+|..+.++|||||.|++.+...
T Consensus       146 -------~~~fD~V~sd~~~~~g~~~~-d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          146 -------PERCDTLLCDIGESSPNPTV-EAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             -------CCCCSEEEECCCCCCSSHHH-HHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             -------cCCCCEEEECCccccCcchh-hHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence                   36899999987653   210 00111257889999999999999986644

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.38  E-value=2.1e-12  Score=99.36  Aligned_cols=101  Identities=14%  Similarity=0.042  Sum_probs=80.8

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||||||+|-++..+.  ....|+++|+++.+++.+++++..+          +.+..+..+|....+.      
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~----------g~~~~~~v~D~~~~~~------  165 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREK----------DWDFTFALQDVLCAPP------  165 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHT----------TCEEEEEECCTTTSCC------
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhc----------CCCceEEEeecccCCC------
Confidence            468899999999999998876  6679999999999999999997622          3457899999877664      


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      .++||+|++.-++|++  . .......-++...|+++|+++-
T Consensus       166 ~~~~DvvLllk~lh~L--E-~q~~~~~~~ll~aL~~~~vvVs  204 (253)
T 3frh_A          166 AEAGDLALIFKLLPLL--E-REQAGSAMALLQSLNTPRMAVS  204 (253)
T ss_dssp             CCBCSEEEEESCHHHH--H-HHSTTHHHHHHHHCBCSEEEEE
T ss_pred             CCCcchHHHHHHHHHh--h-hhchhhHHHHHHHhcCCCEEEE
Confidence            5799999999999987  2 2223344488889999877663

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.37  E-value=6.3e-13  Score=103.22  Aligned_cols=99  Identities=11%  Similarity=0.079  Sum_probs=66.5

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEE-eccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI-CGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~  162 (224)
                      .+.+|||||||+|.++..+++.+..+|+|+|+|+.|++.++++...              +... ..++........  .
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~--------------~~~~~~~~~~~~~~~~~--~  100 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER--------------VVVMEQFNFRNAVLADF--E  100 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT--------------EEEECSCCGGGCCGGGC--C
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc--------------ccccccceEEEeCHhHc--C
Confidence            4679999999999999998877556999999999999998776441              1111 111111110000  1


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ...+|.+.+..++..+       ..++.++.++|||||.+++.
T Consensus       101 ~~~~d~~~~D~v~~~l-------~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          101 QGRPSFTSIDVSFISL-------DLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             SCCCSEEEECCSSSCG-------GGTHHHHHHHSCTTCEEEEE
T ss_pred             cCCCCEEEEEEEhhhH-------HHHHHHHHHhccCCCEEEEE
Confidence            1234555555544332       56899999999999998886

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.37  E-value=6.1e-12  Score=106.81  Aligned_cols=127  Identities=17%  Similarity=0.155  Sum_probs=89.5

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+|||+|||+|..+..++...  .+.++++|+|+.+++.+++++..        .++ .++.++++|+...+.. 
T Consensus       256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~--------~g~-~~v~~~~~D~~~~~~~-  325 (450)
T 2yxl_A          256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKR--------MGI-KIVKPLVKDARKAPEI-  325 (450)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH--------TTC-CSEEEECSCTTCCSSS-
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH--------cCC-CcEEEEEcChhhcchh-
Confidence            45678899999999999999988642  36899999999999999998762        222 2589999998776521 


Q ss_pred             ccCCCCCeeEEEEc------cccccccC-----CH-------HHHHHHHHHHHhhccCCeEEEEEeCC------hHHHHH
Q 027388          159 VLADDAPFDICSCQ------FAMHYSWS-----TE-------ARARRALANVSALLRPGGTFIGTMPD------ANVIIK  214 (224)
Q Consensus       159 ~~~~~~~~D~i~~~------~~l~~~~~-----~~-------~~~~~~l~~~~~~lk~gG~li~~~~~------~~~~~~  214 (224)
                        ...+.||+|++.      +++....+     +.       ..+..++..+.++|||||.|++++..      ...+..
T Consensus       326 --~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~  403 (450)
T 2yxl_A          326 --IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRW  403 (450)
T ss_dssp             --SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHH
T ss_pred             --hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHH
Confidence              023689999963      22222100     00       11267899999999999999987652      234445


Q ss_pred             Hhhhc
Q 027388          215 KLREE  219 (224)
Q Consensus       215 ~~~~~  219 (224)
                      .+.+.
T Consensus       404 ~l~~~  408 (450)
T 2yxl_A          404 FLNVH  408 (450)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            55554

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.36  E-value=1.1e-12  Score=109.25  Aligned_cols=114  Identities=13%  Similarity=0.165  Sum_probs=85.7

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ++.+|||+|||+|.++..++.. ..+++++|+|+.+++.|++++..        .++.. +.++++|+.+.... .....
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~--------n~~~~-~~~~~~d~~~~~~~-~~~~~  277 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARL--------NGLGN-VRVLEANAFDLLRR-LEKEG  277 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHH--------TTCTT-EEEEESCHHHHHHH-HHHTT
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHH--------cCCCC-ceEEECCHHHHHHH-HHhcC
Confidence            6789999999999999999876 66899999999999999999862        23333 89999998765321 00024


Q ss_pred             CCeeEEEEcccccc-----ccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          164 APFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       164 ~~~D~i~~~~~l~~-----~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ..||+|++......     +.........++..+.++|+|||+|++++..
T Consensus       278 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          278 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            68999998643211     0011256788999999999999999998653

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.35  E-value=3.2e-12  Score=105.46  Aligned_cols=98  Identities=13%  Similarity=0.143  Sum_probs=79.1

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++.               .+++++.+|+.+ +.    
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~v~~~~~d~~~-~~----  249 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN---------------ENLNFVGGDMFK-SI----  249 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC---------------SSEEEEECCTTT-CC----
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC---------------CCcEEEeCccCC-CC----
Confidence            3467899999999999999988764 347999999 6777655431               238999999876 43    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccC---CeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP---GGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~---gG~li~~  205 (224)
                       +  .||+|++..++|++  +.++...+++++.++|+|   ||+|++.
T Consensus       250 -~--~~D~v~~~~vlh~~--~d~~~~~~l~~~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          250 -P--SADAVLLKWVLHDW--NDEQSLKILKNSKEAISHKGKDGKVIII  292 (358)
T ss_dssp             -C--CCSEEEEESCGGGS--CHHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred             -C--CceEEEEcccccCC--CHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence             2  49999999999988  555667999999999999   9998885

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.35  E-value=6.2e-12  Score=104.74  Aligned_cols=110  Identities=14%  Similarity=0.080  Sum_probs=80.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++.+|||+|||+|.++..++..+. .|+++|+|+.+++.|++++..        .++.  ..+.++|+.+....    .
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~--------ng~~--~~~~~~D~~~~l~~----~  277 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALR--------LGLR--VDIRHGEALPTLRG----L  277 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHH--------HTCC--CEEEESCHHHHHHT----C
T ss_pred             cCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHH--------hCCC--CcEEEccHHHHHHH----h
Confidence            4588999999999999999986654 599999999999999999862        2333  35668888764321    1


Q ss_pred             CCCeeEEEEcccccc-----ccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          163 DAPFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~-----~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .+.||+|++......     +.....+...++..+.++|+|||.|++.+.
T Consensus       278 ~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          278 EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            234999998654211     001124667899999999999999996654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.35  E-value=9.1e-12  Score=105.16  Aligned_cols=127  Identities=18%  Similarity=0.183  Sum_probs=89.9

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      +...++.+|||+|||+|..+..++.... ..++++|+++.+++.+++++..        .  +.++.++++|+...+.. 
T Consensus       242 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~--------~--g~~~~~~~~D~~~~~~~-  310 (429)
T 1sqg_A          242 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR--------L--GMKATVKQGDGRYPSQW-  310 (429)
T ss_dssp             HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHH--------T--TCCCEEEECCTTCTHHH-
T ss_pred             cCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHH--------c--CCCeEEEeCchhhchhh-
Confidence            3456788999999999999999887543 6999999999999999998762        1  22478899998776510 


Q ss_pred             ccCCCCCeeEEEEcc------ccccccC-----CH-------HHHHHHHHHHHhhccCCeEEEEEeC------ChHHHHH
Q 027388          159 VLADDAPFDICSCQF------AMHYSWS-----TE-------ARARRALANVSALLRPGGTFIGTMP------DANVIIK  214 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~------~l~~~~~-----~~-------~~~~~~l~~~~~~lk~gG~li~~~~------~~~~~~~  214 (224)
                       . ..+.||+|++..      ++.+..+     +.       ..+..++..+.+.|||||+|++++.      |...+..
T Consensus       311 -~-~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~  388 (429)
T 1sqg_A          311 -C-GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKA  388 (429)
T ss_dssp             -H-TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHH
T ss_pred             -c-ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHH
Confidence             0 346899999632      2222100     00       1235889999999999999999864      3334555


Q ss_pred             Hhhhc
Q 027388          215 KLREE  219 (224)
Q Consensus       215 ~~~~~  219 (224)
                      .+.+.
T Consensus       389 ~l~~~  393 (429)
T 1sqg_A          389 FLQRT  393 (429)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            55543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.34  E-value=8.1e-12  Score=102.20  Aligned_cols=112  Identities=21%  Similarity=0.186  Sum_probs=87.5

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++.. +. ...+++++|+|+.+++.+++++..        .++..++.++++|+.+..      
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~--------n~l~~~v~~~~~D~~~~~------  256 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKL--------NKLEHKIIPILSDVREVD------  256 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHH--------TTCTTTEEEEESCGGGCC------
T ss_pred             cCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEECChHHhc------
Confidence            35788999999999999999 76 677999999999999999999872        344456999999987653      


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC--ChHHHHHHhhhc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP--DANVIIKKLREE  219 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~--~~~~~~~~~~~~  219 (224)
                        ..||+|++.....        ...++..+.++|+|||++++...  ....+.+.+.+.
T Consensus       257 --~~fD~Vi~dpP~~--------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~l~~~  306 (336)
T 2yx1_A          257 --VKGNRVIMNLPKF--------AHKFIDKALDIVEEGGVIHYYTIGKDFDKAIKLFEKK  306 (336)
T ss_dssp             --CCEEEEEECCTTT--------GGGGHHHHHHHEEEEEEEEEEEEESSSHHHHHHHHHH
T ss_pred             --CCCcEEEECCcHh--------HHHHHHHHHHHcCCCCEEEEEEeecCchHHHHHHHHh
Confidence              6799999864321        12688899999999999887533  345566666655

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.34  E-value=5.5e-12  Score=106.68  Aligned_cols=128  Identities=17%  Similarity=0.112  Sum_probs=91.6

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      +...++.+|||+|||+|..+..++..  ..+.|+++|+|+.+++.+++++..        .++. ++.++++|+..+...
T Consensus       101 L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r--------~g~~-nv~v~~~Da~~l~~~  171 (456)
T 3m4x_A          101 AAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIER--------WGVS-NAIVTNHAPAELVPH  171 (456)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH--------HTCS-SEEEECCCHHHHHHH
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCC-ceEEEeCCHHHhhhh
Confidence            34567899999999999999998864  346899999999999999999862        2333 588999998776421


Q ss_pred             cccCCCCCeeEEEEccc---cccccCCH---------------HHHHHHHHHHHhhccCCeEEEEEeC------ChHHHH
Q 027388          158 KVLADDAPFDICSCQFA---MHYSWSTE---------------ARARRALANVSALLRPGGTFIGTMP------DANVII  213 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~---l~~~~~~~---------------~~~~~~l~~~~~~lk~gG~li~~~~------~~~~~~  213 (224)
                          ..+.||+|++.-.   ...+-...               ..+..++..+.++|||||+|+.+|.      |...+.
T Consensus       172 ----~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~  247 (456)
T 3m4x_A          172 ----FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIIS  247 (456)
T ss_dssp             ----HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHH
T ss_pred             ----ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHH
Confidence                2478999997431   11110000               1234789999999999999999765      444555


Q ss_pred             HHhhhcc
Q 027388          214 KKLREEH  220 (224)
Q Consensus       214 ~~~~~~g  220 (224)
                      ..+.+.+
T Consensus       248 ~~l~~~~  254 (456)
T 3m4x_A          248 WLVENYP  254 (456)
T ss_dssp             HHHHHSS
T ss_pred             HHHHhCC
Confidence            5555544

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.34  E-value=1.9e-12  Score=100.60  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=81.9

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+.+|||||||+|-++..+... ....|+++|+++.+++.++.++..          .+....+.+.|...-+      
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~----------~g~~~~~~v~D~~~~~------  194 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTR----------LNVPHRTNVADLLEDR------  194 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHH----------TTCCEEEEECCTTTSC------
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh----------cCCCceEEEeeecccC------
Confidence            55789999999999999988765 556899999999999999999862          2344788888876554      


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      +...||++++.-+++++  ........+ ++...|+++|+++-
T Consensus       195 p~~~~DvaL~lkti~~L--e~q~kg~g~-~ll~aL~~~~vvVS  234 (281)
T 3lcv_B          195 LDEPADVTLLLKTLPCL--ETQQRGSGW-EVIDIVNSPNIVVT  234 (281)
T ss_dssp             CCSCCSEEEETTCHHHH--HHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred             CCCCcchHHHHHHHHHh--hhhhhHHHH-HHHHHhCCCCEEEe
Confidence            36899999999999998  112222344 99999999998874

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.33  E-value=7.1e-12  Score=106.16  Aligned_cols=114  Identities=18%  Similarity=0.224  Sum_probs=84.4

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      +...++.+|||+|||+|..+..++..  ..+.|+++|+|+.+++.+++++.        ..++.  +.++++|+.++...
T Consensus        97 L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~--------r~G~~--v~~~~~Da~~l~~~  166 (464)
T 3m6w_A           97 LDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVE--------RWGAP--LAVTQAPPRALAEA  166 (464)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHH--------HHCCC--CEEECSCHHHHHHH
T ss_pred             cCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HcCCe--EEEEECCHHHhhhh
Confidence            34567899999999999999998865  34689999999999999999976        23333  88899998776421


Q ss_pred             cccCCCCCeeEEEEcc------ccccc------cCC------HHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          158 KVLADDAPFDICSCQF------AMHYS------WST------EARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~------~l~~~------~~~------~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                          ..+.||+|++.-      ++...      ++.      ...+..++..+.++|||||+|+++|.
T Consensus       167 ----~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC  230 (464)
T 3m6w_A          167 ----FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC  230 (464)
T ss_dssp             ----HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             ----ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                247899999631      11111      000      12247789999999999999999765

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.32  E-value=3.6e-12  Score=100.64  Aligned_cols=102  Identities=11%  Similarity=-0.054  Sum_probs=78.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ..+++|||||||+|..+..+++.. .+++++|+++.+++.|++.+....     ......+++++.+|..+..       
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~-----~~~~~~rv~~~~~D~~~~~-------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFH-----EVKNNKNFTHAKQLLDLDI-------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHH-----HHHTCTTEEEESSGGGSCC-------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhc-----cccCCCeEEEEechHHHHH-------
Confidence            456899999999999999888774 899999999999999998765200     0001346889999976542       


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                       ++||+|++...         ++..+++.+.+.|+|||++++...
T Consensus       138 -~~fD~Ii~d~~---------dp~~~~~~~~~~L~pgG~lv~~~~  172 (262)
T 2cmg_A          138 -KKYDLIFCLQE---------PDIHRIDGLKRMLKEDGVFISVAK  172 (262)
T ss_dssp             -CCEEEEEESSC---------CCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             -hhCCEEEECCC---------ChHHHHHHHHHhcCCCcEEEEEcC
Confidence             57999998731         122489999999999999998743

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.32  E-value=1.3e-11  Score=99.27  Aligned_cols=89  Identities=19%  Similarity=0.377  Sum_probs=65.8

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      ++..++..+...++.+|||||||+|.++..++.. ..+++|+|+++.+++.+++++..        .+. .+++++++|+
T Consensus        30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~--------~~~-~~v~~~~~D~   99 (299)
T 2h1r_A           30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLY--------EGY-NNLEVYEGDA   99 (299)
T ss_dssp             HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHH--------TTC-CCEEC----C
T ss_pred             HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHH--------cCC-CceEEEECch
Confidence            3444555555667889999999999999998754 56999999999999999998741        122 4689999999


Q ss_pred             cccccccccCCCCCeeEEEEcccccc
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHY  177 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~  177 (224)
                      .+++.       ..||+|+++...++
T Consensus       100 ~~~~~-------~~~D~Vv~n~py~~  118 (299)
T 2h1r_A          100 IKTVF-------PKFDVCTANIPYKI  118 (299)
T ss_dssp             CSSCC-------CCCSEEEEECCGGG
T ss_pred             hhCCc-------ccCCEEEEcCCccc
Confidence            87654       47999999876554

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.32  E-value=3.3e-11  Score=102.81  Aligned_cols=111  Identities=16%  Similarity=0.133  Sum_probs=83.3

Q ss_pred             CCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ++.+|||+|||+|..+..++..  ..+.|+++|+|+.+++.+++++..        .++. ++.++++|+..++..    
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r--------~g~~-nv~~~~~D~~~~~~~----  183 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISR--------CGIS-NVALTHFDGRVFGAA----  183 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHH--------HTCC-SEEEECCCSTTHHHH----
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCC-cEEEEeCCHHHhhhh----
Confidence            7889999999999999998875  346899999999999999999762        2332 589999998876421    


Q ss_pred             CCCCeeEEEEc------cccccccC-----CH-------HHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          162 DDAPFDICSCQ------FAMHYSWS-----TE-------ARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       162 ~~~~~D~i~~~------~~l~~~~~-----~~-------~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ..+.||+|++.      +++....+     +.       ..+..++.++.++|||||+|++++.
T Consensus       184 ~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          184 VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            24689999973      12211100     11       1245789999999999999999865

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.31  E-value=6.1e-11  Score=98.44  Aligned_cols=120  Identities=10%  Similarity=0.006  Sum_probs=92.9

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHHHhhcC---------------------------------------CeEEEEeCCh
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------------GYYVGIDIAE  117 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~---------------------------------------~~~~gvD~s~  117 (224)
                      +......++..+||.+||+|.+++..+....                                       ..++|+|+++
T Consensus       187 l~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~  266 (384)
T 3ldg_A          187 ILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDG  266 (384)
T ss_dssp             HHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCH
T ss_pred             HHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCH
Confidence            3333456778999999999999988765321                                       3599999999


Q ss_pred             hHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhcc
Q 027388          118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR  197 (224)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk  197 (224)
                      .+++.|++++.        ..++...+.+.++|+.+++.      ...||+|+++-.++.-+....+...+.+.+.+.|+
T Consensus       267 ~al~~Ar~Na~--------~~gl~~~I~~~~~D~~~l~~------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk  332 (384)
T 3ldg_A          267 RMVEIARKNAR--------EVGLEDVVKLKQMRLQDFKT------NKINGVLISNPPYGERLLDDKAVDILYNEMGETFA  332 (384)
T ss_dssp             HHHHHHHHHHH--------HTTCTTTEEEEECCGGGCCC------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH--------HcCCCCceEEEECChHHCCc------cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHh
Confidence            99999999987        34555679999999988764      45899999986654333455677788888888877


Q ss_pred             C--CeEEEEEeCChH
Q 027388          198 P--GGTFIGTMPDAN  210 (224)
Q Consensus       198 ~--gG~li~~~~~~~  210 (224)
                      +  ||.+++-+++..
T Consensus       333 ~~~g~~~~iit~~~~  347 (384)
T 3ldg_A          333 PLKTWSQFILTNDTD  347 (384)
T ss_dssp             TCTTSEEEEEESCTT
T ss_pred             hCCCcEEEEEECCHH
Confidence            6  899888888765

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.30  E-value=1.7e-11  Score=101.89  Aligned_cols=120  Identities=17%  Similarity=0.156  Sum_probs=90.5

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHHHhhcC---------------------------------------CeEEEEeCCh
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------------GYYVGIDIAE  117 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~---------------------------------------~~~~gvD~s~  117 (224)
                      +......++.+|||++||+|.+++.++....                                       ..++|+|+++
T Consensus       188 l~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~  267 (385)
T 3ldu_A          188 IYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDE  267 (385)
T ss_dssp             HHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCH
T ss_pred             HHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCH
Confidence            3333455678999999999999998765321                                       4699999999


Q ss_pred             hHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhcc
Q 027388          118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR  197 (224)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk  197 (224)
                      .+++.|++++.        ..++..++++.++|+.+++.      ..+||+|+++-.+..-+....+...+.+.+.+.|+
T Consensus       268 ~ai~~Ar~Na~--------~~gl~~~i~~~~~D~~~l~~------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk  333 (385)
T 3ldu_A          268 ESIDIARENAE--------IAGVDEYIEFNVGDATQFKS------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFR  333 (385)
T ss_dssp             HHHHHHHHHHH--------HHTCGGGEEEEECCGGGCCC------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--------HcCCCCceEEEECChhhcCc------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHh
Confidence            99999999986        33455569999999988764      46899999987654322233566777777877887


Q ss_pred             C--CeEEEEEeCChH
Q 027388          198 P--GGTFIGTMPDAN  210 (224)
Q Consensus       198 ~--gG~li~~~~~~~  210 (224)
                      +  ||.+++-+++..
T Consensus       334 ~~~g~~~~iit~~~~  348 (385)
T 3ldu_A          334 KLKNWSYYLITSYED  348 (385)
T ss_dssp             TSBSCEEEEEESCTT
T ss_pred             hCCCCEEEEEECCHH
Confidence            6  888888887754

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.30  E-value=1.3e-11  Score=98.52  Aligned_cols=111  Identities=16%  Similarity=0.128  Sum_probs=79.4

Q ss_pred             hcCCCeEEEecCCC------chhHHHHHhh-c-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeE-Eecccc
Q 027388           82 ARRGDVVLDLACGK------GGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL-ICGDCY  152 (224)
Q Consensus        82 ~~~~~~iLDiGcG~------G~~~~~l~~~-~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~-~~~d~~  152 (224)
                      ..++.+|||+|||+      |.  ..++.. . ..+|+|+|+|+.        +.              ++++ +++|+.
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v~--------------~v~~~i~gD~~  116 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------VS--------------DADSTLIGDCA  116 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------BC--------------SSSEEEESCGG
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------CC--------------CCEEEEECccc
Confidence            46788999999955      65  223332 2 468999999997        12              3788 999998


Q ss_pred             ccccccccCCCCCeeEEEEccccccc-------cCCHHHHHHHHHHHHhhccCCeEEEEEe---CChHHHHHHhhhcccc
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYS-------WSTEARARRALANVSALLRPGGTFIGTM---PDANVIIKKLREEHFC  222 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~-------~~~~~~~~~~l~~~~~~lk~gG~li~~~---~~~~~~~~~~~~~gf~  222 (224)
                      +.+.      .+.||+|+++...+..       .........+++.+.++|||||.|++..   .....+...+++.||.
T Consensus       117 ~~~~------~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~  190 (290)
T 2xyq_A          117 TVHT------ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWW  190 (290)
T ss_dssp             GCCC------SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEE
T ss_pred             cCCc------cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCc
Confidence            7654      3689999997542210       0112345689999999999999999865   3456788888888773

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.30  E-value=1.2e-11  Score=103.99  Aligned_cols=115  Identities=23%  Similarity=0.260  Sum_probs=85.2

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      .++.+|||+|||+|.++..+++.  ....++|+|+++.+++.|    .              ++.++++|+....     
T Consensus        38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~--------------~~~~~~~D~~~~~-----   94 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----P--------------WAEGILADFLLWE-----   94 (421)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----T--------------TEEEEESCGGGCC-----
T ss_pred             CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----C--------------CCcEEeCChhhcC-----
Confidence            45679999999999999988764  456899999999888766    1              3789999987654     


Q ss_pred             CCCCCeeEEEEccccccccC--------CHH-----------------HHHHHHHHHHhhccCCeEEEEEeCCh------
Q 027388          161 ADDAPFDICSCQFAMHYSWS--------TEA-----------------RARRALANVSALLRPGGTFIGTMPDA------  209 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~--------~~~-----------------~~~~~l~~~~~~lk~gG~li~~~~~~------  209 (224)
                       ..+.||+|+++-.......        ...                 ....++..+.++|+|||.+++.+|+.      
T Consensus        95 -~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~  173 (421)
T 2ih2_A           95 -PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLED  173 (421)
T ss_dssp             -CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGG
T ss_pred             -ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCcc
Confidence             2478999999743321100        111                 12367999999999999999988763      


Q ss_pred             -HHHHHHhhhccc
Q 027388          210 -NVIIKKLREEHF  221 (224)
Q Consensus       210 -~~~~~~~~~~gf  221 (224)
                       ..+++.+.+.++
T Consensus       174 ~~~lr~~l~~~~~  186 (421)
T 2ih2_A          174 FALLREFLAREGK  186 (421)
T ss_dssp             GHHHHHHHHHHSE
T ss_pred             HHHHHHHHHhcCC
Confidence             567777777664

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.29  E-value=3.3e-11  Score=100.46  Aligned_cols=120  Identities=10%  Similarity=0.012  Sum_probs=88.4

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHHHhhcC---------------------------------------CeEEEEeCCh
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------------GYYVGIDIAE  117 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~---------------------------------------~~~~gvD~s~  117 (224)
                      +......++..|||++||+|.+++.++....                                       ..++|+|+++
T Consensus       194 l~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~  273 (393)
T 3k0b_A          194 VLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDA  273 (393)
T ss_dssp             HHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCH
T ss_pred             HHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCH
Confidence            3333456778999999999999988765321                                       3599999999


Q ss_pred             hHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhcc
Q 027388          118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR  197 (224)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk  197 (224)
                      .+++.|++++.        ..++...+.+.++|+.+++.      ..+||+|+++-.+..-.....+...+.+.+.+.|+
T Consensus       274 ~al~~Ar~Na~--------~~gl~~~I~~~~~D~~~~~~------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk  339 (393)
T 3k0b_A          274 RLIEIAKQNAV--------EAGLGDLITFRQLQVADFQT------EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYK  339 (393)
T ss_dssp             HHHHHHHHHHH--------HTTCTTCSEEEECCGGGCCC------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--------HcCCCCceEEEECChHhCCC------CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHh
Confidence            99999999987        34555568999999988764      46899999996543221122455666666766766


Q ss_pred             C--CeEEEEEeCChH
Q 027388          198 P--GGTFIGTMPDAN  210 (224)
Q Consensus       198 ~--gG~li~~~~~~~  210 (224)
                      +  ||.+++-+++..
T Consensus       340 ~~~g~~~~iit~~~~  354 (393)
T 3k0b_A          340 RMPTWSVYVLTSYEL  354 (393)
T ss_dssp             TCTTCEEEEEECCTT
T ss_pred             cCCCCEEEEEECCHH
Confidence            5  888888887755

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.28  E-value=9.4e-11  Score=92.81  Aligned_cols=101  Identities=13%  Similarity=0.116  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec
Q 027388           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (224)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (224)
                      ..++..++......++ +|||||||+|.++..++... .+|+++|+++.+++.+++++.            ..+++++++
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~------------~~~v~vi~~   98 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLS------------GLPVRLVFQ   98 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTT------------TSSEEEEES
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcC------------CCCEEEEEC
Confidence            3456666776667778 99999999999999998654 699999999999999999876            346999999


Q ss_pred             cccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHH
Q 027388          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN  191 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~  191 (224)
                      |+.+++...    ...+|.|+++...+ +  +.+-...++..
T Consensus        99 D~l~~~~~~----~~~~~~iv~NlPy~-i--ss~il~~ll~~  133 (271)
T 3fut_A           99 DALLYPWEE----VPQGSLLVANLPYH-I--ATPLVTRLLKT  133 (271)
T ss_dssp             CGGGSCGGG----SCTTEEEEEEECSS-C--CHHHHHHHHHH
T ss_pred             ChhhCChhh----ccCccEEEecCccc-c--cHHHHHHHhcC
Confidence            999887631    13689988877654 3  44445555544

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.27  E-value=1.3e-10  Score=98.09  Aligned_cols=129  Identities=17%  Similarity=0.140  Sum_probs=87.1

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..++..+...++.+|||+|||+|.++..++.. ..+++|+|+|+.+++.|++++..        .++. ++.++++|+.
T Consensus       275 ~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~--------~~~~-~v~f~~~d~~  344 (433)
T 1uwv_A          275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARL--------NGLQ-NVTFYHENLE  344 (433)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHH--------TTCC-SEEEEECCTT
T ss_pred             HHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHH--------cCCC-ceEEEECCHH
Confidence            333444444456789999999999999999865 67999999999999999998762        2333 6999999997


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHH---HHhhhccc
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII---KKLREEHF  221 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~---~~~~~~gf  221 (224)
                      +... ......+.||+|+++-.....    .   .+++.+. .++|+++++++. ++..+.   ..|.+.||
T Consensus       345 ~~l~-~~~~~~~~fD~Vv~dPPr~g~----~---~~~~~l~-~~~p~~ivyvsc-~p~tlard~~~l~~~Gy  406 (433)
T 1uwv_A          345 EDVT-KQPWAKNGFDKVLLDPARAGA----A---GVMQQII-KLEPIRIVYVSC-NPATLARDSEALLKAGY  406 (433)
T ss_dssp             SCCS-SSGGGTTCCSEEEECCCTTCC----H---HHHHHHH-HHCCSEEEEEES-CHHHHHHHHHHHHHTTC
T ss_pred             HHhh-hhhhhcCCCCEEEECCCCccH----H---HHHHHHH-hcCCCeEEEEEC-ChHHHHhhHHHHHHCCc
Confidence            6321 000134689999987543322    2   3444444 378888888765 444333   34445565

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.26  E-value=1.1e-11  Score=105.08  Aligned_cols=130  Identities=17%  Similarity=0.204  Sum_probs=92.1

Q ss_pred             CceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--------------cCCeEEEEeCChhHHHHHHHhc
Q 027388           62 PIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------------KIGYYVGIDIAEGSIEDCRTRY  127 (224)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--------------~~~~~~gvD~s~~~~~~a~~~~  127 (224)
                      .+++++.+...+   +..+...++.+|||+|||+|.++..++..              ....++|+|+++.+++.|+.++
T Consensus       152 ~fyTP~~v~~~m---v~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl  228 (445)
T 2okc_A          152 QYFTPRPLIQAM---VDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL  228 (445)
T ss_dssp             GGCCCHHHHHHH---HHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             cccCcHHHHHHH---HHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHH
Confidence            344555554433   33334456789999999999999887653              2357999999999999999886


Q ss_pred             cCCcccccccccCCC-CeeEEeccccccccccccCCCCCeeEEEEccccccccCC-------------HHHHHHHHHHHH
Q 027388          128 NGDADHHQRRKKFSF-PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST-------------EARARRALANVS  193 (224)
Q Consensus       128 ~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~-------------~~~~~~~l~~~~  193 (224)
                      ..        .++.. ++.+.++|....+.      ...||+|+++..+......             ......++.++.
T Consensus       229 ~l--------~g~~~~~~~i~~gD~l~~~~------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~  294 (445)
T 2okc_A          229 YL--------HGIGTDRSPIVCEDSLEKEP------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMM  294 (445)
T ss_dssp             HH--------TTCCSSCCSEEECCTTTSCC------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHH
T ss_pred             HH--------hCCCcCCCCEeeCCCCCCcc------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHH
Confidence            51        23321 47789999876553      3589999998765543111             112357899999


Q ss_pred             hhccCCeEEEEEeCC
Q 027388          194 ALLRPGGTFIGTMPD  208 (224)
Q Consensus       194 ~~lk~gG~li~~~~~  208 (224)
                      +.|+|||++.+.+|+
T Consensus       295 ~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          295 LMLKTGGRAAVVLPD  309 (445)
T ss_dssp             HHEEEEEEEEEEEEH
T ss_pred             HHhccCCEEEEEECC
Confidence            999999999888764

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.26  E-value=7.3e-11  Score=94.49  Aligned_cols=89  Identities=19%  Similarity=0.214  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      .++..++..+...++.+|||||||+|.++..++.. ..+|++||+++.+++.+++++..           ..+++++++|
T Consensus        37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~-----------~~~v~vi~gD  104 (295)
T 3gru_A           37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL-----------YNNIEIIWGD  104 (295)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH-----------CSSEEEEESC
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc-----------CCCeEEEECc
Confidence            34555666666678899999999999999999865 56999999999999999988741           2369999999


Q ss_pred             ccccccccccCCCCCeeEEEEccccc
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMH  176 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~  176 (224)
                      +.++++     +...||+|+++..++
T Consensus       105 ~l~~~~-----~~~~fD~Iv~NlPy~  125 (295)
T 3gru_A          105 ALKVDL-----NKLDFNKVVANLPYQ  125 (295)
T ss_dssp             TTTSCG-----GGSCCSEEEEECCGG
T ss_pred             hhhCCc-----ccCCccEEEEeCccc
Confidence            998776     345799999887654

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.24  E-value=1.7e-10  Score=97.04  Aligned_cols=110  Identities=19%  Similarity=0.161  Sum_probs=81.4

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++.. ..+++|+|+|+.+++.|++++.        ..++.  +.++++|+.++..     
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~--------~ngl~--v~~~~~d~~~~~~-----  351 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVE--------INNVD--AEFEVASDREVSV-----  351 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHH--------HHTCC--EEEEECCTTTCCC-----
T ss_pred             cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHH--------HcCCc--EEEEECChHHcCc-----
Confidence            467889999999999999998754 5699999999999999999876        22333  8999999987642     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhh
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR  217 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~  217 (224)
                        ..||+|++...-..+      ...++..+. .|+|+|+++++. |+..+.+.+.
T Consensus       352 --~~fD~Vv~dPPr~g~------~~~~~~~l~-~l~p~givyvsc-~p~tlarDl~  397 (425)
T 2jjq_A          352 --KGFDTVIVDPPRAGL------HPRLVKRLN-REKPGVIVYVSC-NPETFARDVK  397 (425)
T ss_dssp             --TTCSEEEECCCTTCS------CHHHHHHHH-HHCCSEEEEEES-CHHHHHHHHH
T ss_pred             --cCCCEEEEcCCccch------HHHHHHHHH-hcCCCcEEEEEC-ChHHHHhHHh
Confidence              289999987543221      123444443 489999999876 5555555544

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.23  E-value=4.4e-11  Score=93.48  Aligned_cols=87  Identities=9%  Similarity=0.179  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      +...++..+...++.+|||||||+|.++..++... .+++++|+|+.+++.+++++..           ..+++++++|+
T Consensus        18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~-----------~~~v~~~~~D~   85 (244)
T 1qam_A           18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD-----------HDNFQVLNKDI   85 (244)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT-----------CCSEEEECCCG
T ss_pred             HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc-----------CCCeEEEEChH
Confidence            34445544455678899999999999999988665 6999999999999999998751           23689999999


Q ss_pred             cccccccccCCCCCeeEEEEcccc
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAM  175 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l  175 (224)
                      .+++..    ....| .|+++...
T Consensus        86 ~~~~~~----~~~~~-~vv~nlPy  104 (244)
T 1qam_A           86 LQFKFP----KNQSY-KIFGNIPY  104 (244)
T ss_dssp             GGCCCC----SSCCC-EEEEECCG
T ss_pred             HhCCcc----cCCCe-EEEEeCCc
Confidence            887652    12345 45555443

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.20  E-value=1.5e-12  Score=101.94  Aligned_cols=112  Identities=14%  Similarity=0.173  Sum_probs=79.1

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ++..+...++.+|||||||+|.++..++... .+++|+|+|+.+++.+++++.           ...+++++++|+.+++
T Consensus        21 i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~-----------~~~~v~~~~~D~~~~~   88 (245)
T 1yub_A           21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK-----------LNTRVTLIHQDILQFQ   88 (245)
T ss_dssp             HHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT-----------TCSEEEECCSCCTTTT
T ss_pred             HHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc-----------cCCceEEEECChhhcC
Confidence            4444455678899999999999999988665 799999999999998877654           1345899999998876


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHH--------------HHHHhhccCCeEEEEEeC
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRAL--------------ANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l--------------~~~~~~lk~gG~li~~~~  207 (224)
                      ..    ..++| .|+++...+.   +......++              +.+.++|+|||.+++.+.
T Consensus        89 ~~----~~~~f-~vv~n~Py~~---~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~  146 (245)
T 1yub_A           89 FP----NKQRY-KIVGNIPYHL---STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH  146 (245)
T ss_dssp             CC----CSSEE-EEEEECCSSS---CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred             cc----cCCCc-EEEEeCCccc---cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence            51    13578 6666543321   222233332              558888999988776543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.18  E-value=7.6e-10  Score=86.92  Aligned_cols=91  Identities=11%  Similarity=0.183  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      .++..++......++.+|||||||+|.++..++... .+++++|+++.+++.+++++..           ..+++++++|
T Consensus        16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~-----------~~~v~~i~~D   83 (255)
T 3tqs_A           16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ-----------QKNITIYQND   83 (255)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT-----------CTTEEEEESC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh-----------CCCcEEEEcc
Confidence            345556666667788999999999999999998654 6999999999999999998761           3469999999


Q ss_pred             ccccccccccCCCCCeeEEEEcccc
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAM  175 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l  175 (224)
                      +.++++.... ..++|| |+++...
T Consensus        84 ~~~~~~~~~~-~~~~~~-vv~NlPY  106 (255)
T 3tqs_A           84 ALQFDFSSVK-TDKPLR-VVGNLPY  106 (255)
T ss_dssp             TTTCCGGGSC-CSSCEE-EEEECCH
T ss_pred             hHhCCHHHhc-cCCCeE-EEecCCc
Confidence            9988764321 235788 5555443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.12  E-value=2.6e-10  Score=94.65  Aligned_cols=120  Identities=15%  Similarity=0.045  Sum_probs=88.8

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCC-eeEEecccccccc-cc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYEVHL-DK  158 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~-~~  158 (224)
                      .++.+|||++||+|.+++.++..  +..+++++|+++.+++.+++++..        .++..+ +.++++|+.++.. . 
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~--------Ngl~~~~v~v~~~Da~~~l~~~-  121 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL--------NNIPEDRYEIHGMEANFFLRKE-  121 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH--------TTCCGGGEEEECSCHHHHHHSC-
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------hCCCCceEEEEeCCHHHHHHHh-
Confidence            46789999999999999998864  336899999999999999999873        344445 8999999876431 1 


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH-----HHHHHhhhcccc
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN-----VIIKKLREEHFC  222 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~-----~~~~~~~~~gf~  222 (224)
                         ....||+|++.- ..    .   ...++..+.+.|++||+|+++.-...     .+...+++.|..
T Consensus       122 ---~~~~fD~V~lDP-~g----~---~~~~l~~a~~~Lk~gGll~~t~t~~~~l~g~~~~~~~rkYg~~  179 (392)
T 3axs_A          122 ---WGFGFDYVDLDP-FG----T---PVPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMRRYMAR  179 (392)
T ss_dssp             ---CSSCEEEEEECC-SS----C---CHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSB
T ss_pred             ---hCCCCcEEEECC-Cc----C---HHHHHHHHHHHhCCCCEEEEEecchhhhccccHHHHHHHhCCc
Confidence               145799999875 21    1   23588888999999999998865544     334455555543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.09  E-value=1.7e-09  Score=89.67  Aligned_cols=111  Identities=14%  Similarity=0.024  Sum_probs=80.4

Q ss_pred             CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCccccc-------ccccCCCCeeEEeccccccc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQ-------RRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~-------~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ++.+|||+|||+|..++.++.. ...+|+++|+++.+++.+++++..+.....       ...++. ++.++++|+..+.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence            6889999999999999998876 446899999999999999999873200000       000232 2889999987653


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ..    ....||+|++.- ..    .   ...++..+.+.|++||+++++..
T Consensus       126 ~~----~~~~fD~I~lDP-~~----~---~~~~l~~a~~~lk~gG~l~vt~t  165 (378)
T 2dul_A          126 AE----RHRYFHFIDLDP-FG----S---PMEFLDTALRSAKRRGILGVTAT  165 (378)
T ss_dssp             HH----STTCEEEEEECC-SS----C---CHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             Hh----ccCCCCEEEeCC-CC----C---HHHHHHHHHHhcCCCCEEEEEee
Confidence            21    135799999653 21    1   24678888999999999988754

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.09  E-value=5.9e-10  Score=96.55  Aligned_cols=145  Identities=17%  Similarity=0.189  Sum_probs=97.4

Q ss_pred             CCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh----c---------------CCeEEEEeCChhHHH
Q 027388           61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA----K---------------IGYYVGIDIAEGSIE  121 (224)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~----~---------------~~~~~gvD~s~~~~~  121 (224)
                      ..+++++.+..++   +..+.+.++.+|||.|||+|.++..++..    .               ...++|+|+++.+++
T Consensus       149 G~fyTP~~iv~~m---v~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~  225 (541)
T 2ar0_A          149 GQYFTPRPLIKTI---IHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR  225 (541)
T ss_dssp             -CCCCCHHHHHHH---HHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred             CeeeCCHHHHHHH---HHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHH
Confidence            3455556554443   33334456789999999999999877642    1               237999999999999


Q ss_pred             HHHHhccCCcccccccccCCC----CeeEEeccccccccccccCCCCCeeEEEEccccccccCC----------HHHHHH
Q 027388          122 DCRTRYNGDADHHQRRKKFSF----PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST----------EARARR  187 (224)
Q Consensus       122 ~a~~~~~~~~~~~~~~~~~~~----~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~----------~~~~~~  187 (224)
                      .|+.++.-        .+...    .+.+.++|....+..    ....||+|+++-.+......          ......
T Consensus       226 lA~~nl~l--------~gi~~~~~~~~~I~~gDtL~~~~~----~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~  293 (541)
T 2ar0_A          226 LALMNCLL--------HDIEGNLDHGGAIRLGNTLGSDGE----NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLC  293 (541)
T ss_dssp             HHHHHHHT--------TTCCCBGGGTBSEEESCTTSHHHH----TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHH
T ss_pred             HHHHHHHH--------hCCCccccccCCeEeCCCcccccc----cccCCeEEEECCCcccccchhhHhhcCCCCCchHHH
Confidence            99988652        12221    267888987654321    34689999998655432110          122347


Q ss_pred             HHHHHHhhccCCeEEEEEeCCh--------HHHHHHhhhcc
Q 027388          188 ALANVSALLRPGGTFIGTMPDA--------NVIIKKLREEH  220 (224)
Q Consensus       188 ~l~~~~~~lk~gG~li~~~~~~--------~~~~~~~~~~g  220 (224)
                      ++..+.+.|+|||++.+.+|+.        ..+++.|.+.+
T Consensus       294 Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~~  334 (541)
T 2ar0_A          294 FMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC  334 (541)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE
T ss_pred             HHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhhcC
Confidence            8999999999999998887753        24566665544

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.09  E-value=1.2e-09  Score=90.47  Aligned_cols=112  Identities=11%  Similarity=0.105  Sum_probs=80.0

Q ss_pred             CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC--
Q 027388           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD--  162 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--  162 (224)
                      +.+|||+|||+|.++..++. ...+|+++|+|+.+++.|++++..        .++ .+++++++|+.+.... ....  
T Consensus       214 ~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~--------ng~-~~v~~~~~d~~~~~~~-~~~~~~  282 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAA--------NHI-DNVQIIRMAAEEFTQA-MNGVRE  282 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHH--------TTC-CSEEEECCCSHHHHHH-HSSCCC
T ss_pred             CCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHH--------cCC-CceEEEECCHHHHHHH-Hhhccc
Confidence            57899999999999998875 556999999999999999999862        233 3689999998765311 0000  


Q ss_pred             ----------CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhh
Q 027388          163 ----------DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR  217 (224)
Q Consensus       163 ----------~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~  217 (224)
                                ...||+|++.-.-.          .+...+.+.|+++|.+++...++..+.+.+.
T Consensus       283 ~~~l~~~~~~~~~fD~Vv~dPPr~----------g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~  337 (369)
T 3bt7_A          283 FNRLQGIDLKSYQCETIFVDPPRS----------GLDSETEKMVQAYPRILYISCNPETLCKNLE  337 (369)
T ss_dssp             CTTGGGSCGGGCCEEEEEECCCTT----------CCCHHHHHHHTTSSEEEEEESCHHHHHHHHH
T ss_pred             cccccccccccCCCCEEEECcCcc----------ccHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence                      13799999764321          1223456666788888888888776665443

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.08  E-value=4.7e-10  Score=87.85  Aligned_cols=74  Identities=14%  Similarity=0.172  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      .++..++......++.+|||||||+|.++..++..+..+++++|+++.+++.++++ .            ..+++++++|
T Consensus        18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~------------~~~v~~i~~D   84 (249)
T 3ftd_A           18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G------------DERLEVINED   84 (249)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C------------CTTEEEECSC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c------------CCCeEEEEcc
Confidence            34555666666677889999999999999999866457999999999999999876 3            3468999999


Q ss_pred             ccccccc
Q 027388          151 CYEVHLD  157 (224)
Q Consensus       151 ~~~~~~~  157 (224)
                      +.++++.
T Consensus        85 ~~~~~~~   91 (249)
T 3ftd_A           85 ASKFPFC   91 (249)
T ss_dssp             TTTCCGG
T ss_pred             hhhCChh
Confidence            9988764

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.08  E-value=2.6e-09  Score=86.21  Aligned_cols=115  Identities=11%  Similarity=0.014  Sum_probs=79.2

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      .+.++.+|||+|||+|..+..++..  ..+.|+++|+++.+++.+++++..        .++ .++.++++|+.++....
T Consensus        99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r--------~g~-~~v~~~~~D~~~~~~~~  169 (309)
T 2b9e_A           99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR--------AGV-SCCELAEEDFLAVSPSD  169 (309)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--------TTC-CSEEEEECCGGGSCTTC
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------cCC-CeEEEEeCChHhcCccc
Confidence            4567889999999999999998864  457999999999999999999872        222 35899999987764310


Q ss_pred             ccCCCCCeeEEEEcc------ccccccC----------CH----HHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          159 VLADDAPFDICSCQF------AMHYSWS----------TE----ARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~------~l~~~~~----------~~----~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .  ....||.|++.-      ++....+          ..    ..+..+|..+.++++ ||+|+.+|.
T Consensus       170 ~--~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC  235 (309)
T 2b9e_A          170 P--RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC  235 (309)
T ss_dssp             G--GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred             c--ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence            0  015799999731      2211000          00    112456777777776 999988754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.03  E-value=2.5e-09  Score=95.26  Aligned_cols=124  Identities=14%  Similarity=0.087  Sum_probs=87.1

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhc-------------------------------------------CCeEEE
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-------------------------------------------IGYYVG  112 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-------------------------------------------~~~~~g  112 (224)
                      ++......++..|||.+||+|.+++..+...                                           ...++|
T Consensus       182 ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G  261 (703)
T 3v97_A          182 IVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYG  261 (703)
T ss_dssp             HHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_pred             HHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEE
Confidence            3333345577899999999999998876421                                           147999


Q ss_pred             EeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHH--
Q 027388          113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA--  190 (224)
Q Consensus       113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~--  190 (224)
                      +|+++.+++.|+.++.        ..++...+.+.++|+.++....   ..+.||+|+++-....-+....+...+.+  
T Consensus       262 ~Did~~av~~A~~N~~--------~agv~~~i~~~~~D~~~~~~~~---~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l  330 (703)
T 3v97_A          262 SDSDARVIQRARTNAR--------LAGIGELITFEVKDVAQLTNPL---PKGPYGTVLSNPPYGERLDSEPALIALHSLL  330 (703)
T ss_dssp             EESCHHHHHHHHHHHH--------HTTCGGGEEEEECCGGGCCCSC---TTCCCCEEEECCCCCC---CCHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHH--------HcCCCCceEEEECChhhCcccc---ccCCCCEEEeCCCccccccchhHHHHHHHHH
Confidence            9999999999999987        3455666899999998764310   12389999998654432223344444444  


Q ss_pred             -HHHhhccCCeEEEEEeCChH
Q 027388          191 -NVSALLRPGGTFIGTMPDAN  210 (224)
Q Consensus       191 -~~~~~lk~gG~li~~~~~~~  210 (224)
                       ++.+.+.|||.+++-+++..
T Consensus       331 ~~~lk~~~~g~~~~ilt~~~~  351 (703)
T 3v97_A          331 GRIMKNQFGGWNLSLFSASPD  351 (703)
T ss_dssp             HHHHHHHCTTCEEEEEESCHH
T ss_pred             HHHHHhhCCCCeEEEEeCCHH
Confidence             44455568999999998865

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=99.02  E-value=9e-10  Score=96.20  Aligned_cols=102  Identities=14%  Similarity=0.120  Sum_probs=75.0

Q ss_pred             CCeEEEecCCCchhHHHHHhh---cCC--eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           85 GDVVLDLACGKGGDLIKWDKA---KIG--YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~---~~~--~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...|||+|||+|.+....+..   ...  +|++||.|+ +...+++..+        .+++...|+++++|++++.+   
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~--------~N~~~dkVtVI~gd~eev~L---  425 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQ--------FEEWGSQVTVVSSDMREWVA---  425 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHH--------HHTTGGGEEEEESCTTTCCC---
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHH--------hccCCCeEEEEeCcceeccC---
Confidence            357999999999885544432   322  689999997 6667777766        45677889999999999876   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                         ++++|+|++=+ +.+++..+-.+ .++....+.|||||+++
T Consensus       426 ---PEKVDIIVSEw-MG~fLl~E~ml-evL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          426 ---PEKADIIVSEL-LGSFADNELSP-ECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             ---SSCEEEEECCC-CBTTBGGGCHH-HHHHHHGGGEEEEEEEE
T ss_pred             ---CcccCEEEEEc-CcccccccCCH-HHHHHHHHhcCCCcEEc
Confidence               57999999633 23333233333 67888899999999977

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.98  E-value=2e-09  Score=86.41  Aligned_cols=88  Identities=16%  Similarity=0.080  Sum_probs=66.3

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      ++..+...++.+|||+|||+|.++..++... ..+++|+|+|+.+++.|++++..        .  +.++.++++|+.++
T Consensus        18 ~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~--------~--g~~v~~v~~d~~~l   87 (301)
T 1m6y_A           18 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE--------F--SDRVSLFKVSYREA   87 (301)
T ss_dssp             HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG--------G--TTTEEEEECCGGGH
T ss_pred             HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh--------c--CCcEEEEECCHHHH
Confidence            4455556678899999999999999988764 56999999999999999999862        1  24699999998876


Q ss_pred             ccccccCCCCCeeEEEEcc
Q 027388          155 HLDKVLADDAPFDICSCQF  173 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~  173 (224)
                      +..........||.|++..
T Consensus        88 ~~~l~~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           88 DFLLKTLGIEKVDGILMDL  106 (301)
T ss_dssp             HHHHHHTTCSCEEEEEEEC
T ss_pred             HHHHHhcCCCCCCEEEEcC
Confidence            4200000125799999754

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.98  E-value=3e-09  Score=84.57  Aligned_cols=91  Identities=12%  Similarity=0.150  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcC---CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEE
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI---GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI  147 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~---~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~  147 (224)
                      .++..++......++.+|||||||+|.++..++....   .+++++|+++.+++.++++.             ..+++++
T Consensus        29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-------------~~~v~~i   95 (279)
T 3uzu_A           29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-------------GELLELH   95 (279)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-------------GGGEEEE
T ss_pred             HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-------------CCCcEEE
Confidence            3455566666667889999999999999999986543   23999999999999998873             1248999


Q ss_pred             eccccccccccccCCC-CCeeEEEEccc
Q 027388          148 CGDCYEVHLDKVLADD-APFDICSCQFA  174 (224)
Q Consensus       148 ~~d~~~~~~~~~~~~~-~~~D~i~~~~~  174 (224)
                      ++|+.++++....... .....|+++..
T Consensus        96 ~~D~~~~~~~~~~~~~~~~~~~vv~NlP  123 (279)
T 3uzu_A           96 AGDALTFDFGSIARPGDEPSLRIIGNLP  123 (279)
T ss_dssp             ESCGGGCCGGGGSCSSSSCCEEEEEECC
T ss_pred             ECChhcCChhHhcccccCCceEEEEccC
Confidence            9999988764432111 02345665543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.97  E-value=7.8e-09  Score=89.35  Aligned_cols=152  Identities=16%  Similarity=0.154  Sum_probs=102.8

Q ss_pred             cCCceehhhhHHHHHHHHHHHh-hcCCCeEEEecCCCchhHHHHHhh----cCCeEEEEeCChhHHHHHHHhccCCcccc
Q 027388           60 ASPIIHLKKLNNWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKA----KIGYYVGIDIAEGSIEDCRTRYNGDADHH  134 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~  134 (224)
                      ...+++++.+...+..++.... ..++.+|||.+||+|.++..++..    ....++|+|+++.++..|+.++.      
T Consensus       196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~------  269 (542)
T 3lkd_A          196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMI------  269 (542)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHH------
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHH------
Confidence            4456677777666665544211 346789999999999999887654    24589999999999999998865      


Q ss_pred             cccccCC-CCeeEEeccccccccccccCCCCCeeEEEEccccccccCC-------------------HHHHHHHHHHHHh
Q 027388          135 QRRKKFS-FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST-------------------EARARRALANVSA  194 (224)
Q Consensus       135 ~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~-------------------~~~~~~~l~~~~~  194 (224)
                        ..++. .++.+.++|....+++.  .....||+|+++-.+..-+..                   ...-..++..+.+
T Consensus       270 --l~gi~~~~~~I~~gDtL~~d~p~--~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~  345 (542)
T 3lkd_A          270 --LHGVPIENQFLHNADTLDEDWPT--QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYY  345 (542)
T ss_dssp             --HTTCCGGGEEEEESCTTTSCSCC--SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHH
T ss_pred             --HcCCCcCccceEecceecccccc--cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHH
Confidence              22332 34788999987653211  135789999987533211100                   0011358999999


Q ss_pred             hcc-CCeEEEEEeCCh--------HHHHHHhhhccc
Q 027388          195 LLR-PGGTFIGTMPDA--------NVIIKKLREEHF  221 (224)
Q Consensus       195 ~lk-~gG~li~~~~~~--------~~~~~~~~~~gf  221 (224)
                      .|+ +||++.+.+|+.        ..+++.+.+.+.
T Consensus       346 ~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~  381 (542)
T 3lkd_A          346 HLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGA  381 (542)
T ss_dssp             TBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTTC
T ss_pred             HhCCCceeEEEEecchHhhCCchhHHHHHHHHhCCc
Confidence            999 999998887753        346666666554

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.96  E-value=2e-09  Score=93.20  Aligned_cols=145  Identities=17%  Similarity=0.111  Sum_probs=95.8

Q ss_pred             CCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--------c--------CCeEEEEeCChhHHHHHH
Q 027388           61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------K--------IGYYVGIDIAEGSIEDCR  124 (224)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--------~--------~~~~~gvD~s~~~~~~a~  124 (224)
                      ..+++++.+..++..++   .+.+ .+|||.+||+|.++..++..        .        ...++|+|+++.++..|+
T Consensus       225 G~fyTP~~Vv~lmv~ll---~p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~  300 (544)
T 3khk_A          225 GQYYTPKSIVTLIVEML---EPYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAA  300 (544)
T ss_dssp             TTTCCCHHHHHHHHHHH---CCCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHH
T ss_pred             CeEeCCHHHHHHHHHHH---hcCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHH
Confidence            45566676655554443   2333 49999999999998876431        0        347999999999999999


Q ss_pred             HhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcccccc-------------------------cc
Q 027388          125 TRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY-------------------------SW  179 (224)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~-------------------------~~  179 (224)
                      .++.        ..++..++.+.++|....+..    ....||+|+++-.+..                         +.
T Consensus       301 ~Nl~--------l~gi~~~i~i~~gDtL~~~~~----~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~  368 (544)
T 3khk_A          301 MNMV--------IRGIDFNFGKKNADSFLDDQH----PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTP  368 (544)
T ss_dssp             HHHH--------HTTCCCBCCSSSCCTTTSCSC----TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCC
T ss_pred             HHHH--------HhCCCcccceeccchhcCccc----ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccC
Confidence            8875        223333444577776544321    3578999999754432                         10


Q ss_pred             CCHHHHHHHHHHHHhhccCCeEEEEEeCCh---------HHHHHHhhhccc
Q 027388          180 STEARARRALANVSALLRPGGTFIGTMPDA---------NVIIKKLREEHF  221 (224)
Q Consensus       180 ~~~~~~~~~l~~~~~~lk~gG~li~~~~~~---------~~~~~~~~~~gf  221 (224)
                      .....-..++..+.+.|++||++.+.+|+.         ..+++.+.+.+.
T Consensus       369 ~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~  419 (544)
T 3khk_A          369 PTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDL  419 (544)
T ss_dssp             CTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTC
T ss_pred             CCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCc
Confidence            011112368999999999999988887752         356666666554

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.95  E-value=4.3e-09  Score=82.27  Aligned_cols=115  Identities=18%  Similarity=0.236  Sum_probs=72.9

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      +.+.....++.+|||||||+|.++..++.. ....+.++|++.++...   ...        ....+.++..+..++...
T Consensus        66 i~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~---pi~--------~~~~g~~ii~~~~~~dv~  134 (277)
T 3evf_A           66 FHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEK---PMN--------VQSLGWNIITFKDKTDIH  134 (277)
T ss_dssp             HHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCC---CCC--------CCBTTGGGEEEECSCCTT
T ss_pred             HHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccc---ccc--------cCcCCCCeEEEeccceeh
Confidence            333334567789999999999999987654 44567888888543110   000        001122355556665333


Q ss_pred             ccccccCCCCCeeEEEEccccc----cccCCHHHHHHHHHHHHhhccCC-eEEEEEeCC
Q 027388          155 HLDKVLADDAPFDICSCQFAMH----YSWSTEARARRALANVSALLRPG-GTFIGTMPD  208 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~----~~~~~~~~~~~~l~~~~~~lk~g-G~li~~~~~  208 (224)
                      .+     ....||+|+|..+.+    ++  .......++..+.++|+|| |.|++....
T Consensus       135 ~l-----~~~~~DlVlsD~apnsG~~~~--D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          135 RL-----EPVKCDTLLCDIGESSSSSVT--EGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             TS-----CCCCCSEEEECCCCCCSCHHH--HHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             hc-----CCCCccEEEecCccCcCchHH--HHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            33     467899999988665    22  1111123478889999999 999999777

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.95  E-value=1.6e-09  Score=85.18  Aligned_cols=113  Identities=12%  Similarity=0.002  Sum_probs=75.6

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCCh-------hHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE-------GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~-------~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      ..++.+|||+|||+|.++..++.. ..+|+++|+|+       .+++.|+++..        ..++..+++++++|+.++
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~--------~~~~~~ri~~~~~d~~~~  151 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPE--------TQDTAARINLHFGNAAEQ  151 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHH--------HHHHHTTEEEEESCHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHH--------hhCCccCeEEEECCHHHH
Confidence            356789999999999999998865 56899999999       99999987754        223334599999998764


Q ss_pred             ccccccCCC--CCeeEEEEccccccccC----------------CHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          155 HLDKVLADD--APFDICSCQFAMHYSWS----------------TEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       155 ~~~~~~~~~--~~~D~i~~~~~l~~~~~----------------~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ... .  +.  ++||+|++...+.+...                ...+...++..+.++.+.  .+++..|.
T Consensus       152 l~~-~--~~~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p~  218 (258)
T 2r6z_A          152 MPA-L--VKTQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRPR  218 (258)
T ss_dssp             HHH-H--HHHHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEET
T ss_pred             HHh-h--hccCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcCC
Confidence            210 0  12  68999999765543210                112345566666666643  45555444

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.91  E-value=2.1e-09  Score=84.30  Aligned_cols=90  Identities=8%  Similarity=0.012  Sum_probs=64.5

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCe--EEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGY--YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~--~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (224)
                      ++..++..+...++.+|||||||+|.++. +. .. .+  ++++|+++.|++.+++++..           ..+++++++
T Consensus         9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~-----------~~~v~~i~~   74 (252)
T 1qyr_A            9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFL-----------GPKLTIYQQ   74 (252)
T ss_dssp             HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTT-----------GGGEEEECS
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhcc-----------CCceEEEEC
Confidence            34555666666778899999999999999 64 33 56  99999999999999988651           136999999


Q ss_pred             cccccccccccCCCCCeeEEEEcccc
Q 027388          150 DCYEVHLDKVLADDAPFDICSCQFAM  175 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~D~i~~~~~l  175 (224)
                      |+.++++.......+..+.|+++...
T Consensus        75 D~~~~~~~~~~~~~~~~~~vvsNlPY  100 (252)
T 1qyr_A           75 DAMTFNFGELAEKMGQPLRVFGNLPY  100 (252)
T ss_dssp             CGGGCCHHHHHHHHTSCEEEEEECCT
T ss_pred             chhhCCHHHhhcccCCceEEEECCCC
Confidence            99887653210001234677776553

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.85  E-value=3.3e-08  Score=74.50  Aligned_cols=104  Identities=8%  Similarity=-0.008  Sum_probs=73.3

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccC--CCCeeEEeccccccc-----
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--SFPARLICGDCYEVH-----  155 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~--~~~v~~~~~d~~~~~-----  155 (224)
                      .+.++|||+|||  .-+..+++...++++.+|.++...+.|++.+.        ..++  ..++.++.+|+.+..     
T Consensus        29 ~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~--------~~g~~~~~~I~~~~gda~~~~~wg~p   98 (202)
T 3cvo_A           29 EEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLA--------ANPPAEGTEVNIVWTDIGPTGDWGHP   98 (202)
T ss_dssp             HHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHH--------HSCCCTTCEEEEEECCCSSBCGGGCB
T ss_pred             hCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH--------HcCCCCCCceEEEEeCchhhhccccc
Confidence            467899999985  34444444325799999999999999999987        3344  557999999976431     


Q ss_pred             --------ccc----c--cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 --------LDK----V--LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 --------~~~----~--~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                              +..    .  ....++||+|+.....         ....+..+.+.|+|||++++.
T Consensus        99 ~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k---------~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A           99 VSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF---------RVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             SSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS---------HHHHHHHHHHHCSSCEEEEET
T ss_pred             ccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC---------chhHHHHHHHhcCCCeEEEEe
Confidence                    000    0  0023789999987642         124556677999999999875

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.84  E-value=8.8e-08  Score=85.19  Aligned_cols=140  Identities=15%  Similarity=0.061  Sum_probs=88.2

Q ss_pred             CCceehhhhHHHHHHHHHHHh---hcCCCeEEEecCCCchhHHHHHhhc----CCeEEEEeCChhHHHHH--HHhccCCc
Q 027388           61 SPIIHLKKLNNWIKSVLVQLY---ARRGDVVLDLACGKGGDLIKWDKAK----IGYYVGIDIAEGSIEDC--RTRYNGDA  131 (224)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~iLDiGcG~G~~~~~l~~~~----~~~~~gvD~s~~~~~~a--~~~~~~~~  131 (224)
                      ..++.+..+..++..+.....   ..++.+|||.|||+|.++..++...    ...++|+|+++.+++.|  +.++..++
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            345566676666655532221   2357899999999999999887543    34799999999999999  54443211


Q ss_pred             ccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHH-------------------------HHH
Q 027388          132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA-------------------------RAR  186 (224)
Q Consensus       132 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~-------------------------~~~  186 (224)
                      ..    .+.. ...+...|+......    ....||+|+++-.+........                         ...
T Consensus       375 Ll----hGi~-~~~I~~dD~L~~~~~----~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~  445 (878)
T 3s1s_A          375 LV----SSNN-APTITGEDVCSLNPE----DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEA  445 (878)
T ss_dssp             TC----BTTB-CCEEECCCGGGCCGG----GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHH
T ss_pred             hh----cCCC-cceEEecchhccccc----ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHH
Confidence            11    1111 124445555442211    2478999999865522111111                         134


Q ss_pred             HHHHHHHhhccCCeEEEEEeCCh
Q 027388          187 RALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       187 ~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      .++..+.+.|++||++.+.+|+.
T Consensus       446 aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          446 LFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             HHHHHHHHHSCTTCEEEEEEETH
T ss_pred             HHHHHHHHhcCCCcEEEEEEChH
Confidence            57888999999999999988863

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.83  E-value=9e-09  Score=90.12  Aligned_cols=108  Identities=16%  Similarity=0.031  Sum_probs=73.4

Q ss_pred             CCeEEEecCCCchhHHHHHhh----c----------CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           85 GDVVLDLACGKGGDLIKWDKA----K----------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~----~----------~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      .+.|||||||+|.+....+..    +          ..+|++||.++.++..++.+..         .++...|+++.+|
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~---------Ng~~d~VtVI~gd  480 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV---------RTWKRRVTIIESD  480 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH---------HTTTTCSEEEESC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh---------cCCCCeEEEEeCc
Confidence            458999999999986533221    1          2389999999977766555543         3667779999999


Q ss_pred             ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                      ++++.+.......+++|+|++=+. .++.+.+ -....|..+.+.|||||+++
T Consensus       481 ~eev~lp~~~~~~ekVDIIVSElm-Gsfl~nE-L~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          481 MRSLPGIAKDRGFEQPDIIVSELL-GSFGDNE-LSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             GGGHHHHHHHTTCCCCSEEEECCC-BTTBGGG-SHHHHHHTTGGGSCTTCEEE
T ss_pred             hhhcccccccCCCCcccEEEEecc-ccccchh-ccHHHHHHHHHhCCCCcEEE
Confidence            998865100002579999997443 3332222 23446677789999999877

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.82  E-value=3e-08  Score=78.89  Aligned_cols=117  Identities=15%  Similarity=0.180  Sum_probs=83.9

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...+++||=||.|.|..+..+++. ...+++.||+++..++.+++.+.....    ...-+.+++++.+|...+-..   
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~----~~~~dpRv~v~~~Dg~~~l~~---  153 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNA----GSYDDPRFKLVIDDGVNFVNQ---  153 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHT----TGGGCTTEEEEESCTTTTTSC---
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccc----cccCCCcEEEEechHHHHHhh---
Confidence            356789999999999999998875 456899999999999999998741100    001246799999998876532   


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                       ..+.||+|+....=..-....-.-..+++.+++.|+|||+++...
T Consensus       154 -~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          154 -TSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             -SSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             -ccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence             457899999764211000000012468999999999999999863

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.82  E-value=3.4e-08  Score=81.37  Aligned_cols=137  Identities=12%  Similarity=0.063  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHhhc-----CCCeEEEecCCCchhHHHHHh--------h--------cCCeEEEEeCChhHHHHHHHhc
Q 027388           69 LNNWIKSVLVQLYAR-----RGDVVLDLACGKGGDLIKWDK--------A--------KIGYYVGIDIAEGSIEDCRTRY  127 (224)
Q Consensus        69 ~~~~~~~~~~~~~~~-----~~~~iLDiGcG~G~~~~~l~~--------~--------~~~~~~gvD~s~~~~~~a~~~~  127 (224)
                      ...+++..+..+...     ...+|+|+|||+|.++..+..        .        ..-.++..|+........-+.+
T Consensus        32 ~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L  111 (374)
T 3b5i_A           32 MLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLL  111 (374)
T ss_dssp             HHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHS
T ss_pred             HHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhh
Confidence            344555555544333     257899999999998887632        1        1236889999998888877777


Q ss_pred             cCCcccc---cccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCH----------------------
Q 027388          128 NGDADHH---QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE----------------------  182 (224)
Q Consensus       128 ~~~~~~~---~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~----------------------  182 (224)
                      ......-   ........+..|+.+....+-.  ..++.+++|+|+++.++||+...+                      
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~--rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~  189 (374)
T 3b5i_A          112 PPLVSNTCMEECLAADGNRSYFVAGVPGSFYR--RLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAG  189 (374)
T ss_dssp             CCBCCCC--CCC---CCCBCSEEEEEESCTTS--CCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCC
T ss_pred             hhhhhhcchhhhccccCCCceEEEecChhhhc--ccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCC
Confidence            6321000   0000011112233333222110  112689999999999999983211                      


Q ss_pred             ------------HHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          183 ------------ARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       183 ------------~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                                  .|...+|+...+.|+|||.+++++.
T Consensus       190 ~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          190 EKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence                        2677789999999999999998754

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.80  E-value=7.6e-09  Score=81.00  Aligned_cols=110  Identities=18%  Similarity=0.235  Sum_probs=70.4

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      .+.++.+|||||||+|.|+..++.. ....++|+|++..+...+...           .....++..+..++.-..+   
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-----------~~~g~~ii~~~~~~dv~~l---  152 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-----------TTLGWNLIRFKDKTDVFNM---  152 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-----------CBTTGGGEEEECSCCGGGS---
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-----------ccCCCceEEeeCCcchhhc---
Confidence            4567789999999999999987743 455788999987642222110           0112233344433322222   


Q ss_pred             cCCCCCeeEEEEccccc----cccCCHHHHHHHHHHHHhhccCC--eEEEEEeCC
Q 027388          160 LADDAPFDICSCQFAMH----YSWSTEARARRALANVSALLRPG--GTFIGTMPD  208 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~----~~~~~~~~~~~~l~~~~~~lk~g--G~li~~~~~  208 (224)
                        ....+|+|+|..+..    .+  .......++.-+.++|+||  |.|++....
T Consensus       153 --~~~~~DvVLSDmApnsG~~~~--D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          153 --EVIPGDTLLCDIGESSPSIAV--EEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             --CCCCCSEEEECCCCCCSCHHH--HHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             --CCCCcCEEEecCccCCCChHH--HHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence              467899999998766    11  1111123577778899999  999998777

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.72  E-value=3e-08  Score=77.83  Aligned_cols=135  Identities=16%  Similarity=0.107  Sum_probs=81.3

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-------cC------CeEEEEeCCh---hHHH-----------HHHHhccCCc----
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-------KI------GYYVGIDIAE---GSIE-----------DCRTRYNGDA----  131 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-------~~------~~~~gvD~s~---~~~~-----------~a~~~~~~~~----  131 (224)
                      .++.+|||||+|+|..+..++..       ..      ..++++|..+   ..+.           .+++.+..-.    
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            35578999999999988775542       22      3799999776   4444           3333322100    


Q ss_pred             cccc-ccccCCCCeeEEeccccccccccccCCCCCeeEEEEcc-ccccccCCHHH--HHHHHHHHHhhccCCeEEEEEeC
Q 027388          132 DHHQ-RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEAR--ARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       132 ~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~-~l~~~~~~~~~--~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ..+. .-.....+++++.+|+.+............||+|+... +....    ++  ...++..+.++|+|||+|+..+.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~----p~lw~~~~l~~l~~~L~pGG~l~tysa  214 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKN----PDMWTQNLFNAMARLARPGGTLATFTS  214 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTC----GGGCCHHHHHHHHHHEEEEEEEEESCC
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccC----hhhcCHHHHHHHHHHcCCCcEEEEEeC
Confidence            0000 00011235788999987632110000013799999864 21111    12  35799999999999999885443


Q ss_pred             ChHHHHHHhhhcccc
Q 027388          208 DANVIIKKLREEHFC  222 (224)
Q Consensus       208 ~~~~~~~~~~~~gf~  222 (224)
                       ...+++.+.++||.
T Consensus       215 -a~~vrr~L~~aGF~  228 (257)
T 2qy6_A          215 -AGFVRRGLQEAGFT  228 (257)
T ss_dssp             -BHHHHHHHHHHTEE
T ss_pred             -CHHHHHHHHHCCCE
Confidence             35788899999985

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.72  E-value=1.8e-07  Score=77.24  Aligned_cols=121  Identities=12%  Similarity=0.019  Sum_probs=70.3

Q ss_pred             CCeEEEecCCCchhHHHHHhh------------------cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeE
Q 027388           85 GDVVLDLACGKGGDLIKWDKA------------------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL  146 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~------------------~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~  146 (224)
                      ..+|+|+||++|.++..+...                  ..-.++..|+...-....-+.+......-.+..+-..+..|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            578999999999988876542                  11257788987332222222211000000000000112355


Q ss_pred             EeccccccccccccCCCCCeeEEEEccccccccCCH-----------------------------------HHHHHHHHH
Q 027388          147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE-----------------------------------ARARRALAN  191 (224)
Q Consensus       147 ~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~-----------------------------------~~~~~~l~~  191 (224)
                      +.+....+=  ...++.+++|+|+++.++||+...+                                   .|...+|+.
T Consensus       133 ~~gvpgSFy--~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~  210 (384)
T 2efj_A          133 IGAMPGSFY--SRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI  210 (384)
T ss_dssp             EEECCSCTT--SCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhh--hccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            555433321  1112689999999999999973321                                   133445888


Q ss_pred             HHhhccCCeEEEEEeC
Q 027388          192 VSALLRPGGTFIGTMP  207 (224)
Q Consensus       192 ~~~~lk~gG~li~~~~  207 (224)
                      ..+.|+|||.+++++.
T Consensus       211 Ra~eL~pGG~mvl~~~  226 (384)
T 2efj_A          211 HSEELISRGRMLLTFI  226 (384)
T ss_dssp             HHHHEEEEEEEEEEEE
T ss_pred             HHHHhccCCeEEEEEe
Confidence            8999999999999854

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.66  E-value=2.3e-08  Score=83.31  Aligned_cols=77  Identities=18%  Similarity=0.088  Sum_probs=60.0

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccc--cCCCCeeEEeccccccccccccC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK--KFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ++.+|||+|||+|..+..++.. ..+|++||+|+.+++.|++++..        .  ++ .+++++++|+.+.... .  
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~--------~~~gl-~~i~~i~~Da~~~L~~-~--  159 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPL--------LLNEG-KDVNILTGDFKEYLPL-I--  159 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHH--------HSCTT-CEEEEEESCGGGSHHH-H--
T ss_pred             CCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHH--------hccCC-CcEEEEECcHHHhhhh-c--
Confidence            4789999999999999888754 56999999999999999999762        2  23 4699999999874210 0  


Q ss_pred             CCCCeeEEEEcc
Q 027388          162 DDAPFDICSCQF  173 (224)
Q Consensus       162 ~~~~~D~i~~~~  173 (224)
                      ....||+|++.-
T Consensus       160 ~~~~fDvV~lDP  171 (410)
T 3ll7_A          160 KTFHPDYIYVDP  171 (410)
T ss_dssp             HHHCCSEEEECC
T ss_pred             cCCCceEEEECC
Confidence            125899999863

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.64  E-value=1.6e-07  Score=73.88  Aligned_cols=86  Identities=15%  Similarity=0.134  Sum_probs=66.9

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..++..+.+.++..+||.+||.|+++..+++. .++|+|+|.++.+++.|++ +.            ..++.++++++.
T Consensus        11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~------------~~rv~lv~~~f~   76 (285)
T 1wg8_A           11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LH------------LPGLTVVQGNFR   76 (285)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TC------------CTTEEEEESCGG
T ss_pred             HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hc------------cCCEEEEECCcc
Confidence            344566666778899999999999999999876 6699999999999999998 76            146999999998


Q ss_pred             ccccccccCCCCCeeEEEEc
Q 027388          153 EVHLDKVLADDAPFDICSCQ  172 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~  172 (224)
                      ++.........+++|.|++.
T Consensus        77 ~l~~~L~~~g~~~vDgIL~D   96 (285)
T 1wg8_A           77 HLKRHLAALGVERVDGILAD   96 (285)
T ss_dssp             GHHHHHHHTTCSCEEEEEEE
T ss_pred             hHHHHHHHcCCCCcCEEEeC
Confidence            87521100023579999964

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.59  E-value=2.3e-07  Score=75.90  Aligned_cols=114  Identities=11%  Similarity=0.051  Sum_probs=79.4

Q ss_pred             CCCeEEEecCCCchhHHHHHhh---------------c--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeE
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA---------------K--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL  146 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~---------------~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~  146 (224)
                      ...+|+|+||++|.++..+...               .  .-.++..|+..+....+.+.+.... .       ..+..|
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~-------~~~~~f  122 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-D-------VDGVCF  122 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-S-------CTTCEE
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-c-------cCCCEE
Confidence            3467999999999987754332               1  1358899999999999998887321 0       002344


Q ss_pred             EeccccccccccccCCCCCeeEEEEccccccccCC-----------------------------HHHHHHHHHHHHhhcc
Q 027388          147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST-----------------------------EARARRALANVSALLR  197 (224)
Q Consensus       147 ~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~-----------------------------~~~~~~~l~~~~~~lk  197 (224)
                      +.+....+-  ...++.+++|+|+++.++||+...                             ..|...+|+...+.|+
T Consensus       123 ~~gvpgSFy--~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~  200 (359)
T 1m6e_X          123 INGVPGSFY--GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV  200 (359)
T ss_dssp             EEEEESCSS--SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC
T ss_pred             EEecchhhh--hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            444333221  111268999999999999998331                             2366778999999999


Q ss_pred             CCeEEEEEeC
Q 027388          198 PGGTFIGTMP  207 (224)
Q Consensus       198 ~gG~li~~~~  207 (224)
                      |||.+++++.
T Consensus       201 pGG~mvl~~~  210 (359)
T 1m6e_X          201 PGGRMVLTIL  210 (359)
T ss_dssp             TTCEEEEEEE
T ss_pred             CCceEEEEEe
Confidence            9999998743

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.57  E-value=2.1e-08  Score=78.66  Aligned_cols=91  Identities=9%  Similarity=-0.072  Sum_probs=61.2

Q ss_pred             hhcCC--CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccccc-CCCCeeEEeccccccccc
Q 027388           81 YARRG--DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCYEVHLD  157 (224)
Q Consensus        81 ~~~~~--~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~  157 (224)
                      ...++  .+|||+|||+|..+..++..+ ++|++||.++.+.+.+++.+..- ..|....+ +..+++++++|+.++...
T Consensus        83 ~l~~g~~~~VLDl~~G~G~dal~lA~~g-~~V~~vE~~~~~~~l~~~~l~~a-~~~~~~~~~l~~~i~~~~~D~~~~L~~  160 (258)
T 2oyr_A           83 GIKGDYLPDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARG-YADAEIGGWLQERLQLIHASSLTALTD  160 (258)
T ss_dssp             TCBTTBCCCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHH-HHCTTTHHHHHHHEEEEESCHHHHSTT
T ss_pred             cccCCCCCEEEEcCCcCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHH-HhhHhhhhhhhcCEEEEECCHHHHHHh
Confidence            34556  899999999999999988664 48999999998766665554310 00000111 224689999998764211


Q ss_pred             cccCCCCCeeEEEEcccccc
Q 027388          158 KVLADDAPFDICSCQFAMHY  177 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~  177 (224)
                          ....||+|++.-.+.+
T Consensus       161 ----~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          161 ----ITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             ----CSSCCSEEEECCCCCC
T ss_pred             ----CcccCCEEEEcCCCCC
Confidence                1247999999876654

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.57  E-value=7.3e-07  Score=76.99  Aligned_cols=149  Identities=17%  Similarity=0.151  Sum_probs=97.2

Q ss_pred             cCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--------------cCCeEEEEeCChhHHHHHHH
Q 027388           60 ASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------------KIGYYVGIDIAEGSIEDCRT  125 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--------------~~~~~~gvD~s~~~~~~a~~  125 (224)
                      ...+++++.+..++..+   +.+.++.+|+|.+||+|.++......              ....++|+|+++.+...|+.
T Consensus       196 ~GqfyTP~~Vv~lmv~l---~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~m  272 (530)
T 3ufb_A          196 SGEFYTPRPVVRFMVEV---MDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQM  272 (530)
T ss_dssp             CCCCCCCHHHHHHHHHH---HCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHH
T ss_pred             CceECCcHHHHHHHHHh---hccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHH
Confidence            45677888876655443   44567789999999999998876532              12469999999999999988


Q ss_pred             hccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcccccccc------------CCHHHHHHHHHHHH
Q 027388          126 RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW------------STEARARRALANVS  193 (224)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~------------~~~~~~~~~l~~~~  193 (224)
                      ++.        .++.. ...+.++|....+..... ....||+|+++-.+.--+            ...+....++..+.
T Consensus       273 Nl~--------lhg~~-~~~I~~~dtL~~~~~~~~-~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l  342 (530)
T 3ufb_A          273 NLL--------LHGLE-YPRIDPENSLRFPLREMG-DKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIM  342 (530)
T ss_dssp             HHH--------HHTCS-CCEEECSCTTCSCGGGCC-GGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHH
T ss_pred             HHH--------hcCCc-cccccccccccCchhhhc-ccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHH
Confidence            765        12222 245667776654432111 245799999986553210            11112345778888


Q ss_pred             hhcc-------CCeEEEEEeCCh--------HHHHHHhhhccc
Q 027388          194 ALLR-------PGGTFIGTMPDA--------NVIIKKLREEHF  221 (224)
Q Consensus       194 ~~lk-------~gG~li~~~~~~--------~~~~~~~~~~gf  221 (224)
                      +.|+       +||++.+.+|+.        ..+++.|-+.+.
T Consensus       343 ~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~~~  385 (530)
T 3ufb_A          343 RKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKNFN  385 (530)
T ss_dssp             HHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHHSE
T ss_pred             HHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhcCE
Confidence            8886       699988887742        246666665553

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.53  E-value=7.1e-07  Score=73.20  Aligned_cols=121  Identities=20%  Similarity=0.167  Sum_probs=81.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++++||=||.|.|..+..+++....+++.||+++..++.|++.+....... -...-..+++++.+|...+-..... .
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~-~d~pr~~rv~vii~Da~~fl~~~~~-~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV-LDNLKGDCYQVLIEDCIPVLKRYAK-E  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----C-CSSSEETTEEEEESCHHHHHHHHHH-H
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhh-hccccccceeeehHHHHHHHHhhhh-c
Confidence            3578999999999999999987666789999999999999999875210000 0001123578899997654310000 2


Q ss_pred             CCCeeEEEEcccccccc------CCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          163 DAPFDICSCQFAMHYSW------STEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~------~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .+.||+|+....-....      ...--...+++.+++.|+|||+++..
T Consensus       282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            46899999764211000      01122467889999999999999874

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.52  E-value=7.5e-07  Score=73.04  Aligned_cols=120  Identities=16%  Similarity=0.128  Sum_probs=83.7

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      +.+.++.+|||+++|.|+-+..++... .+.++++|+++..+...++++...+..   ......++.+...|...++.. 
T Consensus       144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~---~~~~~~~v~v~~~D~~~~~~~-  219 (359)
T 4fzv_A          144 LGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPE---EIRDGNQVRVTSWDGRKWGEL-  219 (359)
T ss_dssp             HCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCT---TTTTSSSEEEECCCGGGHHHH-
T ss_pred             hCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhh---hhccCCceEEEeCchhhcchh-
Confidence            456788999999999999998887653 347999999999999988887522111   011234678888888765421 


Q ss_pred             ccCCCCCeeEEEEc----cc----cc------cccCCH-------HHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          159 VLADDAPFDICSCQ----FA----MH------YSWSTE-------ARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       159 ~~~~~~~~D~i~~~----~~----l~------~~~~~~-------~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                         ..+.||.|++.    +.    +.      +-+ ..       .-+..+|....+.|||||+|+.+|.
T Consensus       220 ---~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~-~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTC  285 (359)
T 4fzv_A          220 ---EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRS-RKKERQILPVLQVQLLAAGLLATKPGGHVVYSTC  285 (359)
T ss_dssp             ---STTCEEEEEEECCCCCHHHHTTCCTTCTTSGG-GHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             ---ccccCCEEEECCccCCCCCcccccChhhhhhC-CHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence               35789999953    21    10      000 11       1245788899999999999998866

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.52  E-value=3.8e-07  Score=71.88  Aligned_cols=108  Identities=17%  Similarity=0.170  Sum_probs=67.8

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++.+||||||++|.|+..+++. ....++|+|+...+.....  ..         .....++.....++.-..+    
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~--~~---------~~~~~~iv~~~~~~di~~l----  143 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPI--HM---------QTLGWNIVKFKDKSNVFTM----  143 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCC--CC---------CBTTGGGEEEECSCCTTTS----
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccc--cc---------cccCCceEEeecCceeeec----
Confidence            457889999999999999998864 4457889999764311100  00         0011123333333221222    


Q ss_pred             CCCCCeeEEEEccccccccCCHHH-----HHHHHHHHHhhccCC-eEEEEEeCC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEAR-----ARRALANVSALLRPG-GTFIGTMPD  208 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~-----~~~~l~~~~~~lk~g-G~li~~~~~  208 (224)
                       ....+|+|+|..+.. .  +...     ...++.-+.++|+|| |.|++....
T Consensus       144 -~~~~~DlVlsD~APn-s--G~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          144 -PTEPSDTLLCDIGES-S--SNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             -CCCCCSEEEECCCCC-C--SSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             -CCCCcCEEeecCcCC-C--CCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence             357899999987765 1  1111     133477778999999 999998776

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.50  E-value=2.3e-06  Score=67.77  Aligned_cols=109  Identities=14%  Similarity=0.075  Sum_probs=79.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh------cCCeEEEEeCChh--------------------------HHHHHHHhccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEG--------------------------SIEDCRTRYNGD  130 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~------~~~~~~gvD~s~~--------------------------~~~~a~~~~~~~  130 (224)
                      ..++.|||+|+..|.-+..++..      ...+++++|..+.                          .++.+++++.  
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~--  182 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFR--  182 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHH--
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHH--
Confidence            45789999999999977776542      2568999996422                          3566777766  


Q ss_pred             cccccccccC-CCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          131 ADHHQRRKKF-SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       131 ~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                            ..++ ..+++++.+++.+.... .  +.++||+|+...-.+      .....++..+...|+|||++++.-..
T Consensus       183 ------~~gl~~~~I~li~Gda~etL~~-~--~~~~~d~vfIDaD~y------~~~~~~Le~~~p~L~pGGiIv~DD~~  246 (282)
T 2wk1_A          183 ------NYDLLDEQVRFLPGWFKDTLPT-A--PIDTLAVLRMDGDLY------ESTWDTLTNLYPKVSVGGYVIVDDYM  246 (282)
T ss_dssp             ------HTTCCSTTEEEEESCHHHHSTT-C--CCCCEEEEEECCCSH------HHHHHHHHHHGGGEEEEEEEEESSCT
T ss_pred             ------HcCCCcCceEEEEeCHHHHHhh-C--CCCCEEEEEEcCCcc------ccHHHHHHHHHhhcCCCEEEEEcCCC
Confidence                  3344 36799999998654221 1  346899999876432      44668899999999999999997544

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.45  E-value=2.2e-06  Score=70.00  Aligned_cols=113  Identities=14%  Similarity=0.093  Sum_probs=73.6

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      +.++.++||+||++|+++..+++. ...|++||+.+ |-.....               ..+|.++++|......     
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~-l~~~l~~---------------~~~V~~~~~d~~~~~~-----  266 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGP-MAQSLMD---------------TGQVTWLREDGFKFRP-----  266 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSC-CCHHHHT---------------TTCEEEECSCTTTCCC-----
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhh-cChhhcc---------------CCCeEEEeCccccccC-----
Confidence            468999999999999999998765 45999999865 2222211               3358999999877664     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE-EEeCC----------hHHHHHHhhhccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI-GTMPD----------ANVIIKKLREEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li-~~~~~----------~~~~~~~~~~~gf  221 (224)
                      ....||+|+|..+..     .......+..+......++.++ +..+-          ...+...|+..||
T Consensus       267 ~~~~~D~vvsDm~~~-----p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~  332 (375)
T 4auk_A          267 TRSNISWMVCDMVEK-----PAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGI  332 (375)
T ss_dssp             CSSCEEEEEECCSSC-----HHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCcCEEEEcCCCC-----hHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCc
Confidence            457899999988764     2344444444444444444333 33332          2344455666665

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.43  E-value=8.7e-07  Score=68.41  Aligned_cols=113  Identities=21%  Similarity=0.211  Sum_probs=66.6

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCe---eEEec-cccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA---RLICG-DCYEVH  155 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v---~~~~~-d~~~~~  155 (224)
                      .++++.+|||+||+.|.|+...+.. ....+.|.++.... .    ...        .......+   .+.++ |+.++ 
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~----~~P--------~~~~~~Gv~~i~~~~G~Df~~~-  135 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H----EEP--------MLMQSYGWNIVTMKSGVDVFYK-  135 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S----CCC--------CCCCSTTGGGEEEECSCCGGGS-
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c----cCC--------CcccCCCceEEEeeccCCccCC-
Confidence            4678899999999999999988754 12233344433321 0    000        11111223   44546 88763 


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHH---HHHHHHHhhccCCe-EEEEEeCCh--HHHHH
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARAR---RALANVSALLRPGG-TFIGTMPDA--NVIIK  214 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~---~~l~~~~~~lk~gG-~li~~~~~~--~~~~~  214 (224)
                            ....+|+|+|..+-. --...-|..   .+|.-+.++|+||| .|++.....  ..+.+
T Consensus       136 ------~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~  193 (269)
T 2px2_A          136 ------PSEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIE  193 (269)
T ss_dssp             ------CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHH
T ss_pred             ------CCCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHH
Confidence                  246899999987543 100111211   25666778999999 999887664  55544

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.35  E-value=6.1e-06  Score=64.86  Aligned_cols=124  Identities=19%  Similarity=0.252  Sum_probs=76.4

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-cccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~  153 (224)
                      +.....+.++.+||||||++|.++..++.. +...|+|+|+-..-.+.  ....+       +.++ ..+.+..+ |+..
T Consensus        86 i~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~--P~~~~-------ql~w-~lV~~~~~~Dv~~  155 (321)
T 3lkz_A           86 LVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE--PQLVQ-------SYGW-NIVTMKSGVDVFY  155 (321)
T ss_dssp             HHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC--CCCCC-------BTTG-GGEEEECSCCTTS
T ss_pred             HHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC--cchhh-------hcCC-cceEEEeccCHhh
Confidence            344444567889999999999999977654 44579999987742110  00000       0111 22777777 7755


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHH---HHHHHHHhhccCC-eEEEEEeCCh--HHHHHHhh
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARAR---RALANVSALLRPG-GTFIGTMPDA--NVIIKKLR  217 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~---~~l~~~~~~lk~g-G~li~~~~~~--~~~~~~~~  217 (224)
                      ++       ...+|+|+|... +--..+.-+..   .+|.-+.+.|++| |.|++....+  ..+.+.++
T Consensus       156 l~-------~~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~  217 (321)
T 3lkz_A          156 RP-------SECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKME  217 (321)
T ss_dssp             SC-------CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHH
T ss_pred             CC-------CCCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHH
Confidence            54       367999999765 32111122222   2566667889998 8999886665  55545444

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.20  E-value=2e-05  Score=60.04  Aligned_cols=114  Identities=18%  Similarity=0.166  Sum_probs=71.1

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-cccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~  153 (224)
                      +.....+.++.+|||+||++|.++...+.. +...|+++|+-..-.+.  ....        +.-..+.++|..+ |+..
T Consensus        70 i~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~--P~~~--------~s~gwn~v~fk~gvDv~~  139 (267)
T 3p8z_A           70 FVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE--PVPM--------STYGWNIVKLMSGKDVFY  139 (267)
T ss_dssp             HHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC--CCCC--------CCTTTTSEEEECSCCGGG
T ss_pred             HHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC--cchh--------hhcCcCceEEEeccceee
Confidence            333335567889999999999999977654 45579999987632210  0000        0111235899988 8754


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHH---HHHHHHHHhhccCCeEEEEEeCC
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARA---RRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~---~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      .+       ..++|.|+|...-.. ..+.-+.   ..+|.-+.+.|++ |.+++....
T Consensus       140 ~~-------~~~~DtllcDIgeSs-~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~  188 (267)
T 3p8z_A          140 LP-------PEKCDTLLCDIGESS-PSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLN  188 (267)
T ss_dssp             CC-------CCCCSEEEECCCCCC-SCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred             cC-------CccccEEEEecCCCC-CChhhhhhHHHHHHHHHHHhccc-CCEEEEEcc
Confidence            43       467999999765311 0111222   2256666788988 788877443

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.14  E-value=3.3e-06  Score=59.64  Aligned_cols=86  Identities=14%  Similarity=0.010  Sum_probs=57.6

Q ss_pred             cCCCeEEEecCCCc-hhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKG-GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G-~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+.+|||||||.| ..+..+++.....|+++|+++..++                        +++.|+.+-...    
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~------------------------~v~dDiF~P~~~----   85 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG------------------------IVRDDITSPRME----   85 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT------------------------EECCCSSSCCHH----
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc------------------------eEEccCCCCccc----
Confidence            45679999999999 5888887645568999999984333                        566776543221    


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .-..||+|.+...       ..++...+.++.+...  .-++|.
T Consensus        86 ~Y~~~DLIYsirP-------P~El~~~i~~lA~~v~--adliI~  120 (153)
T 2k4m_A           86 IYRGAALIYSIRP-------PAEIHSSLMRVADAVG--ARLIIK  120 (153)
T ss_dssp             HHTTEEEEEEESC-------CTTTHHHHHHHHHHHT--CEEEEE
T ss_pred             ccCCcCEEEEcCC-------CHHHHHHHHHHHHHcC--CCEEEE
Confidence            0158999987653       2455566666665443  455554

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.89  E-value=4.5e-05  Score=61.42  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=65.1

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      +..++..+.+.++..++|..||.|+++..+++.  ..++|+|+|.++.+++.++ ++.            ..++++++++
T Consensus        46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~------------~~Rv~lv~~n  112 (347)
T 3tka_A           46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID------------DPRFSIIHGP  112 (347)
T ss_dssp             THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC------------CTTEEEEESC
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc------------CCcEEEEeCC
Confidence            444666666778999999999999999999875  3568999999999999994 543            4568999999


Q ss_pred             ccccccccccC-CCCCeeEEEEcc
Q 027388          151 CYEVHLDKVLA-DDAPFDICSCQF  173 (224)
Q Consensus       151 ~~~~~~~~~~~-~~~~~D~i~~~~  173 (224)
                      +.++....... ..+++|.|+...
T Consensus       113 F~~l~~~L~~~g~~~~vDgILfDL  136 (347)
T 3tka_A          113 FSALGEYVAERDLIGKIDGILLDL  136 (347)
T ss_dssp             GGGHHHHHHHTTCTTCEEEEEEEC
T ss_pred             HHHHHHHHHhcCCCCcccEEEECC
Confidence            88764210000 113699998653

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.89  E-value=2.8e-05  Score=62.17  Aligned_cols=54  Identities=22%  Similarity=0.311  Sum_probs=43.4

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ++.++... ..++..|||++||+|..+..++. ...+++|+|+++.+++.|++++.
T Consensus       225 ~~~~i~~~-~~~~~~vlD~f~GsGt~~~~a~~-~g~~~~g~e~~~~~~~~a~~r~~  278 (297)
T 2zig_A          225 AERLVRMF-SFVGDVVLDPFAGTGTTLIAAAR-WGRRALGVELVPRYAQLAKERFA  278 (297)
T ss_dssp             HHHHHHHH-CCTTCEEEETTCTTTHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHh-CCCCCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHH
Confidence            44444333 36788999999999999988764 44699999999999999999976

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.75  E-value=0.00019  Score=56.45  Aligned_cols=100  Identities=15%  Similarity=0.139  Sum_probs=64.8

Q ss_pred             hcCCCeEEEecC------CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           82 ARRGDVVLDLAC------GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        82 ~~~~~~iLDiGc------G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      .+.+.+|||+|+      ..|.+...-.....+.++++|+.+-.                   . .. -.++++|.....
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~-------------------s-da-~~~IqGD~~~~~  165 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFV-------------------S-DA-DSTLIGDCATVH  165 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCB-------------------C-SS-SEEEESCGGGEE
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccc-------------------c-CC-CeEEEccccccc
Confidence            457899999996      66774332211222489999997711                   0 11 245899976544


Q ss_pred             cccccCCCCCeeEEEEccccc---ccc----CCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          156 LDKVLADDAPFDICSCQFAMH---YSW----STEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~---~~~----~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      .      ..+||+|++..+-.   +..    .+..-.+.++.-+.+.|+|||.|++....
T Consensus       166 ~------~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQ  219 (344)
T 3r24_A          166 T------ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE  219 (344)
T ss_dssp             E------SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             c------CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEec
Confidence            3      58899999876422   110    01123567778888999999999998553

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.72  E-value=0.00065  Score=56.05  Aligned_cols=122  Identities=15%  Similarity=0.144  Sum_probs=79.7

Q ss_pred             CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc---cCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV---LAD  162 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~  162 (224)
                      .+++|+.||.|.+...+...++..+.++|+++.+++..+.++.              ...++++|+.++.....   ...
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~--------------~~~~~~~DI~~~~~~~~~~~~~~   68 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP--------------RSLHVQEDVSLLNAEIIKGFFKN   68 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT--------------TSEEECCCGGGCCHHHHHHHHCS
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC--------------CCceEecChhhcCHHHHHhhccc
Confidence            5799999999999999877777778899999999999988865              25678888887643211   002


Q ss_pred             CCCeeEEEEcccccccc--------CCHHHHHHHHHHHHhhccCCeEEEEEeCC---------hHHHHHHhhhcccc
Q 027388          163 DAPFDICSCQFAMHYSW--------STEARARRALANVSALLRPGGTFIGTMPD---------ANVIIKKLREEHFC  222 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~--------~~~~~~~~~l~~~~~~lk~gG~li~~~~~---------~~~~~~~~~~~gf~  222 (224)
                      ...+|+|+....-+-+.        +....+...+-++.+.++|.-+++=.++.         ...+. .|.+.||.
T Consensus        69 ~~~~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~  144 (376)
T 3g7u_A           69 DMPIDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYD  144 (376)
T ss_dssp             CCCCCEEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEE
T ss_pred             CCCeeEEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCc
Confidence            46899999665322210        00112222334555667886665544443         23455 77777763

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.70  E-value=0.00016  Score=59.10  Aligned_cols=71  Identities=15%  Similarity=0.137  Sum_probs=55.3

Q ss_pred             HHHHHHHHhhc------CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCee
Q 027388           73 IKSVLVQLYAR------RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR  145 (224)
Q Consensus        73 ~~~~~~~~~~~------~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~  145 (224)
                      +..++..+.+.      ++..|||||.|.|.++..++.. ...+++++|+++.++...++.+.            ..+++
T Consensus        41 ~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~------------~~~l~  108 (353)
T 1i4w_A           41 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------------GSPLQ  108 (353)
T ss_dssp             HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------------TSSCE
T ss_pred             HHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhcc------------CCCEE
Confidence            44455554443      3589999999999999999864 35689999999999999887653            34689


Q ss_pred             EEeccccccc
Q 027388          146 LICGDCYEVH  155 (224)
Q Consensus       146 ~~~~d~~~~~  155 (224)
                      ++.+|+..++
T Consensus       109 ii~~D~l~~~  118 (353)
T 1i4w_A          109 ILKRDPYDWS  118 (353)
T ss_dssp             EECSCTTCHH
T ss_pred             EEECCccchh
Confidence            9999997654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.64  E-value=0.00024  Score=57.92  Aligned_cols=122  Identities=15%  Similarity=0.184  Sum_probs=76.5

Q ss_pred             CCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           85 GDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ..+++|+.||.|.+...+...+  ...++++|+++.+++..+.++.              ...++++|+.++.....  +
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~--------------~~~~~~~Di~~~~~~~~--~   65 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP--------------HTQLLAKTIEGITLEEF--D   65 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------------TSCEECSCGGGCCHHHH--H
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc--------------ccccccCCHHHccHhHc--C
Confidence            3579999999999999887666  4578899999999999999876              24567888877643211  1


Q ss_pred             CCCeeEEEEccccccccC-----CHHH-HHHHHH---HHHhhcc--CCeEEEEEeCC------hHHHHHHhhhcccc
Q 027388          163 DAPFDICSCQFAMHYSWS-----TEAR-ARRALA---NVSALLR--PGGTFIGTMPD------ANVIIKKLREEHFC  222 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~-----~~~~-~~~~l~---~~~~~lk--~gG~li~~~~~------~~~~~~~~~~~gf~  222 (224)
                      ...+|+|+....-+-+..     ...+ ...++.   ++.+.++  |.-+++=.++.      ...+...|.+.||.
T Consensus        66 ~~~~D~l~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~  142 (343)
T 1g55_A           66 RLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQ  142 (343)
T ss_dssp             HHCCSEEEECCC------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEE
T ss_pred             cCCcCEEEEcCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCCe
Confidence            126899997654222100     0011 112333   4445556  76555534443      35677788888863

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.62  E-value=0.00017  Score=56.73  Aligned_cols=121  Identities=8%  Similarity=-0.101  Sum_probs=85.7

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      .+..+||+=+|+|.++++++. ...+++.+|.++..++..++++..           ..+++++..|....... ...+.
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~-----------~~~~~V~~~D~~~~L~~-l~~~~  157 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF-----------NKKVYVNHTDGVSKLNA-LLPPP  157 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT-----------TSCEEEECSCHHHHHHH-HCSCT
T ss_pred             cCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc-----------CCcEEEEeCcHHHHHHH-hcCCC
Confidence            466789999999999999876 447999999999999999998861           35689999996542211 11134


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHh--hccCCeEEEEEeC-----ChHHHHHHhhhccc
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMP-----DANVIIKKLREEHF  221 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~--~lk~gG~li~~~~-----~~~~~~~~~~~~gf  221 (224)
                      ..||+|++.-..+.    ..+...++..+.+  .+.++|++++=.|     ....+.+.+++.|.
T Consensus       158 ~~fdLVfiDPPYe~----k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~  218 (283)
T 2oo3_A          158 EKRGLIFIDPSYER----KEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS  218 (283)
T ss_dssp             TSCEEEEECCCCCS----TTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS
T ss_pred             CCccEEEECCCCCC----CcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC
Confidence            57999999876652    1356666666665  4568898887555     23556666655553

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.59  E-value=0.002  Score=51.68  Aligned_cols=115  Identities=12%  Similarity=0.002  Sum_probs=80.8

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc---
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL---  160 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---  160 (224)
                      ....|++||||--.....+.......++=|| -+..++..++.+...+      .....+..++.+|+.+ .+....   
T Consensus       102 g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~------~~~~~~~~~v~~Dl~d-~~~~~l~~~  173 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHG------VTPTADRREVPIDLRQ-DWPPALRSA  173 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTT------CCCSSEEEEEECCTTS-CHHHHHHHT
T ss_pred             CCCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcC------CCCCCCeEEEecchHh-hHHHHHHhc
Confidence            4468999999987766554322235788999 4888888887775211      1124557889999876 321111   


Q ss_pred             -CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 -ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 -~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                       +....--++++-++++|+  +.++...+++.+...+.||+.|++...+
T Consensus       174 g~d~~~Pt~~i~Egvl~Yl--~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          174 GFDPSARTAWLAEGLLMYL--PATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             TCCTTSCEEEEECSCGGGS--CHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             cCCCCCCEEEEEechHhhC--CHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence             122455677788899998  6778899999999999999999998654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.57  E-value=2.6e-05  Score=78.18  Aligned_cols=102  Identities=16%  Similarity=0.117  Sum_probs=52.7

Q ss_pred             CCCeEEEecCCCchhHHHHHhh------cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc-cc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HL  156 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~------~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~  156 (224)
                      +..+|||||.|+|..+..++..      ...+|+.+|+|+.+.+.+++++..            ..+.....|.... +.
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~------------~di~~~~~d~~~~~~~ 1307 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ------------LHVTQGQWDPANPAPG 1307 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH------------HTEEEECCCSSCCCC-
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh------------cccccccccccccccC
Confidence            4579999999999876655432      134789999999988888877651            1122211122111 11


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                           ....||+|++..++|-.    .+....+.+++++|+|||.+++..
T Consensus      1308 -----~~~~ydlvia~~vl~~t----~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1308 -----SLGKADLLVCNCALATL----GDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             ---------CCEEEEECC------------------------CCEEEEEE
T ss_pred             -----CCCceeEEEEccccccc----ccHHHHHHHHHHhcCCCcEEEEEe
Confidence                 24579999999999743    678889999999999999988764

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.48  E-value=0.0061  Score=49.39  Aligned_cols=118  Identities=14%  Similarity=0.096  Sum_probs=79.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCccccc------------ccccCCCCeeEEec
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQ------------RRKKFSFPARLICG  149 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~------------~~~~~~~~v~~~~~  149 (224)
                      .+...|+.+|||.......+... ....++-||. +..++.-++.+...+....            ...-...+.+++.+
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            45678999999999998888654 3446778887 6677776666552210000            00001356889999


Q ss_pred             ccccccc-----ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE-EE
Q 027388          150 DCYEVHL-----DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI-GT  205 (224)
Q Consensus       150 d~~~~~~-----~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li-~~  205 (224)
                      |+.+...     .... ......++++-+++.|+  +.+...++++.+.+.+ |+|.++ +.
T Consensus       175 DL~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL--~~~~~~~ll~~ia~~~-~~~~~v~~e  232 (334)
T 1rjd_A          175 DLNDITETTRLLDVCT-KREIPTIVISECLLCYM--HNNESQLLINTIMSKF-SHGLWISYD  232 (334)
T ss_dssp             CTTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGS--CHHHHHHHHHHHHHHC-SSEEEEEEE
T ss_pred             CCCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCC--CHHHHHHHHHHHHhhC-CCcEEEEEe
Confidence            9987533     1111 23567888888999998  8888999999999887 667654 44

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.46  E-value=0.0022  Score=51.69  Aligned_cols=118  Identities=13%  Similarity=0.079  Sum_probs=79.6

Q ss_pred             CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP  165 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  165 (224)
                      .+|||+-||.|.+...+...++..+.++|+++.+++..+.++.               -.++++|+.++....    -..
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~---------------~~~~~~DI~~i~~~~----~~~   61 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS---------------AKLIKGDISKISSDE----FPK   61 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC---------------SEEEESCGGGCCGGG----SCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC---------------CCcccCChhhCCHhh----CCc
Confidence            3799999999999998876777678899999999999988865               357789988876432    357


Q ss_pred             eeEEEEccccccc---------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC---------hHHHHHHhhhcccc
Q 027388          166 FDICSCQFAMHYS---------WSTEARARRALANVSALLRPGGTFIGTMPD---------ANVIIKKLREEHFC  222 (224)
Q Consensus       166 ~D~i~~~~~l~~~---------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---------~~~~~~~~~~~gf~  222 (224)
                      +|+++....-+-+         .+....+-..+-++.+.++|.-+++=.++.         ...+...|.+.||.
T Consensus        62 ~D~l~ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~  136 (331)
T 3ubt_Y           62 CDGIIGGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYD  136 (331)
T ss_dssp             CSEEECCCCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEE
T ss_pred             ccEEEecCCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeEEEeeeecccccccccchhhhhhhhhccCCcE
Confidence            8999854321111         112223333344566667886554433442         35677788888863

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.44  E-value=0.0018  Score=52.35  Aligned_cols=119  Identities=15%  Similarity=0.167  Sum_probs=78.2

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      .+.+++|+.||.|.+...+...+...++++|+++..++..+.++..              ..  ++|+.++....    .
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~--------------~~--~~Di~~~~~~~----~   69 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--------------KP--EGDITQVNEKT----I   69 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--------------CC--BSCGGGSCGGG----S
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC--------------CC--cCCHHHcCHhh----C
Confidence            3578999999999999998777777788999999999999988761              11  67777665321    2


Q ss_pred             CCeeEEEEccccccc---------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC---------hHHHHHHhhhcccc
Q 027388          164 APFDICSCQFAMHYS---------WSTEARARRALANVSALLRPGGTFIGTMPD---------ANVIIKKLREEHFC  222 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~---------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---------~~~~~~~~~~~gf~  222 (224)
                      ..+|+|+.....+-+         .+....+-..+.++.+.++|.-+++=.++.         ...+...|++.||.
T Consensus        70 ~~~D~l~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~  146 (327)
T 2c7p_A           70 PDHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYS  146 (327)
T ss_dssp             CCCSEEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBC
T ss_pred             CCCCEEEECCCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCE
Confidence            368999966422221         011111223344455567886555444443         24577788888874

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.32  E-value=0.0022  Score=51.16  Aligned_cols=124  Identities=15%  Similarity=0.061  Sum_probs=72.9

Q ss_pred             cCCCeEEEecCCCchhHHHHHh----hc-CC--eEEEEeCCh------------hHHHHHHHhccCCcccccccccCCCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDK----AK-IG--YYVGIDIAE------------GSIEDCRTRYNGDADHHQRRKKFSFP  143 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~----~~-~~--~~~gvD~s~------------~~~~~a~~~~~~~~~~~~~~~~~~~~  143 (224)
                      .+.-+|||+|-|+|-+......    .. ..  +++.+|..+            ...+........       -......
T Consensus        95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~-------~~~~~v~  167 (308)
T 3vyw_A           95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPE-------YEGERLS  167 (308)
T ss_dssp             CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSE-------EECSSEE
T ss_pred             CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCcc-------ccCCcEE
Confidence            3446899999999987654322    12 22  356666421            111111111110       0111223


Q ss_pred             eeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHH----HHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhc
Q 027388          144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARA----RRALANVSALLRPGGTFIGTMPDANVIIKKLREE  219 (224)
Q Consensus       144 v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~----~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~  219 (224)
                      +.+..+|+.+.-. ..  ....||+|+....-     +...+    ..+++.+.++++|||+|. +......+++.|.++
T Consensus       168 L~l~~GDa~~~l~-~l--~~~~~Da~flDgFs-----P~kNPeLWs~e~f~~l~~~~~pgg~la-TYtaag~VRR~L~~a  238 (308)
T 3vyw_A          168 LKVLLGDARKRIK-EV--ENFKADAVFHDAFS-----PYKNPELWTLDFLSLIKERIDEKGYWV-SYSSSLSVRKSLLTL  238 (308)
T ss_dssp             EEEEESCHHHHGG-GC--CSCCEEEEEECCSC-----TTTSGGGGSHHHHHHHHTTEEEEEEEE-ESCCCHHHHHHHHHT
T ss_pred             EEEEechHHHHHh-hh--cccceeEEEeCCCC-----cccCcccCCHHHHHHHHHHhCCCcEEE-EEeCcHHHHHHHHHC
Confidence            4677888765321 11  23579999976521     11222    579999999999999877 344557889999999


Q ss_pred             ccc
Q 027388          220 HFC  222 (224)
Q Consensus       220 gf~  222 (224)
                      ||.
T Consensus       239 GF~  241 (308)
T 3vyw_A          239 GFK  241 (308)
T ss_dssp             TCE
T ss_pred             CCE
Confidence            995

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.29  E-value=0.00063  Score=53.17  Aligned_cols=46  Identities=24%  Similarity=0.309  Sum_probs=40.3

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ..++..|||..||+|..+..... ...+++|+|+++..++.+++++.
T Consensus       210 ~~~~~~vlD~f~GsGtt~~~a~~-~gr~~ig~e~~~~~~~~~~~r~~  255 (260)
T 1g60_A          210 SNPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLN  255 (260)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHH
Confidence            46789999999999998887654 45699999999999999999976

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.20  E-value=0.0023  Score=51.74  Aligned_cols=122  Identities=12%  Similarity=0.190  Sum_probs=76.7

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcC--CeE-EEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKI--GYY-VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~--~~~-~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...+++|+.||.|.+...+...+.  ..+ .++|+++.+++..+.++..               .++++|+.++..... 
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~---------------~~~~~DI~~~~~~~i-   72 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE---------------EVQVKNLDSISIKQI-   72 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC---------------CCBCCCTTTCCHHHH-
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC---------------CcccCChhhcCHHHh-
Confidence            456899999999999998876653  557 7999999999999988761               256778877654322 


Q ss_pred             CCCCCeeEEEEccccccc--------cCCHHHHHHHHHHHHh----hc--cCCeEEEEEeCC------hHHHHHHhhhcc
Q 027388          161 ADDAPFDICSCQFAMHYS--------WSTEARARRALANVSA----LL--RPGGTFIGTMPD------ANVIIKKLREEH  220 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~--------~~~~~~~~~~l~~~~~----~l--k~gG~li~~~~~------~~~~~~~~~~~g  220 (224)
                       +...+|+++....-+.+        ....+....++.++.+    .+  +|.-+++=.+++      ...+.+.|++.|
T Consensus        73 -~~~~~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~~~G  151 (327)
T 3qv2_A           73 -ESLNCNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQ  151 (327)
T ss_dssp             -HHTCCCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHHHTT
T ss_pred             -ccCCCCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHHhCC
Confidence             12368999965432211        0001112234444444    45  565444433443      356788888888


Q ss_pred             cc
Q 027388          221 FC  222 (224)
Q Consensus       221 f~  222 (224)
                      |.
T Consensus       152 Y~  153 (327)
T 3qv2_A          152 YY  153 (327)
T ss_dssp             CE
T ss_pred             CE
Confidence            73

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=97.15  E-value=0.056  Score=41.95  Aligned_cols=166  Identities=10%  Similarity=0.084  Sum_probs=90.0

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceeh-hhhHHHHHHH-HHHHhhcCCCeEEEecCCCchhHHHHHhh------
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHL-KKLNNWIKSV-LVQLYARRGDVVLDLACGKGGDLIKWDKA------  105 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~iLDiGcG~G~~~~~l~~~------  105 (224)
                      .....+.+++.+.+...+.........-+.+.. ..+..++... +-.....-+..|+|+|+-.|.-+..++..      
T Consensus        17 ~~~~~~~~~l~~~~~~~~~~~~e~l~~~~~~~~~~~l~~~l~~~~l~~~i~~vpG~ivE~GV~rG~S~~~~a~~~~~l~~   96 (257)
T 3tos_A           17 PEETETTQRLTKLLTNSPIPTEELVNNLPLFLRRHQMTDLLSMDALYRQVLDVPGVIMEFGVRFGRHLGTFAALRGVYEP   96 (257)
T ss_dssp             HHHHHHHHHHHHHHHTCCSCGGGGGGCGGGGCCHHHHHHHHHHHHHHHHTTTSCSEEEEECCTTCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHhcCCCChHHHHHhHHhhhhHHHHHHHHHHHHHHHHhhCCCCeEEEEecccCHHHHHHHHHHHHhcc
Confidence            344456677777777655544333332222211 1121221111 11111245679999999999877765431      


Q ss_pred             --cCCeEEEEe-----CChhH-------------------HHHHHHhccCCccccccccc-CCCCeeEEecccccccccc
Q 027388          106 --KIGYYVGID-----IAEGS-------------------IEDCRTRYNGDADHHQRRKK-FSFPARLICGDCYEVHLDK  158 (224)
Q Consensus       106 --~~~~~~gvD-----~s~~~-------------------~~~a~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~  158 (224)
                        ...+++++|     +....                   .+...+.+..  ..+-..-+ ...++.++.+++.+....-
T Consensus        97 ~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~--~~~~~~~g~~~~~i~li~G~~~dTL~~~  174 (257)
T 3tos_A           97 YNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDA--HECSDFFGHVTQRSVLVEGDVRETVPRY  174 (257)
T ss_dssp             TCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHH--HHTTSTTTTSCCSEEEEESCHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHH--HhhhhhcCCCCCcEEEEEecHHHHHHHH
Confidence              246899999     33210                   0001110000  00000112 2467999999987643110


Q ss_pred             c-cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          159 V-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       159 ~-~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      . ..+...+|+++...-.+      ......+..+...|+|||++++...
T Consensus       175 l~~~~~~~~dlv~ID~D~Y------~~t~~~le~~~p~l~~GGvIv~DD~  218 (257)
T 3tos_A          175 LAENPQTVIALAYFDLDLY------EPTKAVLEAIRPYLTKGSIVAFDEL  218 (257)
T ss_dssp             HHHCTTCCEEEEEECCCCH------HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             HHhCCCCceEEEEEcCccc------chHHHHHHHHHHHhCCCcEEEEcCC
Confidence            0 01345799999876431      5567788999999999999999765

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.93  E-value=0.0052  Score=49.79  Aligned_cols=121  Identities=15%  Similarity=0.191  Sum_probs=76.3

Q ss_pred             CeEEEecCCCchhHHHHHhhcC--CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~~--~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      .+++|+.||.|.+...+...+.  ..+.++|+++..++..+.++.              ...++++|+.++.....  +.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~--------------~~~~~~~DI~~~~~~~~--~~   67 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP--------------ETNLLNRNIQQLTPQVI--KK   67 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------------TSCEECCCGGGCCHHHH--HH
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC--------------CCceeccccccCCHHHh--cc
Confidence            4799999999999988876554  457799999999999998876              13567788877654222  12


Q ss_pred             CCeeEEEEccccccc---------cCCHHHHHHHHHHHHhhcc-CCeEEEEEeCC------hHHHHHHhhhcccc
Q 027388          164 APFDICSCQFAMHYS---------WSTEARARRALANVSALLR-PGGTFIGTMPD------ANVIIKKLREEHFC  222 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~---------~~~~~~~~~~l~~~~~~lk-~gG~li~~~~~------~~~~~~~~~~~gf~  222 (224)
                      ..+|+++....-+-+         .+....+-..+-++.+.++ |.-+++=.+++      ...+.+.|++.||.
T Consensus        68 ~~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~  142 (333)
T 4h0n_A           68 WNVDTILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKGFENSTVRNLFIDKLKECNFI  142 (333)
T ss_dssp             TTCCEEEECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTTGGGSHHHHHHHHHHHHTTEE
T ss_pred             CCCCEEEecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchhhhhhhHHHHHHHHHHhCCCe
Confidence            368999865421111         0111111122334445555 75444444554      35777888888863

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.62  E-value=0.0033  Score=50.08  Aligned_cols=77  Identities=23%  Similarity=0.202  Sum_probs=51.5

Q ss_pred             CeeEEeccccccccccccCCCCCeeEEEEccccccccC--C--------------HHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS--T--------------EARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       143 ~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~--~--------------~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      .++++++|+.+... .  .+.++||+|+++-.....-.  .              ...+..++.++.++|+|||.+++..
T Consensus        21 ~~~i~~gD~~~~l~-~--l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~   97 (297)
T 2zig_A           21 VHRLHVGDAREVLA-S--FPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV   97 (297)
T ss_dssp             CEEEEESCHHHHHT-T--SCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEECcHHHHHh-h--CCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            46899999876321 0  14579999999865421100  0              0124567889999999999999886


Q ss_pred             CCh----------------HHHHHHhhhcccc
Q 027388          207 PDA----------------NVIIKKLREEHFC  222 (224)
Q Consensus       207 ~~~----------------~~~~~~~~~~gf~  222 (224)
                      .+.                ..+...+++.||.
T Consensus        98 ~d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~  129 (297)
T 2zig_A           98 GDVAVARRRFGRHLVFPLHADIQVRCRKLGFD  129 (297)
T ss_dssp             CCEEEECC----EEEECHHHHHHHHHHHTTCE
T ss_pred             CCCccccccCCcccccccHHHHHHHHHHcCCe
Confidence            642                3577788888873

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.58  E-value=0.0079  Score=49.28  Aligned_cols=98  Identities=12%  Similarity=0.083  Sum_probs=63.2

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--c
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (224)
                      ...++.+||-+|+|. |.++.++++.... +++++|.++..++.+++.-.               -.++...-.++.  .
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~~~~~  251 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA---------------THVINSKTQDPVAAI  251 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC---------------SEEEETTTSCHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC---------------CEEecCCccCHHHHH
Confidence            456789999999876 7777787765444 79999999999999876532               111211111110  0


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ...  ..+.+|+|+-.-..          ...+....+.|+++|.+++.
T Consensus       252 ~~~--~~gg~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          252 KEI--TDGGVNFALESTGS----------PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             HHH--TTSCEEEEEECSCC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred             HHh--cCCCCcEEEECCCC----------HHHHHHHHHHHhcCCEEEEe
Confidence            000  12379999854321          23567788999999998864

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.29  E-value=0.011  Score=47.08  Aligned_cols=76  Identities=24%  Similarity=0.272  Sum_probs=56.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCe--EEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGY--YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~--~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ....+++|+-||.|.+...+...++..  ++++|+++..++..+.+..              ...++.+|+.++......
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~--------------~~~~~~~DI~~i~~~~i~   79 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ--------------GKIMYVGDVRSVTQKHIQ   79 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT--------------TCEEEECCGGGCCHHHHH
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC--------------CCceeCCChHHccHHHhc
Confidence            356689999999999998887666655  6899999999988887754              235778888876542221


Q ss_pred             CCCCCeeEEEEcc
Q 027388          161 ADDAPFDICSCQF  173 (224)
Q Consensus       161 ~~~~~~D~i~~~~  173 (224)
                       ..+.+|+++...
T Consensus        80 -~~~~~Dll~ggp   91 (295)
T 2qrv_A           80 -EWGPFDLVIGGS   91 (295)
T ss_dssp             -HTCCCSEEEECC
T ss_pred             -ccCCcCEEEecC
Confidence             124799999654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.22  E-value=0.019  Score=46.36  Aligned_cols=99  Identities=14%  Similarity=0.093  Sum_probs=63.9

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+||-+|+|. |..+.++++....+++++|.++..++.+++.-.               -..+...-.+... ..
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~~i~~~~~~~~~-~~  226 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGA---------------EVAVNARDTDPAA-WL  226 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC---------------SEEEETTTSCHHH-HH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCC---------------CEEEeCCCcCHHH-HH
Confidence            456888999999876 778888887666699999999999998876432               1111111111100 00


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ....+.+|+|+..-..          ...+....+.|+++|.+++.
T Consensus       227 ~~~~g~~d~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          227 QKEIGGAHGVLVTAVS----------PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             HHHHSSEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HHhCCCCCEEEEeCCC----------HHHHHHHHHHhccCCEEEEe
Confidence            0012378998754321          23567788899999998864

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.21  E-value=0.042  Score=46.71  Aligned_cols=127  Identities=11%  Similarity=0.077  Sum_probs=77.1

Q ss_pred             CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc-----
Q 027388           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV-----  159 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----  159 (224)
                      ..+++|+-||.|++...+...++..+.++|+++..++..+.++..           .....++++|+.++.....     
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~-----------~p~~~~~~~DI~~i~~~~~~~~~~  156 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYC-----------DPATHHFNEDIRDITLSHQEGVSD  156 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCC-----------CTTTCEEESCTHHHHCTTCTTSCH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhccc-----------CCCcceeccchhhhhhccccccch
Confidence            468999999999999988766766688999999999998888631           1124567788876642110     


Q ss_pred             -------cCCCCCeeEEEEccccccccC-C-----------------HHHHHHHHHHHHhhccCCeEEEEEeCC------
Q 027388          160 -------LADDAPFDICSCQFAMHYSWS-T-----------------EARARRALANVSALLRPGGTFIGTMPD------  208 (224)
Q Consensus       160 -------~~~~~~~D~i~~~~~l~~~~~-~-----------------~~~~~~~l~~~~~~lk~gG~li~~~~~------  208 (224)
                             ......+|+++....-+-+.. .                 ...+-..+.++.+.++|.-+++=.+++      
T Consensus       157 ~~~~~~i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk~fvlENV~gl~s~~~  236 (482)
T 3me5_A          157 EAAAEHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPAMFVLENVKNLKSHDK  236 (482)
T ss_dssp             HHHHHHHHHHSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCCSEEEEEEETTTTTGGG
T ss_pred             hhHHhhhhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCCcEEEEeCcHHHhcccC
Confidence                   001246899986543222200 0                 001122233344556786555434543      


Q ss_pred             ---hHHHHHHhhhcccc
Q 027388          209 ---ANVIIKKLREEHFC  222 (224)
Q Consensus       209 ---~~~~~~~~~~~gf~  222 (224)
                         ...+...|.+.||.
T Consensus       237 g~~f~~i~~~L~~lGY~  253 (482)
T 3me5_A          237 GKTFRIIMQTLDELGYD  253 (482)
T ss_dssp             GHHHHHHHHHHHHTTEE
T ss_pred             CcHHHHHHHHHhcCCcE
Confidence               24567788888863

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.18  E-value=0.014  Score=46.93  Aligned_cols=47  Identities=11%  Similarity=0.212  Sum_probs=40.7

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ...++..|||.-||+|..+.... ....+++|+|+++..++.+++++.
T Consensus       249 ~~~~~~~VlDpF~GsGtt~~aa~-~~gr~~ig~e~~~~~~~~~~~r~~  295 (323)
T 1boo_A          249 LTEPDDLVVDIFGGSNTTGLVAE-RESRKWISFEMKPEYVAASAFRFL  295 (323)
T ss_dssp             HCCTTCEEEETTCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHGGGS
T ss_pred             hCCCCCEEEECCCCCCHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHH
Confidence            35688999999999998887765 445699999999999999999987

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.12  E-value=0.027  Score=50.12  Aligned_cols=132  Identities=15%  Similarity=0.203  Sum_probs=77.7

Q ss_pred             CCCeEEEecCCCchhHHHHHhhc---------C----CeEEEEeC---ChhHHHHHHHhccCCcc-----ccc-------
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAK---------I----GYYVGIDI---AEGSIEDCRTRYNGDAD-----HHQ-------  135 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~---------~----~~~~gvD~---s~~~~~~a~~~~~~~~~-----~~~-------  135 (224)
                      +.-+|+|+|.|+|...+.+.+..         .    -+++.+|.   +...+..+-+.+.....     ...       
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            45689999999999777654421         1    35889998   44444443322221000     000       


Q ss_pred             -ccccC---CCCeeEEecccccccccccc-CCCCCeeEEEEccccccccCCHHH----HHHHHHHHHhhccCCeEEEEEe
Q 027388          136 -RRKKF---SFPARLICGDCYEVHLDKVL-ADDAPFDICSCQFAMHYSWSTEAR----ARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       136 -~~~~~---~~~v~~~~~d~~~~~~~~~~-~~~~~~D~i~~~~~l~~~~~~~~~----~~~~l~~~~~~lk~gG~li~~~  206 (224)
                       ++..+   ...+++..+|+.+... .+. .....+|.++.....     +...    ...++..+.+++++||.+.-.+
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~-~~~~~~~~~~da~flD~f~-----p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLP-TLDDSLNNQVDAWFLDGFA-----PAKNPDMWNEQLFNAMARMTRPGGTFSTFT  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGG-GCCGGGTTCEEEEEECSSC-----C--CCTTCSHHHHHHHHHHEEEEEEEEESC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHh-hcccccCCceeEEEECCCC-----CCCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence             00001   1245678888765421 110 014689999986521     1111    2678899999999999866433


Q ss_pred             CChHHHHHHhhhcccc
Q 027388          207 PDANVIIKKLREEHFC  222 (224)
Q Consensus       207 ~~~~~~~~~~~~~gf~  222 (224)
                       -...+.+.+.++||.
T Consensus       212 -~~~~vr~~l~~aGf~  226 (689)
T 3pvc_A          212 -AAGFVRRGLQQAGFN  226 (689)
T ss_dssp             -CCHHHHHHHHHTTCE
T ss_pred             -CcHHHHHHHHhCCeE
Confidence             447889999999984

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.10  E-value=0.044  Score=44.87  Aligned_cols=105  Identities=13%  Similarity=0.013  Sum_probs=64.4

Q ss_pred             HHhhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      .....++.+||=+|+|. |.++.++++.... +++++|.++...+.+++.-.            ..-+.+...|+.+...
T Consensus       177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa------------~~vi~~~~~~~~~~i~  244 (370)
T 4ej6_A          177 LSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA------------TATVDPSAGDVVEAIA  244 (370)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC------------SEEECTTSSCHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC------------CEEECCCCcCHHHHHH
Confidence            34567889999999865 6677777765554 89999999999998877533            1001111111111000


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .......+.+|+|+-.-..          ...+....+.|++||.+++.
T Consensus       245 ~~~~~~~gg~Dvvid~~G~----------~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          245 GPVGLVPGGVDVVIECAGV----------AETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             STTSSSTTCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             hhhhccCCCCCEEEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence            0000013489999854221          13567788999999998874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.08  E-value=0.022  Score=46.31  Aligned_cols=99  Identities=15%  Similarity=0.055  Sum_probs=62.7

Q ss_pred             HhhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc---cccc
Q 027388           80 LYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD---CYEV  154 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d---~~~~  154 (224)
                      ....++.+||-+|+|. |.++.++++.... +++++|.++..++.+++.-.            .   .++..+   ..+.
T Consensus       167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa------------~---~vi~~~~~~~~~~  231 (356)
T 1pl8_A          167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA------------D---LVLQISKESPQEI  231 (356)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC------------S---EEEECSSCCHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC------------C---EEEcCcccccchH
Confidence            3456889999999875 7777777765555 89999999998888875422            1   111111   0010


Q ss_pred             c--cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          155 H--LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       155 ~--~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .  ..... . ..+|+|+-.-.-          ...+....+.|+++|.+++.
T Consensus       232 ~~~i~~~~-~-~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          232 ARKVEGQL-G-CKPEVTIECTGA----------EASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             HHHHHHHH-T-SCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHHHHh-C-CCCCEEEECCCC----------hHHHHHHHHHhcCCCEEEEE
Confidence            0  00000 1 579999854321          13466778899999998864

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.97  E-value=0.036  Score=44.84  Aligned_cols=91  Identities=16%  Similarity=0.082  Sum_probs=63.0

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+||=+|+|. |.++.++++....+++++|.++..++.+++.-.               -.++ .+..  ..   
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~v~-~~~~--~~---  231 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGV---------------KHFY-TDPK--QC---  231 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTC---------------SEEE-SSGG--GC---
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCC---------------Ceec-CCHH--HH---
Confidence            567889999999876 777777877666699999999999998876422               1222 2211  11   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                         ...+|+|+-.-.-.          ..+....+.|+++|.+++.
T Consensus       232 ---~~~~D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          232 ---KEELDFIISTIPTH----------YDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             ---CSCEEEEEECCCSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             ---hcCCCEEEECCCcH----------HHHHHHHHHHhcCCEEEEE
Confidence               23899998543211          1356678899999998874

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.86  E-value=0.15  Score=35.35  Aligned_cols=112  Identities=13%  Similarity=0.069  Sum_probs=67.0

Q ss_pred             CCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        85 ~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ..+|+=+|||. |......+......++++|.++..++.+++.                .+.++.+|..+...-.. ...
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~----------------g~~~i~gd~~~~~~l~~-a~i   69 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER----------------GVRAVLGNAANEEIMQL-AHL   69 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT----------------TCEEEESCTTSHHHHHH-TTG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc----------------CCCEEECCCCCHHHHHh-cCc
Confidence            35688888865 4333333334556899999999988877652                25678888765322100 023


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhccc
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHF  221 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~gf  221 (224)
                      ..+|++++...      . +.....+-...+.+.|+..++....+.. ..+.|++.|.
T Consensus        70 ~~ad~vi~~~~------~-~~~n~~~~~~a~~~~~~~~iiar~~~~~-~~~~l~~~G~  119 (140)
T 3fwz_A           70 ECAKWLILTIP------N-GYEAGEIVASARAKNPDIEIIARAHYDD-EVAYITERGA  119 (140)
T ss_dssp             GGCSEEEECCS------C-HHHHHHHHHHHHHHCSSSEEEEEESSHH-HHHHHHHTTC
T ss_pred             ccCCEEEEECC------C-hHHHHHHHHHHHHHCCCCeEEEEECCHH-HHHHHHHCCC
Confidence            57888876532      1 2223333445666778888777665543 4566666663

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.77  E-value=0.028  Score=45.16  Aligned_cols=54  Identities=19%  Similarity=0.115  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCCh---hHHHHHHHhcc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE---GSIEDCRTRYN  128 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~---~~~~~a~~~~~  128 (224)
                      ++.++.. ...++..|||.-||+|..+..... ...+++|+|+++   ..++.+++++.
T Consensus       232 ~~~~i~~-~~~~~~~vlDpF~GsGtt~~aa~~-~~r~~ig~e~~~~~~~~~~~~~~Rl~  288 (319)
T 1eg2_A          232 IERLVRA-LSHPGSTVLDFFAGSGVTARVAIQ-EGRNSICTDAAPVFKEYYQKQLTFLQ  288 (319)
T ss_dssp             HHHHHHH-HSCTTCEEEETTCTTCHHHHHHHH-HTCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             HHHHHHH-hCCCCCEEEecCCCCCHHHHHHHH-cCCcEEEEECCccHHHHHHHHHHHHH
Confidence            4444433 356889999999999988887654 456999999999   99999999986

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.71  E-value=0.038  Score=44.79  Aligned_cols=100  Identities=15%  Similarity=0.069  Sum_probs=64.0

Q ss_pred             HHhhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec---cccc
Q 027388           79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG---DCYE  153 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~---d~~~  153 (224)
                      .....++.+||=+|+|. |.++.++++.... +|+++|.++..++.+++.-.               ..++..   ++.+
T Consensus       161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~  225 (352)
T 3fpc_A          161 LANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA---------------TDIINYKNGDIVE  225 (352)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC---------------CEEECGGGSCHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC---------------ceEEcCCCcCHHH
Confidence            33567889999999876 6677777766554 89999999999998877533               111111   1111


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .-. ... ....+|+|+-.-.-          ...+....+.|++||.+++.
T Consensus       226 ~v~-~~t-~g~g~D~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          226 QIL-KAT-DGKGVDKVVIAGGD----------VHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             HHH-HHT-TTCCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             HHH-HHc-CCCCCCEEEECCCC----------hHHHHHHHHHHhcCCEEEEe
Confidence            000 000 23479999854321          13567788899999998853

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.66  E-value=0.054  Score=44.30  Aligned_cols=96  Identities=20%  Similarity=0.136  Sum_probs=61.9

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+||-+|+|. |.++.++++....+++++|.++..++.+++.-.               ..++.  ..+......
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa---------------~~vi~--~~~~~~~~~  253 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA---------------DEVVN--SRNADEMAA  253 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC---------------SEEEE--TTCHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---------------cEEec--cccHHHHHH
Confidence            456789999999875 777777776666689999999999998876422               11111  111110000


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ....+|+|+..-.-.          ..+....+.|+++|.++..
T Consensus       254 --~~~g~Dvvid~~g~~----------~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          254 --HLKSFDFILNTVAAP----------HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             --TTTCEEEEEECCSSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             --hhcCCCEEEECCCCH----------HHHHHHHHHhccCCEEEEe
Confidence              125799998543221          1345677899999988764

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=95.56  E-value=0.037  Score=49.06  Aligned_cols=137  Identities=15%  Similarity=0.124  Sum_probs=77.9

Q ss_pred             CCCeEEEecCCCchhHHHHHhhc-----------C--CeEEEEeC---ChhHHHHHHHhccCCccc-----ccccc---c
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAK-----------I--GYYVGIDI---AEGSIEDCRTRYNGDADH-----HQRRK---K  139 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~-----------~--~~~~gvD~---s~~~~~~a~~~~~~~~~~-----~~~~~---~  139 (224)
                      +.-+|||+|-|+|.+........           .  -+++++|.   +...+..+-..+......     ..-..   +
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            34589999999999777654421           1  24889998   777666444432210000     00000   0


Q ss_pred             --------CCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHH
Q 027388          140 --------FSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (224)
Q Consensus       140 --------~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~  211 (224)
                              ....+++..+|+.+.-..........||+++.....-.. .++-=-..++..+.+++++||.+.-.+ ....
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~-np~~w~~~~~~~l~~~~~~g~~~~t~~-~~~~  223 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK-NPDMWTQNLFNAMARLARPGGTLATFT-SAGF  223 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGG-CGGGSCHHHHHHHHHHEEEEEEEEESC-CCHH
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcC-ChhhhhHHHHHHHHHHhCCCCEEEecc-CcHH
Confidence                    012345666776543211000013679999975521100 000002568899999999999876444 3478


Q ss_pred             HHHHhhhcccc
Q 027388          212 IIKKLREEHFC  222 (224)
Q Consensus       212 ~~~~~~~~gf~  222 (224)
                      +.+.+.++||.
T Consensus       224 vr~~L~~aGf~  234 (676)
T 3ps9_A          224 VRRGLQDAGFT  234 (676)
T ss_dssp             HHHHHHHHTCE
T ss_pred             HHHHHHhCCeE
Confidence            88999999984

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.52  E-value=0.068  Score=43.47  Aligned_cols=101  Identities=17%  Similarity=0.059  Sum_probs=64.2

Q ss_pred             HhhcCCCeEEEecCCC-chhHHHHHhhcCCe-EEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe-----cccc
Q 027388           80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-----GDCY  152 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-----~d~~  152 (224)
                      ....++.+||=+|+|. |.++.++++....+ ++++|.++..++.+++. .            ...+.+..     .++.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~------------~~~~~~~~~~~~~~~~~  241 (363)
T 3m6i_A          175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C------------PEVVTHKVERLSAEESA  241 (363)
T ss_dssp             HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C------------TTCEEEECCSCCHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c------------hhcccccccccchHHHH
Confidence            3567888999999866 77777777665554 99999999999999876 3            11122211     1111


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +.-. .. .....+|+|+-.-.-          ...+....+.|++||.+++.
T Consensus       242 ~~v~-~~-t~g~g~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          242 KKIV-ES-FGGIEPAVALECTGV----------ESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             HHHH-HH-TSSCCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHH-HH-hCCCCCCEEEECCCC----------hHHHHHHHHHhcCCCEEEEE
Confidence            1000 00 024579999854321          13567788899999998874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.47  E-value=0.04  Score=40.64  Aligned_cols=97  Identities=22%  Similarity=0.212  Sum_probs=58.6

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++++||-.|+  |.|..+..++.....+++++|.++...+.+++.-.              . ..  .|..+.....
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~--------------~-~~--~d~~~~~~~~   97 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV--------------E-YV--GDSRSVDFAD   97 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC--------------S-EE--EETTCSTHHH
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC--------------C-EE--eeCCcHHHHH
Confidence            3467889999995  34556666655555689999999988777654211              1 11  1221111000


Q ss_pred             -c--cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 -V--LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 -~--~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       .  ......+|+++.+-.      .     ..+....+.|+++|.++..
T Consensus        98 ~~~~~~~~~~~D~vi~~~g------~-----~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A           98 EILELTDGYGVDVVLNSLA------G-----EAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             HHHHHTTTCCEEEEEECCC------T-----HHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHhCCCCCeEEEECCc------h-----HHHHHHHHHhccCCEEEEE
Confidence             0  002246999986532      1     2567788999999998864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.43  E-value=0.048  Score=45.03  Aligned_cols=108  Identities=13%  Similarity=0.010  Sum_probs=63.8

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc-c--
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-H--  155 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~--  155 (224)
                      ...++.+||-+|+|. |.++.++++.... +++++|.++..++.+++.-.                .++...-.+. .  
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa----------------~~i~~~~~~~~~~~  245 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGF----------------ETIDLRNSAPLRDQ  245 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTC----------------EEEETTSSSCHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC----------------cEEcCCCcchHHHH
Confidence            456889999999976 7788888765444 89999999999888864311                1221111111 0  


Q ss_pred             cccccCCCCCeeEEEEccccccccC-C---HHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWS-T---EARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~-~---~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..... ....+|+|+-.-.-..... .   .......+....+.|++||.+++.
T Consensus       246 ~~~~~-~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          246 IDQIL-GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             HHHHH-SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             HHHHh-CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            00000 1237999985432210000 0   000123577888999999998753

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.38  E-value=0.036  Score=46.13  Aligned_cols=46  Identities=11%  Similarity=0.060  Sum_probs=39.6

Q ss_pred             cCCCeEEEecCCCchhHHHHH-hhc--CCeEEEEeCChhHHHHHHHhcc
Q 027388           83 RRGDVVLDLACGKGGDLIKWD-KAK--IGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~-~~~--~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      .++..++|+|++.|.++..++ ...  .++|+++|+++...+..++++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~  273 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR  273 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence            578899999999999998876 333  3699999999999999998876

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.35  E-value=0.082  Score=42.79  Aligned_cols=99  Identities=15%  Similarity=0.078  Sum_probs=62.0

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc-ccccc--c
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD-CYEVH--L  156 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d-~~~~~--~  156 (224)
                      ...++.+||-+|+|. |.++.++++....+++++|.++..++.+++.-.            .   .++..+ ..+..  .
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa------------~---~~~~~~~~~~~~~~i  229 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA------------D---VTLVVDPAKEEESSI  229 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC------------S---EEEECCTTTSCHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC------------C---EEEcCcccccHHHHH
Confidence            456889999999865 667777776666679999999999988875422            1   111111 01110  0


Q ss_pred             ccccCC---CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKVLAD---DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~~~~---~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .... .   ...+|+|+..-..          ...+....+.|+++|.+++.
T Consensus       230 ~~~~-~~~~g~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          230 IERI-RSAIGDLPNVTIDCSGN----------EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             HHHH-HHHSSSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHh-ccccCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            0000 1   2469999854321          12466778899999998864

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.34  E-value=0.038  Score=44.42  Aligned_cols=77  Identities=17%  Similarity=0.237  Sum_probs=50.5

Q ss_pred             CeeEEeccccccccccccCCCCCeeEEEEcccccccc----CC------HHHHHHHHHHHHhhccCCeEEEEEeCCh---
Q 027388          143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW----ST------EARARRALANVSALLRPGGTFIGTMPDA---  209 (224)
Q Consensus       143 ~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~----~~------~~~~~~~l~~~~~~lk~gG~li~~~~~~---  209 (224)
                      ...++++|..+... ..  +.++||+|++.-......    +.      ...+...+..+.++|+|||.+++...+.   
T Consensus        14 ~~~ii~gD~~~~l~-~l--~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~   90 (323)
T 1boo_A           14 NGSMYIGDSLELLE-SF--PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMK   90 (323)
T ss_dssp             SEEEEESCHHHHGG-GS--CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEET
T ss_pred             CceEEeCcHHHHHh-hC--CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecC
Confidence            46788999765311 11  467899999875432110    00      1356788999999999999999976543   


Q ss_pred             ----------HHHHHHhhhcccc
Q 027388          210 ----------NVIIKKLREEHFC  222 (224)
Q Consensus       210 ----------~~~~~~~~~~gf~  222 (224)
                                ..+.+.+++.||.
T Consensus        91 g~~~~~~~~~~~i~~~~~~~Gf~  113 (323)
T 1boo_A           91 GVPARSIYNFRVLIRMIDEVGFF  113 (323)
T ss_dssp             TEEEECCHHHHHHHHHHHTTCCE
T ss_pred             CCcccccchHHHHHHHHHhCCCE
Confidence                      2344556777763

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.25  E-value=0.032  Score=45.12  Aligned_cols=97  Identities=18%  Similarity=0.008  Sum_probs=61.9

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc-ccccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVHL  156 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~  156 (224)
                      .. ++.+||-+|+|. |.++.++++..  ..+++++|.++..++.+++.-.               -.++...- .+. .
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~-~  230 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGA---------------DYVSEMKDAESL-I  230 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTC---------------SEEECHHHHHHH-H
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCC---------------CEEeccccchHH-H
Confidence            45 789999999965 66777777665  6789999999999998876432               11111000 000 0


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .... ....+|+|+-.-..          ...+....+.|+++|.++..
T Consensus       231 ~~~~-~g~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          231 NKLT-DGLGASIAIDLVGT----------EETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             HHHH-TTCCEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HHhh-cCCCccEEEECCCC----------hHHHHHHHHHhhcCCEEEEe
Confidence            0000 12479999864321          13567788899999998764

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.09  E-value=0.058  Score=43.97  Aligned_cols=98  Identities=13%  Similarity=-0.052  Sum_probs=62.9

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--cc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD  157 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~  157 (224)
                      ...++.+||=+|+|. |..+..+++....+++++|.++..++.+++.-.               -.++..+-.++.  ..
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~v~  250 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA---------------DHGINRLEEDWVERVY  250 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC---------------SEEEETTTSCHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC---------------CEEEcCCcccHHHHHH
Confidence            456789999999775 667777777666799999999999998876532               112221111110  00


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ... ....+|+|+-.-.-           ..+....+.|+++|.+++.
T Consensus       251 ~~~-~g~g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          251 ALT-GDRGADHILEIAGG-----------AGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             HHH-TTCCEEEEEEETTS-----------SCHHHHHHHEEEEEEEEEE
T ss_pred             HHh-CCCCceEEEECCCh-----------HHHHHHHHHhhcCCEEEEE
Confidence            000 23479999864321           1356678899999998864

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.07  E-value=0.065  Score=43.06  Aligned_cols=98  Identities=13%  Similarity=0.027  Sum_probs=61.8

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--c
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (224)
                      ...++++||-.|+  |.|..+..++.....++++++.++..++.+.+.+.             . ...+...-.++.  .
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g-------------~-~~~~~~~~~~~~~~~  211 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELG-------------F-DGAIDYKNEDLAAGL  211 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-------------C-SEEEETTTSCHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-------------C-CEEEECCCHHHHHHH
Confidence            4578899999998  34667777776666699999999988888843332             0 111111111110  0


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ...  ..+.+|+++.+-.       .    ..+....+.|+++|.+++.
T Consensus       212 ~~~--~~~~~d~vi~~~g-------~----~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          212 KRE--CPKGIDVFFDNVG-------G----EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             HHH--CTTCEEEEEESSC-------H----HHHHHHHTTEEEEEEEEEC
T ss_pred             HHh--cCCCceEEEECCC-------c----chHHHHHHHHhhCCEEEEE
Confidence            000  1357999986432       1    2577888999999998864

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=94.95  E-value=0.028  Score=46.38  Aligned_cols=108  Identities=10%  Similarity=0.045  Sum_probs=64.2

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-cc--
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VH--  155 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~--  155 (224)
                      ...++.+||-+|+|. |.++.++++.... .++++|.++..++.+++.-.                ..+...-.+ +.  
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa----------------~~i~~~~~~~~~~~  245 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF----------------EIADLSLDTPLHEQ  245 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----------------EEEETTSSSCHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCC----------------cEEccCCcchHHHH
Confidence            456789999999876 7778888766554 79999999999999875422                112111000 00  


Q ss_pred             cccccCCCCCeeEEEEcccccccc-----CCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSW-----STEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~-----~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..... ....+|+|+-.-.-....     ....+....+....+.|++||.+++.
T Consensus       246 v~~~t-~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          246 IAALL-GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             HHHHH-SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHh-CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            00000 124799998543211000     00011234677888999999998764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.94  E-value=0.15  Score=42.08  Aligned_cols=46  Identities=20%  Similarity=0.031  Sum_probs=36.1

Q ss_pred             hcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhc
Q 027388           82 ARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRY  127 (224)
Q Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~  127 (224)
                      ..++.+||=+|+|. |.++.++++.... +++++|.++..++.+++.-
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lG  258 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELG  258 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC
Confidence            45788999999865 6677777765555 8999999999999987653

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.88  E-value=0.11  Score=42.51  Aligned_cols=98  Identities=11%  Similarity=0.009  Sum_probs=61.5

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc-c-cccc-
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD-C-YEVH-  155 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d-~-~~~~-  155 (224)
                      ...++.+||=+|+|. |.++.++++.... +++++|.++..++.+++.-.               -.++... . .++. 
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~~~~~  252 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA---------------TECLNPKDYDKPIYE  252 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC---------------SEEECGGGCSSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC---------------cEEEecccccchHHH
Confidence            456788999999865 6677777765444 79999999999998875422               1111111 0 0010 


Q ss_pred             -cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC-eEEEEE
Q 027388          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (224)
Q Consensus       156 -~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g-G~li~~  205 (224)
                       ....  ..+.+|+|+-.-.-          ...+....+.|+++ |.+++.
T Consensus       253 ~i~~~--t~gg~Dvvid~~g~----------~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          253 VICEK--TNGGVDYAVECAGR----------IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             HHHHH--TTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHH--hCCCCCEEEECCCC----------HHHHHHHHHHHhcCCCEEEEE
Confidence             0000  12479999854321          13567788999999 988764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.87  E-value=0.088  Score=43.10  Aligned_cols=98  Identities=15%  Similarity=0.109  Sum_probs=61.5

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc--ccccc-
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD--CYEVH-  155 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d--~~~~~-  155 (224)
                      ...++.+||=+|+|. |.++.++++.... +|+++|.++..++.+++.-.               -.++...  -.++. 
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~~~~~  254 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV---------------NEFVNPKDHDKPIQE  254 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTC---------------CEEECGGGCSSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC---------------cEEEccccCchhHHH
Confidence            456788999999864 6677777765444 89999999999998875422               1111111  00100 


Q ss_pred             -cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC-eEEEEE
Q 027388          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (224)
Q Consensus       156 -~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g-G~li~~  205 (224)
                       ....  ..+.+|+|+-.-.-          ...+....+.|++| |.+++.
T Consensus       255 ~i~~~--~~gg~D~vid~~g~----------~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          255 VIVDL--TDGGVDYSFECIGN----------VSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             HHHHH--TTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHh--cCCCCCEEEECCCC----------HHHHHHHHHHhhccCCEEEEE
Confidence             0000  12489999854321          23567788999996 988764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.83  E-value=0.099  Score=42.69  Aligned_cols=98  Identities=11%  Similarity=0.090  Sum_probs=61.4

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc-c-cccc-
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD-C-YEVH-  155 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d-~-~~~~-  155 (224)
                      ...++.+||-+|+|. |.++.++++.... +++++|.++..++.+++.-.               -.++... . .++. 
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~~  253 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA---------------TDFVNPNDHSEPISQ  253 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------------CEEECGGGCSSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC---------------ceEEeccccchhHHH
Confidence            456788999999865 6677777765555 79999999999998875422               1111111 0 0010 


Q ss_pred             -cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC-eEEEEE
Q 027388          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (224)
Q Consensus       156 -~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g-G~li~~  205 (224)
                       ....  ..+.+|+|+-.-.-          ...+....+.|+++ |.+++.
T Consensus       254 ~~~~~--~~~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          254 VLSKM--TNGGVDFSLECVGN----------VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             HHHHH--HTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHH--hCCCCCEEEECCCC----------HHHHHHHHHHhhcCCcEEEEE
Confidence             0000  12479999854321          13567788999999 988764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.82  E-value=0.12  Score=42.16  Aligned_cols=98  Identities=15%  Similarity=0.123  Sum_probs=61.5

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc-c-cccc-
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD-C-YEVH-  155 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d-~-~~~~-  155 (224)
                      ...++.+||=+|+|. |.++.++++.... +++++|.++..++.+++.-.               -.++... . .++. 
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~~  251 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA---------------TECINPQDFSKPIQE  251 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC---------------SEEECGGGCSSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC---------------ceEeccccccccHHH
Confidence            456788999999865 6677777765554 79999999999999876432               1111111 0 0010 


Q ss_pred             -cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC-eEEEEE
Q 027388          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (224)
Q Consensus       156 -~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g-G~li~~  205 (224)
                       ....  ..+.+|+|+-.-.-          ...+....+.|+++ |.+++.
T Consensus       252 ~v~~~--~~~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          252 VLIEM--TDGGVDYSFECIGN----------VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             HHHHH--TTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHH--hCCCCCEEEECCCc----------HHHHHHHHHhhccCCcEEEEE
Confidence             0000  12479999854321          13567788999999 998764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.82  E-value=0.13  Score=41.98  Aligned_cols=98  Identities=12%  Similarity=0.122  Sum_probs=61.2

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc--cccc-
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC--YEVH-  155 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~--~~~~-  155 (224)
                      ...++.+||-+|+|. |.++.++++.... +++++|.++..++.+++.-.               -.++...-  .++. 
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~~  252 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA---------------TECVNPQDYKKPIQE  252 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------------SEEECGGGCSSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC---------------ceEecccccchhHHH
Confidence            456788999999865 6677777765555 79999999999998875422               11111110  0010 


Q ss_pred             -cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC-eEEEEE
Q 027388          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (224)
Q Consensus       156 -~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g-G~li~~  205 (224)
                       ....  ..+.+|+|+-.-.-          ...+....+.|+++ |.+++.
T Consensus       253 ~~~~~--~~~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          253 VLTEM--SNGGVDFSFEVIGR----------LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             HHHHH--TTSCBSEEEECSCC----------HHHHHHHHHHBCTTTCEEEEC
T ss_pred             HHHHH--hCCCCcEEEECCCC----------HHHHHHHHHHhhcCCcEEEEe
Confidence             0000  12479999854321          13567788899999 988764

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=94.80  E-value=0.23  Score=45.91  Aligned_cols=125  Identities=12%  Similarity=0.120  Sum_probs=75.9

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc-------
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-------  155 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------  155 (224)
                      ...+++|+-||.|++...+...++ ..+.++|+++.+++..+.++.              ...++..|+..+.       
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p--------------~~~~~~~DI~~l~~~~~~~d  604 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP--------------GSTVFTEDCNILLKLVMAGE  604 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT--------------TSEEECSCHHHHHHHHHHTC
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC--------------CCccccccHHHHhhhccchh
Confidence            345799999999999998876665 467799999999999888865              2345555543221       


Q ss_pred             ----cccccCCCCCeeEEEEccccccccC-C---H---HH----HHHHHHHHHhhccCCeEEEEEeCC---------hHH
Q 027388          156 ----LDKVLADDAPFDICSCQFAMHYSWS-T---E---AR----ARRALANVSALLRPGGTFIGTMPD---------ANV  211 (224)
Q Consensus       156 ----~~~~~~~~~~~D~i~~~~~l~~~~~-~---~---~~----~~~~l~~~~~~lk~gG~li~~~~~---------~~~  211 (224)
                          ........+.+|+|+....-+.+.. .   .   .+    +...+.++.+.++|.-+|+=.+++         ...
T Consensus       605 i~~~~~~~lp~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~rPk~~llENV~glls~~~~~~~~~  684 (1002)
T 3swr_A          605 TTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKL  684 (1002)
T ss_dssp             SBCTTCCBCCCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHHCCSEEEEEEEGGGGTTGGGHHHHH
T ss_pred             hhhhhhhhcccCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHHHHHhCCCEEEEeccHHHhccCcchHHHH
Confidence                0000112357999996542222100 0   0   11    112234555667887665545543         245


Q ss_pred             HHHHhhhcccc
Q 027388          212 IIKKLREEHFC  222 (224)
Q Consensus       212 ~~~~~~~~gf~  222 (224)
                      ++..|.+.||.
T Consensus       685 i~~~L~~lGY~  695 (1002)
T 3swr_A          685 TLRCLVRMGYQ  695 (1002)
T ss_dssp             HHHHHHHHTCE
T ss_pred             HHHHHHhcCCe
Confidence            67777888873

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.78  E-value=0.15  Score=41.07  Aligned_cols=98  Identities=16%  Similarity=0.146  Sum_probs=61.5

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+||-+|+|. |..+..+++....+++++|.++..++.+++.-.               ..+  .|..+......
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~~--~d~~~~~~~~~  223 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA---------------DLV--VNPLKEDAAKF  223 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC---------------SEE--ECTTTSCHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCC---------------CEE--ecCCCccHHHH
Confidence            456789999999854 667777776666699999999999888865321               011  12221111000


Q ss_pred             c-CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 L-ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~-~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      . ...+.+|+|+..-..          ...+....+.|+++|.+++.
T Consensus       224 ~~~~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          224 MKEKVGGVHAAVVTAVS----------KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             HHHHHSSEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHhCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEe
Confidence            0 001479999864321          13567788899999988764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.75  E-value=0.078  Score=42.72  Aligned_cols=98  Identities=17%  Similarity=0.176  Sum_probs=60.7

Q ss_pred             hhcCCCeEEEecCCC--chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--c
Q 027388           81 YARRGDVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~--G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (224)
                      ...++.+||=+|+|+  |..+..+++....+++++|.++..++.+++.-.               -..+...-.++.  .
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga---------------~~~~~~~~~~~~~~~  205 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGA---------------AYVIDTSTAPLYETV  205 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC---------------SEEEETTTSCHHHHH
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCC---------------cEEEeCCcccHHHHH
Confidence            456789999999974  667777776666699999999999998876432               111111111110  0


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ... .....+|+|+.+-.-       ...    ....+.|+++|.+++.
T Consensus       206 ~~~-~~~~g~Dvvid~~g~-------~~~----~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          206 MEL-TNGIGADAAIDSIGG-------PDG----NELAFSLRPNGHFLTI  242 (340)
T ss_dssp             HHH-TTTSCEEEEEESSCH-------HHH----HHHHHTEEEEEEEEEC
T ss_pred             HHH-hCCCCCcEEEECCCC-------hhH----HHHHHHhcCCCEEEEE
Confidence            000 023579999864321       221    2344789999998864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=94.74  E-value=0.092  Score=42.66  Aligned_cols=98  Identities=16%  Similarity=0.054  Sum_probs=60.7

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc-cccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~  158 (224)
                      ...++.+||-+|+|. |.++..+++....+++++|.++..++.+++.-.               -.++.  ..+. ....
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~v~~--~~~~~~~~~  238 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA---------------DHYIA--TLEEGDWGE  238 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC---------------SEEEE--GGGTSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC---------------CEEEc--CcCchHHHH
Confidence            456789999999854 667777776555689999999999998876422               11121  1111 1100


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..  .+.+|+|+..-.-.    .    ...+....+.|+++|.++..
T Consensus       239 ~~--~~~~D~vid~~g~~----~----~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          239 KY--FDTFDLIVVCASSL----T----DIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             HS--CSCEEEEEECCSCS----T----TCCTTTGGGGEEEEEEEEEC
T ss_pred             Hh--hcCCCEEEECCCCC----c----HHHHHHHHHHhcCCCEEEEe
Confidence            11  15799998643220    0    01234567889999988753

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.69  E-value=0.08  Score=42.72  Aligned_cols=98  Identities=8%  Similarity=0.056  Sum_probs=63.6

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec--ccccccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG--DCYEVHL  156 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~--d~~~~~~  156 (224)
                      ...++.+||=+|+|. |.++.++++.. ..+++++|.++..++.+++.-.               ..++..  +..+.-.
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa---------------~~~i~~~~~~~~~v~  232 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA---------------DAAVKSGAGAADAIR  232 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC---------------SEEEECSTTHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---------------CEEEcCCCcHHHHHH
Confidence            456789999999866 77777777654 6799999999999999876533               111111  1111000


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ... ....+|+|+-.-.-          ...+....+.|+++|.+++.
T Consensus       233 -~~t-~g~g~d~v~d~~G~----------~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          233 -ELT-GGQGATAVFDFVGA----------QSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             -HHH-GGGCEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             -HHh-CCCCCeEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence             000 12479999854321          23667788999999998864

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.57  E-value=0.21  Score=40.62  Aligned_cols=97  Identities=16%  Similarity=0.043  Sum_probs=62.0

Q ss_pred             hhcCCCeEEEec--CCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--c
Q 027388           81 YARRGDVVLDLA--CGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (224)
Q Consensus        81 ~~~~~~~iLDiG--cG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (224)
                      ...++.+||=+|  .|.|..+..+++....++++++.++..++.+++.-.               -.++..+-.++.  .
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga---------------~~~~~~~~~~~~~~~  224 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGC---------------DRPINYKTEPVGTVL  224 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---------------SEEEETTTSCHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCC---------------cEEEecCChhHHHHH
Confidence            456788999999  355778888877666689999999988888875322               111111111110  0


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ...  ....+|+|+..-.      .     ..+..+.+.|+++|.+++.
T Consensus       225 ~~~--~~~g~D~vid~~g------~-----~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          225 KQE--YPEGVDVVYESVG------G-----AMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             HHH--CTTCEEEEEECSC------T-----HHHHHHHHHEEEEEEEEEC
T ss_pred             HHh--cCCCCCEEEECCC------H-----HHHHHHHHHHhcCCEEEEE
Confidence            000  1257999986432      1     3567788999999988764

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.55  E-value=0.11  Score=41.75  Aligned_cols=97  Identities=19%  Similarity=0.077  Sum_probs=59.7

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-cccc
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLD  157 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~  157 (224)
                      ...++++||-.|+  |.|..+..++.....+++++|.++..++.+++.-.              ..   ..|..+ ....
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~--------------~~---~~d~~~~~~~~  204 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF--------------DA---AFNYKTVNSLE  204 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC--------------SE---EEETTSCSCHH
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC--------------cE---EEecCCHHHHH
Confidence            4567889999998  44556666665566699999999988888743211              01   112221 1100


Q ss_pred             ccc--CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVL--ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~--~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ...  ...+.+|+++.+-.       .    ..+....+.|++||.+++.
T Consensus       205 ~~~~~~~~~~~d~vi~~~g-------~----~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          205 EALKKASPDGYDCYFDNVG-------G----EFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             HHHHHHCTTCEEEEEESSC-------H----HHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHhCCCCeEEEECCC-------h----HHHHHHHHHHhcCCEEEEE
Confidence            000  01257999986542       1    2367788999999998763

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=94.39  E-value=0.46  Score=42.82  Aligned_cols=45  Identities=18%  Similarity=0.138  Sum_probs=37.3

Q ss_pred             CCCeEEEecCCCchhHHHHHhhc------CCeEEEEeCChhHHHHHHHhcc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAK------IGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~------~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      +..+|||+-||.|++..-+...+      +..+.++|+++.+++.-+.++.
T Consensus       211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp  261 (784)
T 4ft4_B          211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP  261 (784)
T ss_dssp             EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence            44689999999999988876543      4567799999999999998865

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=94.38  E-value=0.11  Score=42.77  Aligned_cols=57  Identities=14%  Similarity=0.074  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--------cCCeEEEEeCChhHHHHHHHhcc
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------KIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--------~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      |+......+....+..|+|+|+|+|.++..++..        ...+|+.||+|+...+.-++.+.
T Consensus        68 ~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           68 WSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             HHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             HHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            3333333333334457999999999998877642        22379999999988887777665

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.35  E-value=0.11  Score=42.00  Aligned_cols=97  Identities=15%  Similarity=0.100  Sum_probs=62.0

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc--
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL--  156 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--  156 (224)
                      ...++.+||=+|+  |.|..+..+++....++++++.++..++.+++.-.               -.++..+ .++..  
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga---------------~~v~~~~-~~~~~~v  219 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGA---------------DIVLPLE-EGWAKAV  219 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC---------------SEEEESS-TTHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC---------------cEEecCc-hhHHHHH
Confidence            3467889999997  34667777777666799999999999988876532               1122111 11110  


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .... ....+|+|+..-.-           ..+....+.|+++|.+++.
T Consensus       220 ~~~~-~~~g~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          220 REAT-GGAGVDMVVDPIGG-----------PAFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             HHHT-TTSCEEEEEESCC-------------CHHHHHHTEEEEEEEEEC
T ss_pred             HHHh-CCCCceEEEECCch-----------hHHHHHHHhhcCCCEEEEE
Confidence            0000 23479999864321           1456788899999998864

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.32  E-value=0.13  Score=41.61  Aligned_cols=97  Identities=14%  Similarity=0.191  Sum_probs=60.9

Q ss_pred             hhcCCCeEEEecCCC--chhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--
Q 027388           81 YARRGDVVLDLACGK--GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--  155 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~--G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--  155 (224)
                      ...++.+||-.|+|+  |..+..++... ..+++++|.++..++.+++.-.              . .++  |..+..  
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~--------------~-~~~--~~~~~~~~  229 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA--------------D-YVI--NASMQDPL  229 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC--------------S-EEE--ETTTSCHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC--------------C-EEe--cCCCccHH
Confidence            456789999999983  55666666555 6689999999988888865422              0 111  111111  


Q ss_pred             --cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 --LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 --~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ..... ..+.+|+++..-.-          ...+....+.|+++|.+++.
T Consensus       230 ~~~~~~~-~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          230 AEIRRIT-ESKGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             HHHHHHT-TTSCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEEC
T ss_pred             HHHHHHh-cCCCceEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence              00000 11579999865321          13567788899999988763

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.30  E-value=0.1  Score=42.20  Aligned_cols=98  Identities=21%  Similarity=0.131  Sum_probs=60.9

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-cccc
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLD  157 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~  157 (224)
                      ...++++||-+|+  |.|..+..++.....+++++|.++...+.+++.-.              . ..+  |..+ ....
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~--------------~-~~~--d~~~~~~~~  228 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGG--------------E-VFI--DFTKEKDIV  228 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTC--------------C-EEE--ETTTCSCHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCC--------------c-eEE--ecCccHhHH
Confidence            4567899999998  34666667666556699999999888877765311              0 111  2221 0000


Q ss_pred             ccc--CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVL--ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~--~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ...  ...+.+|+++.+-..          ...+..+.+.|+++|.+++.
T Consensus       229 ~~~~~~~~~~~D~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          229 GAVLKATDGGAHGVINVSVS----------EAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             HHHHHHHTSCEEEEEECSSC----------HHHHHHHTTSEEEEEEEEEC
T ss_pred             HHHHHHhCCCCCEEEECCCc----------HHHHHHHHHHHhcCCEEEEE
Confidence            000  001279999865431          13567788999999988764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.25  E-value=0.18  Score=41.08  Aligned_cols=96  Identities=10%  Similarity=0.056  Sum_probs=60.4

Q ss_pred             CCCeEEEec-CCC-chhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           84 RGDVVLDLA-CGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        84 ~~~~iLDiG-cG~-G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ++.+||=+| +|. |.++.++++. ...++++++.++..++.+++.-.               -.++... .++......
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa---------------d~vi~~~-~~~~~~v~~  234 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA---------------HHVIDHS-KPLAAEVAA  234 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC---------------SEEECTT-SCHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC---------------CEEEeCC-CCHHHHHHH
Confidence            577899888 443 7788888875 57799999999999988876422               1111110 011000000


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ...+.+|+|+-.-.          -...+..+.+.|+++|.+++.
T Consensus       235 ~~~~g~Dvvid~~g----------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          235 LGLGAPAFVFSTTH----------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             TCSCCEEEEEECSC----------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             hcCCCceEEEECCC----------chhhHHHHHHHhcCCCEEEEE
Confidence            02468999985422          124567788999999998864

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.25  E-value=0.16  Score=41.44  Aligned_cols=97  Identities=13%  Similarity=0.058  Sum_probs=61.1

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-----cccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-----DCYE  153 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-----d~~~  153 (224)
                      ...++.+||=+|+|. |.++.++++.... +++++|.++..++.+++.-.               -.++..     ++.+
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~~~~~  256 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA---------------TDCLNPRELDKPVQD  256 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------------SEEECGGGCSSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC---------------cEEEccccccchHHH
Confidence            456788999999865 6677777766555 79999999999998875422               111111     1110


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC-eEEEEE
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g-G~li~~  205 (224)
                      . ....  ..+.+|+|+-.-.-          ...+....+.|+++ |.+++.
T Consensus       257 ~-v~~~--~~~g~Dvvid~~G~----------~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          257 V-ITEL--TAGGVDYSLDCAGT----------AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             H-HHHH--HTSCBSEEEESSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             H-HHHH--hCCCccEEEECCCC----------HHHHHHHHHHhhcCCCEEEEE
Confidence            0 0000  12479999854321          23567788999999 988763

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=94.23  E-value=0.11  Score=42.65  Aligned_cols=98  Identities=16%  Similarity=0.045  Sum_probs=60.8

Q ss_pred             hcCCCeEEEecCCC-chhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc---ccccc-
Q 027388           82 ARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD---CYEVH-  155 (224)
Q Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d---~~~~~-  155 (224)
                      ..++.+||-+|+|. |.++.++++... .++++++.++..++.+++.-.               -.++..+   -.++. 
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~~~  257 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA---------------DLTLNRRETSVEERRK  257 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC---------------SEEEETTTSCHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC---------------cEEEeccccCcchHHH
Confidence            56788999999764 667777776655 599999999999988875322               1122111   00000 


Q ss_pred             -cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 -~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ..... ....+|+|+-.-.-          ...+....+.|+++|.++..
T Consensus       258 ~v~~~~-~g~g~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          258 AIMDIT-HGRGADFILEATGD----------SRALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             HHHHHT-TTSCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHh-CCCCCcEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence             00000 12379999854321          12456778899999998764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.22  E-value=0.16  Score=40.98  Aligned_cols=96  Identities=18%  Similarity=0.014  Sum_probs=59.8

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--cccc
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKV  159 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~  159 (224)
                      ++.+||-+|+|. |..+.++++.... +++++|.++..++.+++.-.               ..++..+-.++.  ....
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga---------------~~~~~~~~~~~~~~v~~~  231 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA---------------DYVINPFEEDVVKEVMDI  231 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC---------------SEEECTTTSCHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC---------------CEEECCCCcCHHHHHHHH
Confidence            788999999954 6677777765555 89999999998888875422               111111101110  0000


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      . ....+|+|+..-..          ...+....+.|+++|.++..
T Consensus       232 ~-~g~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          232 T-DGNGVDVFLEFSGA----------PKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             T-TTSCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             c-CCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            0 12479999864321          13567788899999988764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.21  E-value=0.33  Score=39.27  Aligned_cols=97  Identities=14%  Similarity=0.061  Sum_probs=60.8

Q ss_pred             HhhcCC------CeEEEecCCC-chhH-HHHH-hhcCCe-EEEEeCChh---HHHHHHHhccCCcccccccccCCCCeeE
Q 027388           80 LYARRG------DVVLDLACGK-GGDL-IKWD-KAKIGY-YVGIDIAEG---SIEDCRTRYNGDADHHQRRKKFSFPARL  146 (224)
Q Consensus        80 ~~~~~~------~~iLDiGcG~-G~~~-~~l~-~~~~~~-~~gvD~s~~---~~~~a~~~~~~~~~~~~~~~~~~~~v~~  146 (224)
                      ....++      .+||=+|+|. |.++ .+++ +....+ ++++|.++.   ..+.+++.-.                ..
T Consensus       162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa----------------~~  225 (357)
T 2b5w_A          162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDA----------------TY  225 (357)
T ss_dssp             HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTC----------------EE
T ss_pred             cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCC----------------cc
Confidence            345677      8999999854 6677 7777 655555 999999998   8888865322                11


Q ss_pred             Eeccccccccccc-cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          147 ICGDCYEVHLDKV-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       147 ~~~d~~~~~~~~~-~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +  |..+.+.... .. .+.+|+|+-.-.-          ...+....+.|+++|.++..
T Consensus       226 v--~~~~~~~~~i~~~-~gg~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          226 V--DSRQTPVEDVPDV-YEQMDFIYEATGF----------PKHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             E--ETTTSCGGGHHHH-SCCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             c--CCCccCHHHHHHh-CCCCCEEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence            1  2221111100 00 1379999854321          13567788999999998764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.91  E-value=1.2  Score=31.96  Aligned_cols=111  Identities=17%  Similarity=0.223  Sum_probs=62.4

Q ss_pred             CCeEEEecCCC-chhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccccC
Q 027388           85 GDVVLDLACGK-GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLA  161 (224)
Q Consensus        85 ~~~iLDiGcG~-G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~  161 (224)
                      +.+|+=+|+|. |......+... ...|+++|.++..++.++..                .+.++.+|..+... .... 
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~----------------g~~~~~gd~~~~~~l~~~~-  101 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE----------------GRNVISGDATDPDFWERIL-  101 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT----------------TCCEEECCTTCHHHHHTBC-
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC----------------CCCEEEcCCCCHHHHHhcc-
Confidence            56788888764 33333333334 56899999999887776532                14556677654221 1100 


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                      ....+|+|+..-.      . ......+-...+.+.|++.++....+.. ..+.+.+.|
T Consensus       102 ~~~~ad~vi~~~~------~-~~~~~~~~~~~~~~~~~~~ii~~~~~~~-~~~~l~~~G  152 (183)
T 3c85_A          102 DTGHVKLVLLAMP------H-HQGNQTALEQLQRRNYKGQIAAIAEYPD-QLEGLLESG  152 (183)
T ss_dssp             SCCCCCEEEECCS------S-HHHHHHHHHHHHHTTCCSEEEEEESSHH-HHHHHHHHT
T ss_pred             CCCCCCEEEEeCC------C-hHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHcC
Confidence            1356898886431      1 2222333345556677778877765544 344566555

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=93.73  E-value=0.069  Score=42.74  Aligned_cols=97  Identities=14%  Similarity=0.139  Sum_probs=61.1

Q ss_pred             hcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--cc
Q 027388           82 ARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD  157 (224)
Q Consensus        82 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~  157 (224)
                      ..++.+||=+|+  |.|..+..+++....++++++.++..++.+++.-.               -..+...-.++.  ..
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga---------------~~~~~~~~~~~~~~~~  202 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGA---------------WETIDYSHEDVAKRVL  202 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC---------------SEEEETTTSCHHHHHH
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---------------CEEEeCCCccHHHHHH
Confidence            457889999983  34667777776666699999999999988876432               111111111110  00


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .. .....+|+|+.+-.-           ..+....+.|+++|.+++.
T Consensus       203 ~~-~~~~g~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~  238 (325)
T 3jyn_A          203 EL-TDGKKCPVVYDGVGQ-----------DTWLTSLDSVAPRGLVVSF  238 (325)
T ss_dssp             HH-TTTCCEEEEEESSCG-----------GGHHHHHTTEEEEEEEEEC
T ss_pred             HH-hCCCCceEEEECCCh-----------HHHHHHHHHhcCCCEEEEE
Confidence            00 023579999864321           2456778899999998874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=93.71  E-value=1  Score=30.43  Aligned_cols=110  Identities=15%  Similarity=0.083  Sum_probs=59.6

Q ss_pred             CCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           85 GDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      +.+|+=+|+|.  .+..++.   ....+++++|.++..++...+...               +.++.+|..+...-. ..
T Consensus         4 ~m~i~IiG~G~--iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~---------------~~~~~~d~~~~~~l~-~~   65 (140)
T 1lss_A            4 GMYIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID---------------ALVINGDCTKIKTLE-DA   65 (140)
T ss_dssp             -CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS---------------SEEEESCTTSHHHHH-HT
T ss_pred             CCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcC---------------cEEEEcCCCCHHHHH-Hc
Confidence            35788888754  4444332   344689999999887766654322               455666654322100 00


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~gf  221 (224)
                      ....+|+|+..-..       ......+..+.+.+.++ .++....+.. ..+.+++.|+
T Consensus        66 ~~~~~d~vi~~~~~-------~~~~~~~~~~~~~~~~~-~ii~~~~~~~-~~~~l~~~g~  116 (140)
T 1lss_A           66 GIEDADMYIAVTGK-------EEVNLMSSLLAKSYGIN-KTIARISEIE-YKDVFERLGV  116 (140)
T ss_dssp             TTTTCSEEEECCSC-------HHHHHHHHHHHHHTTCC-CEEEECSSTT-HHHHHHHTTC
T ss_pred             CcccCCEEEEeeCC-------chHHHHHHHHHHHcCCC-EEEEEecCHh-HHHHHHHcCC
Confidence            13578998875321       23334455556667775 4555444433 3445666664

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.61  E-value=0.33  Score=39.05  Aligned_cols=96  Identities=17%  Similarity=0.086  Sum_probs=61.2

Q ss_pred             hcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++.+||-+|+  |.|..+..++.....++++++.++..++.+++.-.               ...+  |..+......
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga---------------~~~~--d~~~~~~~~~  226 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGA---------------DETV--NYTHPDWPKE  226 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC---------------SEEE--ETTSTTHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC---------------CEEE--cCCcccHHHH
Confidence            457889999998  55777777776666699999999998888865322               0111  2211110000


Q ss_pred             ---cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 ---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ---~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                         ......+|+|+..-. .          ..+....+.|+++|.++..
T Consensus       227 ~~~~~~~~~~d~vi~~~g-~----------~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          227 VRRLTGGKGADKVVDHTG-A----------LYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             HHHHTTTTCEEEEEESSC-S----------SSHHHHHHHEEEEEEEEES
T ss_pred             HHHHhCCCCceEEEECCC-H----------HHHHHHHHhhccCCEEEEE
Confidence               001247999986543 2          1356678889999988764

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.56  E-value=0.18  Score=40.55  Aligned_cols=96  Identities=18%  Similarity=0.178  Sum_probs=61.3

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc---cc
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE---VH  155 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~  155 (224)
                      ...++++||-.|+  |.|..+..++.....++++++.++..++.+++.+.             .. ..+  |..+   +.
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g-------------~~-~~~--d~~~~~~~~  215 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFG-------------FD-DAF--NYKEESDLT  215 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSC-------------CS-EEE--ETTSCSCSH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-------------Cc-eEE--ecCCHHHHH
Confidence            3567889999997  44667777776666689999999988888864332             00 111  2211   10


Q ss_pred             --cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 --LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 --~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ....  ..+.+|+++.+-.       .    ..+....+.|+++|.+++.
T Consensus       216 ~~~~~~--~~~~~d~vi~~~g-------~----~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          216 AALKRC--FPNGIDIYFENVG-------G----KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             HHHHHH--CTTCEEEEEESSC-------H----HHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHH--hCCCCcEEEECCC-------H----HHHHHHHHHHhcCCEEEEE
Confidence              0000  1257999986532       1    2567788999999998764

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.48  E-value=0.088  Score=42.25  Aligned_cols=99  Identities=17%  Similarity=0.141  Sum_probs=61.3

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc-
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-  157 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-  157 (224)
                      ...++.+||=+|+  |.|..+..+++....++++++.++..++.+++.-.               -..+..+-.++... 
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga---------------~~~~~~~~~~~~~~~  209 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGA---------------EYLINASKEDILRQV  209 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---------------SEEEETTTSCHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---------------cEEEeCCCchHHHHH
Confidence            3467889999995  34667777776666799999999998888866422               11111111111000 


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ........+|+|+.+-.-           ..+....+.|+++|.+++.
T Consensus       210 ~~~~~~~g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          210 LKFTNGKGVDASFDSVGK-----------DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             HHHTTTSCEEEEEECCGG-----------GGHHHHHHHEEEEEEEEEC
T ss_pred             HHHhCCCCceEEEECCCh-----------HHHHHHHHHhccCCEEEEE
Confidence            000023579999864321           2456778899999998864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.28  E-value=0.57  Score=32.86  Aligned_cols=113  Identities=14%  Similarity=0.175  Sum_probs=59.7

Q ss_pred             cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-cccc
Q 027388           83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~  160 (224)
                      ..+.+|+=+|+|. |......+......|+++|.++..++.++..               ..+.++.+|..+... ... 
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~---------------~g~~~~~~d~~~~~~l~~~-   80 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSE---------------FSGFTVVGDAAEFETLKEC-   80 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTT---------------CCSEEEESCTTSHHHHHTT-
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhc---------------CCCcEEEecCCCHHHHHHc-
Confidence            4678899999865 3333333333455899999998655433211               113455566543211 000 


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                       ....+|+|+..-.       .......+..+.+.+.+...++...-+... .+.+++.|
T Consensus        81 -~~~~ad~Vi~~~~-------~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~-~~~l~~~G  131 (155)
T 2g1u_A           81 -GMEKADMVFAFTN-------DDSTNFFISMNARYMFNVENVIARVYDPEK-IKIFEENG  131 (155)
T ss_dssp             -TGGGCSEEEECSS-------CHHHHHHHHHHHHHTSCCSEEEEECSSGGG-HHHHHTTT
T ss_pred             -CcccCCEEEEEeC-------CcHHHHHHHHHHHHHCCCCeEEEEECCHHH-HHHHHHCC
Confidence             1246898886532       133344445555555666666666544432 34455444

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=93.24  E-value=0.23  Score=39.88  Aligned_cols=98  Identities=11%  Similarity=0.040  Sum_probs=60.2

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec---cccccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG---DCYEVH  155 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~---d~~~~~  155 (224)
                      ...++.+||=.|+|. |.++.++++.. ...++++|.++..++.+++.-.               ..++..   +..+..
T Consensus       157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa---------------~~~i~~~~~~~~~~~  221 (346)
T 4a2c_A          157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA---------------MQTFNSSEMSAPQMQ  221 (346)
T ss_dssp             TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC---------------SEEEETTTSCHHHHH
T ss_pred             ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC---------------eEEEeCCCCCHHHHH
Confidence            456788999999876 44566666554 4567899999999999887543               112211   111110


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .  .......+|+|+..-..          ...+....+++++||.+++.
T Consensus       222 ~--~~~~~~g~d~v~d~~G~----------~~~~~~~~~~l~~~G~~v~~  259 (346)
T 4a2c_A          222 S--VLRELRFNQLILETAGV----------PQTVELAVEIAGPHAQLALV  259 (346)
T ss_dssp             H--HHGGGCSSEEEEECSCS----------HHHHHHHHHHCCTTCEEEEC
T ss_pred             H--hhcccCCcccccccccc----------cchhhhhhheecCCeEEEEE
Confidence            0  00023578888754321          23566778899999998864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=93.21  E-value=0.15  Score=40.28  Aligned_cols=92  Identities=16%  Similarity=0.060  Sum_probs=59.8

Q ss_pred             hcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-ccccc
Q 027388           82 ARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDK  158 (224)
Q Consensus        82 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~  158 (224)
                      ..++.+||-+|+  |.|..+..+++....++++++.++..++.+++.-.               -..+  |..+ .....
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga---------------~~~~--~~~~~~~~~~  185 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGA---------------EEAA--TYAEVPERAK  185 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTC---------------SEEE--EGGGHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC---------------CEEE--ECCcchhHHH
Confidence            567899999998  34667777776666699999999988888865321               1111  2211 11111


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                         ....+|+|+. -.-           ..+....+.|+++|.++..
T Consensus       186 ---~~~~~d~vid-~g~-----------~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          186 ---AWGGLDLVLE-VRG-----------KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             ---HTTSEEEEEE-CSC-----------TTHHHHHTTEEEEEEEEEC
T ss_pred             ---HhcCceEEEE-CCH-----------HHHHHHHHhhccCCEEEEE
Confidence               1157999986 321           1456788999999988753

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.18  E-value=0.26  Score=39.73  Aligned_cols=94  Identities=15%  Similarity=0.140  Sum_probs=59.4

Q ss_pred             CCCeEEEec-CCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec--cccccccccc
Q 027388           84 RGDVVLDLA-CGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG--DCYEVHLDKV  159 (224)
Q Consensus        84 ~~~~iLDiG-cG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~--d~~~~~~~~~  159 (224)
                      ++.+||=+| +|. |..+.++++....++++++.++..++.+++.-.               -.++..  ++.+. ....
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~-~~~~  213 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGA---------------DIVLNHKESLLNQ-FKTQ  213 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTC---------------SEEECTTSCHHHH-HHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC---------------cEEEECCccHHHH-HHHh
Confidence            688999884 443 667777776666699999999999998887432               011111  11100 0000


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ....+|+|+..-.          -...+..+.+.|+++|.++..
T Consensus       214 --~~~g~Dvv~d~~g----------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          214 --GIELVDYVFCTFN----------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             --TCCCEEEEEESSC----------HHHHHHHHHHHEEEEEEEEES
T ss_pred             --CCCCccEEEECCC----------chHHHHHHHHHhccCCEEEEE
Confidence              2357999986422          123567788999999998753

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.16  E-value=0.1  Score=42.12  Aligned_cols=94  Identities=19%  Similarity=0.068  Sum_probs=57.6

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc-
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL-  160 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-  160 (224)
                      ++.+||-+|+|. |..+.++++.... +++++|.++..++.+++. .               ..++  |..+....... 
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a---------------~~v~--~~~~~~~~~~~~  225 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A---------------DRLV--NPLEEDLLEVVR  225 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C---------------SEEE--CTTTSCHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H---------------Hhcc--CcCccCHHHHHH
Confidence            788999999854 6677777766555 899999998777666443 2               1111  11111100000 


Q ss_pred             -CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 -ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 -~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       .....+|+|+..-.-          ...+....+.|+++|.++..
T Consensus       226 ~~~~~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          226 RVTGSGVEVLLEFSGN----------EAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             HHHSSCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HhcCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence             002479999854321          13467788899999988764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=93.03  E-value=0.22  Score=40.31  Aligned_cols=97  Identities=18%  Similarity=0.066  Sum_probs=60.8

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--c
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (224)
                      ...++.+||=+|+  |.|..+..+++....++++++.++..++.+++.-.               ...+..+-.+..  .
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~~~~~~~~~~~~~~  228 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGA---------------KRGINYRSEDFAAVI  228 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC---------------SEEEETTTSCHHHHH
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC---------------CEEEeCCchHHHHHH
Confidence            3467889999854  34667777776666799999999999988876432               111111111110  0


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ...  ....+|+++.+-.-           ..+....+.|+++|.+++.
T Consensus       229 ~~~--~~~g~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~  264 (353)
T 4dup_A          229 KAE--TGQGVDIILDMIGA-----------AYFERNIASLAKDGCLSII  264 (353)
T ss_dssp             HHH--HSSCEEEEEESCCG-----------GGHHHHHHTEEEEEEEEEC
T ss_pred             HHH--hCCCceEEEECCCH-----------HHHHHHHHHhccCCEEEEE
Confidence            000  13579999865432           1456678899999988764

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=92.98  E-value=0.18  Score=40.00  Aligned_cols=89  Identities=13%  Similarity=-0.038  Sum_probs=58.6

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ...++.+||=+|+|. |.++.++++....++++++ ++...+.+++.-.               -.++ -|     ... 
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa---------------~~v~-~d-----~~~-  195 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGV---------------RHLY-RE-----PSQ-  195 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTE---------------EEEE-SS-----GGG-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCC---------------CEEE-cC-----HHH-
Confidence            456789999999954 7777788776666999999 9999999876432               1222 12     111 


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        -...+|+|+-.-.-       +    .+....+.|+++|.++..
T Consensus       196 --v~~g~Dvv~d~~g~-------~----~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          196 --VTQKYFAIFDAVNS-------Q----NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             --CCSCEEEEECC------------------TTGGGEEEEEEEEEE
T ss_pred             --hCCCccEEEECCCc-------h----hHHHHHHHhcCCCEEEEE
Confidence              14689999843211       1    124568899999998865

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=92.75  E-value=0.27  Score=41.02  Aligned_cols=44  Identities=16%  Similarity=0.183  Sum_probs=35.0

Q ss_pred             CCeEEEecCCCchhHHHHHhh------cCCeEEEEeCChhHHHHHHHhcc
Q 027388           85 GDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~------~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ...|+|+|+|+|.++..++..      ...+++.||+|+...+.-++++.
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            579999999999988877642      13479999999998877776654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.71  E-value=1.3  Score=36.82  Aligned_cols=111  Identities=18%  Similarity=0.138  Sum_probs=70.0

Q ss_pred             CCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        85 ~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      ...|+=+|+|. |......+......|+++|.++..++.+++.                .+.++.+|..+...-.. ...
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~----------------g~~vi~GDat~~~~L~~-agi   66 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF----------------GMKVFYGDATRMDLLES-AGA   66 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT----------------TCCCEESCTTCHHHHHH-TTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC----------------CCeEEEcCCCCHHHHHh-cCC
Confidence            45678788765 3333333334556899999999999888643                15678899876432110 024


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                      ..+|+|++...       .+.....+....+.+.|...++....+.. -...|.+.|
T Consensus        67 ~~A~~viv~~~-------~~~~n~~i~~~ar~~~p~~~Iiara~~~~-~~~~L~~~G  115 (413)
T 3l9w_A           67 AKAEVLINAID-------DPQTNLQLTEMVKEHFPHLQIIARARDVD-HYIRLRQAG  115 (413)
T ss_dssp             TTCSEEEECCS-------SHHHHHHHHHHHHHHCTTCEEEEEESSHH-HHHHHHHTT
T ss_pred             CccCEEEECCC-------ChHHHHHHHHHHHHhCCCCeEEEEECCHH-HHHHHHHCC
Confidence            67898876532       24455566667777888888887776644 344455555

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=92.68  E-value=0.49  Score=37.99  Aligned_cols=101  Identities=13%  Similarity=0.072  Sum_probs=60.4

Q ss_pred             hhcCCCeEEEecCCCc-hhHHHHHh-hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACGKG-GDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G-~~~~~l~~-~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+||=+|+|.+ .++..+++ ....+++++|.++..++.+++...            ..-+.+...|..+.-.. 
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga------------~~~i~~~~~~~~~~v~~-  226 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGA------------DVTINSGDVNPVDEIKK-  226 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTC------------SEEEEC-CCCHHHHHHH-
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCC------------eEEEeCCCCCHHHHhhh-
Confidence            4567889999999874 34445544 356799999999998888876644            11111112222111000 


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .. ....+|.++....-          ...+....+.++++|.+++.
T Consensus       227 ~t-~g~g~d~~~~~~~~----------~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          227 IT-GGLGVQSAIVCAVA----------RIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             HT-TSSCEEEEEECCSC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred             hc-CCCCceEEEEeccC----------cchhheeheeecCCceEEEE
Confidence            00 23467777643221          23567778899999988764

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=92.53  E-value=0.41  Score=38.73  Aligned_cols=97  Identities=11%  Similarity=0.032  Sum_probs=59.1

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+||-.|+  |.|..+..++.....+++++|.++..++.+++.-.              . ..+  |..+.....
T Consensus       159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~--------------~-~~~--~~~~~~~~~  221 (354)
T 2j8z_A          159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGA--------------A-AGF--NYKKEDFSE  221 (354)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC--------------S-EEE--ETTTSCHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC--------------c-EEE--ecCChHHHH
Confidence            3457889999985  44666666666666689999999988888854322              0 111  111111000


Q ss_pred             -c--cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 -V--LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 -~--~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       .  ......+|+++.+-.-.           .+....+.|+++|.+++.
T Consensus       222 ~~~~~~~~~~~d~vi~~~G~~-----------~~~~~~~~l~~~G~iv~~  260 (354)
T 2j8z_A          222 ATLKFTKGAGVNLILDCIGGS-----------YWEKNVNCLALDGRWVLY  260 (354)
T ss_dssp             HHHHHTTTSCEEEEEESSCGG-----------GHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHhcCCCceEEEECCCch-----------HHHHHHHhccCCCEEEEE
Confidence             0  00234799998654321           356677889999998864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.51  E-value=1.7  Score=29.64  Aligned_cols=108  Identities=8%  Similarity=-0.042  Sum_probs=60.7

Q ss_pred             CCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           85 GDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+|+=+|+|.  ++..++.   .....++++|.++..++.++..                .+.++.+|..+...-... 
T Consensus         6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~----------------~~~~~~gd~~~~~~l~~~-   66 (141)
T 3llv_A            6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLEDE----------------GFDAVIADPTDESFYRSL-   66 (141)
T ss_dssp             CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT----------------TCEEEECCTTCHHHHHHS-
T ss_pred             CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC----------------CCcEEECCCCCHHHHHhC-
Confidence            45788899854  4444332   3456899999999888777543                156778887653221000 


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                      ....+|+|+..-.      . ......+....+.+. ...++....+.. ..+.+.+.|
T Consensus        67 ~~~~~d~vi~~~~------~-~~~n~~~~~~a~~~~-~~~iia~~~~~~-~~~~l~~~G  116 (141)
T 3llv_A           67 DLEGVSAVLITGS------D-DEFNLKILKALRSVS-DVYAIVRVSSPK-KKEEFEEAG  116 (141)
T ss_dssp             CCTTCSEEEECCS------C-HHHHHHHHHHHHHHC-CCCEEEEESCGG-GHHHHHHTT
T ss_pred             CcccCCEEEEecC------C-HHHHHHHHHHHHHhC-CceEEEEEcChh-HHHHHHHcC
Confidence            2357898876432      1 223333344444455 555655554433 334455555

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.33  E-value=0.38  Score=38.32  Aligned_cols=96  Identities=14%  Similarity=0.093  Sum_probs=59.3

Q ss_pred             hcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++++||-.|+  |.|..+..++.....+++++|.++..++.+++.-.              . ..+  |..+......
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~--------------~-~~~--~~~~~~~~~~  200 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA--------------W-QVI--NYREEDLVER  200 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC--------------S-EEE--ETTTSCHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC--------------C-EEE--ECCCccHHHH
Confidence            457889999994  44666666665555699999999988888865321              0 111  2111110000


Q ss_pred             ---cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 ---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ---~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                         ......+|+++.+-. .          ..+..+.+.|+++|.+++.
T Consensus       201 ~~~~~~~~~~D~vi~~~g-~----------~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          201 LKEITGGKKVRVVYDSVG-R----------DTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             HHHHTTTCCEEEEEECSC-G----------GGHHHHHHTEEEEEEEEEC
T ss_pred             HHHHhCCCCceEEEECCc-h----------HHHHHHHHHhcCCCEEEEE
Confidence               001347999986543 1          2457788899999988764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=92.28  E-value=0.17  Score=41.01  Aligned_cols=97  Identities=20%  Similarity=0.130  Sum_probs=59.5

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+||-.|+  |.|..+..++.....++++++.++..++.+++.-.              . ..+  |..+.....
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga--------------~-~~~--d~~~~~~~~  229 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA--------------H-EVF--NHREVNYID  229 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC--------------S-EEE--ETTSTTHHH
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCC--------------C-EEE--eCCCchHHH
Confidence            3467889999997  34666666666566689999999988887754321              0 111  211111000


Q ss_pred             c---cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~---~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .   ......+|+++.+-.        .   ..+....+.|+++|.+++.
T Consensus       230 ~~~~~~~~~~~D~vi~~~G--------~---~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          230 KIKKYVGEKGIDIIIEMLA--------N---VNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             HHHHHHCTTCEEEEEESCH--------H---HHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHcCCCCcEEEEECCC--------h---HHHHHHHHhccCCCEEEEE
Confidence            0   002347999986532        1   2456778999999998764

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=92.25  E-value=1.5  Score=41.79  Aligned_cols=45  Identities=20%  Similarity=0.168  Sum_probs=37.7

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhcc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ...+++|+-||.|++...+...+. ..+.++|+++.+++..+.++.
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p  895 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP  895 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC
Confidence            456899999999999998876665 457799999999999888765

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=91.94  E-value=2.2  Score=33.89  Aligned_cols=90  Identities=20%  Similarity=0.123  Sum_probs=53.6

Q ss_pred             CeEEEecCCC-ch-hHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           86 DVVLDLACGK-GG-DLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        86 ~~iLDiGcG~-G~-~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .+|.=||+|. |. ++..+...+. .+|+++|.++..++.+.+.-.               +.....+..+..       
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~---------------~~~~~~~~~~~~-------   91 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI---------------IDEGTTSIAKVE-------   91 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS---------------CSEEESCTTGGG-------
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC---------------cchhcCCHHHHh-------
Confidence            6788898775 22 3333332232 289999999988877764311               111222332200       


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      ....|+|+..-..       .....++.++...+++|.+++-
T Consensus        92 ~~~aDvVilavp~-------~~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A           92 DFSPDFVMLSSPV-------RTFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             GGCCSEEEECSCG-------GGHHHHHHHHHHHSCTTCEEEE
T ss_pred             hccCCEEEEeCCH-------HHHHHHHHHHhhccCCCcEEEE
Confidence            2467999865432       3356778888888999876654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=91.87  E-value=0.29  Score=39.14  Aligned_cols=95  Identities=20%  Similarity=0.242  Sum_probs=60.1

Q ss_pred             hcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc--
Q 027388           82 ARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--  157 (224)
Q Consensus        82 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--  157 (224)
                      ..++.+||-.|+  |.|..+..++.....+++++|.++..++.+++.-.              . ..+  |..+....  
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~--------------~-~~~--d~~~~~~~~~  205 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGC--------------H-HTI--NYSTQDFAEV  205 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC--------------S-EEE--ETTTSCHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC--------------C-EEE--ECCCHHHHHH
Confidence            457889999995  55667777766666699999999988888765321              0 111  22111100  


Q ss_pred             --cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 --KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 --~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ... ....+|+++.+-.-           ..+....+.|+++|.++..
T Consensus       206 i~~~~-~~~~~d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~  243 (333)
T 1wly_A          206 VREIT-GGKGVDVVYDSIGK-----------DTLQKSLDCLRPRGMCAAY  243 (333)
T ss_dssp             HHHHH-TTCCEEEEEECSCT-----------TTHHHHHHTEEEEEEEEEC
T ss_pred             HHHHh-CCCCCeEEEECCcH-----------HHHHHHHHhhccCCEEEEE
Confidence              000 13479999865321           2456788899999988764

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=91.80  E-value=0.24  Score=38.35  Aligned_cols=76  Identities=14%  Similarity=0.215  Sum_probs=47.3

Q ss_pred             eeEEeccccccccccccCCCCCeeEEEEccccccc---cC---CH----HHHHHHHHHHHhhccCCeEEEEEeCCh--HH
Q 027388          144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS---WS---TE----ARARRALANVSALLRPGGTFIGTMPDA--NV  211 (224)
Q Consensus       144 v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~---~~---~~----~~~~~~l~~~~~~lk~gG~li~~~~~~--~~  211 (224)
                      ..++++|..+... ..  +.++||+|++.-....-   .+   +.    ......+..+.++|++||.+++...+.  ..
T Consensus         5 ~~l~~gD~~~~l~-~l--~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~~~~~   81 (260)
T 1g60_A            5 NKIHQMNCFDFLD-QV--ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAF   81 (260)
T ss_dssp             SSEEECCHHHHHH-HS--CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHH
T ss_pred             CeEEechHHHHHH-hc--cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcHHHHH
Confidence            4677888754321 11  35789999987543211   00   11    235667888899999999999885432  33


Q ss_pred             HHHHhhhcccc
Q 027388          212 IIKKLREEHFC  222 (224)
Q Consensus       212 ~~~~~~~~gf~  222 (224)
                      +...+.+.||.
T Consensus        82 ~~~~~~~~gf~   92 (260)
T 1g60_A           82 ICQYLVSKGMI   92 (260)
T ss_dssp             HHHHHHHTTCE
T ss_pred             HHHHHHhhccc
Confidence            45567777763

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=91.56  E-value=0.62  Score=37.66  Aligned_cols=96  Identities=20%  Similarity=0.114  Sum_probs=58.5

Q ss_pred             hhc-CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-cccccccc
Q 027388           81 YAR-RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLD  157 (224)
Q Consensus        81 ~~~-~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~  157 (224)
                      ... ++.+||=+|+|. |.++.++++....++++++.++..++.+++.+-.           .   .++.. +...+.  
T Consensus       176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa-----------~---~vi~~~~~~~~~--  239 (357)
T 2cf5_A          176 GLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGA-----------D---DYVIGSDQAKMS--  239 (357)
T ss_dssp             STTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCC-----------S---CEEETTCHHHHH--
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCC-----------c---eeeccccHHHHH--
Confidence            345 788999999764 5566677665556899999999888887744320           0   11111 100010  


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .   ..+.+|+|+-.-.-.          ..+....+.|+++|.++..
T Consensus       240 ~---~~~g~D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~  274 (357)
T 2cf5_A          240 E---LADSLDYVIDTVPVH----------HALEPYLSLLKLDGKLILM  274 (357)
T ss_dssp             H---STTTEEEEEECCCSC----------CCSHHHHTTEEEEEEEEEC
T ss_pred             H---hcCCCCEEEECCCCh----------HHHHHHHHHhccCCEEEEe
Confidence            0   124799998543211          1234567899999998764

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=91.56  E-value=1  Score=36.57  Aligned_cols=96  Identities=15%  Similarity=0.116  Sum_probs=58.5

Q ss_pred             hhc-CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc-cc
Q 027388           81 YAR-RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-LD  157 (224)
Q Consensus        81 ~~~-~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~  157 (224)
                      ... ++.+||=+|+|. |..+.++++....++++++.++..++.+++.+..              ..++  |..+.. ..
T Consensus       183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa--------------~~v~--~~~~~~~~~  246 (366)
T 1yqd_A          183 GLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA--------------DSFL--VSRDQEQMQ  246 (366)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCC--------------SEEE--ETTCHHHHH
T ss_pred             CcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC--------------ceEE--eccCHHHHH
Confidence            345 788999999754 5566667666566899999999888887644330              0111  111110 10


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .   ..+.+|+|+..-....          .+....+.|+++|.++..
T Consensus       247 ~---~~~~~D~vid~~g~~~----------~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          247 A---AAGTLDGIIDTVSAVH----------PLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             H---TTTCEEEEEECCSSCC----------CSHHHHHHEEEEEEEEEC
T ss_pred             H---hhCCCCEEEECCCcHH----------HHHHHHHHHhcCCEEEEE
Confidence            0   1247999986533211          234566788999988763

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=91.51  E-value=0.62  Score=36.98  Aligned_cols=90  Identities=13%  Similarity=0.045  Sum_probs=58.4

Q ss_pred             eEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           87 VVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        87 ~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      +||=+|+  |.|.++.++++....++++++.++...+.+++.-.            .  ..+-..+...  ....  ..+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa------------~--~vi~~~~~~~--~~~~--~~~  210 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGA------------N--RILSRDEFAE--SRPL--EKQ  210 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTC------------S--EEEEGGGSSC--CCSS--CCC
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC------------C--EEEecCCHHH--HHhh--cCC
Confidence            4888887  44778888887766699999999999999976532            1  1111111111  1000  235


Q ss_pred             CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .+|+++-.-       ..    ..+....+.|+++|.++..
T Consensus       211 ~~d~v~d~~-------g~----~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          211 LWAGAIDTV-------GD----KVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             CEEEEEESS-------CH----HHHHHHHHTEEEEEEEEEC
T ss_pred             CccEEEECC-------Cc----HHHHHHHHHHhcCCEEEEE
Confidence            799887432       22    2678888999999998864

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=91.49  E-value=0.52  Score=37.53  Aligned_cols=96  Identities=15%  Similarity=0.075  Sum_probs=57.5

Q ss_pred             hcCCC-eEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe-ccccccccc
Q 027388           82 ARRGD-VVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLD  157 (224)
Q Consensus        82 ~~~~~-~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~  157 (224)
                      ..++. +||=+|+  |.|..+.++++....++++++.++..++.+++.-.            .   .++. .+.......
T Consensus       146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa------------~---~~i~~~~~~~~~~~  210 (328)
T 1xa0_A          146 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGA------------K---EVLAREDVMAERIR  210 (328)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTC------------S---EEEECC--------
T ss_pred             CCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC------------c---EEEecCCcHHHHHH
Confidence            34554 7999997  44667777776666689999999888888865322            0   1111 111000000


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..  ....+|+|+-.-.-           ..+....+.++++|.+++.
T Consensus       211 ~~--~~~~~d~vid~~g~-----------~~~~~~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          211 PL--DKQRWAAAVDPVGG-----------RTLATVLSRMRYGGAVAVS  245 (328)
T ss_dssp             -C--CSCCEEEEEECSTT-----------TTHHHHHHTEEEEEEEEEC
T ss_pred             Hh--cCCcccEEEECCcH-----------HHHHHHHHhhccCCEEEEE
Confidence            00  23479998754321           1356778899999998864

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=91.35  E-value=0.4  Score=38.36  Aligned_cols=62  Identities=21%  Similarity=0.311  Sum_probs=40.8

Q ss_pred             eeEE-eccccccccccccCCCCCeeEEEEccccccc---c---C-CHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          144 ARLI-CGDCYEVHLDKVLADDAPFDICSCQFAMHYS---W---S-TEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       144 v~~~-~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~---~---~-~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ..++ ++|..+... ..  +.++||+|++.-.....   +   . -.......+..+.++|+|||.+++....
T Consensus        39 ~~l~i~gD~l~~L~-~l--~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~  108 (319)
T 1eg2_A           39 RHVYDVCDCLDTLA-KL--PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL  108 (319)
T ss_dssp             EEEEEECCHHHHHH-TS--CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             ceEEECCcHHHHHH-hC--ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCc
Confidence            5667 898765321 11  45789999987543211   0   0 0134677888999999999999987553

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=91.31  E-value=0.91  Score=36.59  Aligned_cols=98  Identities=11%  Similarity=-0.028  Sum_probs=59.9

Q ss_pred             hhcCC--CeEEEecC--CCchhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           81 YARRG--DVVLDLAC--GKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        81 ~~~~~--~~iLDiGc--G~G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ...++  .+||=.|+  |.|..+..++..... ++++++.++..++.+++.+.             .. ..  .|..+..
T Consensus       155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g-------------~~-~~--~d~~~~~  218 (357)
T 2zb4_A          155 HITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELG-------------FD-AA--INYKKDN  218 (357)
T ss_dssp             CCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC-------------CS-EE--EETTTSC
T ss_pred             CCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC-------------Cc-eE--EecCchH
Confidence            45677  89999998  335566666655555 89999999988887765332             00 11  1221111


Q ss_pred             ccccc--CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 LDKVL--ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 ~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .....  ...+.+|+++.+-.       .    ..+....+.|+++|.+++.
T Consensus       219 ~~~~~~~~~~~~~d~vi~~~G-------~----~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          219 VAEQLRESCPAGVDVYFDNVG-------G----NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             HHHHHHHHCTTCEEEEEESCC-------H----HHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHhcCCCCCEEEECCC-------H----HHHHHHHHHhccCcEEEEE
Confidence            00000  01237999986532       1    3567788999999998764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.10  E-value=2.1  Score=31.74  Aligned_cols=107  Identities=10%  Similarity=0.038  Sum_probs=62.6

Q ss_pred             eEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccccCC
Q 027388           87 VVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLAD  162 (224)
Q Consensus        87 ~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~  162 (224)
                      +|+=+|+  |.++..++.   .....++++|.++..++...+...               +.++.+|..+... ...  .
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~---------------~~~i~gd~~~~~~l~~a--~   62 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLK---------------ATIIHGDGSHKEILRDA--E   62 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSS---------------SEEEESCTTSHHHHHHH--T
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcC---------------CeEEEcCCCCHHHHHhc--C
Confidence            3555665  556655543   345689999999988877654432               5678888765321 111  2


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                      ...+|+|++...       .+.....+....+.+.+...++....+.. ..+.++..|
T Consensus        63 i~~ad~vi~~~~-------~d~~n~~~~~~a~~~~~~~~iia~~~~~~-~~~~l~~~G  112 (218)
T 3l4b_C           63 VSKNDVVVILTP-------RDEVNLFIAQLVMKDFGVKRVVSLVNDPG-NMEIFKKMG  112 (218)
T ss_dssp             CCTTCEEEECCS-------CHHHHHHHHHHHHHTSCCCEEEECCCSGG-GHHHHHHHT
T ss_pred             cccCCEEEEecC-------CcHHHHHHHHHHHHHcCCCeEEEEEeCcc-hHHHHHHCC
Confidence            357898886532       23444555556666666666666544432 234445554

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=90.99  E-value=5.2  Score=32.11  Aligned_cols=119  Identities=8%  Similarity=-0.017  Sum_probs=71.4

Q ss_pred             CCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccc-----------ccc---ccCCCCeeEE
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHH-----------QRR---KKFSFPARLI  147 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~-----------~~~---~~~~~~v~~~  147 (224)
                      +...|+-+|||.-.....+...  ....++=||.-. .++.-++.+...+...           ...   .-...+.+++
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~-vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v  168 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPM-IVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI  168 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHH-HHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHH-HHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence            4678999999998877777543  234677777744 3333222222100000           000   0014567888


Q ss_pred             eccccccccc-c----ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          148 CGDCYEVHLD-K----VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       148 ~~d~~~~~~~-~----~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .+|+.+.... .    ........-++++=+++.|+  +.+...++|+.+.+...+|..++..
T Consensus       169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL--~~~~~~~ll~~ia~~f~~~~~i~yE  229 (334)
T 3iei_A          169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYM--TPEQSANLLKWAANSFERAMFINYE  229 (334)
T ss_dssp             ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGS--CHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred             ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCC--CHHHHHHHHHHHHHhCCCceEEEEe
Confidence            9998764211 1    01133455677788889998  7888999999999887665555554

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=90.90  E-value=2.1  Score=35.42  Aligned_cols=44  Identities=9%  Similarity=-0.003  Sum_probs=36.2

Q ss_pred             CCeEEEecCCCchhHHHHHhhc--CCe----EEEEeCChhHHHHHHHhcc
Q 027388           85 GDVVLDLACGKGGDLIKWDKAK--IGY----YVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~--~~~----~~gvD~s~~~~~~a~~~~~  128 (224)
                      ..+++|+-||.|++...+...+  ...    +.++|+++.+++.-+.++.
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            3589999999999998876554  334    7799999999999888876

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=90.76  E-value=1.5  Score=34.67  Aligned_cols=94  Identities=17%  Similarity=0.080  Sum_probs=57.8

Q ss_pred             HhhcCCCeEEEec-CCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-ccc
Q 027388           80 LYARRGDVVLDLA-CGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHL  156 (224)
Q Consensus        80 ~~~~~~~~iLDiG-cG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~  156 (224)
                      ....++.+||=+| +|. |.++.++++....++++++ ++...+.+++.-.               -.++...-.+ +..
T Consensus       148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa---------------~~~i~~~~~~~~~~  211 (321)
T 3tqh_A          148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGA---------------EQCINYHEEDFLLA  211 (321)
T ss_dssp             TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTC---------------SEEEETTTSCHHHH
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCC---------------CEEEeCCCcchhhh
Confidence            3567889999886 443 7777788776666888887 5555777765422               1122111111 111


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                           ....+|+|+-.-.       .+    .+....+.|+++|.++..
T Consensus       212 -----~~~g~D~v~d~~g-------~~----~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          212 -----ISTPVDAVIDLVG-------GD----VGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             -----CCSCEEEEEESSC-------HH----HHHHHGGGEEEEEEEEEC
T ss_pred             -----hccCCCEEEECCC-------cH----HHHHHHHhccCCCEEEEe
Confidence                 2257999985422       11    236788999999998865

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=90.53  E-value=1.4  Score=36.96  Aligned_cols=46  Identities=22%  Similarity=0.206  Sum_probs=36.1

Q ss_pred             hhcCCCeEEEecC-C-CchhHHHHHhhcCCeEEEEeCChhHHHHHHHh
Q 027388           81 YARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTR  126 (224)
Q Consensus        81 ~~~~~~~iLDiGc-G-~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~  126 (224)
                      ...++.+||=+|+ | .|.++.++++....++++++.++..++.+++.
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l  272 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM  272 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh
Confidence            3467889999997 3 36677777776677899999999999988764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.37  E-value=2.2  Score=37.87  Aligned_cols=116  Identities=12%  Similarity=0.099  Sum_probs=64.2

Q ss_pred             CCCeEEEecCCCchhHHHHHhh-c--------CCeEEEEeCChhHHHHHHHhccCCcccc-------ccc--------cc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA-K--------IGYYVGIDIAEGSIEDCRTRYNGDADHH-------QRR--------KK  139 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~-~--------~~~~~gvD~s~~~~~~a~~~~~~~~~~~-------~~~--------~~  139 (224)
                      +...|+-+|||.-.....+... .        ...++=||..+.+... ++.+.......       ...        .-
T Consensus       107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K-~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  185 (695)
T 2zwa_A          107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIK-IELIKTIPELSKIIGLSEDKDYVDDSNVDFL  185 (695)
T ss_dssp             SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHH-HHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred             CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHH-HHHHHcChHHHHhhccccccccccccccccc
Confidence            4568999999998888777543 1        2244555554432222 22222110000       000        00


Q ss_pred             CCCCeeEEecccccccc-ccc----cC-CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          140 FSFPARLICGDCYEVHL-DKV----LA-DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       140 ~~~~v~~~~~d~~~~~~-~~~----~~-~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      ...+.+++.+|+.+... ...    .+ ....--++++=.++.|+  +.+...++|+.+.+.  ++|.+++
T Consensus       186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl--~~~~~~~ll~~~~~~--~~~~~~~  252 (695)
T 2zwa_A          186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYM--KPERSDSIIEATSKM--ENSHFII  252 (695)
T ss_dssp             ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGS--CHHHHHHHHHHHHTS--SSEEEEE
T ss_pred             cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEc--CHHHHHHHHHHHhhC--CCceEEE
Confidence            01357888999987421 111    11 22344566677788888  778889999888854  5666555

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=90.19  E-value=1.4  Score=35.71  Aligned_cols=91  Identities=14%  Similarity=-0.046  Sum_probs=56.5

Q ss_pred             CCeEEEecCCC-chhHHHHHhhcCCeEEEEeCCh---hHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAE---GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        85 ~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~---~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      +.+||=+|+|. |..+..+++....+++++|.++   ..++.+++.-.                ..+  | .+ ......
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga----------------~~v--~-~~-~~~~~~  240 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKT----------------NYY--N-SS-NGYDKL  240 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTC----------------EEE--E-CT-TCSHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCC----------------cee--c-hH-HHHHHH
Confidence            88999999843 5556666655555999999998   77777765422                111  2 21 110000


Q ss_pred             -CCCCCeeEEEEccccccccCCHHHHHHHH-HHHHhhccCCeEEEEE
Q 027388          161 -ADDAPFDICSCQFAMHYSWSTEARARRAL-ANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 -~~~~~~D~i~~~~~l~~~~~~~~~~~~~l-~~~~~~lk~gG~li~~  205 (224)
                       .....+|+|+..-...          ..+ ....+.|+++|.+++.
T Consensus       241 ~~~~~~~d~vid~~g~~----------~~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          241 KDSVGKFDVIIDATGAD----------VNILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             HHHHCCEEEEEECCCCC----------THHHHHHGGGEEEEEEEEEC
T ss_pred             HHhCCCCCEEEECCCCh----------HHHHHHHHHHHhcCCEEEEE
Confidence             0015799998654321          134 7788999999988764

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=89.96  E-value=0.76  Score=36.58  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=58.2

Q ss_pred             hcCCC-eEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-cccccccc
Q 027388           82 ARRGD-VVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLD  157 (224)
Q Consensus        82 ~~~~~-~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~  157 (224)
                      ..++. +||=+|+  |.|..+.++++....++++++.++..++.+++.-.            .   ..+.. +.......
T Consensus       147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa------------~---~v~~~~~~~~~~~~  211 (330)
T 1tt7_A          147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGA------------S---EVISREDVYDGTLK  211 (330)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTC------------S---EEEEHHHHCSSCCC
T ss_pred             cCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC------------c---EEEECCCchHHHHH
Confidence            34554 8999997  34667777776655689999999888888876422            0   11111 11000000


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..  ....+|+|+..-.       .    ..+....+.++++|.+++.
T Consensus       212 ~~--~~~~~d~vid~~g-------~----~~~~~~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          212 AL--SKQQWQGAVDPVG-------G----KQLASLLSKIQYGGSVAVS  246 (330)
T ss_dssp             SS--CCCCEEEEEESCC-------T----HHHHHHHTTEEEEEEEEEC
T ss_pred             Hh--hcCCccEEEECCc-------H----HHHHHHHHhhcCCCEEEEE
Confidence            00  2347999875431       1    2467788899999998764

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=89.91  E-value=0.86  Score=32.37  Aligned_cols=103  Identities=16%  Similarity=0.127  Sum_probs=60.0

Q ss_pred             CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      -..-|||+|-|+|+.--.+.+. ...+++.+|---          .      .+....+..-.++.+|+.+........-
T Consensus        40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~----------~------~hp~~~P~~e~~ilGdi~~tL~~~~~r~  103 (174)
T 3iht_A           40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAV----------A------SHPDSTPPEAQLILGDIRETLPATLERF  103 (174)
T ss_dssp             CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSC----------C------CCGGGCCCGGGEEESCHHHHHHHHHHHH
T ss_pred             CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeee----------c------cCCCCCCchHheecccHHHHHHHHHHhc
Confidence            4567999999999988887764 456799999422          1      0122334445788888876432100000


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHH-----HHHHhhccCCeEEEEEeC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRAL-----ANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l-----~~~~~~lk~gG~li~~~~  207 (224)
                      ....-++.+....++     ++...+.     --+..+|.|||+++-..|
T Consensus       104 g~~a~LaHaD~G~g~-----~~~d~a~a~~lsplI~~~la~GGi~vS~~p  148 (174)
T 3iht_A          104 GATASLVHADLGGHN-----REKNDRFARLISPLIEPHLAQGGLMVSSDR  148 (174)
T ss_dssp             CSCEEEEEECCCCSC-----HHHHHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CCceEEEEeecCCCC-----cchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence            345555555544443     2222222     235568899998886543

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=89.20  E-value=0.38  Score=39.19  Aligned_cols=97  Identities=21%  Similarity=0.125  Sum_probs=56.9

Q ss_pred             hcCCCeEEEecC-C-CchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGc-G-~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++.+||=.|+ | .|..+.++++....++++++ ++...+.+++.-.               -.++  |..+......
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa---------------~~v~--~~~~~~~~~~  242 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGA---------------DDVI--DYKSGSVEEQ  242 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC---------------SEEE--ETTSSCHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCC---------------CEEE--ECCchHHHHH
Confidence            467889999983 3 46677777766666899988 7777777754321               1111  1111111000


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ......+|+|+..-.-.         ...+....+.++++|.++..
T Consensus       243 ~~~~~g~D~vid~~g~~---------~~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          243 LKSLKPFDFILDNVGGS---------TETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             HHTSCCBSEEEESSCTT---------HHHHGGGGBCSSSCCEEEES
T ss_pred             HhhcCCCCEEEECCCCh---------hhhhHHHHHhhcCCcEEEEe
Confidence            00125799998543211         12345677889999998865

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=89.17  E-value=1.8  Score=35.18  Aligned_cols=97  Identities=7%  Similarity=-0.035  Sum_probs=57.3

Q ss_pred             cCCCeEEEecCC--CchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGcG--~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      .++.+||=+|++  .|.++.++++....+++++. ++..++.+++.-.               ..++...-.++......
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~v~~  226 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGA---------------EEVFDYRAPNLAQTIRT  226 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC---------------SEEEETTSTTHHHHHHH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCC---------------cEEEECCCchHHHHHHH
Confidence            677899999984  57788888877666888875 8888888865422               11221111111000000


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhc-cCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALL-RPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~l-k~gG~li~~  205 (224)
                      ...+.+|+|+-.-.-          ...+....+.| ++||.++..
T Consensus       227 ~t~g~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~iv~~  262 (371)
T 3gqv_A          227 YTKNNLRYALDCITN----------VESTTFCFAAIGRAGGHYVSL  262 (371)
T ss_dssp             HTTTCCCEEEESSCS----------HHHHHHHHHHSCTTCEEEEES
T ss_pred             HccCCccEEEECCCc----------hHHHHHHHHHhhcCCCEEEEE
Confidence            012459999853221          13456677778 689988764

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=89.10  E-value=0.53  Score=37.85  Aligned_cols=95  Identities=16%  Similarity=0.077  Sum_probs=59.9

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc--
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL--  156 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--  156 (224)
                      ...++.+||=+|+  |.|..+..+++....+++++ .++..++.+++.-.                ..+. +-.+...  
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa----------------~~i~-~~~~~~~~~  208 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGA----------------TPID-ASREPEDYA  208 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTS----------------EEEE-TTSCHHHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCC----------------CEec-cCCCHHHHH
Confidence            4567899999995  33777777777666689999 88888888866432                1121 1111100  


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .... ....+|+|+-.-.       .    ..+....+.|+++|.++..
T Consensus       209 ~~~~-~~~g~D~vid~~g-------~----~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          209 AEHT-AGQGFDLVYDTLG-------G----PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             HHHH-TTSCEEEEEESSC-------T----HHHHHHHHHEEEEEEEEES
T ss_pred             HHHh-cCCCceEEEECCC-------c----HHHHHHHHHHhcCCeEEEE
Confidence            0000 2357999985422       1    2567778899999998863

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=88.92  E-value=3.1  Score=31.12  Aligned_cols=107  Identities=11%  Similarity=0.005  Sum_probs=63.6

Q ss_pred             CCCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKV  159 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  159 (224)
                      ...+|+=+|+|  ..+..+++.   ... ++++|.++..++.+.   .              .+.++.+|..+... ...
T Consensus         8 ~~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~---~--------------~~~~i~gd~~~~~~l~~a   67 (234)
T 2aef_A            8 KSRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR---S--------------GANFVHGDPTRVSDLEKA   67 (234)
T ss_dssp             --CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH---T--------------TCEEEESCTTCHHHHHHT
T ss_pred             CCCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh---c--------------CCeEEEcCCCCHHHHHhc
Confidence            34578888875  555555442   234 889999998777665   2              26788898865321 111


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                        .-..+|+|++...       .+.....+....+.+.++..++....+.... +.+++.|
T Consensus        68 --~i~~ad~vi~~~~-------~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~-~~l~~~G  118 (234)
T 2aef_A           68 --NVRGARAVIVDLE-------SDSETIHCILGIRKIDESVRIIAEAERYENI-EQLRMAG  118 (234)
T ss_dssp             --TCTTCSEEEECCS-------CHHHHHHHHHHHHHHCSSSEEEEECSSGGGH-HHHHHHT
T ss_pred             --CcchhcEEEEcCC-------CcHHHHHHHHHHHHHCCCCeEEEEECCHhHH-HHHHHCC
Confidence              2467898886532       1334445555666678877777766554432 4444554

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=88.81  E-value=4.4  Score=28.03  Aligned_cols=111  Identities=13%  Similarity=0.010  Sum_probs=62.7

Q ss_pred             CCeEEEecCCCchhHHHHHh---hcCCeEEEEeCC-hhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccc
Q 027388           85 GDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIA-EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKV  159 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  159 (224)
                      ..+|+=+|+  |..+..++.   .....++.+|.+ +...+.......             ..+.++.+|..+... ...
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-------------~~~~~i~gd~~~~~~l~~a   67 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-------------DNADVIPGDSNDSSVLKKA   67 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-------------TTCEEEESCTTSHHHHHHH
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-------------CCCeEEEcCCCCHHHHHHc
Confidence            346776776  555555443   345689999997 454444443322             126788888764321 111


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                        .-..+|+|++.-.       .+.....+....+.+.|...++....+.. ..+.++..|
T Consensus        68 --~i~~ad~vi~~~~-------~d~~n~~~~~~a~~~~~~~~ii~~~~~~~-~~~~l~~~G  118 (153)
T 1id1_A           68 --GIDRCRAILALSD-------NDADNAFVVLSAKDMSSDVKTVLAVSDSK-NLNKIKMVH  118 (153)
T ss_dssp             --TTTTCSEEEECSS-------CHHHHHHHHHHHHHHTSSSCEEEECSSGG-GHHHHHTTC
T ss_pred             --ChhhCCEEEEecC-------ChHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHcC
Confidence              2357888886532       13445555666667777777776654433 233445554

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=88.49  E-value=7.1  Score=30.02  Aligned_cols=88  Identities=18%  Similarity=0.047  Sum_probs=50.1

Q ss_pred             eEEEecCCC-chhHHHHHhhcCC--eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           87 VVLDLACGK-GGDLIKWDKAKIG--YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        87 ~iLDiGcG~-G~~~~~l~~~~~~--~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      +|.=||+|. |......+.....  +|+++|.++..++.+++.-.            .  .. ...+..+        ..
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~------------~--~~-~~~~~~~--------~~   59 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI------------I--DE-GTTSIAK--------VE   59 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS------------C--SE-EESCGGG--------GG
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCC------------c--cc-ccCCHHH--------Hh
Confidence            567788765 3322222222333  79999999988777653211            0  01 1122211        12


Q ss_pred             C-CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          164 A-PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       164 ~-~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      . ..|+|+..-       +......++..+...++++.+++.
T Consensus        60 ~~~aDvVilav-------p~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           60 DFSPDFVMLSS-------PVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             GTCCSEEEECS-------CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             cCCCCEEEEcC-------CHHHHHHHHHHHHhhCCCCcEEEE
Confidence            3 689988653       334556778888888998876654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=86.45  E-value=8.1  Score=29.62  Aligned_cols=87  Identities=13%  Similarity=0.035  Sum_probs=49.8

Q ss_pred             eEEEecCCC-chh-HHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           87 VVLDLACGK-GGD-LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        87 ~iLDiGcG~-G~~-~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      +|.=||||. |.. +..+. ....+++++|.++..++.+.+.-.            .  .. ...+..+        . .
T Consensus         2 ~i~iiG~G~~G~~~a~~l~-~~g~~V~~~~~~~~~~~~~~~~g~------------~--~~-~~~~~~~--------~-~   56 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLR-RRGHYLIGVSRQQSTCEKAVERQL------------V--DE-AGQDLSL--------L-Q   56 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHTTS------------C--SE-EESCGGG--------G-T
T ss_pred             EEEEEcCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHhCCC------------C--cc-ccCCHHH--------h-C
Confidence            466688765 222 22232 334489999999987776643211            0  01 1122211        2 4


Q ss_pred             CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ..|+|+..-       +......++..+...++++..++ ++
T Consensus        57 ~~D~vi~av-------~~~~~~~~~~~l~~~~~~~~~vv-~~   90 (279)
T 2f1k_A           57 TAKIIFLCT-------PIQLILPTLEKLIPHLSPTAIVT-DV   90 (279)
T ss_dssp             TCSEEEECS-------CHHHHHHHHHHHGGGSCTTCEEE-EC
T ss_pred             CCCEEEEEC-------CHHHHHHHHHHHHhhCCCCCEEE-EC
Confidence            679888653       33456778888888888877554 44

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=86.37  E-value=2.7  Score=34.98  Aligned_cols=46  Identities=22%  Similarity=0.221  Sum_probs=35.5

Q ss_pred             hhcCCCeEEEecCC--CchhHHHHHhhcCCeEEEEeCChhHHHHHHHh
Q 027388           81 YARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTR  126 (224)
Q Consensus        81 ~~~~~~~iLDiGcG--~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~  126 (224)
                      ...++.+||=.|++  .|..+..+++....++++++.++..++.+++.
T Consensus       217 ~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~l  264 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRAL  264 (447)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence            35678899999973  36677777766677899999999988888654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=86.28  E-value=0.61  Score=38.02  Aligned_cols=100  Identities=10%  Similarity=0.071  Sum_probs=53.1

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ++++|+=+|+|. |..+...+.....+|+++|.++..++.+.+.+.             ..+.....+...+.  .   .
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g-------------~~~~~~~~~~~~l~--~---~  226 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFG-------------GRVITLTATEANIK--K---S  226 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTT-------------TSEEEEECCHHHHH--H---H
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcC-------------ceEEEecCCHHHHH--H---H
Confidence            468899999853 333333443455689999999988777765432             11211111111111  0   0


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ...+|+|+..-....    ...+.-+.+...+.+++||+++..
T Consensus       227 ~~~~DvVi~~~g~~~----~~~~~li~~~~l~~mk~gg~iV~v  265 (369)
T 2eez_A          227 VQHADLLIGAVLVPG----AKAPKLVTRDMLSLMKEGAVIVDV  265 (369)
T ss_dssp             HHHCSEEEECCC-----------CCSCHHHHTTSCTTCEEEEC
T ss_pred             HhCCCEEEECCCCCc----cccchhHHHHHHHhhcCCCEEEEE
Confidence            136899886543211    001111245677788999987754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.99  E-value=4.2  Score=34.19  Aligned_cols=99  Identities=11%  Similarity=0.095  Sum_probs=60.6

Q ss_pred             CCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-cccc
Q 027388           85 GDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVL  160 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~  160 (224)
                      ..+|+=+|||  ..+..+++.   ....++.+|.++..++.+...+.               +..+++|...... ... 
T Consensus         3 ~M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~---------------~~~i~Gd~~~~~~L~~A-   64 (461)
T 4g65_A            3 AMKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKYD---------------LRVVNGHASHPDVLHEA-   64 (461)
T ss_dssp             CEEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSS---------------CEEEESCTTCHHHHHHH-
T ss_pred             cCEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcC---------------cEEEEEcCCCHHHHHhc-
Confidence            3466666665  455555542   44579999999999998877665               7889999876432 111 


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                       .-..+|++++.-       +.++..-+...+.+.+.+.-..+....+.
T Consensus        65 -gi~~ad~~ia~t-------~~De~Nl~~~~~Ak~~~~~~~~iar~~~~  105 (461)
T 4g65_A           65 -GAQDADMLVAVT-------NTDETNMAACQVAFTLFNTPNRIARIRSP  105 (461)
T ss_dssp             -TTTTCSEEEECC-------SCHHHHHHHHHHHHHHHCCSSEEEECCCH
T ss_pred             -CCCcCCEEEEEc-------CChHHHHHHHHHHHHhcCCccceeEeccc
Confidence             346889988642       12333444444555555544455544443

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=84.88  E-value=4.2  Score=32.51  Aligned_cols=93  Identities=8%  Similarity=-0.080  Sum_probs=52.9

Q ss_pred             CeEEEe-cCC-CchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc--ccccC
Q 027388           86 DVVLDL-ACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL--DKVLA  161 (224)
Q Consensus        86 ~~iLDi-GcG-~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~  161 (224)
                      .+||=. |+| .|..+.++++....++++++.++..++.+++.-.               ...+..+-.++..  .... 
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga---------------~~~~~~~~~~~~~~v~~~~-  229 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGA---------------AHVLNEKAPDFEATLREVM-  229 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTC---------------SEEEETTSTTHHHHHHHHH-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---------------CEEEECCcHHHHHHHHHHh-
Confidence            556543 333 3556666666556699999999999998876432               1122111111100  0000 


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ....+|+|+-.-.-       .    .+....+.|+++|.+++.
T Consensus       230 ~~~g~D~vid~~g~-------~----~~~~~~~~l~~~G~iv~~  262 (349)
T 3pi7_A          230 KAEQPRIFLDAVTG-------P----LASAIFNAMPKRARWIIY  262 (349)
T ss_dssp             HHHCCCEEEESSCH-------H----HHHHHHHHSCTTCEEEEC
T ss_pred             cCCCCcEEEECCCC-------h----hHHHHHhhhcCCCEEEEE
Confidence            11479999854321       2    236677899999998864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=84.69  E-value=0.39  Score=39.38  Aligned_cols=44  Identities=11%  Similarity=0.142  Sum_probs=30.9

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhc
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY  127 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~  127 (224)
                      ++++|+=+|+|. |..+...+.....+|+++|.++..++.+.+.+
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~  211 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF  211 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc
Confidence            578899999854 33333444344558999999998888776643

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=84.40  E-value=1.4  Score=35.26  Aligned_cols=110  Identities=11%  Similarity=-0.005  Sum_probs=62.5

Q ss_pred             CCCeEEEecCCC-ch-hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCC---------CeeEEecccc
Q 027388           84 RGDVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF---------PARLICGDCY  152 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~-~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---------~v~~~~~d~~  152 (224)
                      ...+|.=||+|+ |. ++..++ .....|+.+|+++..++.+.+++...-..-.+...+..         ++.+ ..|+.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a-~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~-~~~l~   82 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFA-SGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS-CTNLA   82 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE-ECCHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc-ccchH
Confidence            346788899986 32 233333 34558999999999888776655311000000000110         1111 11211


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      +        .....|+|+     +-+++..+-..++++++-++++|+.+|.-+|..
T Consensus        83 ~--------a~~~ad~Vi-----Eav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs  125 (319)
T 3ado_A           83 E--------AVEGVVHIQ-----ECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC  125 (319)
T ss_dssp             H--------HTTTEEEEE-----ECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS
T ss_pred             h--------HhccCcEEe-----eccccHHHHHHHHHHHHHHHhhhcceeehhhhh
Confidence            1        124677776     333445578899999999999999988876553

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=84.09  E-value=12  Score=28.33  Aligned_cols=108  Identities=13%  Similarity=0.093  Sum_probs=63.6

Q ss_pred             CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc-c
Q 027388           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-V  159 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~  159 (224)
                      .++++|=.|++.| ++..+++   ....+|+.++.++..++...+.+.             .++.++.+|+.+..... .
T Consensus         7 ~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~v~~~   72 (255)
T 4eso_A            7 QGKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEFG-------------PRVHALRSDIADLNEIAVL   72 (255)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-------------GGEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-------------CcceEEEccCCCHHHHHHH
Confidence            5678888887665 5554443   245689999999887776655432             24788899987643110 0


Q ss_pred             ----cCCCCCeeEEEEcccccccc----CCHHHHH-----------HHHHHHHhhccCCeEEEEE
Q 027388          160 ----LADDAPFDICSCQFAMHYSW----STEARAR-----------RALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ----~~~~~~~D~i~~~~~l~~~~----~~~~~~~-----------~~l~~~~~~lk~gG~li~~  205 (224)
                          ....+..|+++.+-.+...-    .+.++..           .+++.+...++++|.++..
T Consensus        73 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  137 (255)
T 4eso_A           73 GAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT  137 (255)
T ss_dssp             HHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence                00125799998765332110    0333332           2345566667778877754

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=83.92  E-value=0.46  Score=38.66  Aligned_cols=45  Identities=18%  Similarity=0.089  Sum_probs=31.2

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ++.+|+=+|+|. |..+..++.....+|+++|.++..++.+.+...
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~  211 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG  211 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC
Confidence            357899999854 334444444444589999999988888766543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=83.91  E-value=7.6  Score=25.99  Aligned_cols=108  Identities=11%  Similarity=-0.015  Sum_probs=55.0

Q ss_pred             CCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc-ccccc
Q 027388           85 GDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-LDKVL  160 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~  160 (224)
                      .++|+=+|+|  ..+..++.   ....+++++|.++..++.+++.                ...++.+|..+.. +... 
T Consensus         6 ~~~v~I~G~G--~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~----------------~~~~~~~d~~~~~~l~~~-   66 (144)
T 2hmt_A            6 NKQFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASY----------------ATHAVIANATEENELLSL-   66 (144)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTT----------------CSEEEECCTTCHHHHHTT-
T ss_pred             CCcEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------------CCEEEEeCCCCHHHHHhc-
Confidence            4578888874  44444432   3445799999987654433211                1345666654321 1000 


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                       ....+|+|+..-...      ......+....+.+.+. .++....+... .+.+++.|
T Consensus        67 -~~~~~d~vi~~~~~~------~~~~~~~~~~~~~~~~~-~ii~~~~~~~~-~~~l~~~g  117 (144)
T 2hmt_A           67 -GIRNFEYVIVAIGAN------IQASTLTTLLLKELDIP-NIWVKAQNYYH-HKVLEKIG  117 (144)
T ss_dssp             -TGGGCSEEEECCCSC------HHHHHHHHHHHHHTTCS-EEEEECCSHHH-HHHHHHHT
T ss_pred             -CCCCCCEEEECCCCc------hHHHHHHHHHHHHcCCC-eEEEEeCCHHH-HHHHHHcC
Confidence             135789988654211      12222334444455665 66655544432 34555555

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=83.34  E-value=2.9  Score=35.59  Aligned_cols=89  Identities=11%  Similarity=-0.068  Sum_probs=53.6

Q ss_pred             hcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...+++|+=+|+|. |......++....+|+++|.++...+.+.+.-                +.+  .++.+.      
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~G----------------a~~--~~l~e~------  326 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEG----------------FDV--VTVEEA------  326 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT----------------CEE--CCHHHH------
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC----------------CEE--ecHHHH------
Confidence            35788999999865 44444444445568999999998777665431                111  122111      


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ...+|+|+..-.-.+++         -....+.+++||+++..
T Consensus       327 --l~~aDvVi~atgt~~~i---------~~~~l~~mk~ggilvnv  360 (494)
T 3ce6_A          327 --IGDADIVVTATGNKDII---------MLEHIKAMKDHAILGNI  360 (494)
T ss_dssp             --GGGCSEEEECSSSSCSB---------CHHHHHHSCTTCEEEEC
T ss_pred             --HhCCCEEEECCCCHHHH---------HHHHHHhcCCCcEEEEe
Confidence              14689998753222210         12456778999988754

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=82.79  E-value=13  Score=28.41  Aligned_cols=111  Identities=15%  Similarity=0.083  Sum_probs=62.9

Q ss_pred             CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCC------------hhHHHHHHHhccCCcccccccccCCCCeeEEe
Q 027388           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIA------------EGSIEDCRTRYNGDADHHQRRKKFSFPARLIC  148 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s------------~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~  148 (224)
                      .++++|=.|++.| ++..+++   ....+|+.+|.+            ...++.+...+.          ....++.++.
T Consensus         9 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~   77 (287)
T 3pxx_A            9 QDKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVE----------KTGRKAYTAE   77 (287)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHH----------HTTSCEEEEE
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHH----------hcCCceEEEE
Confidence            5678888887765 5554443   345689999987            555555444433          1234588899


Q ss_pred             ccccccccc-ccc----CCCCCeeEEEEccccccc--cCCHHHHH-----------HHHHHHHhhccCCeEEEEE
Q 027388          149 GDCYEVHLD-KVL----ADDAPFDICSCQFAMHYS--WSTEARAR-----------RALANVSALLRPGGTFIGT  205 (224)
Q Consensus       149 ~d~~~~~~~-~~~----~~~~~~D~i~~~~~l~~~--~~~~~~~~-----------~~l~~~~~~lk~gG~li~~  205 (224)
                      +|+.+...- ...    ..-+..|+++.+-.+...  ..+.++..           .+++.+...++.+|.++..
T Consensus        78 ~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           78 VDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence            998764311 000    011478999876543221  01223332           2445566677778877754

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=82.29  E-value=12  Score=29.52  Aligned_cols=106  Identities=10%  Similarity=-0.016  Sum_probs=64.6

Q ss_pred             CCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-cccc
Q 027388           85 GDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVL  160 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~  160 (224)
                      ...++=+|+  |..+..+++.   ... ++.+|.+++.++ ++..                .+.++.+|..+... ... 
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~----------------~~~~i~gd~~~~~~L~~a-  173 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLRS----------------GANFVHGDPTRVSDLEKA-  173 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHT----------------TCEEEESCTTSHHHHHHT-
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhC----------------CcEEEEeCCCCHHHHHhc-
Confidence            456777776  5666666542   334 889999998888 5431                26789999875432 111 


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                       ....+|.+++..       +.+...-......+.+.|...++....+... .+.+++.|
T Consensus       174 -~i~~a~~vi~~~-------~~d~~n~~~~~~ar~~~~~~~iiar~~~~~~-~~~l~~~G  224 (336)
T 1lnq_A          174 -NVRGARAVIVDL-------ESDSETIHCILGIRKIDESVRIIAEAERYEN-IEQLRMAG  224 (336)
T ss_dssp             -CSTTEEEEEECC-------SSHHHHHHHHHHHHTTCTTSEEEEECSSGGG-HHHHHHTT
T ss_pred             -ChhhccEEEEcC-------CccHHHHHHHHHHHHHCCCCeEEEEECCHHH-HHHHHHcC
Confidence             346889888753       1233444455566677787777776655443 24444444

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=81.82  E-value=0.55  Score=38.55  Aligned_cols=42  Identities=21%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHH
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRT  125 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~  125 (224)
                      ++.+|+=+|+|. |..+..++.....+|+++|.++..++.+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~  225 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS  225 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            568999999986 444445554455689999999988888865

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=81.81  E-value=15  Score=27.80  Aligned_cols=112  Identities=5%  Similarity=-0.065  Sum_probs=63.2

Q ss_pred             CCCeEEEecCC--CchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc-
Q 027388           84 RGDVVLDLACG--KGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-  157 (224)
Q Consensus        84 ~~~~iLDiGcG--~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-  157 (224)
                      .++++|=.|++  .| ++..+++   ....+|+.++.+....+.+.+.....         ...++.++.+|+.+...- 
T Consensus         6 ~~k~vlVTGasg~~G-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---------~~~~~~~~~~D~~~~~~v~   75 (266)
T 3oig_A            6 EGRNIVVMGVANKRS-IAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTL---------DRNDSIILPCDVTNDAEIE   75 (266)
T ss_dssp             TTCEEEEECCCSTTS-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTS---------SSCCCEEEECCCSSSHHHH
T ss_pred             CCCEEEEEcCCCCCc-HHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhc---------CCCCceEEeCCCCCHHHHH
Confidence            46788888876  33 4433332   34568999998876666555544311         122588899998764311 


Q ss_pred             ccc----CCCCCeeEEEEcccccc-------c-cCCHHHHH-----------HHHHHHHhhccCCeEEEEE
Q 027388          158 KVL----ADDAPFDICSCQFAMHY-------S-WSTEARAR-----------RALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~----~~~~~~D~i~~~~~l~~-------~-~~~~~~~~-----------~~l~~~~~~lk~gG~li~~  205 (224)
                      ...    ...+.+|+++.+-.+..       + ..+.++..           .+++.+...++++|.++..
T Consensus        76 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i  146 (266)
T 3oig_A           76 TCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL  146 (266)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             HHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence            000    01247899887654321       0 01333332           2455667777788877764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=81.11  E-value=16  Score=28.23  Aligned_cols=111  Identities=15%  Similarity=0.088  Sum_probs=62.3

Q ss_pred             CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhH-HHHHHHhccCCcccccccccCCCCeeEEeccccccccc-c
Q 027388           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGS-IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K  158 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~-~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~  158 (224)
                      .++++|=.|++.| ++..+++   ....+|+.++.+... .+...+...          ....++.++.+|+.+.... .
T Consensus        46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~~Dv~d~~~v~~  114 (291)
T 3ijr_A           46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVE----------KEGVKCVLLPGDLSDEQHCKD  114 (291)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH----------TTTCCEEEEESCTTSHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHH----------hcCCcEEEEECCCCCHHHHHH
Confidence            5678888887765 5554443   245689999987653 333333332          2244588899998764310 0


Q ss_pred             ----ccCCCCCeeEEEEcccccccc-----CCHHHH-----------HHHHHHHHhhccCCeEEEEE
Q 027388          159 ----VLADDAPFDICSCQFAMHYSW-----STEARA-----------RRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ----~~~~~~~~D~i~~~~~l~~~~-----~~~~~~-----------~~~l~~~~~~lk~gG~li~~  205 (224)
                          .....+..|+++.+-......     .+.++.           ..+++.+...++.+|.++..
T Consensus       115 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          115 IVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             HHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             HHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence                000124789999764322110     023333           23455666777788877764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=80.47  E-value=0.81  Score=37.52  Aligned_cols=42  Identities=19%  Similarity=0.146  Sum_probs=30.5

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHH
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRT  125 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~  125 (224)
                      ++.+|+=+|+|. |..+..++.....+|+.+|.++...+.++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            578999999875 444444544455689999999887777755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	3e-31
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	6e-12
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	2e-11
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	3e-10
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	2e-09
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	6e-09
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-08
d2bzga1	229	c.66.1.36 (A:17-245) Thiopurine S-methyltransferas	2e-06
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	2e-06
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-06
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	4e-06
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	6e-06
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	3e-05
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	4e-05
d1af7a2	193	c.66.1.8 (A:92-284) Chemotaxis receptor methyltran	5e-05
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	6e-05
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	7e-05
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	2e-04
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	3e-04
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	5e-04
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	5e-04
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	5e-04
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	8e-04
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	9e-04
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	0.001
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	0.001
d1m6ya2	192	c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf	0.001
d1im8a_	225	c.66.1.14 (A:) Hypothetical protein HI0319 (YecO)	0.003
d2avna1	246	c.66.1.41 (A:1-246) Hypothetical methyltransferase	0.003

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score =  112 bits (281), Expect = 3e-31
 Identities = 66/164 (40%), Positives = 94/164 (57%), Gaps = 12/164 (7%)

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           S  I+++  NN+IK+ L++LY +RGD VLDL CGKGGDL+K+++A IG Y G+DIAE SI
Sbjct: 1   SKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI 60

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
            D R R            K  F       D Y  H+D        FD+ S QF+ HY++S
Sbjct: 61  NDARVRARN--------MKRRFKVFFRAQDSYGRHMD----LGKEFDVISSQFSFHYAFS 108

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHFCHS 224
           T      A  N++  LRPGG FI T+P  +VI+++ ++    + 
Sbjct: 109 TSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSND 152

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 6e-12
 Identities = 33/199 (16%), Positives = 56/199 (28%), Gaps = 26/199 (13%)

Query: 45  DHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK 104
             Y         E E     +L+ L+             +GD ++D+  G     +    
Sbjct: 18  ATYYSFDGSPSPEAEMLKF-NLECLHKTFGPGG-----LQGDTLIDIGSGPTIYQVLAAC 71

Query: 105 AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC------------- 151
                    D  + + E+       +   +       F   L                  
Sbjct: 72  DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV 131

Query: 152 -----YEVHLDKVLA--DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204
                 +VHL   LA       D      AM  +  +    R AL N+++LL+PGG  + 
Sbjct: 132 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT 191

Query: 205 TMPDANVIIKKLREEHFCH 223
           T+          + E  C 
Sbjct: 192 TVTLRLPSYMVGKREFSCV 210

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.0 bits (144), Expect = 2e-11
 Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 14/188 (7%)

Query: 32  EDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDL 91
              S  V A  + D Y+      + +          +   +   +L  L       VLD+
Sbjct: 6   RTRSLGVAAEGIPDQYADGEAARVWQLYIGD--TRSRTAEYKAWLLGLLRQHGCHRVLDV 63

Query: 92  ACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150
           ACG G D I     + G+ V  +D ++  ++              RRK+ +F   +I   
Sbjct: 64  ACGTGVDSIML--VEEGFSVTSVDASDKMLKYALKER------WNRRKEPAFDKWVIEEA 115

Query: 151 CYEVHLDKVLADDAPFDICSCQFAMHY---SWSTEARARRALANVSALLRPGGTFIGTMP 207
            +      V A D    +     +  +   S   ++  R AL N+++++RPGG  +    
Sbjct: 116 NWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175

Query: 208 DANVIIKK 215
           + + I+  
Sbjct: 176 NYDYILST 183

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 55.5 bits (132), Expect = 3e-10
 Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 10/142 (7%)

Query: 65  HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCR 124
           H  ++N  ++     L    G  VL   CGK  D+  W   +  + VG +++E ++E   
Sbjct: 1   HQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMS-WLSGQGYHVVGAELSEAAVERYF 59

Query: 125 TRYNGDADHHQRRKKFSFP---ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST 181
           T          +     +      + CGD + +    +    A +D  +           
Sbjct: 60  TERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMR-- 117

Query: 182 EARARRALANVSALLRPGGTFI 203
                R + ++ AL+    + +
Sbjct: 118 ----ERYVQHLEALMPQACSGL 135

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 26/184 (14%), Positives = 49/184 (26%), Gaps = 27/184 (14%)

Query: 68  KLNNWIKSVLVQLYA---RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCR 124
            +  W    L Q +A     G  ++D+  G     +    +        D  E + ++  
Sbjct: 35  GVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELG 94

Query: 125 TRYNGDADHHQRRKKFSFPARL----------------------ICGDCYEVHLDKVLAD 162
                +               +                               L      
Sbjct: 95  RWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPA 154

Query: 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI--GTMPDANVIIKKLREEH 220
             P D     F +       A  +RAL +++ LLRPGG  +  G + ++  +  + R   
Sbjct: 155 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTV 214

Query: 221 FCHS 224
              S
Sbjct: 215 VPVS 218

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 6e-09
 Identities = 16/167 (9%), Positives = 43/167 (25%), Gaps = 21/167 (12%)

Query: 69  LNNWIKSVLVQLYARRGDV-----VLDLACGKGGDLIKWDKAKI-------GYYVGIDIA 116
           +  ++   L  +  R GD      +L +  G G   ++                  ++ +
Sbjct: 20  MQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPS 79

Query: 117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH 176
              I   +      ++    +  +                     +   +D       ++
Sbjct: 80  AEQIAKYKELVAKISNLENVKFAWHK-----ETSSEYQSRMLEKKELQKWDFIHMIQMLY 134

Query: 177 YSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHFCH 223
           Y     A     L    +LL      +  +   +    KL +++   
Sbjct: 135 YVKDIPA----TLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSR 177

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (122), Expect = 2e-08
 Identities = 26/193 (13%), Positives = 67/193 (34%), Gaps = 13/193 (6%)

Query: 13  EGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA-SPIIHLKKLNN 71
                   +   +    F+ D    V+ R +    ++     L+  +A S  ++ + L N
Sbjct: 149 RQRIIDHLETIDKIPRSFIHDFLHIVYTRSIHPQANK-----LKHYKAFSNYVYGELLPN 203

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKW-DKAKIGYYVGIDIAEGSIEDCRTRYNGD 130
           ++  V  Q   ++GD  +DL  G G  +++   +       G +I + + +    +Y   
Sbjct: 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE-- 261

Query: 131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190
               + +K+       +    + +    V  +     I  C   +  ++  +    + + 
Sbjct: 262 ----ELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVE 317

Query: 191 NVSALLRPGGTFI 203
            +    + G   I
Sbjct: 318 KILQTAKVGCKII 330

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 6/146 (4%)

Query: 65  HLKKLNNWIKSVLVQLYA-RRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIED 122
           H ++ +  +K  L      + G  V    CGK  ++  +  A  G+ V G++I+E  I++
Sbjct: 25  HQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWF--ADRGHSVVGVEISELGIQE 82

Query: 123 CRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW--S 180
             T  N         +               ++   +                  +    
Sbjct: 83  FFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAI 142

Query: 181 TEARARRALANVSALLRPGGTFIGTM 206
                +     + +LL     ++  +
Sbjct: 143 NPGDRKCYADTMFSLLGKKFQYLLCV 168

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 26/166 (15%)

Query: 42  KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
            +A++Y     + +E  +A          ++++ +  +   R    VLDLACG G   ++
Sbjct: 7   LLAEYYDTIYRRRIERVKAE--------IDFVEEIFKEDAKREVRRVLDLACGTGIPTLE 58

Query: 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161
             + +    VG+D+ E  +   R +        +  +                       
Sbjct: 59  LAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN------------- 104

Query: 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207
               FD  +  F+    +  E   R+  + V+  L+PGG FI   P
Sbjct: 105 ---EFDAVTMFFSTIM-YFDEEDLRKLFSKVAEALKPGGVFITDFP 146

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 25/184 (13%), Positives = 55/184 (29%), Gaps = 24/184 (13%)

Query: 30  FLEDESTKVFARKVAD-----HYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARR 84
            L     +V+   V D     +Y   + +   E             + +  ++ ++    
Sbjct: 102 LLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGE----------TSFDLVAQMIDEIKMTD 151

Query: 85  GDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143
            D+ +DL  G G  +++   A    +  G++ A+   +   T         +   K    
Sbjct: 152 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 211

Query: 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
             L  GD       + +A+     +                    L    A ++ GG  +
Sbjct: 212 YTLERGDFLSEEWRERIAN---TSVIFVNNFAFGP-----EVDHQLKERFANMKEGGRIV 263

Query: 204 GTMP 207
            + P
Sbjct: 264 SSKP 267

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 44.2 bits (103), Expect = 4e-06
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 31/147 (21%)

Query: 65  HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW-DKAKIGYYVGIDIAEGSIEDC 123
           H + L + I + L +    +   VLD+ CG+G     + D        G+D+++ +I+  
Sbjct: 65  HYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA 124

Query: 124 RTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA 183
             RY           +  F                    D   D     +A         
Sbjct: 125 AKRYPQVTFCVASSHRLPFS-------------------DTSMDAIIRIYAPC------- 158

Query: 184 RARRALANVSALLRPGGTFIGTMPDAN 210
                   ++ +++PGG  I   P   
Sbjct: 159 ----KAEELARVVKPGGWVITATPGPR 181

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 20/129 (15%), Positives = 35/129 (27%), Gaps = 14/129 (10%)

Query: 76  VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQ 135
            L    + +G  VL++  G      K  +A I  +  I+  +G  +              
Sbjct: 45  ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRL------------ 92

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFD-ICSCQFAMHYSWSTEARARRALANVSA 194
            R         +               D  FD I    + +        +      +   
Sbjct: 93  -RDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFR 151

Query: 195 LLRPGGTFI 203
           LL+PGG   
Sbjct: 152 LLKPGGVLT 160

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 76  VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQ 135
           ++      + DV +D+ CG GG +      ++     ID    +I             + 
Sbjct: 25  IMCLAEPGKNDVAVDVGCGTGG-VTLELAGRVRRVYAIDRNPEAISTTE--------MNL 75

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
           +R        L+ GD  E      L      DI     +           +         
Sbjct: 76  QRHGLGDNVTLMEGDAPE-----ALCKIPDIDIAVVGGSGGELQEILRIIKD-------K 123

Query: 196 LRPGGTFI---GTMPDANVIIKKLREEHF 221
           L+PGG  I     +      ++ LR+  F
Sbjct: 124 LKPGGRIIVTAILLETKFEAMECLRDLGF 152

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 23/143 (16%), Positives = 42/143 (29%), Gaps = 16/143 (11%)

Query: 76  VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYN--GDA 131
           +L  +    GD VL+   G GG  +   KA    G  +  ++ +   +  +  Y    D+
Sbjct: 90  ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
                 +++      I  D      D        FD                     L  
Sbjct: 150 WKLSHVEEWPDNVDFIHKDISGATED---IKSLTFDAV---------ALDMLNPHVTLPV 197

Query: 192 VSALLRPGGTFIGTMPDANVIIK 214
               L+ GG     + +   +I+
Sbjct: 198 FYPHLKHGGVCAVYVVNITQVIE 220

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 193

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 3/109 (2%)

Query: 98  DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157
           D    +KA+ G Y   ++   S +  +  +      H+   +                L+
Sbjct: 65  DTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLE 124

Query: 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT-FIGT 205
           K      PFD   C+  M Y    +      L     LL+P G  F G 
Sbjct: 125 KQYNVPGPFDAIFCRNVMIY--FDKTTQEDILRRFVPLLKPDGLLFAGH 171

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 40.4 bits (93), Expect = 6e-05
 Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 20/128 (15%)

Query: 77  LVQLYA-RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQ 135
           L+Q+ A +  + VLD+A G GG +       +   V  D+ E  ++  R    G+     
Sbjct: 7   LMQIAALKGNEEVLDVATG-GGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQV 65

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
              +          + +                         +          ++    +
Sbjct: 66  EYVQGDAEQMPFTDERF------------------HIVTCRIAAHHFPNPASFVSEAYRV 107

Query: 196 LRPGGTFI 203
           L+ GG  +
Sbjct: 108 LKKGGQLL 115

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 17/145 (11%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR 136
                    D  LDLACG  G+L +    K      +D+++  + +   ++       + 
Sbjct: 30  KCVENNLVFDDYLDLACG-TGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRL 88

Query: 137 RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL 196
                      C D   ++       +  FD+ +C              ++    VS  L
Sbjct: 89  ----------ACQDISNLN------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHL 132

Query: 197 RPGGTFIGTMPDANVIIKKLREEHF 221
           + GG FI  +     + + L    F
Sbjct: 133 KEGGVFIFDINSYYKLSQVLGNNDF 157

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 23/177 (12%)

Query: 45  DHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK 104
             Y R      +         ++ L   +       Y ++   VLDLACG GG       
Sbjct: 3   KEYYRVFPTYTDINSQEYRSRIETLEPLLMK-----YMKKRGKVLDLACGVGGFSFLL-- 55

Query: 105 AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164
                                     ++   R+ +    +R    +       K+  +D 
Sbjct: 56  --------------EDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDK 101

Query: 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHF 221
            FD      ++ +    E    +    V  +L+P G FI    D   ++ +L+E   
Sbjct: 102 TFDYVIFIDSIVHFEPLELN--QVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLV 156

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 19/134 (14%)

Query: 70  NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129
           ++ +  ++     R    VLD+  G G   + +    +   +G+D  +            
Sbjct: 2   HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSP-YVQECIGVDATK------------ 48

Query: 130 DADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRAL 189
             +  +    F+    +      +   + +   D  FDI +C++A H+           +
Sbjct: 49  --EMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKA----V 102

Query: 190 ANVSALLRPGGTFI 203
             V+ +L+  G F+
Sbjct: 103 REVARVLKQDGRFL 116

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 27/187 (14%), Positives = 46/187 (24%), Gaps = 34/187 (18%)

Query: 48  SRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-- 105
                +  E R  +P  +  KL   I + L     + G  VL L    G           
Sbjct: 39  RVIKWEGEEYRIWNP--NRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVG 96

Query: 106 KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165
             G   GI+ +   + +         +              I GD  +    + L     
Sbjct: 97  WEGKIFGIEFSPRVLRELVPIVEERRNIV-----------PILGDATKPEEYRALVPKVD 145

Query: 166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI---------GTMPDANVI--IK 214
                                  + N    L+ GG  +          T     V   ++
Sbjct: 146 VIFEDVAQPTQAKI--------LIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVE 197

Query: 215 KLREEHF 221
           +   E+F
Sbjct: 198 RELSEYF 204

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 31/143 (21%), Positives = 43/143 (30%), Gaps = 18/143 (12%)

Query: 84  RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143
           +  VVLD+ CG G   +   KA     +G+D +E   +         A    R  K    
Sbjct: 35  KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ---------AMDIIRLNKLEDT 85

Query: 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
             LI G   EVHL                  M Y    E+     L   +  L  GG+  
Sbjct: 86  ITLIKGKIEEVHLPV------EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139

Query: 204 ---GTMPDANVIIKKLREEHFCH 223
               T+    V       +    
Sbjct: 140 PDICTISLVAVSDVNKHADRIAF 162

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 22/127 (17%)

Query: 84  RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS 141
           +   ++D  CG G   +       +   Y GID  E  + + R  +       +  +  +
Sbjct: 27  KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA 86

Query: 142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT 201
               L       +                C   + +  + E      L  +   ++ GG 
Sbjct: 87  TEIELNDKYDIAI----------------CHAFLLHMTTPE----TMLQKMIHSVKKGGK 126

Query: 202 FIGTMPD 208
            I   P 
Sbjct: 127 IICFEPH 133

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 8e-04
 Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 15/132 (11%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
           +  S+    +  +  VVLD+  G G   +   KA     +GI+ +  S            
Sbjct: 21  YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAV-------- 72

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
               +  K      +I G   E      +              M Y    E+     L  
Sbjct: 73  -KIVKANKLDHVVTIIKGKVEE------VELPVEKVDIIISEWMGYCLFYESMLNTVLHA 125

Query: 192 VSALLRPGGTFI 203
               L P G   
Sbjct: 126 RDKWLAPDGLIF 137

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 36.9 bits (84), Expect = 9e-04
 Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 18/116 (15%)

Query: 88  VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147
            LDL CG G + +                  +                   +    A  +
Sbjct: 34  TLDLGCGNGRNSLYL----------------AANGYDVTAWDKNPASMANLERIKAAEGL 77

Query: 148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
                ++     L  D  +D       M   +         +AN+    +PGG  +
Sbjct: 78  DNLQTDLVDLNTLTFDGEYDFILSTVVMM--FLEAQTIPGLIANMQRCTKPGGYNL 131

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 23/138 (16%), Positives = 41/138 (29%), Gaps = 18/138 (13%)

Query: 73  IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDAD 132
             ++   L  + G  +LDL  G G  L  W +       GID++       + R   +  
Sbjct: 22  YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAE-ELG 80

Query: 133 HHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192
             +R       A     +                D+ +C  A   +             +
Sbjct: 81  VSERVHFIHNDAAGYVANE-------------KCDVAACVGATWIAGGFAGAEEL----L 123

Query: 193 SALLRPGGTFIGTMPDAN 210
           +  L+PGG  +   P   
Sbjct: 124 AQSLKPGGIMLIGEPYWR 141

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 13/153 (8%), Positives = 41/153 (26%), Gaps = 28/153 (18%)

Query: 76  VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADH 133
           ++++   R G  +L++  G G        A    G    ++  E +++            
Sbjct: 77  IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAM--------- 127

Query: 134 HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193
                     +              +    +     +    +   W         +  ++
Sbjct: 128 -------DNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPDPW-------NHVQKIA 173

Query: 194 ALLRPGGT---FIGTMPDANVIIKKLREEHFCH 223
           ++++PG     ++     +   +  L      H
Sbjct: 174 SMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH 206

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 30/165 (18%), Positives = 52/165 (31%), Gaps = 19/165 (11%)

Query: 67  KKLNNWIKSVLVQ-----LYARRGDVVLDLACGKGGD----LIKWDKAKIGYYVGIDIAE 117
           +K +     V+V+     L      ++LD   G+GG     L      +I   +GID+  
Sbjct: 1   RKYSQRHIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRI---IGIDVDS 57

Query: 118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY 177
             +     +    +D     K     A  +        +D +L D     + + Q     
Sbjct: 58  EVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD---LGVSTYQLKGEN 114

Query: 178 SWSTEARARRALANVSALLRPGGTF--IGTMPDANVIIKKLREEH 220
                   +  L     LL PGG    I      + I+K+     
Sbjct: 115 RELEN--LKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRNS 157

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 3/107 (2%)

Query: 75  SVLVQLYARRGDVVLDLACGKGGDLIKWD---KAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
            +L + +      V DL C +G   +             +GID ++  +E CR       
Sbjct: 30  GMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH 89

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS 178
                    +    +   +   V L+  L    P D  +    ++  
Sbjct: 90  SEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEG 136

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 17/145 (11%), Positives = 41/145 (28%), Gaps = 24/145 (16%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR 136
            ++ Y +    VLDL  G G   +   +                               +
Sbjct: 35  FLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVV--------------------LVDPSK 74

Query: 137 RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL 196
                   + +         D      A   + +    + Y  + +    +A + +  +L
Sbjct: 75  EMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKD----KAFSEIRRVL 130

Query: 197 RPGGTFIGTMPDANVIIKKLREEHF 221
            P G  I T+ +    ++++ E+  
Sbjct: 131 VPDGLLIATVDNFYTFLQQMIEKDA 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.93
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.9
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.89
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.89
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.89
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.88
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.88
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.87
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.87
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.87
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.86
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.86
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.85
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.83
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.82
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.82
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.81
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.8
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.79
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.79
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.78
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.77
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.77
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.77
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.77
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.75
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.74
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.73
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.72
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.72
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.7
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.7
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.68
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.67
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.67
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.65
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.64
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.64
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.63
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.63
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.62
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.59
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.59
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.57
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.56
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.55
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.54
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.52
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.5
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.49
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.46
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.44
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.43
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.42
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.38
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.36
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.35
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.34
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.33
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.32
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.31
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.31
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.3
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.21
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.21
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.21
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.18
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.18
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.15
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.14
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.02
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.01
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.99
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.99
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.92
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.91
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.9
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.88
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.87
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.86
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.83
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.82
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.79
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.79
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.78
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.78
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.77
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.73
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.59
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.53
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.53
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.5
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.49
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.49
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.48
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.41
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.32
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.3
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.16
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.01
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.68
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.41
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.26
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.22
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	97.17
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.13
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.09
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.04
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.03
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.02
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.0
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.96
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.92
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.85
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.73
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	96.7
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.69
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.67
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.61
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.56
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.56
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.31
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.28
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.07
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.06
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	96.02
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.75
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.65
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.63
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.62
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.48
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.44
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.24
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.77
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.72
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.7
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.85
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.85
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.55
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.65
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	92.23
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.0
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.21
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	91.12
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	90.96
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.72
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.65
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	89.32
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	89.26
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	88.7
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	88.12
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.51
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	86.54
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	85.6
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	84.19
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	82.02
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	81.51
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	81.33
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	80.14

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.93  E-value=2.3e-25  Score=174.07  Aligned_cols=145  Identities=45%  Similarity=0.781  Sum_probs=125.5

Q ss_pred             ceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCC
Q 027388           63 IIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF  142 (224)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  142 (224)
                      +..++.++.|+++.+......++++|||||||+|..+..++..+.+.|+|||+|+.|++.|+++...        .....
T Consensus         3 ~~~~r~~~N~vK~~lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~--------~~~~~   74 (252)
T d1ri5a_           3 TINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARN--------MKRRF   74 (252)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHT--------SCCSS
T ss_pred             ccHHHHHHHHHHHHHHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHh--------cCCCc
Confidence            4467899999999988888889999999999999999999877777899999999999999988762        23345


Q ss_pred             CeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhc
Q 027388          143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREE  219 (224)
Q Consensus       143 ~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~  219 (224)
                      ++.+.++|+...+..    ..++||+|+|.+++||++.+.++...+++++.++|+|||+|++++++.+.+...+.+.
T Consensus        75 ~v~f~~~D~~~~~~~----~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~  147 (252)
T d1ri5a_          75 KVFFRAQDSYGRHMD----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQG  147 (252)
T ss_dssp             EEEEEESCTTTSCCC----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHT
T ss_pred             ceEEEEcchhhhccc----ccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhc
Confidence            689999998765542    3578999999999999988888999999999999999999999999999888877654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=6.5e-23  Score=158.79  Aligned_cols=146  Identities=18%  Similarity=0.236  Sum_probs=112.0

Q ss_pred             hhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEe
Q 027388           35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGID  114 (224)
Q Consensus        35 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD  114 (224)
                      .+.++|++.+..|+.......          ......++..++.. ...++.+|||+|||+|.++..+++. +.+++|+|
T Consensus         4 ~~~~~yd~~a~~Yd~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD   71 (246)
T d2avna1           4 RSWEFYDRIARAYDSMYETPK----------WKLYHRLIGSFLEE-YLKNPCRVLDLGGGTGKWSLFLQER-GFEVVLVD   71 (246)
T ss_dssp             CHHHHHHHHHHHHGGGGCSHH----------HHHHHHHHHHHHHH-HCCSCCEEEEETCTTCHHHHHHHTT-TCEEEEEE
T ss_pred             cHHHHHHHHHHHHHHHhcccc----------chHHHHHHHHHHHH-hcCCCCEEEEECCCCchhccccccc-ceEEEEee
Confidence            356799999999975432221          12233344443333 3457789999999999999999755 45899999


Q ss_pred             CChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEc-cccccccCCHHHHHHHHHHHH
Q 027388          115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQ-FAMHYSWSTEARARRALANVS  193 (224)
Q Consensus       115 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~-~~l~~~~~~~~~~~~~l~~~~  193 (224)
                      +|+.|++.|+++..               ..++.+|+.+++.     ++++||+|+|. .+++|+    +++..+++++.
T Consensus        72 ~s~~~l~~a~~~~~---------------~~~~~~~~~~l~~-----~~~~fD~ii~~~~~~~~~----~d~~~~l~~i~  127 (246)
T d2avna1          72 PSKEMLEVAREKGV---------------KNVVEAKAEDLPF-----PSGAFEAVLALGDVLSYV----ENKDKAFSEIR  127 (246)
T ss_dssp             SCHHHHHHHHHHTC---------------SCEEECCTTSCCS-----CTTCEEEEEECSSHHHHC----SCHHHHHHHHH
T ss_pred             cccccccccccccc---------------ccccccccccccc-----ccccccceeeecchhhhh----hhHHHHHHHHH
Confidence            99999999998855               3467889888876     57899999985 578887    56788999999


Q ss_pred             hhccCCeEEEEEeCChHHHHHHh
Q 027388          194 ALLRPGGTFIGTMPDANVIIKKL  216 (224)
Q Consensus       194 ~~lk~gG~li~~~~~~~~~~~~~  216 (224)
                      ++|||||++++++++...+....
T Consensus       128 r~Lk~gG~~ii~~~~~~~~~~~~  150 (246)
T d2avna1         128 RVLVPDGLLIATVDNFYTFLQQM  150 (246)
T ss_dssp             HHEEEEEEEEEEEEBHHHHHHHH
T ss_pred             hhcCcCcEEEEEECCHHHHHHHH
Confidence            99999999999999876655443

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.1e-23  Score=156.79  Aligned_cols=125  Identities=15%  Similarity=0.173  Sum_probs=104.8

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||||||+|.++..++...+.+|+|||+|+.|++.|++++...+         ..+++|+++|+.+++.     
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~---------~~~~~f~~~d~~~~~~-----  123 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG---------KRVRNYFCCGLQDFTP-----  123 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG---------GGEEEEEECCGGGCCC-----
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccc---------cccccccccccccccc-----
Confidence            35668999999999999998876677789999999999999999976321         2347899999998876     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC-----------------ChHHHHHHhhhcccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP-----------------DANVIIKKLREEHFC  222 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~-----------------~~~~~~~~~~~~gf~  222 (224)
                      +.+.||+|++..+++|+  +.++...+++++.++|+|||.+++..+                 ....+.+.+.++||.
T Consensus       124 ~~~~fD~I~~~~~l~h~--~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~  199 (222)
T d2ex4a1         124 EPDSYDVIWIQWVIGHL--TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLS  199 (222)
T ss_dssp             CSSCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccc--hhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCE
Confidence            57899999999999998  666778999999999999999998621                 356788888888984

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.89  E-value=1.2e-22  Score=156.22  Aligned_cols=113  Identities=19%  Similarity=0.325  Sum_probs=96.7

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      .++++...++++.+|||||||+|.++..+++. ..+++|+|+|+.|++.|++++...        + ..++.++++|+.+
T Consensus         5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~--------~-~~~i~~~~~d~~~   74 (231)
T d1vl5a_           5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGN--------G-HQQVEYVQGDAEQ   74 (231)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHT--------T-CCSEEEEECCC-C
T ss_pred             HHHHHhcCCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccc--------c-ccccccccccccc
Confidence            44666677888999999999999999988754 468999999999999999887622        2 3458999999998


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +++     +.++||+|+|..+++|+    +++..+++++.++|||||+|++.
T Consensus        75 l~~-----~~~~fD~v~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          75 MPF-----TDERFHIVTCRIAAHHF----PNPASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             CCS-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccc-----ccccccccccccccccc----CCHHHHHHHHHHhcCCCcEEEEE
Confidence            886     57899999999999998    67889999999999999999985

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=8.1e-23  Score=159.01  Aligned_cols=146  Identities=24%  Similarity=0.396  Sum_probs=110.2

Q ss_pred             HHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCCh
Q 027388           38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE  117 (224)
Q Consensus        38 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~  117 (224)
                      ++|+.+++.|+........        .......++..++......++++|||||||+|.++..+++.+ .+++|||+|+
T Consensus         3 ~~~~~~a~~Yd~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~-~~v~gvD~s~   73 (251)
T d1wzna1           3 ELYTLLAEYYDTIYRRRIE--------RVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHE   73 (251)
T ss_dssp             GGGTTTGGGHHHHTHHHHH--------THHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCH
T ss_pred             chhHhhHHHHHHHHHhhhh--------hHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccc-eEEEEEeecc
Confidence            4666677777643222111        112234455556665566677899999999999999988655 4899999999


Q ss_pred             hHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcc-ccccccCCHHHHHHHHHHHHhhc
Q 027388          118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSALL  196 (224)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~-~l~~~~~~~~~~~~~l~~~~~~l  196 (224)
                      .|++.|++++..          ...+++++++|+++++.      .+.||+|+|.+ +++|+  +.+++..+|+++.++|
T Consensus        74 ~mi~~a~~~~~~----------~~~~i~~~~~d~~~l~~------~~~fD~I~~~~~~~~~~--~~~~~~~~L~~~~~~L  135 (251)
T d1wzna1          74 EMLRVARRKAKE----------RNLKIEFLQGDVLEIAF------KNEFDAVTMFFSTIMYF--DEEDLRKLFSKVAEAL  135 (251)
T ss_dssp             HHHHHHHHHHHH----------TTCCCEEEESCGGGCCC------CSCEEEEEECSSGGGGS--CHHHHHHHHHHHHHHE
T ss_pred             cccccccccccc----------ccccchheehhhhhccc------ccccchHhhhhhhhhcC--ChHHHHHHHHHHHHHc
Confidence            999999999762          23468999999999876      46899999974 66665  6678899999999999


Q ss_pred             cCCeEEEEEeCChH
Q 027388          197 RPGGTFIGTMPDAN  210 (224)
Q Consensus       197 k~gG~li~~~~~~~  210 (224)
                      ||||++++..++..
T Consensus       136 kpgG~lii~~~~~~  149 (251)
T d1wzna1         136 KPGGVFITDFPCWF  149 (251)
T ss_dssp             EEEEEEEEEEEC--
T ss_pred             CCCcEEEEEeccch
Confidence            99999999877643

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.88  E-value=4e-22  Score=154.78  Aligned_cols=151  Identities=21%  Similarity=0.327  Sum_probs=110.5

Q ss_pred             HHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChh
Q 027388           39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG  118 (224)
Q Consensus        39 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~  118 (224)
                      .|+++|..|+.......         .......++...+.. ...++++|||||||+|+++..+++.+ .+++|||+|+.
T Consensus         2 ~y~~~A~~YD~l~~~~~---------~y~~~~~~~~~~~~~-~~~~~~~vLDiGCG~G~~~~~l~~~g-~~v~GvD~S~~   70 (246)
T d1y8ca_           2 CYNKFAHIYDKLIRADV---------DYKKWSDFIIEKCVE-NNLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQE   70 (246)
T ss_dssp             CHHHHHHHHHHHTTCSC---------CHHHHHHHHHHHHHT-TTCCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHH
T ss_pred             CHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHH-hCCCCCeEEEEeCcCCHHHHHHHHhC-CccEeeccchh
Confidence            46778888875332211         011222223222222 23456899999999999999998655 48999999999


Q ss_pred             HHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEc-cccccccCCHHHHHHHHHHHHhhcc
Q 027388          119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQ-FAMHYSWSTEARARRALANVSALLR  197 (224)
Q Consensus       119 ~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~-~~l~~~~~~~~~~~~~l~~~~~~lk  197 (224)
                      |++.|+++...          ...+++++++|+.+++.      .+.||+|+|. .+++|+ .+.+++..+++++.+.|+
T Consensus        71 ml~~A~~~~~~----------~~~~v~~~~~d~~~~~~------~~~fD~i~~~~~~~~~~-~~~~~~~~~l~~~~~~Lk  133 (246)
T d1y8ca_          71 MLSEAENKFRS----------QGLKPRLACQDISNLNI------NRKFDLITCCLDSTNYI-IDSDDLKKYFKAVSNHLK  133 (246)
T ss_dssp             HHHHHHHHHHH----------TTCCCEEECCCGGGCCC------SCCEEEEEECTTGGGGC-CSHHHHHHHHHHHHTTEE
T ss_pred             hhhhccccccc----------cCccceeeccchhhhcc------cccccccceeeeeeecc-CCHHHHHHHHHHHHHhCC
Confidence            99999998762          23468999999988764      5789999986 466664 456789999999999999


Q ss_pred             CCeEEEEEeCChHHHHHHhh
Q 027388          198 PGGTFIGTMPDANVIIKKLR  217 (224)
Q Consensus       198 ~gG~li~~~~~~~~~~~~~~  217 (224)
                      |||.|++...+...+...+.
T Consensus       134 pgG~~i~~~~~~~~~~~~~~  153 (246)
T d1y8ca_         134 EGGVFIFDINSYYKLSQVLG  153 (246)
T ss_dssp             EEEEEEEEEECHHHHHTTTT
T ss_pred             CCeEEEEEeCCHHHHhhhcc
Confidence            99999998887776655444

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=3.7e-22  Score=152.59  Aligned_cols=114  Identities=25%  Similarity=0.373  Sum_probs=97.8

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ++++.+|||||||+|.++..+++. ..+++|+|+|+.|++.|++++...          ...+.++++|+.+++.     
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~----------~~~~~~~~~d~~~l~~-----   98 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSR----------ESNVEFIVGDARKLSF-----   98 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHT----------TCCCEEEECCTTSCCS-----
T ss_pred             cCCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccc----------cccccccccccccccc-----
Confidence            467789999999999999998865 458999999999999999887521          3457889999998876     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHH
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII  213 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~  213 (224)
                      +.++||+|+|..+++|+  +..++.++++++.++|||||.+++..++...+.
T Consensus        99 ~~~~fD~I~~~~~l~~~--~~~d~~~~l~~i~~~LkpgG~lii~~~~~~~~~  148 (226)
T d1ve3a1          99 EDKTFDYVIFIDSIVHF--EPLELNQVFKEVRRVLKPSGKFIMYFTDLRELL  148 (226)
T ss_dssp             CTTCEEEEEEESCGGGC--CHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHG
T ss_pred             cCcCceEEEEecchhhC--ChhHHHHHHHHHHHHcCcCcEEEEEEcCchhhh
Confidence            67899999999999998  667899999999999999999999988765443

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=4.9e-22  Score=153.22  Aligned_cols=111  Identities=23%  Similarity=0.395  Sum_probs=96.7

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      ++....++++.+|||||||+|.++..+++. ..+++|||+|+.|++.|++++..        .++ .++.++++|+.+++
T Consensus         8 l~~~~~~~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~--------~~~-~~~~~~~~d~~~~~   77 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQE--------KGV-ENVRFQQGTAESLP   77 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHH--------HTC-CSEEEEECBTTBCC
T ss_pred             HHHHhCCCCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhcc--------ccc-cccccccccccccc
Confidence            556667889999999999999999998764 46999999999999999998762        122 35999999999887


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +     ++++||+|+|.++++|+    +++..+++++.++|||||++++.
T Consensus        78 ~-----~~~~fD~v~~~~~l~~~----~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          78 F-----PDDSFDIITCRYAAHHF----SDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             S-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             c-----cccccceeeeeceeecc----cCHHHHHHHHHHeeCCCcEEEEE
Confidence            7     67899999999999998    67899999999999999998885

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.87  E-value=4e-22  Score=157.85  Aligned_cols=108  Identities=19%  Similarity=0.161  Sum_probs=96.4

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      .+.++.+|||||||+|.++..+++....+|+|||+|+.+++.|+++..        ..++..+++++++|+.+++.    
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~--------~~gl~~~v~~~~~d~~~l~~----  131 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNN--------QAGLADNITVKYGSFLEIPC----  131 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH--------HHTCTTTEEEEECCTTSCSS----
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccc--------cccccccccccccccccccc----
Confidence            467889999999999999999887656689999999999999999876        45667789999999999887    


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ++++||+|++..+++|+    +++..+++++.++|||||+|++.
T Consensus       132 -~~~sfD~V~~~~~l~h~----~d~~~~l~~~~~~LkpgG~l~~~  171 (282)
T d2o57a1         132 -EDNSYDFIWSQDAFLHS----PDKLKVFQECARVLKPRGVMAIT  171 (282)
T ss_dssp             -CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -cccccchhhccchhhhc----cCHHHHHHHHHHhcCCCcEEEEE
Confidence             57899999999999998    56789999999999999999986

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.87  E-value=3e-21  Score=150.49  Aligned_cols=132  Identities=14%  Similarity=0.123  Sum_probs=108.4

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      .+.++..+...+..+|||+|||+|+++..++...+..|++||+|+.|++.|++++..           ..+++++++|+.
T Consensus        82 s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~-----------~~~~~~~~~d~~  150 (254)
T d1xtpa_          82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-----------MPVGKFILASME  150 (254)
T ss_dssp             HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-----------SSEEEEEESCGG
T ss_pred             HHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc-----------cccceeEEcccc
Confidence            334445555567789999999999999988777777899999999999999988762           234789999998


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC------------------ChHHHHH
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP------------------DANVIIK  214 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~------------------~~~~~~~  214 (224)
                      +++.     +.+.||+|++.++++|+  +.++..++|+++.+.|+|||.+++..+                  ....+.+
T Consensus       151 ~~~~-----~~~~fD~I~~~~vl~hl--~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~  223 (254)
T d1xtpa_         151 TATL-----PPNTYDLIVIQWTAIYL--TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKR  223 (254)
T ss_dssp             GCCC-----CSSCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHH
T ss_pred             cccc-----CCCccceEEeecccccc--chhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHH
Confidence            8876     57899999999999998  667788999999999999999998521                  2346788


Q ss_pred             Hhhhcccc
Q 027388          215 KLREEHFC  222 (224)
Q Consensus       215 ~~~~~gf~  222 (224)
                      .|.++||.
T Consensus       224 l~~~aGf~  231 (254)
T d1xtpa_         224 LFNESGVR  231 (254)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHcCCE
Confidence            88888873

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.2e-21  Score=152.05  Aligned_cols=116  Identities=21%  Similarity=0.243  Sum_probs=99.2

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..+...+.+.++.+|||||||+|.++..+++....+++|||+|+.|++.|+++..        ..++..+++++++|+.
T Consensus        22 ~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~--------~~gl~~~v~~~~~d~~   93 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAE--------ELGVSERVHFIHNDAA   93 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHH--------HTTCTTTEEEEESCCT
T ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHH--------HhhccccchhhhhHHh
Confidence            33355556678899999999999999999887666799999999999999999876        3456677999999998


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ++.      .+++||+|++..+++|+    .++..+++++.++|||||++++..
T Consensus        94 ~~~------~~~~fD~v~~~~~~~~~----~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          94 GYV------ANEKCDVAACVGATWIA----GGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             TCC------CSSCEEEEEEESCGGGT----SSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hcc------ccCceeEEEEEehhhcc----CCHHHHHHHHHHHcCcCcEEEEEe
Confidence            763      46899999999999998    567899999999999999999863

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=2.5e-21  Score=146.47  Aligned_cols=129  Identities=17%  Similarity=0.215  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCC
Q 027388           37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA  116 (224)
Q Consensus        37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s  116 (224)
                      -+.|+..++.|+.+.....           .....-+ ..+.  ...++.+|||||||+|.++..+.     +++|||+|
T Consensus         3 ~~~f~~~a~~Yd~w~~~~~-----------~~~~~~~-~~~~--~~~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s   63 (208)
T d1vlma_           3 WHIFERFVNEYERWFLVHR-----------FAYLSEL-QAVK--CLLPEGRGVEIGVGTGRFAVPLK-----IKIGVEPS   63 (208)
T ss_dssp             THHHHHTHHHHHHHHHHTH-----------HHHHHHH-HHHH--HHCCSSCEEEETCTTSTTHHHHT-----CCEEEESC
T ss_pred             HHHHHHHHHHHHHHHHHhH-----------HHHHHHH-HHHH--hhCCCCeEEEECCCCcccccccc-----eEEEEeCC
Confidence            4678888888876432211           0111111 1121  23456789999999999887763     56899999


Q ss_pred             hhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhc
Q 027388          117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL  196 (224)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~l  196 (224)
                      +.+++.|+++                ++.++++|+.+++.     .+++||+|++..+++|+    +++..+++++.++|
T Consensus        64 ~~~~~~a~~~----------------~~~~~~~d~~~l~~-----~~~~fD~I~~~~~l~h~----~d~~~~l~~~~~~L  118 (208)
T d1vlma_          64 ERMAEIARKR----------------GVFVLKGTAENLPL-----KDESFDFALMVTTICFV----DDPERALKEAYRIL  118 (208)
T ss_dssp             HHHHHHHHHT----------------TCEEEECBTTBCCS-----CTTCEEEEEEESCGGGS----SCHHHHHHHHHHHE
T ss_pred             hhhccccccc----------------cccccccccccccc-----ccccccccccccccccc----cccccchhhhhhcC
Confidence            9999999875                37899999998876     57899999999999998    56889999999999


Q ss_pred             cCCeEEEEEeCCh
Q 027388          197 RPGGTFIGTMPDA  209 (224)
Q Consensus       197 k~gG~li~~~~~~  209 (224)
                      +|||.+++.+++.
T Consensus       119 ~pgG~l~i~~~~~  131 (208)
T d1vlma_         119 KKGGYLIVGIVDR  131 (208)
T ss_dssp             EEEEEEEEEEECS
T ss_pred             CCCceEEEEecCC
Confidence            9999999986653

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.85  E-value=1.5e-20  Score=143.89  Aligned_cols=108  Identities=19%  Similarity=0.370  Sum_probs=91.0

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      ...++.+|||||||+|..+..+++.   ...+++|+|+|+.|++.|++++..        .....++.+..+|+.+.+  
T Consensus        36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~--------~~~~~~~~~~~~d~~~~~--  105 (225)
T d1im8a_          36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA--------YHSEIPVEILCNDIRHVE--  105 (225)
T ss_dssp             HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT--------SCCSSCEEEECSCTTTCC--
T ss_pred             hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh--------hcccchhhhccchhhccc--
Confidence            4567889999999999999988763   455899999999999999998762        234455778888877654  


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                           ...+|+|++..+++|+  +.+++.++++++++.|+|||.|++.
T Consensus       106 -----~~~~d~i~~~~~l~~~--~~~d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         106 -----IKNASMVILNFTLQFL--PPEDRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             -----CCSEEEEEEESCGGGS--CGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----cccceeeEEeeecccc--ChhhHHHHHHHHHHhCCCCceeecc
Confidence                 4689999999999998  6678999999999999999999986

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=5.4e-20  Score=144.98  Aligned_cols=115  Identities=12%  Similarity=0.150  Sum_probs=97.1

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..++..+.+.++.+|||||||+|.++..+++....+|+|+|+|+.+++.|++++.        ..++...+.+...|..
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~--------~~~l~~~~~~~~~d~~  112 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLA--------SIDTNRSRQVLLQGWE  112 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH--------TSCCSSCEEEEESCGG
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHH--------hhccccchhhhhhhhh
Confidence            44455666778999999999999999998887766799999999999999999987        3455566777777765


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ++        +++||.|++..+++|+  +......+++++.++|||||.+++.
T Consensus       113 ~~--------~~~fD~i~si~~~eh~--~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         113 DF--------AEPVDRIVSIEAFEHF--GHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             GC--------CCCCSEEEEESCGGGT--CGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hh--------ccchhhhhHhhHHHHh--hhhhHHHHHHHHHhccCCCceEEEE
Confidence            43        4689999999999998  6667899999999999999999985

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.82  E-value=2.6e-20  Score=142.63  Aligned_cols=106  Identities=17%  Similarity=0.204  Sum_probs=90.9

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++++|||||||+|.++..++.. ..+|+|||+|+.+++.|+++..             .++.++++++.+...      
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~~-------------~~~~~~~~~~~~~~~------   78 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLK-------------DGITYIHSRFEDAQL------   78 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSC-------------SCEEEEESCGGGCCC------
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhcccc-------------ccccccccccccccc------
Confidence            46779999999999999988654 4589999999999999998865             248899999887654      


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHH-hhccCCeEEEEEeCChHHH
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVS-ALLRPGGTFIGTMPDANVI  212 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~-~~lk~gG~li~~~~~~~~~  212 (224)
                      ++.||+|++..+++|+    +++..++.++. ++|+|||.+++.+||...+
T Consensus        79 ~~~fD~I~~~~vleh~----~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~  125 (225)
T d2p7ia1          79 PRRYDNIVLTHVLEHI----DDPVALLKRINDDWLAEGGRLFLVCPNANAV  125 (225)
T ss_dssp             SSCEEEEEEESCGGGC----SSHHHHHHHHHHTTEEEEEEEEEEEECTTCH
T ss_pred             ccccccccccceeEec----CCHHHHHHHHHHHhcCCCceEEEEeCCcccH
Confidence            5789999999999998    67889999998 7899999999998875544

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.82  E-value=4.1e-20  Score=138.23  Aligned_cols=128  Identities=17%  Similarity=0.155  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccc---cccCCCCeeEE
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR---RKKFSFPARLI  147 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~---~~~~~~~v~~~  147 (224)
                      ..++..+..+.+.++.+|||+|||+|+.+..++..+ .+|+|+|+|+.|++.|+++..........   ...-...+.++
T Consensus         7 ~~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (201)
T d1pjza_           7 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW   85 (201)
T ss_dssp             HHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcC-CceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence            445555666677899999999999999999998665 49999999999999999987632211000   00012346788


Q ss_pred             eccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       148 ~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ++|+..++..    ....||+|++..+++++  +..+...+++++.+.|||||.+++.
T Consensus        86 ~~d~~~l~~~----~~~~~D~i~~~~~l~~l--~~~~~~~~~~~i~~~LkpgG~l~l~  137 (201)
T d1pjza_          86 CGDFFALTAR----DIGHCAAFYDRAAMIAL--PADMRERYVQHLEALMPQACSGLLI  137 (201)
T ss_dssp             EECCSSSTHH----HHHSEEEEEEESCGGGS--CHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             cccccccccc----cccceeEEEEEeeeEec--chhhhHHHHHHHHHhcCCCcEEEEE
Confidence            8888776542    24689999999999998  7778899999999999999998775

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.81  E-value=1.3e-19  Score=143.13  Aligned_cols=107  Identities=21%  Similarity=0.356  Sum_probs=91.7

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++.+|||||||+|.++..++..  ...+|+|+|+|+.+++.|+++...          .+.+++|.++|+.+++.   
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~----------~~~~~~f~~~d~~~~~~---   91 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL----------LPYDSEFLEGDATEIEL---   91 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS----------SSSEEEEEESCTTTCCC---
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc----------ccccccccccccccccc---
Confidence            467889999999999999988754  245899999999999999998762          24468999999988764   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                         .++||+|++..+++|+    +++..+++++.++|||||.+++..|+
T Consensus        92 ---~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          92 ---NDKYDIAICHAFLLHM----TTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             ---SSCEEEEEEESCGGGC----SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ---cCCceEEEEehhhhcC----CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence               4689999999999998    56789999999999999999988765

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.80  E-value=2.1e-19  Score=134.82  Aligned_cols=107  Identities=16%  Similarity=0.171  Sum_probs=90.3

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ...+.+|||||||+|.++..+++.+ .+++|+|+|+.+++.++++...        .++ .++.+...|+.....     
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g-~~v~gvD~s~~~l~~a~~~~~~--------~~~-~~~~~~~~d~~~~~~-----   92 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANG-YDVTAWDKNPASMANLERIKAA--------EGL-DNLQTDLVDLNTLTF-----   92 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHH--------TTC-TTEEEEECCTTTCCC-----
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHh-hhhccccCcHHHHHHHHHHhhh--------ccc-cchhhhheecccccc-----
Confidence            3456699999999999999998654 5899999999999999988762        223 248899999887764     


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                       +++||+|++..+++|+  +.++..++++++.++|+|||++++.+
T Consensus        93 -~~~fD~I~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1          93 -DGEYDFILSTVVMMFL--EAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             -CCCEEEEEEESCGGGS--CTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -cccccEEEEeeeeecC--CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence             5789999999999998  55678899999999999999988864

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.1e-18  Score=136.73  Aligned_cols=109  Identities=19%  Similarity=0.347  Sum_probs=91.2

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      .+......++.+|||||||+|.++..+++.. ...++|+|+|+.|++.|+++..              ++.+.++|+.++
T Consensus        76 ~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~--------------~~~~~~~d~~~l  141 (268)
T d1p91a_          76 QLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP--------------QVTFCVASSHRL  141 (268)
T ss_dssp             HHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCTTSC
T ss_pred             HHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc--------------cccceeeehhhc
Confidence            3334445678899999999999999988664 4589999999999999998755              589999999998


Q ss_pred             ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHH
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK  214 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~  214 (224)
                      ++     ++++||+|++.++++++           .++.|+|||||.|++.+|+.+.+.+
T Consensus       142 ~~-----~~~sfD~v~~~~~~~~~-----------~e~~rvLkpgG~l~~~~p~~~~l~e  185 (268)
T d1p91a_         142 PF-----SDTSMDAIIRIYAPCKA-----------EELARVVKPGGWVITATPGPRHLME  185 (268)
T ss_dssp             SB-----CTTCEEEEEEESCCCCH-----------HHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             cC-----CCCCEEEEeecCCHHHH-----------HHHHHHhCCCcEEEEEeeCCcchHH
Confidence            87     67899999999888753           5689999999999999998766554

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=5.1e-19  Score=139.41  Aligned_cols=115  Identities=17%  Similarity=0.194  Sum_probs=98.5

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..++..+.+.++.+|||||||.|..+..+++...++|+|+++|+..++.|+++..        ..++..++++..+|+.
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~--------~~g~~~~v~~~~~d~~  122 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVA--------NSENLRSKRVLLAGWE  122 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH--------TCCCCSCEEEEESCGG
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHH--------hhhhhhhhHHHHhhhh
Confidence            44455566788999999999999999999888777899999999999999999876        3466778999999986


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .+        +++||.|++.++++|+  .......+++++.++|+|||.+++.
T Consensus       123 ~~--------~~~fD~i~si~~~eh~--~~~~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         123 QF--------DEPVDRIVSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             GC--------CCCCSEEEEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             cc--------cccccceeeehhhhhc--CchhHHHHHHHHHhhcCCCCcEEEE
Confidence            54        3689999999999998  5566789999999999999999874

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=1.4e-18  Score=137.27  Aligned_cols=117  Identities=16%  Similarity=0.115  Sum_probs=97.4

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      ++.++..+.+.++.+|||||||.|.++..+++...++++|+++|+..++.++++..        ..++...+.+...|..
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~--------~~~l~~~v~~~~~d~~  121 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFD--------EVDSPRRKEVRIQGWE  121 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH--------HSCCSSCEEEEECCGG
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHH--------hhccchhhhhhhhccc
Confidence            45555667788999999999999999999987777899999999999999999877        3456667888888763


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCC-----HHHHHHHHHHHHhhccCCeEEEEE
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWST-----EARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~-----~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .        .+++||.|++..+++|+-+.     .+....+++++.++|||||.+++.
T Consensus       122 ~--------~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~  171 (291)
T d1kpia_         122 E--------FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH  171 (291)
T ss_dssp             G--------CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             c--------cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence            2        35789999999999998321     246789999999999999999975

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=3.3e-18  Score=135.71  Aligned_cols=135  Identities=19%  Similarity=0.248  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe
Q 027388           69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC  148 (224)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~  148 (224)
                      ...|+..++   ....+.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++....+..     .......+..
T Consensus        44 ~~~~l~~~l---~~~~~~~vLD~GcG~G~~~~~la~~g-~~v~gvD~S~~ml~~A~~~~~~~~~~-----~~~~~~~~~~  114 (292)
T d1xvaa_          44 YKAWLLGLL---RQHGCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKYALKERWNRRKE-----PAFDKWVIEE  114 (292)
T ss_dssp             HHHHHHHHH---HHTTCCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTTS-----HHHHTCEEEE
T ss_pred             HHHHHHHHh---hhcCCCEEEEecCCCcHHHHHHHHcC-CeeeeccCchHHHHHHHHHHHhcccc-----cccceeeeee
Confidence            344544443   33567899999999999999998664 48999999999999999886522110     0001123445


Q ss_pred             ccccccccccccCCCCCeeEEEEcc-ccccccC---CHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHH
Q 027388          149 GDCYEVHLDKVLADDAPFDICSCQF-AMHYSWS---TEARARRALANVSALLRPGGTFIGTMPDANVIIK  214 (224)
Q Consensus       149 ~d~~~~~~~~~~~~~~~~D~i~~~~-~l~~~~~---~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~  214 (224)
                      +++...+..  ....+.||+|+|.+ +++|+.+   ...+...+|+++.++|||||+|++.+.|.+.+..
T Consensus       115 ~~~~~~~~~--~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~  182 (292)
T d1xvaa_         115 ANWLTLDKD--VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILS  182 (292)
T ss_dssp             CCGGGHHHH--SCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred             ccccccccc--cCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCHHHHhh
Confidence            555433211  11357899999864 7888743   2367889999999999999999999998876654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.77  E-value=3.3e-18  Score=127.05  Aligned_cols=127  Identities=21%  Similarity=0.244  Sum_probs=102.6

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ..++..+.+.++.+|||+|||+|.++..++.. ..+|+++|+++.+++.|++++.        ..++..+++++++|+.+
T Consensus        23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~--------~~gl~~~v~~~~gda~~   93 (186)
T d1l3ia_          23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQ--------RHGLGDNVTLMEGDAPE   93 (186)
T ss_dssp             HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHH--------HTTCCTTEEEEESCHHH
T ss_pred             HHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHH--------HcCCCcceEEEECchhh
Confidence            33555667889999999999999999998754 5699999999999999999987        45666789999999877


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhccc
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEHF  221 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~gf  221 (224)
                      ...     ....||+|++....++       ...++..+.+.|||||++++.....   ..+.+.+++.||
T Consensus        94 ~~~-----~~~~~D~v~~~~~~~~-------~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~  152 (186)
T d1l3ia_          94 ALC-----KIPDIDIAVVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF  152 (186)
T ss_dssp             HHT-----TSCCEEEEEESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             ccc-----ccCCcCEEEEeCcccc-------chHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCC
Confidence            654     4689999999887654       3568999999999999999887654   345556666665

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.3e-19  Score=136.45  Aligned_cols=139  Identities=17%  Similarity=0.158  Sum_probs=97.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccccc--------------------CCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK--------------------FSF  142 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~  142 (224)
                      .++.+|||||||+|.++..++......|+|+|+|+.|++.|++++............                    ...
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            456799999999999887776556668999999999999999987633211100000                    000


Q ss_pred             Ce-eEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe---------------
Q 027388          143 PA-RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM---------------  206 (224)
Q Consensus       143 ~v-~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~---------------  206 (224)
                      .+ .....+...... ......++||+|++.++++|+....+++..+++++.++|||||.+++..               
T Consensus       130 ~~~~~~~~~~~~~~~-~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~  208 (257)
T d2a14a1         130 AVKRVLKCDVHLGNP-LAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS  208 (257)
T ss_dssp             HEEEEEECCTTSSST-TTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred             hhhcccccccccccc-cccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence            00 111111111111 0111568999999999999986677889999999999999999999863               


Q ss_pred             ---CChHHHHHHhhhcccc
Q 027388          207 ---PDANVIIKKLREEHFC  222 (224)
Q Consensus       207 ---~~~~~~~~~~~~~gf~  222 (224)
                         .....+.+.|.++||.
T Consensus       209 ~~~~~~~~~~~~l~~aGf~  227 (257)
T d2a14a1         209 CVALEKGEVEQAVLDAGFD  227 (257)
T ss_dssp             CCCCCHHHHHHHHHHTTEE
T ss_pred             ccCCCHHHHHHHHHHCCCE
Confidence               2467899999999985

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7e-18  Score=129.23  Aligned_cols=130  Identities=18%  Similarity=0.153  Sum_probs=98.8

Q ss_pred             HHHHHHHHH-HHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccc--------ccccccC
Q 027388           70 NNWIKSVLV-QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH--------HQRRKKF  140 (224)
Q Consensus        70 ~~~~~~~~~-~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~--------~~~~~~~  140 (224)
                      ..++...+. .+...++.+|||+|||+|..+..++..+. +|+|||+|+.+++.|+++.......        .......
T Consensus        30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (229)
T d2bzga1          30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS  108 (229)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence            334443433 33456788999999999999999986554 8999999999999999886532110        0001122


Q ss_pred             CCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          141 SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       141 ~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ..++.++++|+.+++..    ..+.||+|+...+++++  +.++...+++++.++|||||.+++.+
T Consensus       109 ~~~v~~~~~d~~~l~~~----~~~~fd~i~~~~~l~~~--~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         109 SGNISLYCCSIFDLPRT----NIGKFDMIWDRGALVAI--NPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             TSSEEEEESCGGGGGGS----CCCCEEEEEESSSTTTS--CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCcEEEEEcchhhcccc----ccCceeEEEEEEEEEec--cchhhHHHHHHHHhhcCCcceEEEEE
Confidence            45689999998877642    46899999999999998  66788999999999999999987763

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.9e-17  Score=129.32  Aligned_cols=140  Identities=15%  Similarity=0.153  Sum_probs=99.5

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccc--------------------ccC-C
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR--------------------KKF-S  141 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~--------------------~~~-~  141 (224)
                      ..+.++||||||+|.+....+...+.+|+++|+|+.|++.+++++..........                    ... .
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            4578999999999988765555567789999999999999998876321110000                    000 0


Q ss_pred             CCeeEEecccccccc-ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe--------------
Q 027388          142 FPARLICGDCYEVHL-DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM--------------  206 (224)
Q Consensus       142 ~~v~~~~~d~~~~~~-~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~--------------  206 (224)
                      .......+|+..... .......++||+|++.++++++.....++..+++++.++|||||+|++..              
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~  212 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL  212 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccc
Confidence            001244556643221 11111356899999999999996667789999999999999999998741              


Q ss_pred             ----CChHHHHHHhhhcccc
Q 027388          207 ----PDANVIIKKLREEHFC  222 (224)
Q Consensus       207 ----~~~~~~~~~~~~~gf~  222 (224)
                          ...+.+.+.|.++||.
T Consensus       213 ~~~~~t~e~v~~~l~~aGf~  232 (263)
T d2g72a1         213 TVVPVSEEEVREALVRSGYK  232 (263)
T ss_dssp             ECCCCCHHHHHHHHHHTTEE
T ss_pred             ccCCCCHHHHHHHHHHCCCe
Confidence                2568899999999985

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.74  E-value=2.8e-17  Score=127.65  Aligned_cols=111  Identities=20%  Similarity=0.233  Sum_probs=91.3

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      +........++|||||||+|.++..+++.. ..+++++|+ +.+++.+++++.        ..++..++.++.+|+.+. 
T Consensus        73 ~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~--------~~~~~~rv~~~~~D~~~~-  142 (253)
T d1tw3a2          73 AAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLK--------DEGLSDRVDVVEGDFFEP-  142 (253)
T ss_dssp             HHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHH--------HTTCTTTEEEEECCTTSC-
T ss_pred             HhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHH--------Hhhcccchhhccccchhh-
Confidence            334445667899999999999999998764 457889998 568999998876        345667899999998642 


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                            ...+||+|++..++|++  +.++...+|+++++.|||||.|++.
T Consensus       143 ------~~~~~D~v~~~~vlh~~--~d~~~~~~L~~~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         143 ------LPRKADAIILSFVLLNW--PDHDAVRILTRCAEALEPGGRILIH  184 (253)
T ss_dssp             ------CSSCEEEEEEESCGGGS--CHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ------cccchhheeeccccccC--CchhhHHHHHHHHHhcCCCcEEEEE
Confidence                  23679999999999998  6677889999999999999998875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=1.6e-17  Score=128.57  Aligned_cols=118  Identities=23%  Similarity=0.282  Sum_probs=94.3

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...++++|||+|||+|.+++.+++.+ .+++|+|+|+.+++.|++++..+          ..++.++++|+.+..     
T Consensus       117 ~~~~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n----------~~~~~~~~~d~~~~~-----  180 (254)
T d2nxca1         117 HLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRN----------GVRPRFLEGSLEAAL-----  180 (254)
T ss_dssp             HCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHT----------TCCCEEEESCHHHHG-----
T ss_pred             hcCccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHc----------CCceeEEeccccccc-----
Confidence            35688999999999999998877554 68999999999999999987622          234678888876432     


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE---eCChHHHHHHhhhcccc
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT---MPDANVIIKKLREEHFC  222 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~---~~~~~~~~~~~~~~gf~  222 (224)
                       +.++||+|+++...       ..+..++..+.++|||||+|+++   ....+.+.+.+++.||.
T Consensus       181 -~~~~fD~V~ani~~-------~~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~  237 (254)
T d2nxca1         181 -PFGPFDLLVANLYA-------ELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFR  237 (254)
T ss_dssp             -GGCCEEEEEEECCH-------HHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCE
T ss_pred             -cccccchhhhcccc-------ccHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCE
Confidence             35789999987544       44677889999999999999986   33567888899999985

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.7e-18  Score=128.72  Aligned_cols=151  Identities=15%  Similarity=0.107  Sum_probs=101.7

Q ss_pred             hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (224)
Q Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv  113 (224)
                      +.....|+..+..|+....... .. ..+ ....+...+++.+.... ..++.+|||||||+|..+..+++....++++|
T Consensus         7 e~~~~~w~~~~~~yd~~~~~l~-~~-~~~-~m~~w~~~~~~~la~~~-~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~i   82 (229)
T d1zx0a1           7 ENCSPAWGAAPAAYDAADTHLR-IL-GKP-VMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWII   82 (229)
T ss_dssp             CBCHHHHTTSCEEECTTSCEEE-ET-TEE-EEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEE
T ss_pred             ccchhhhhhhhhcCCcHHHHHH-Hh-chH-HHHHHHHHHHHHHHHhh-ccCCCeEEEeeccchHHHHHHHHcCCCeEEEe
Confidence            4445677777767753321110 00 000 01123334444333333 35788999999999999998886666789999


Q ss_pred             eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEE-----ccccccccCCHHHHHHH
Q 027388          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSC-----QFAMHYSWSTEARARRA  188 (224)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~-----~~~l~~~~~~~~~~~~~  188 (224)
                      |+|+.+++.|+++...          ...++.++..++......   .+.++||.|+.     ...++|+    .+...+
T Consensus        83 d~s~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~~~---~~~~~fD~i~fD~~~~~~~~~~~----~~~~~~  145 (229)
T d1zx0a1          83 ECNDGVFQRLRDWAPR----------QTHKVIPLKGLWEDVAPT---LPDGHFDGILYDTYPLSEETWHT----HQFNFI  145 (229)
T ss_dssp             ECCHHHHHHHHHHGGG----------CSSEEEEEESCHHHHGGG---SCTTCEEEEEECCCCCBGGGTTT----HHHHHH
T ss_pred             CCCHHHHHHHHHHhhh----------cccccccccccccccccc---cccccccceeecccccccccccc----cCHHHH
Confidence            9999999999999762          244467777776544221   14688999984     4455655    789999


Q ss_pred             HHHHHhhccCCeEEEEE
Q 027388          189 LANVSALLRPGGTFIGT  205 (224)
Q Consensus       189 l~~~~~~lk~gG~li~~  205 (224)
                      ++++.++|||||+|++.
T Consensus       146 ~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         146 KNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             HHTHHHHEEEEEEEEEC
T ss_pred             HHHHHHHcCCCcEEEEE
Confidence            99999999999999874

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=8.8e-17  Score=119.97  Aligned_cols=115  Identities=17%  Similarity=0.277  Sum_probs=91.3

Q ss_pred             HHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEeccccccc
Q 027388           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVH  155 (224)
Q Consensus        77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~  155 (224)
                      +..+...++.+|||+|||+|.++..++. ...+++++|+|+.+++.+++++..+        .+ ..++++..+|+.+. 
T Consensus        45 i~~l~~~~~~~VLDiGcG~G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~--------~l~~~~i~~~~~d~~~~-  114 (194)
T d1dusa_          45 VENVVVDKDDDILDLGCGYGVIGIALAD-EVKSTTMADINRRAIKLAKENIKLN--------NLDNYDIRVVHSDLYEN-  114 (194)
T ss_dssp             HHHCCCCTTCEEEEETCTTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHT--------TCTTSCEEEEECSTTTT-
T ss_pred             HHhCCcCCCCeEEEEeecCChhHHHHHh-hccccceeeeccccchhHHHHHHHh--------CCccceEEEEEcchhhh-
Confidence            3445567889999999999999998875 4569999999999999999987622        22 23588999998652 


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      .     .++.||+|+++.++++.   .+....++..+.+.|+|||.+++.....
T Consensus       115 ~-----~~~~fD~Ii~~~p~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         115 V-----KDRKYNKIITNPPIRAG---KEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             C-----TTSCEEEEEECCCSTTC---HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             h-----ccCCceEEEEcccEEec---chhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence            3     46899999999887653   4556889999999999999988765543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.70  E-value=2.5e-17  Score=126.98  Aligned_cols=124  Identities=13%  Similarity=0.152  Sum_probs=98.0

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ++..+.+.++.+|||+|||+|.++..++..  ..++|+++|.++.+++.|++++..        .....++.+.++|+.+
T Consensus        77 Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~--------~~~~~nv~~~~~Di~~  148 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE--------FYDIGNVRTSRSDIAD  148 (250)
T ss_dssp             ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT--------TSCCTTEEEECSCTTT
T ss_pred             HHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH--------hcCCCceEEEEeeeec
Confidence            344456789999999999999999988864  456999999999999999999872        2345679999999876


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhcccc
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEHFC  222 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~gf~  222 (224)
                      ..      .+..||.|++..         .++..++..+.+.|||||+|++..|+.   ..+.+.+++.||.
T Consensus       149 ~~------~~~~fD~V~ld~---------p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~  205 (250)
T d1yb2a1         149 FI------SDQMYDAVIADI---------PDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH  205 (250)
T ss_dssp             CC------CSCCEEEEEECC---------SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred             cc------ccceeeeeeecC---------CchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCc
Confidence            53      467899998642         234468999999999999999999985   4566677788875

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.1e-17  Score=130.15  Aligned_cols=113  Identities=9%  Similarity=-0.050  Sum_probs=81.5

Q ss_pred             CCeEEEecCCCchhHHHHHhh-------cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCe--eEEeccccccc
Q 027388           85 GDVVLDLACGKGGDLIKWDKA-------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA--RLICGDCYEVH  155 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~-------~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v--~~~~~d~~~~~  155 (224)
                      ..+|||||||+|.++..++..       ....++|||+|+.|++.+++++...        ....++  .+.+.++..+.
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~~  112 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKI--------SNLENVKFAWHKETSSEYQ  112 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTC--------CSCTTEEEEEECSCHHHHH
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhc--------cccccccccchhhhhhhhc
Confidence            347999999999988877542       1236889999999999999987621        111223  33444443221


Q ss_pred             cc-cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          156 LD-KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       156 ~~-~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      .. ......+.||+|++..+++|+    +++..+++++.++|+|||.+++..++.
T Consensus       113 ~~~~~~~~~~~fD~I~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~i~~~~~  163 (280)
T d1jqea_         113 SRMLEKKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVVSG  163 (280)
T ss_dssp             HHHTTSSSCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             chhcccCCCCceeEEEEccceecC----CCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence            10 011146899999999999998    678899999999999999999886654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=1.5e-16  Score=123.41  Aligned_cols=128  Identities=20%  Similarity=0.241  Sum_probs=100.7

Q ss_pred             HHHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        75 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      .++..+.+.++.+|||+|||+|.++..++..  ..++++++|+++++++.|++++...      ......++.+.++|+.
T Consensus        87 ~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~------~~~~~~nv~~~~~d~~  160 (264)
T d1i9ga_          87 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC------YGQPPDNWRLVVSDLA  160 (264)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH------HTSCCTTEEEECSCGG
T ss_pred             HHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhh------ccCCCceEEEEecccc
Confidence            3455667889999999999999999999864  4569999999999999999987621      1123467999999998


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHH---HHHHhhh-cccc
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV---IIKKLRE-EHFC  222 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~---~~~~~~~-~gf~  222 (224)
                      +.++     +++.||.|++.     +    +++..++.++.++|||||.+++..|+.+.   +.+.++. .+|.
T Consensus       161 ~~~~-----~~~~fDaV~ld-----l----p~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~  220 (264)
T d1i9ga_         161 DSEL-----PDGSVDRAVLD-----M----LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  220 (264)
T ss_dssp             GCCC-----CTTCEEEEEEE-----S----SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             cccc-----cCCCcceEEEe-----c----CCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence            7766     57899999863     3    34567899999999999999999998754   4455543 3565

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.67  E-value=5.9e-16  Score=120.24  Aligned_cols=107  Identities=21%  Similarity=0.246  Sum_probs=88.8

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ......+|||||||+|.++..+++.. ..+++++|+ +.+++.+++++.        ..++..++.+..+|+.+ +.   
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~--------~~~~~~ri~~~~~d~~~-~~---  144 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA--------DAGLADRVTVAEGDFFK-PL---  144 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH--------HTTCTTTEEEEECCTTS-CC---
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHh--------hcCCcceeeeeeeeccc-cc---
Confidence            34566899999999999999998764 348999998 678999988876        34566778999999764 22   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                         +.+||+|++.+++|++  +.++...+|+++++.|||||+|+|.
T Consensus       145 ---p~~~D~v~~~~vLh~~--~d~~~~~lL~~i~~~LkpgG~llI~  185 (256)
T d1qzza2         145 ---PVTADVVLLSFVLLNW--SDEDALTILRGCVRALEPGGRLLVL  185 (256)
T ss_dssp             ---SCCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---cccchhhhcccccccc--CcHHHHHHHHHHHhhcCCcceeEEE
Confidence               3569999999999998  6778889999999999999988875

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.67  E-value=2.2e-16  Score=120.48  Aligned_cols=125  Identities=14%  Similarity=0.068  Sum_probs=94.6

Q ss_pred             HHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           79 QLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      .+.+.++.+|||+|||+|..+..++.. ..+.|+|||+|+.|++.++.+...           ..++..+.+|.......
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-----------~~ni~~i~~d~~~~~~~  137 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----------RENIIPILGDANKPQEY  137 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----------CTTEEEEECCTTCGGGG
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-----------hcccceEEEeeccCccc
Confidence            445688999999999999999998875 346899999999999999988662           23577788887654321


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe--------CC----hHHHHHHhhhcccc
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM--------PD----ANVIIKKLREEHFC  222 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~--------~~----~~~~~~~~~~~gf~  222 (224)
                          ....+|++++...+++.    .+...++.++.+.|||||.+++..        ..    .....+.|+++||.
T Consensus       138 ----~~~~~~v~~i~~~~~~~----~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~  206 (230)
T d1g8sa_         138 ----ANIVEKVDVIYEDVAQP----NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFK  206 (230)
T ss_dssp             ----TTTCCCEEEEEECCCST----THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEE
T ss_pred             ----ccccceeEEeeccccch----HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCE
Confidence                34566776666666655    678899999999999999988862        11    23455678888884

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=6.9e-16  Score=124.07  Aligned_cols=118  Identities=21%  Similarity=0.258  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      .|.+.+.......++++|||||||+|.++..+++.+..+|+++|.|+ +++.|++...        ..+...++.+++++
T Consensus        25 ~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~--------~~~~~~~i~~i~~~   95 (328)
T d1g6q1_          25 SYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVE--------LNGFSDKITLLRGK   95 (328)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHH--------HTTCTTTEEEEESC
T ss_pred             HHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHH--------HhCccccceEEEee
Confidence            34444444445568999999999999999988877777999999996 6778877765        34566779999999


Q ss_pred             ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                      +.++++     +..+||+|++..+.+++ ........++..+.++|||||.++
T Consensus        96 ~~~l~~-----~~~~~D~i~se~~~~~~-~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_          96 LEDVHL-----PFPKVDIIISEWMGYFL-LYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTTSCC-----SSSCEEEEEECCCBTTB-STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             hhhccC-----cccceeEEEEEecceee-ccchhHHHHHHHHHhccCCCeEEE
Confidence            998876     56899999997776554 234567888999999999999986

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=5e-16  Score=120.90  Aligned_cols=124  Identities=19%  Similarity=0.231  Sum_probs=98.9

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ++..+.+.++.+|||+|||+|.++..++..  ..++++++|+++.+++.|++++.        ..++..++.+...|+..
T Consensus        95 Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~--------~~g~~~~v~~~~~d~~~  166 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT--------KWGLIERVTIKVRDISE  166 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHH--------HTTCGGGEEEECCCGGG
T ss_pred             HHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH--------HhccccCcEEEeccccc
Confidence            455567889999999999999999998864  45699999999999999999987        34455668888888643


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH---HHHHHhhhcccc
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN---VIIKKLREEHFC  222 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~---~~~~~~~~~gf~  222 (224)
                      ..      ....||.|+..     +    +++..++.++.++|||||.|++..|..+   .+.+.+++.||.
T Consensus       167 ~~------~~~~~D~V~~d-----~----p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~  223 (266)
T d1o54a_         167 GF------DEKDVDALFLD-----V----PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI  223 (266)
T ss_dssp             CC------SCCSEEEEEEC-----C----SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred             cc------cccceeeeEec-----C----CCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence            22      35789998753     3    4456789999999999999999999864   566677788885

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.64  E-value=1.5e-15  Score=113.77  Aligned_cols=125  Identities=14%  Similarity=0.177  Sum_probs=94.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+..|||||||+|.++..+++.. ...++|+|++..++..|.++...        .++ .|+.++++|+..+..  . .
T Consensus        28 ~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~--------~~l-~Nv~~~~~Da~~l~~--~-~   95 (204)
T d2fcaa1          28 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD--------SEA-QNVKLLNIDADTLTD--V-F   95 (204)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH--------SCC-SSEEEECCCGGGHHH--H-C
T ss_pred             CCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHH--------Hhc-cCchhcccchhhhhc--c-c
Confidence            345579999999999999998763 45799999999999999988763        233 369999999876541  1 1


Q ss_pred             CCCCeeEEEEccccccccCCHHH------HHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhccc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEAR------ARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEHF  221 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~------~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~gf  221 (224)
                      +++++|.|++.+...|.  ....      ...++..+.++|||||.|++.|-+.   ..+.+.+.+.++
T Consensus        96 ~~~~~d~v~i~fp~P~~--k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~  162 (204)
T d2fcaa1          96 EPGEVKRVYLNFSDPWP--KKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL  162 (204)
T ss_dssp             CTTSCCEEEEESCCCCC--SGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             Cchhhhccccccccccc--hhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCC
Confidence            57899999988876653  1111      1479999999999999999998654   345555555553

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=9.7e-16  Score=115.76  Aligned_cols=110  Identities=16%  Similarity=0.215  Sum_probs=87.4

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      +..++..+.+.++.+|||||||+|..+..+++.  ..+.|+++|+++.+++.|++++...         ...++.++++|
T Consensus        64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~---------~~~n~~~~~~d  134 (213)
T d1dl5a1          64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL---------GIENVIFVCGD  134 (213)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT---------TCCSEEEEESC
T ss_pred             hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh---------cccccccccCc
Confidence            444666677899999999999999999888764  3468999999999999999998732         23358888999


Q ss_pred             ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ..+...     ..++||+|++..+++++  +        ..+.+.|||||+|++..
T Consensus       135 ~~~~~~-----~~~~fD~I~~~~~~~~~--p--------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         135 GYYGVP-----EFSPYDVIFVTVGVDEV--P--------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             GGGCCG-----GGCCEEEEEECSBBSCC--C--------HHHHHHEEEEEEEEEEB
T ss_pred             hHHccc-----cccchhhhhhhccHHHh--H--------HHHHHhcCCCcEEEEEE
Confidence            776543     35789999999999886  2        24677899999998854

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.1e-15  Score=120.41  Aligned_cols=119  Identities=22%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec
Q 027388           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (224)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (224)
                      ..|.+.+.......++++|||||||+|.++..+++.+..+|+++|.|+.+...++....         .+...++.++++
T Consensus        21 ~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~---------~~~~~~i~~~~~   91 (311)
T d2fyta1          21 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRL---------NKLEDTITLIKG   91 (311)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHH---------TTCTTTEEEEES
T ss_pred             HHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHH---------hCCCccceEEEe
Confidence            34444454444556789999999999999998887777799999999988765444332         355667999999


Q ss_pred             cccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                      ++.++..     +...||+|++....+++ ..+..+..++....++|+|||.++
T Consensus        92 ~~~~l~~-----~~~~~D~Ivse~~~~~~-~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          92 KIEEVHL-----PVEKVDVIISEWMGYFL-LFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CTTTSCC-----SCSCEEEEEECCCBTTB-TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             eHHHhcC-----ccccceEEEEeeeeeec-ccccccHHHHHHHHhcCCCCcEEe
Confidence            9998876     56899999997666554 344567788888899999999987

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.5e-15  Score=121.48  Aligned_cols=117  Identities=21%  Similarity=0.188  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      |.+.+.......++++|||||||+|.++..+++.+..+|+++|.|+.+ ..+++...        ..++..++.++++++
T Consensus        21 y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~--------~n~~~~~v~~~~~~~   91 (316)
T d1oria_          21 YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVK--------ANKLDHVVTIIKGKV   91 (316)
T ss_dssp             HHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHH--------HTTCTTTEEEEESCT
T ss_pred             HHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHH--------HhCCccccceEeccH
Confidence            333333333456889999999999999998887777789999999864 55555544        345677799999999


Q ss_pred             cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                      .+++.     +.++||+|++....+++ ..+.....++..+.++|+|||.++
T Consensus        92 ~~~~~-----~~~~~D~ivs~~~~~~l-~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          92 EEVEL-----PVEKVDIIISEWMGYCL-FYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             TTCCC-----SSSCEEEEEECCCBBTB-TBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             HHccc-----ccceeEEEeeeeeeeee-ccHHHHHHHHHHHHhcCCCCeEEE
Confidence            98876     56899999987766554 234457889999999999999987

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.59  E-value=2.5e-15  Score=112.99  Aligned_cols=108  Identities=13%  Similarity=0.047  Sum_probs=82.3

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      +.+.++.+|||+|||+|..+..+++. ..++|+|||+|+.|++.++++...           ..++.+++.|+.......
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-----------~~ni~~i~~d~~~~~~~~  120 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-----------RNNIIPLLFDASKPWKYS  120 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-----------CSSEEEECSCTTCGGGTT
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-----------cCCceEEEeeccCccccc
Confidence            45678999999999999999988864 446899999999999999988752           236889999987654421


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      .  ....+|+|++.  +.+.    .+...+++++.+.|||||.+++..
T Consensus       121 ~--~~~~vd~v~~~--~~~~----~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         121 G--IVEKVDLIYQD--IAQK----NQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             T--TCCCEEEEEEC--CCST----THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c--ccceEEEEEec--ccCh----hhHHHHHHHHHHHhccCCeEEEEE
Confidence            1  23456655543  3332    567889999999999999998863

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.59  E-value=1.3e-14  Score=108.52  Aligned_cols=124  Identities=14%  Similarity=0.150  Sum_probs=92.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .....|||||||+|.++..+++.. ...++|+|++..++..|.++...        .++ .|+.++++|+..+..  . .
T Consensus        30 ~~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~--------~~l-~Ni~~~~~da~~l~~--~-~   97 (204)
T d1yzha1          30 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE--------VGV-PNIKLLWVDGSDLTD--Y-F   97 (204)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--------HCC-SSEEEEECCSSCGGG--T-S
T ss_pred             CCCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhh--------hcc-ccceeeecCHHHHhh--h-c
Confidence            345689999999999999998764 45799999999999999888762        233 359999999987641  1 1


Q ss_pred             CCCCeeEEEEccccccccCCHH------HHHHHHHHHHhhccCCeEEEEEeCChH---HHHHHhhhcc
Q 027388          162 DDAPFDICSCQFAMHYSWSTEA------RARRALANVSALLRPGGTFIGTMPDAN---VIIKKLREEH  220 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~------~~~~~l~~~~~~lk~gG~li~~~~~~~---~~~~~~~~~g  220 (224)
                      +..++|.|++.+.--|.  ...      -...++..+.++|+|||.|++.|-+.+   .+.+.+.+.+
T Consensus        98 ~~~~~~~i~i~fPdPw~--K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~  163 (204)
T d1yzha1          98 EDGEIDRLYLNFSDPWP--KKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYG  163 (204)
T ss_dssp             CTTCCSEEEEESCCCCC--SGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             cCCceehhccccccccc--chhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCC
Confidence            57899999987754432  110      126799999999999999999987654   3344444444

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-15  Score=121.12  Aligned_cols=126  Identities=14%  Similarity=0.136  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccc-cCCCCeeEEe
Q 027388           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK-KFSFPARLIC  148 (224)
Q Consensus        71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~v~~~~  148 (224)
                      ..+..++....+.++.+|||||||+|.++..++.. +..+++|||+|+.+++.|++......... +.. .-..++++++
T Consensus       138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~-~~~g~~~~~i~~~~  216 (328)
T d1nw3a_         138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWM-KWYGKKHAEYTLER  216 (328)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHH-HHHTCCCCCEEEEE
T ss_pred             HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHh-hhccccCCceEEEE
Confidence            44556666667788999999999999999988765 44579999999999999987754210000 000 0134689999


Q ss_pred             ccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       149 ~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      +|+.+.+..+.   ...+|+|+++... |.    +++...+.++.+.|||||.++..
T Consensus       217 gd~~~~~~~~~---~~~advi~~~~~~-f~----~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         217 GDFLSEEWRER---IANTSVIFVNNFA-FG----PEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             CCTTSHHHHHH---HHHCSEEEECCTT-TC----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             Ccccccccccc---cCcceEEEEccee-cc----hHHHHHHHHHHHhCCCCcEEEEe
Confidence            99988765211   1235788876543 33    78899999999999999999874

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=8.1e-14  Score=108.41  Aligned_cols=176  Identities=9%  Similarity=0.059  Sum_probs=120.9

Q ss_pred             cchhhHHHHHHHHHHhhhccccch---------hhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHH
Q 027388           32 EDESTKVFARKVADHYSRRTNQTL---------EEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW  102 (224)
Q Consensus        32 ~~~~~~~~~~~~~~~y~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l  102 (224)
                      .++....++.-+.++-...+-+..         .-.-....+.++...+.+...........+.+|||+|||+|..++.+
T Consensus        47 ~~~~~~~~~~~~~rr~~g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~l  126 (274)
T d2b3ta1          47 TDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALAL  126 (274)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCcChhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHH
Confidence            344455666666666665553322         11123344555666665544443334456778999999999999998


Q ss_pred             Hhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccc-----
Q 027388          103 DKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH-----  176 (224)
Q Consensus       103 ~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~-----  176 (224)
                      +.. ...+++++|+|+.+++.|++++..        .++ .++.++++|+.+..      ....||+|+++-...     
T Consensus       127 a~~~p~~~v~avDis~~Al~~A~~Na~~--------~~~-~~v~~~~~d~~~~~------~~~~fDlIvsNPPYi~~~~~  191 (274)
T d2b3ta1         127 ASERPDCEIIAVDRMPDAVSLAQRNAQH--------LAI-KNIHILQSDWFSAL------AGQQFAMIVSNPPYIDEQDP  191 (274)
T ss_dssp             HHHCTTSEEEEECSSHHHHHHHHHHHHH--------HTC-CSEEEECCSTTGGG------TTCCEEEEEECCCCBCTTCH
T ss_pred             HhhCCcceeeeccchhHHHhHHHHHHHH--------hCc-ccceeeeccccccc------CCCceeEEEecchhhhhhhh
Confidence            765 456899999999999999999862        233 35999999986532      357999999984321     


Q ss_pred             --------cc----cC----CHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhhcccc
Q 027388          177 --------YS----WS----TEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREEHFC  222 (224)
Q Consensus       177 --------~~----~~----~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~~gf~  222 (224)
                              |-    +.    +......++....+.|+|||.+++....  ...+.+.+.+.||.
T Consensus       192 ~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~  255 (274)
T d2b3ta1         192 HLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYH  255 (274)
T ss_dssp             HHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCT
T ss_pred             cccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCC
Confidence                    00    00    1134567889999999999999998653  47788889999985

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.5e-14  Score=109.90  Aligned_cols=114  Identities=23%  Similarity=0.260  Sum_probs=85.5

Q ss_pred             HHHHHH--hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388           75 SVLVQL--YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (224)
Q Consensus        75 ~~~~~~--~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (224)
                      .+++.+  ...++.+|||||||+|..+..++..  ..++|+++|+++.+++.|++++...+..+    ....++.+.++|
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~----~~~~~~~~~~gD  140 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL----LSSGRVQLVVGD  140 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHH----HHTSSEEEEESC
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccc----ccccceEEEEee
Confidence            344444  5678899999999999888777654  35689999999999999998876211110    112457889999


Q ss_pred             ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ......     ....||+|++..+++++  +        ..+.+.|||||+|++-..
T Consensus       141 ~~~~~~-----~~~~fD~I~~~~~~~~i--p--------~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         141 GRMGYA-----EEAPYDAIHVGAAAPVV--P--------QALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             GGGCCG-----GGCCEEEEEECSBBSSC--C--------HHHHHTEEEEEEEEEEES
T ss_pred             cccccc-----hhhhhhhhhhhcchhhc--C--------HHHHhhcCCCcEEEEEEc
Confidence            876544     46789999999998876  2        247789999999998654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.9e-14  Score=114.67  Aligned_cols=128  Identities=18%  Similarity=0.245  Sum_probs=92.7

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCccc--ccccccCCCCeeEEeccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADH--HQRRKKFSFPARLICGDC  151 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~v~~~~~d~  151 (224)
                      ++..+.+.++.+|||+|||+|.++..++..  ..++|+++|+++.+++.|++++...+..  .........++.+.++|+
T Consensus        90 Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di  169 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI  169 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred             HHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecch
Confidence            455567889999999999999999998864  4569999999999999999987622110  001124456799999998


Q ss_pred             cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHH
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK  215 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~  215 (224)
                      .+.....   ....||.|+...         +++..++.++.++|||||+|++..|+...+.+.
T Consensus       170 ~~~~~~~---~~~~fD~V~LD~---------p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~  221 (324)
T d2b25a1         170 SGATEDI---KSLTFDAVALDM---------LNPHVTLPVFYPHLKHGGVCAVYVVNITQVIEL  221 (324)
T ss_dssp             TCCC----------EEEEEECS---------SSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHH
T ss_pred             hhccccc---CCCCcceEeecC---------cCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHH
Confidence            7653210   357899998632         223458899999999999999999988655443

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.52  E-value=7e-14  Score=105.77  Aligned_cols=104  Identities=19%  Similarity=0.166  Sum_probs=83.3

Q ss_pred             HHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        75 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      .++..+.+.++.+|||||||+|.++..++.. .++|+++|+++.+++.|++++..           ..++.++++|....
T Consensus        61 ~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~-----------~~nv~~~~~d~~~g  128 (224)
T d1vbfa_          61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSY-----------YNNIKLILGDGTLG  128 (224)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTT-----------CSSEEEEESCGGGC
T ss_pred             HHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhc-----------ccccccccCchhhc
Confidence            3566667889999999999999988877654 56999999999999999988652           34699999997653


Q ss_pred             ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..     ...+||.|++..++.++  +        ..+.+.|+|||+|++-
T Consensus       129 ~~-----~~~pfD~Iiv~~a~~~i--p--------~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         129 YE-----EEKPYDRVVVWATAPTL--L--------CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             CG-----GGCCEEEEEESSBBSSC--C--------HHHHHTEEEEEEEEEE
T ss_pred             ch-----hhhhHHHHHhhcchhhh--h--------HHHHHhcCCCCEEEEE
Confidence            22     35789999999888876  2        2366889999999874

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.50  E-value=6.2e-14  Score=106.38  Aligned_cols=109  Identities=17%  Similarity=0.144  Sum_probs=83.5

Q ss_pred             HHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           79 QLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      .+.+.++.+|||+|||+|..+..++..  ..+.|+++|+|+.+++.++.++..           ..++..+..|......
T Consensus        68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-----------~~~~~~i~~d~~~~~~  136 (227)
T d1g8aa_          68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----------RRNIVPILGDATKPEE  136 (227)
T ss_dssp             CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----------CTTEEEEECCTTCGGG
T ss_pred             ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-----------cCCceEEEEECCCccc
Confidence            345779999999999999999999875  457999999999999999988762           2346677777654322


Q ss_pred             ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ..  .....+|+|++...  +.    .....++.++.+.|||||.+++..
T Consensus       137 ~~--~~~~~vD~i~~d~~--~~----~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         137 YR--ALVPKVDVIFEDVA--QP----TQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             GT--TTCCCEEEEEECCC--ST----THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cc--ccccceEEEEEEcc--cc----chHHHHHHHHHHhcccCCeEEEEE
Confidence            11  13468898886432  22    567889999999999999998863

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=4.3e-14  Score=115.45  Aligned_cols=132  Identities=12%  Similarity=0.129  Sum_probs=89.3

Q ss_pred             hhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCee
Q 027388           67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR  145 (224)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~  145 (224)
                      .....++..++..+.+.++.+|||||||+|..+..++... ..+++|||+|+.+++.|+++....+........-...+.
T Consensus       199 El~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~  278 (406)
T d1u2za_         199 ELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE  278 (406)
T ss_dssp             CBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred             cCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce
Confidence            4455677788888888999999999999999999988664 458999999999999999887521110000000011122


Q ss_pred             E-EeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          146 L-ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       146 ~-~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      + ..++....+....  .-..+|+|+++..+ +.    +++...|.++.+.|||||.++..
T Consensus       279 ~~~~~~f~~~~~~d~--~~~~adVV~inn~~-f~----~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         279 FSLKKSFVDNNRVAE--LIPQCDVILVNNFL-FD----EDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             EEESSCSTTCHHHHH--HGGGCSEEEECCTT-CC----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             eeeeechhhcccccc--ccccceEEEEeccc-Cc----hHHHHHHHHHHHhcCCCcEEEEe
Confidence            2 3344332221000  12467889876543 33    78999999999999999998874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.46  E-value=2.1e-13  Score=102.49  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=86.9

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ..+++.+.+.++.+|||||||+|..+..++......|+++|.++.+++.|++++...+         ..|+.++++|...
T Consensus        68 a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g---------~~nv~~~~gd~~~  138 (215)
T d1jg1a_          68 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG---------VKNVHVILGDGSK  138 (215)
T ss_dssp             HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT---------CCSEEEEESCGGG
T ss_pred             HHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcC---------CceeEEEECcccc
Confidence            4456677889999999999999998887775545679999999999999999987332         3469999999865


Q ss_pred             cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ...     ...+||.|++..++..+  +.        .+.+.|++||+|++-.
T Consensus       139 g~~-----~~~pfD~Iiv~~a~~~i--p~--------~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         139 GFP-----PKAPYDVIIVTAGAPKI--PE--------PLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             CCG-----GGCCEEEEEECSBBSSC--CH--------HHHHTEEEEEEEEEEE
T ss_pred             CCc-----ccCcceeEEeecccccC--CH--------HHHHhcCCCCEEEEEE
Confidence            433     46899999999988866  22        2667899999998753

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.44  E-value=2.1e-13  Score=97.32  Aligned_cols=108  Identities=15%  Similarity=0.050  Sum_probs=83.8

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      .+++|||+|||+|.+++..+..+..+++++|.++.+++.+++++..        .+...+++++++|+......    ..
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~--------~~~~~~~~ii~~D~~~~l~~----~~   81 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIM--------TKAENRFTLLKMEAERAIDC----LT   81 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHT--------TTCGGGEEEECSCHHHHHHH----BC
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhh--------cccccchhhhcccccccccc----cc
Confidence            6889999999999999988777778999999999999999999873        34555689999998764321    36


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHH--hhccCCeEEEEEeCC
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPD  208 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~--~~lk~gG~li~~~~~  208 (224)
                      ++||+|++.....     .......+..+.  ++|++||.+++....
T Consensus        82 ~~fDiIf~DPPy~-----~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          82 GRFDLVFLDPPYA-----KETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             SCEEEEEECCSSH-----HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             cccceeEechhhc-----cchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            7899999875422     134455566554  579999999997543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=3.4e-13  Score=107.81  Aligned_cols=118  Identities=19%  Similarity=0.179  Sum_probs=89.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++.        ..++..+++++++|+.+.... ...
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~--------~ngl~~~~~~~~~d~~~~~~~-~~~  213 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAK--------LNGVEDRMKFIVGSAFEEMEK-LQK  213 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH--------HTTCGGGEEEEESCHHHHHHH-HHH
T ss_pred             cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHH--------HcCCCccceeeechhhhhhHH-HHh
Confidence            46789999999999999999887777799999999999999999987        345666789999998653211 111


Q ss_pred             CCCCeeEEEEccccccc-----cCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          162 DDAPFDICSCQFAMHYS-----WSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~-----~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ....||+|++.-....-     .....+...++..+.++|+|||+|++++..
T Consensus       214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            35789999986532110     001234567888999999999999987653

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=1.6e-12  Score=100.56  Aligned_cols=102  Identities=10%  Similarity=0.048  Sum_probs=83.8

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..++.+|||+|||+|.+++.++..+.++++++|+++.+++.+++++.        ..++..+++++++|+.++.      
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~--------~n~l~~~v~~~~~D~~~~~------  170 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIH--------LNKVEDRMSAYNMDNRDFP------  170 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHH--------HTTCTTTEEEECSCTTTCC------
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHH--------HhCCCceEEEEEcchHHhc------
Confidence            46889999999999999999887776799999999999999999987        4466677999999998775      


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..+.||.|++...-.        ...++..+.++|++||++.+.
T Consensus       171 ~~~~~D~Ii~~~p~~--------~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         171 GENIADRILMGYVVR--------THEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             CCSCEEEEEECCCSS--------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             cCCCCCEEEECCCCc--------hHHHHHHHHhhcCCCCEEEEE
Confidence            357899998764321        234677788899999998653

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=2.7e-12  Score=94.67  Aligned_cols=127  Identities=17%  Similarity=0.165  Sum_probs=94.6

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      ++.++..+.+.++..+||++||+|.++..+++. ..++++|+|.++.|++.|++++.          ....++.++++++
T Consensus        12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~----------~~~~r~~~~~~~f   81 (192)
T d1m6ya2          12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLK----------EFSDRVSLFKVSY   81 (192)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTG----------GGTTTEEEEECCG
T ss_pred             HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhc----------cccccccchhHHH
Confidence            344566666788999999999999999998875 45789999999999999999987          3356789999988


Q ss_pred             cccccccccCCCCCeeEEEEccccc--cc---cCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMH--YS---WSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~--~~---~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      .++.........++||.|+....+.  .+   -.........+....++|++||.+++.+.+.
T Consensus        82 ~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          82 READFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             GGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             hhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            7654211111357999998764321  00   0012456788999999999999998887764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.36  E-value=5.4e-12  Score=93.22  Aligned_cols=72  Identities=17%  Similarity=0.176  Sum_probs=61.1

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      .-.|++|||+|||+|.++..++..+...|++||+++.+++.|++++.              ++.++++|+.++       
T Consensus        46 dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~--------------~~~~~~~D~~~l-------  104 (197)
T d1ne2a_          46 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG--------------GVNFMVADVSEI-------  104 (197)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCGGGC-------
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc--------------cccEEEEehhhc-------
Confidence            34689999999999999888776677789999999999999999866              478999998654       


Q ss_pred             CCCCeeEEEEcccc
Q 027388          162 DDAPFDICSCQFAM  175 (224)
Q Consensus       162 ~~~~~D~i~~~~~l  175 (224)
                       .+.||+|+++-.+
T Consensus       105 -~~~fD~Vi~NPPf  117 (197)
T d1ne2a_         105 -SGKYDTWIMNPPF  117 (197)
T ss_dssp             -CCCEEEEEECCCC
T ss_pred             -CCcceEEEeCccc
Confidence             3679999998654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=1.9e-12  Score=97.81  Aligned_cols=112  Identities=20%  Similarity=0.184  Sum_probs=81.9

Q ss_pred             HHHHH--hhcCCCeEEEecCCCchhHHHHHhhc-------CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeE
Q 027388           76 VLVQL--YARRGDVVLDLACGKGGDLIKWDKAK-------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL  146 (224)
Q Consensus        76 ~~~~~--~~~~~~~iLDiGcG~G~~~~~l~~~~-------~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~  146 (224)
                      +++.+  .+.++.+|||||||+|..+..++...       ..+|+++|.++.+++.|++++......    .....++.+
T Consensus        70 ~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~----~~~~~nv~~  145 (223)
T d1r18a_          70 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS----MLDSGQLLI  145 (223)
T ss_dssp             HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH----HHHHTSEEE
T ss_pred             HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh----hcCccEEEE
Confidence            44444  46789999999999998887766431       247999999999999998876411000    001236899


Q ss_pred             EeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       147 ~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      .++|..+...     ...+||.|++..++..+  +        ..+.+.|++||++++-.
T Consensus       146 ~~~d~~~~~~-----~~~~fD~Iiv~~a~~~~--p--------~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         146 VEGDGRKGYP-----PNAPYNAIHVGAAAPDT--P--------TELINQLASGGRLIVPV  190 (223)
T ss_dssp             EESCGGGCCG-----GGCSEEEEEECSCBSSC--C--------HHHHHTEEEEEEEEEEE
T ss_pred             Eecccccccc-----cccceeeEEEEeechhc--h--------HHHHHhcCCCcEEEEEE
Confidence            9999865433     45789999999998866  2        23678999999998754

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=6.3e-13  Score=105.88  Aligned_cols=115  Identities=13%  Similarity=0.159  Sum_probs=85.5

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .++++|||++||+|.++..++ .+..+|+++|+|+.+++.|++++..        .++. +++++++|+.+.... ....
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a-~g~~~V~~vD~s~~al~~a~~n~~~--------ngl~-~~~~i~~d~~~~~~~-~~~~  212 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLA-LGFREVVAVDSSAEALRRAEENARL--------NGLG-NVRVLEANAFDLLRR-LEKE  212 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHH-HHEEEEEEEESCHHHHHHHHHHHHH--------TTCT-TEEEEESCHHHHHHH-HHHT
T ss_pred             hCCCeeeccCCCCcHHHHHHH-hcCCcEEeecchHHHHHHHHHHHHH--------cCCC-CcceeeccHHHHhhh-hHhh
Confidence            468899999999999999876 4566899999999999999999873        3443 589999998664211 0013


Q ss_pred             CCCeeEEEEcccccc-----ccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          163 DAPFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~-----~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      .++||+|++.-....     +.....+...++..+.++|+|||.|++++..
T Consensus       213 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         213 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            578999998642111     0011245667899999999999999987653

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.33  E-value=4.6e-12  Score=100.59  Aligned_cols=117  Identities=13%  Similarity=0.128  Sum_probs=87.9

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-CCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~  160 (224)
                      ..++++|||++||+|.+++.++..+...|++||+|+.+++.+++++..        +++. .+++++++|+.+... ...
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~--------n~l~~~~~~~i~~d~~~~l~-~~~  212 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA--------NHLDMANHQLVVMDVFDYFK-YAR  212 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH--------TTCCCTTEEEEESCHHHHHH-HHH
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHH--------hcccCcceEEEEccHHHHHH-HHH
Confidence            357899999999999999987766777899999999999999999873        3443 468999999865421 000


Q ss_pred             CCCCCeeEEEEcccc-----ccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          161 ADDAPFDICSCQFAM-----HYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l-----~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .....||+|++.-..     ...+....+...++..+.++|+|||+|++++.
T Consensus       213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            035689999986321     11122335678899999999999999999765

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=1.7e-11  Score=94.89  Aligned_cols=178  Identities=11%  Similarity=0.038  Sum_probs=114.3

Q ss_pred             ccchhhHHHHHHHHHHhhhccccch---------hhhccCCceehhhhHHHHHHHHH-HHhhcCCCeEEEecCCCchhHH
Q 027388           31 LEDESTKVFARKVADHYSRRTNQTL---------EEREASPIIHLKKLNNWIKSVLV-QLYARRGDVVLDLACGKGGDLI  100 (224)
Q Consensus        31 ~~~~~~~~~~~~~~~~y~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iLDiGcG~G~~~~  100 (224)
                      +.++....+++-+.++....+.+..         .-.-....+.++...+.+...+. .....+..+++|+|||+|..+.
T Consensus        47 l~~~~~~~~~~~i~rR~~~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~  126 (271)
T d1nv8a_          47 VSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGV  126 (271)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred             CCHHHHHHHHHHHHHhhCCCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhh
Confidence            3445556666666666665553221         11123334445555555444333 3334456789999999999998


Q ss_pred             HHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccc----
Q 027388          101 KWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH----  176 (224)
Q Consensus       101 ~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~----  176 (224)
                      .++.....+++++|+|+.+++.|++++.        ..++..++.+..+|+.+....    ..+.||+|+++-..-    
T Consensus       127 ~la~~~~~~v~a~Dis~~Al~~A~~Na~--------~~~~~~~~~i~~~~~~~~~~~----~~~~fDlIVsNPPYI~~~~  194 (271)
T d1nv8a_         127 SVAKFSDAIVFATDVSSKAVEIARKNAE--------RHGVSDRFFVRKGEFLEPFKE----KFASIEMILSNPPYVKSSA  194 (271)
T ss_dssp             HHHHHSSCEEEEEESCHHHHHHHHHHHH--------HTTCTTSEEEEESSTTGGGGG----GTTTCCEEEECCCCBCGGG
T ss_pred             hhhhcccceeeechhhhhHHHHHHHHHH--------HcCCCceeEEeeccccccccc----ccCcccEEEEcccccCccc
Confidence            8876666789999999999999999987        345566678888887654321    247899999984210    


Q ss_pred             cc-----cCC----------HHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhhccccc
Q 027388          177 YS-----WST----------EARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREEHFCH  223 (224)
Q Consensus       177 ~~-----~~~----------~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~~gf~~  223 (224)
                      .+     +++          ......+   +.++|+|||++++....  ...+...+.+.||..
T Consensus       195 ~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~~k  255 (271)
T d1nv8a_         195 HLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEIGEDQVEELKKIVSDTVFLK  255 (271)
T ss_dssp             SCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEECCTTCHHHHTTTSTTCEEEE
T ss_pred             ccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEECHHHHHHHHHHHHhCCEEe
Confidence            00     011          1122233   45789999999998764  356777777777743

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.31  E-value=4.1e-12  Score=99.91  Aligned_cols=129  Identities=17%  Similarity=0.131  Sum_probs=88.4

Q ss_pred             hhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-CCe
Q 027388           66 LKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPA  144 (224)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v  144 (224)
                      .+.-..|+...+..  ..++.+|||++||+|.+++.++..+ .+|++||.|+.+++.|++++..        +++. .++
T Consensus       116 qr~nr~~~~~~~~~--~~~~~rVLdlf~~tG~~sl~aa~~G-A~V~~VD~s~~al~~a~~N~~l--------n~~~~~~~  184 (309)
T d2igta1         116 QIVHWEWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAAG-AEVTHVDASKKAIGWAKENQVL--------AGLEQAPI  184 (309)
T ss_dssp             GHHHHHHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHTT-CEEEEECSCHHHHHHHHHHHHH--------HTCTTSCE
T ss_pred             hhHHHHHHHHHHhh--ccCCCeEEEecCCCcHHHHHHHhCC-CeEEEEeChHHHHHHHHHhhhh--------hcccCCcE
Confidence            34444555554433  3568899999999999999887544 5899999999999999999762        3333 358


Q ss_pred             eEEeccccccccccccCCCCCeeEEEEccccc------cccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMH------YSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       145 ~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~------~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ++++.|+.+..... ......||+|++.-.-.      ..+.-..+...++..+.++|+|||.+++.+
T Consensus       185 ~~i~~D~~~~l~~~-~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         185 RWICEDAMKFIQRE-ERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             EEECSCHHHHHHHH-HHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             EEEeCCHHHhHHHH-hhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            99999987653110 00357899999853200      001123556677888999999998755543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=2.1e-11  Score=90.72  Aligned_cols=77  Identities=17%  Similarity=0.162  Sum_probs=63.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ...+++|||+|||+|.++..++..+..+++|+|+++.+++.+++++..          ...+..++.+|+..+       
T Consensus        44 dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~----------~~~~~~~~~~d~~~~-------  106 (201)
T d1wy7a1          44 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGE----------FKGKFKVFIGDVSEF-------  106 (201)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGG----------GTTSEEEEESCGGGC-------
T ss_pred             CCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHH----------cCCCceEEECchhhh-------
Confidence            346889999999999999988766667999999999999999999772          244578888887654       


Q ss_pred             CCCCeeEEEEccccc
Q 027388          162 DDAPFDICSCQFAMH  176 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~  176 (224)
                       .+.||+|+++-...
T Consensus       107 -~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1         107 -NSRVDIVIMNPPFG  120 (201)
T ss_dssp             -CCCCSEEEECCCCS
T ss_pred             -CCcCcEEEEcCccc
Confidence             36799999987654

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.30  E-value=1.9e-11  Score=90.42  Aligned_cols=119  Identities=18%  Similarity=0.194  Sum_probs=78.6

Q ss_pred             cCCCeEEEecCCCchhHHHHH----hh-----cCCeEEEEeCChhHHHHHHHhccCCccc-----------cccc-----
Q 027388           83 RRGDVVLDLACGKGGDLIKWD----KA-----KIGYYVGIDIAEGSIEDCRTRYNGDADH-----------HQRR-----  137 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~----~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~~-----------~~~~-----  137 (224)
                      .+..+||++|||+|.-...++    +.     ..-+++|+|+|+.+++.|++..-.....           ..+.     
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            455699999999998443332    21     1126999999999999998654321110           0000     


Q ss_pred             ------ccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          138 ------KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       138 ------~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                            ..+...+.+...+......    ...++||+|+|.+++.|+  +.+....+++++.+.|+|||+|++...
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~fDvI~CRNVLiYf--~~~~~~~vl~~l~~~L~pGG~L~lG~s  172 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQY----NVPGPFDAIFCRNVMIYF--DKTTQEDILRRFVPLLKPDGLLFAGHS  172 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSC----CCCCCEEEEEECSSGGGS--CHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             ceeehHHHHHHHHHHhhhhcccccc----CCCCCccEEEeehhHHhc--CHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence                  0001113333344332211    135789999999999998  778889999999999999999998643

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=6.5e-11  Score=88.77  Aligned_cols=122  Identities=13%  Similarity=0.128  Sum_probs=87.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc-cc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-KV  159 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~  159 (224)
                      .++++|||||||+|..+..++..  ..++++++|+++.+++.|++++.        ..++..+++++.+|..+.... ..
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~--------~~gl~~~i~l~~Gd~~e~l~~l~~  126 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLN--------FAGLQDKVTILNGASQDLIPQLKK  126 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHH--------HHTCGGGEEEEESCHHHHGGGHHH
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHH--------HcCCCccceeeeccccccccchhh
Confidence            57889999999999999988764  34699999999999999999887        456677899999998764211 00


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE---eCChHHHHHHhh
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT---MPDANVIIKKLR  217 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~---~~~~~~~~~~~~  217 (224)
                      ......||+|+....-..     ......+.+..++|+|||++++.   .+......+..+
T Consensus       127 ~~~~~~~D~ifiD~~~~~-----~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr  182 (214)
T d2cl5a1         127 KYDVDTLDMVFLDHWKDR-----YLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVR  182 (214)
T ss_dssp             HSCCCCEEEEEECSCGGG-----HHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHH
T ss_pred             cccccccceeeecccccc-----cccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHh
Confidence            113478999998743221     22334567788899999998874   233344444444

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.21  E-value=2.5e-11  Score=88.79  Aligned_cols=112  Identities=14%  Similarity=0.090  Sum_probs=84.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ..+.+|||++||+|.++.+.+..+...+++||.+..+++.+++++..        .....++.++++|+...... ....
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~--------~~~~~~~~i~~~D~~~~l~~-~~~~  110 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAI--------TKEPEKFEVRKMDANRALEQ-FYEE  110 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--------HTCGGGEEEEESCHHHHHHH-HHHT
T ss_pred             cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhh--------hhcccccccccccchhhhhh-hccc
Confidence            46889999999999999998888888999999999999999999862        23445689999998754211 0003


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHH--hhccCCeEEEEEeCC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPD  208 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~--~~lk~gG~li~~~~~  208 (224)
                      ..+||+|++.-....     ......+..+.  .+|+++|++++.+..
T Consensus       111 ~~~fDlIflDPPY~~-----~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         111 KLQFDLVLLDPPYAK-----QEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             TCCEEEEEECCCGGG-----CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCcceEEechhhhh-----hHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            568999998765332     23445566664  479999999987543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=5.6e-11  Score=87.06  Aligned_cols=107  Identities=10%  Similarity=0.011  Sum_probs=82.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      -.+.+|||++||+|.++++.+..+...+++||.+..+++.+++++...        . ..++.++.+|+......    .
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~--------~-~~~~~ii~~d~~~~l~~----~  108 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL--------K-AGNARVVNSNAMSFLAQ----K  108 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT--------T-CCSEEEECSCHHHHHSS----C
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhc--------c-ccceeeeeecccccccc----c
Confidence            467899999999999999988788889999999999999999998722        2 23578889997765321    3


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHh--hccCCeEEEEEeC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMP  207 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~--~lk~gG~li~~~~  207 (224)
                      ...||+|++.-....     .....++..+.+  +|+++|++++.+.
T Consensus       109 ~~~fDlIf~DPPY~~-----~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         109 GTPHNIVFVDPPFRR-----GLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             CCCEEEEEECCSSST-----TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ccccCEEEEcCcccc-----chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            578999999765432     234455555544  6999999999754

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.6e-10  Score=84.77  Aligned_cols=145  Identities=9%  Similarity=0.123  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHH--hhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeE
Q 027388           70 NNWIKSVLVQL--YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL  146 (224)
Q Consensus        70 ~~~~~~~~~~~--~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~  146 (224)
                      ..|+..++...  ...+..++||+|||+|-.+..++.. ...+++|+|+|+.+++.|++++.        ...+..++.+
T Consensus        45 ~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~--------~n~l~~~~~~  116 (250)
T d2h00a1          45 IHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE--------QNNLSDLIKV  116 (250)
T ss_dssp             HHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH--------HTTCTTTEEE
T ss_pred             HHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHH--------HhCCCcceee
Confidence            34555544322  2234568999999999999988765 45689999999999999999987        4466777888


Q ss_pred             Eeccccccccccc-cCCCCCeeEEEEccccccccC---------------------C----------HHHHHHHHHHHHh
Q 027388          147 ICGDCYEVHLDKV-LADDAPFDICSCQFAMHYSWS---------------------T----------EARARRALANVSA  194 (224)
Q Consensus       147 ~~~d~~~~~~~~~-~~~~~~~D~i~~~~~l~~~~~---------------------~----------~~~~~~~l~~~~~  194 (224)
                      ++.+......... ....+.||+|+|+-.++.-.+                     +          ......++++...
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~  196 (250)
T d2h00a1         117 VKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQ  196 (250)
T ss_dssp             EECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHH
T ss_pred             eeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHH
Confidence            8776544322111 113568999999875442100                     0          0124445666677


Q ss_pred             hccCCeEEEEEeC---ChHHHHHHhhhcccc
Q 027388          195 LLRPGGTFIGTMP---DANVIIKKLREEHFC  222 (224)
Q Consensus       195 ~lk~gG~li~~~~---~~~~~~~~~~~~gf~  222 (224)
                      .++..|++.....   +...+...+++.||.
T Consensus       197 ~~~~~g~~t~~ig~~~~l~~i~~~L~~~g~~  227 (250)
T d2h00a1         197 LKKRLRWYSCMLGKKCSLAPLKEELRIQGVP  227 (250)
T ss_dssp             HGGGBSCEEEEESSTTSHHHHHHHHHHTTCS
T ss_pred             HhhcCcEEEEEecchhhHHHHHHHHHHcCCC
Confidence            8888888765443   446788899988874

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=4.4e-11  Score=86.66  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=72.9

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ...+.+|||+|||+|.+++.++..+ .+++++|.++.+++.+++++..        .++..++....+|......   ..
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~g-a~vv~vD~~~~a~~~~~~N~~~--------~~~~~~v~~~~~d~~~~~~---~~  106 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEG-WEAVLVEKDPEAVRLLKENVRR--------TGLGARVVALPVEVFLPEA---KA  106 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTT-CEEEEECCCHHHHHHHHHHHHH--------HTCCCEEECSCHHHHHHHH---HH
T ss_pred             ccCCCeEEEeccccchhhhhhhhcc-chhhhcccCHHHHhhhhHHHHh--------hccccceeeeehhcccccc---cc
Confidence            4578899999999999999877555 5899999999999999999872        2333334333333211000   01


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ....||+|++.-.++.  +-......++.  ..+|+|||++++..+.
T Consensus       107 ~~~~fD~If~DPPY~~--~~~~~l~~l~~--~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         107 QGERFTVAFMAPPYAM--DLAALFGELLA--SGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             TTCCEEEEEECCCTTS--CTTHHHHHHHH--HTCEEEEEEEEEEEET
T ss_pred             cCCccceeEEcccccc--CHHHHHHHHHH--cCCcCCCeEEEEEecC
Confidence            4578999998654331  11122233332  3579999999997653

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.15  E-value=1.4e-10  Score=88.65  Aligned_cols=97  Identities=18%  Similarity=0.156  Sum_probs=76.7

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ....+|||||||+|.++..+++.. .-+++.+|+.. .++   .            .....+++++.+|+.+.       
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~---~------------~~~~~ri~~~~gd~~~~-------  136 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VIE---N------------APPLSGIEHVGGDMFAS-------  136 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHT---T------------CCCCTTEEEEECCTTTC-------
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hhh---c------------cCCCCCeEEecCCcccc-------
Confidence            456899999999999999998764 34788999743 222   1            12245799999998532       


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ....|++++..++|.+  +.++...+|+++++.|+|||.|++.
T Consensus       137 -~p~~D~~~l~~vLh~~--~de~~~~iL~~~~~aL~pgg~llI~  177 (244)
T d1fp1d2         137 -VPQGDAMILKAVCHNW--SDEKCIEFLSNCHKALSPNGKVIIV  177 (244)
T ss_dssp             -CCCEEEEEEESSGGGS--CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -cccceEEEEehhhhhC--CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence             2356999999999998  7788999999999999999988875

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.7e-10  Score=86.68  Aligned_cols=109  Identities=17%  Similarity=0.162  Sum_probs=85.3

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++++|||||||+|.-+..++..  ..++++.+|.++...+.|++.+.        ..++..+++++.+|+.+......
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~--------~ag~~~~i~~~~Gda~e~l~~~~  128 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWR--------QAEAEHKIDLRLKPALETLDELL  128 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHH--------HTTCTTTEEEEESCHHHHHHHHH
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHH--------hcCccceEEEEEeehhhcchhhh
Confidence            357899999999999988888764  35699999999999999999987        45667789999999765421100


Q ss_pred             -cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 -LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 -~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ....+.||+|+...--       ......+..+.++|+|||++++.
T Consensus       129 ~~~~~~~fD~ifiD~dk-------~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         129 AAGEAGTFDVAVVDADK-------ENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             HTTCTTCEEEEEECSCS-------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcccCCccEEEEeCCH-------HHHHHHHHHHHHHhcCCcEEEEe
Confidence             1135789999986532       34567788889999999999986

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.02  E-value=4.5e-10  Score=87.25  Aligned_cols=118  Identities=16%  Similarity=0.152  Sum_probs=85.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccc-cccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH-QRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...+++||-||+|.|..+..+++....+++.||+++.+++.|++.+....... .....-..+++++.+|+.....    
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~----  145 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK----  145 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH----
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh----
Confidence            45778999999999999988877666789999999999999998875321110 0011235679999999876543    


Q ss_pred             CCCCCeeEEEEccccccccCCHHH--HHHHHHHHHhhccCCeEEEEEe
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEAR--ARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~--~~~~l~~~~~~lk~gG~li~~~  206 (224)
                       ..++||+|++...-..-  ....  -..+++.+++.|+|||+++...
T Consensus       146 -~~~~yDvIi~D~~~~~~--~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         146 -NNRGFDVIIADSTDPVG--PAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             -HCCCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -ccCCCCEEEEeCCCCCC--CcccccCHHHHHhhHhhcCCCceEEEec
Confidence             25789999975432210  1111  2579999999999999999864

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=1.6e-09  Score=86.26  Aligned_cols=142  Identities=15%  Similarity=0.115  Sum_probs=96.5

Q ss_pred             ceehhhhHHHHHHHHHHH-hhcCCCeEEEecCCCchhHHHHHhh------cCCeEEEEeCChhHHHHHHHhccCCccccc
Q 027388           63 IIHLKKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQ  135 (224)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~-~~~~~~~iLDiGcG~G~~~~~l~~~------~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~  135 (224)
                      .++++.+...+..++... ...++.+|||.|||+|.++..+...      ....++|+|+++.++..|+.++..      
T Consensus        95 ~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~------  168 (328)
T d2f8la1          95 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL------  168 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH------
T ss_pred             EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH------
Confidence            345566666666555443 3456779999999999999887542      123688999999999999887651      


Q ss_pred             ccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCC--------------HHHHHHHHHHHHhhccCCeE
Q 027388          136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST--------------EARARRALANVSALLRPGGT  201 (224)
Q Consensus       136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~--------------~~~~~~~l~~~~~~lk~gG~  201 (224)
                          ......+.++|.....      ....||+|+++-.+......              ......++..+.+.|++||+
T Consensus       169 ----~~~~~~~~~~d~~~~~------~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~  238 (328)
T d2f8la1         169 ----QRQKMTLLHQDGLANL------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGY  238 (328)
T ss_dssp             ----HTCCCEEEESCTTSCC------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEE
T ss_pred             ----hhhhhhhhcccccccc------ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCc
Confidence                1334567777765433      35789999998755332110              11234579999999999999


Q ss_pred             EEEEeCC-------hHHHHHHhhhcc
Q 027388          202 FIGTMPD-------ANVIIKKLREEH  220 (224)
Q Consensus       202 li~~~~~-------~~~~~~~~~~~g  220 (224)
                      +++.+|+       ...+++.+.+.+
T Consensus       239 ~~~I~p~~~l~~~~~~~lR~~L~~~~  264 (328)
T d2f8la1         239 LFFLVPDAMFGTSDFAKVDKFIKKNG  264 (328)
T ss_dssp             EEEEEEGGGGGSTTHHHHHHHHHHHE
T ss_pred             eEEEecCccccCchhHHHHHHHHhCC
Confidence            8877664       355666666554

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.99  E-value=1.1e-09  Score=82.60  Aligned_cols=108  Identities=12%  Similarity=0.090  Sum_probs=84.3

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc-
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV-  159 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-  159 (224)
                      .++++|||||+++|.-+..++..  ..++++.+|.++...+.|++.+.        ..++..+++++.+++.+.-.... 
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~--------~~g~~~~i~~~~g~a~~~L~~l~~  129 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIK--------KAGVDHKIDFREGPALPVLDEMIK  129 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHH--------HTTCGGGEEEEESCHHHHHHHHHH
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHH--------HhccccceeeeehHHHHHHHHHHh
Confidence            57899999999999888887754  35799999999999999999987        45667789999999865421100 


Q ss_pred             -cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 -LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 -~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ....+.||+|+...-=       .....++..+.++|+|||++++.
T Consensus       130 ~~~~~~~fD~iFiDa~k-------~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         130 DEKNHGSYDFIFVDADK-------DNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             CGGGTTCBSEEEECSCS-------TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             ccccCCceeEEEeccch-------hhhHHHHHHHHhhcCCCcEEEEc
Confidence             0024689999987532       34567888899999999999986

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.99  E-value=8.4e-10  Score=84.22  Aligned_cols=97  Identities=14%  Similarity=0.109  Sum_probs=76.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ....+|||||||+|.++..+++.. ..++++.|+.+ .++.+               ....+++++.+|+.+-       
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~---------------~~~~rv~~~~gD~f~~-------  135 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VVENL---------------SGSNNLTYVGGDMFTS-------  135 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTTC---------------CCBTTEEEEECCTTTC-------
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HHHhC---------------cccCceEEEecCcccC-------
Confidence            345789999999999999998764 35899999843 32221               2255799999998642       


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC---eEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG---GTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g---G~li~~  205 (224)
                       ...+|++++..++|++  +.++...+|+++++.|+||   |++++.
T Consensus       136 -~p~aD~~~l~~vLHdw--~d~~~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         136 -IPNADAVLLKYILHNW--TDKDCLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             -CCCCSEEEEESCGGGS--CHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             -CCCCcEEEEEeecccC--ChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence             2368999999999998  7888999999999999998   666653

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.92  E-value=1.8e-08  Score=73.12  Aligned_cols=122  Identities=15%  Similarity=0.142  Sum_probs=88.7

Q ss_pred             HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      +.++..+.+.++..++|..+|.|+++..+++. .++|+|+|.++.+++.+++...             .++.+++.+..+
T Consensus         8 ~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~~~-------------~~~~~~~~~f~~   73 (182)
T d1wg8a2           8 QEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLHL-------------PGLTVVQGNFRH   73 (182)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTCC-------------TTEEEEESCGGG
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhccc-------------cceeEeehHHHH
Confidence            44555566788999999999999999999865 5699999999999999987532             358889988776


Q ss_pred             cccccccCCCCCeeEEEEcccccc--c---cCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHY--S---WSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~--~---~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      +.........+.+|.|+....+.-  +   ..........|....+.|++||.+++.+.+.
T Consensus        74 ~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          74 LKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             HHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             HHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            542111113478999997653211  0   0011245567888999999999999887765

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.91  E-value=6.5e-09  Score=75.77  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=80.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      -.+.+|||+.||||.++++.+..+...++.||.+...++..++++...        .. .....+...|+.+.....  .
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l--------~~~~~~~~~~~~d~~~~l~~~--~  111 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTL--------KCSSEQAEVINQSSLDFLKQP--Q  111 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT--------TCCTTTEEEECSCHHHHTTSC--C
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhh--------ccccccccccccccccccccc--c
Confidence            367899999999999999999888889999999999999999997622        22 223455666654322110  0


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHh--hccCCeEEEEEeCC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPD  208 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~--~lk~gG~li~~~~~  208 (224)
                      ...+||+|++.-....     ......+..+..  +|+++|++++.++.
T Consensus       112 ~~~~fDlIFlDPPY~~-----~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         112 NQPHFDVVFLDPPFHF-----NLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             SSCCEEEEEECCCSSS-----CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             cCCcccEEEechhHhh-----hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            3457999998766542     234556666654  79999999997653

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.90  E-value=5.8e-09  Score=82.15  Aligned_cols=117  Identities=17%  Similarity=0.084  Sum_probs=82.9

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...+++||.||+|.|..+..+++. ...++++||+++..++.|++.+.....    ...-..+++++.+|+.+....   
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~----~~~~d~rv~i~~~Da~~~l~~---  147 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ----GAFDDPRAVLVIDDARAYLER---  147 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT----TGGGCTTEEEEESCHHHHHHH---
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccccc----CccCCCceEEEEchHHHHhhh---
Confidence            456789999999999999888765 356899999999999999998741000    011245789999998876432   


Q ss_pred             CCCCCeeEEEEccccccccCCH---HHHHHHHHHHHhhccCCeEEEEEe
Q 027388          161 ADDAPFDICSCQFAMHYSWSTE---ARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~---~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                       ....||+|++...=.+.....   -....+++.+++.|+|||++++..
T Consensus       148 -~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         148 -TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             -CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence             357899999654211100000   012579999999999999999853

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.88  E-value=4.9e-09  Score=79.34  Aligned_cols=89  Identities=9%  Similarity=0.111  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      .+..++......++++|||||||+|.++..++.. ..++++||+++.+++.+++++..           ..+++++++|+
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~-----------~~n~~i~~~D~   76 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVD-----------HDNFQVLNKDI   76 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTT-----------CCSEEEECCCG
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhc-----------ccchhhhhhhh
Confidence            3455566566678999999999999999999864 56899999999999999988752           34699999999


Q ss_pred             cccccccccCCCCCeeEEEEccccccc
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAMHYS  178 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~  178 (224)
                      .++++     +......|+++.- +++
T Consensus        77 l~~~~-----~~~~~~~vv~NLP-YnI   97 (235)
T d1qama_          77 LQFKF-----PKNQSYKIFGNIP-YNI   97 (235)
T ss_dssp             GGCCC-----CSSCCCEEEEECC-GGG
T ss_pred             hhccc-----cccccceeeeeeh-hhh
Confidence            98876     2333334555444 444

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.87  E-value=8.2e-10  Score=84.14  Aligned_cols=97  Identities=13%  Similarity=0.147  Sum_probs=73.3

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..++......++++|||||||+|.++..+++. ..++++||+++.+++.+++++..           ..+++++++|+.
T Consensus        18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~-----------~~n~~ii~~D~l   85 (245)
T d1yuba_          18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKL-----------NTRVTLIHQDIL   85 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTT-----------CSEEEECCSCCT
T ss_pred             HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhh-----------ccchhhhhhhhh
Confidence            444666666678899999999999999999865 46999999999999888776541           346999999999


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHH
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRAL  189 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l  189 (224)
                      ++++     +...++.|+++... ++  +.+-...++
T Consensus        86 ~~~~-----~~~~~~~vv~NLPY-~I--st~il~~~l  114 (245)
T d1yuba_          86 QFQF-----PNKQRYKIVGNIPY-HL--STQIIKKVV  114 (245)
T ss_dssp             TTTC-----CCSSEEEEEEECCS-SS--CHHHHHHHH
T ss_pred             cccc-----ccceeeeEeeeeeh-hh--hHHHHHHHh
Confidence            8876     45667777766654 44  454444444

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.86  E-value=2.6e-09  Score=81.46  Aligned_cols=96  Identities=17%  Similarity=0.143  Sum_probs=74.3

Q ss_pred             CCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ...+|||||||+|.++..+++.. ..+++++|+... ++.               .....++.+..+|+.+- .      
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~---------------~~~~~r~~~~~~d~~~~-~------  137 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IED---------------APSYPGVEHVGGDMFVS-I------  137 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTT---------------CCCCTTEEEEECCTTTC-C------
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhh---------------cccCCceEEeccccccc-C------
Confidence            35789999999999999998764 358999998663 211               12245689999998542 2      


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ...|+++...++|..  +.++...+|+++++.|+|||.+++.
T Consensus       138 -P~ad~~~l~~vlh~~--~d~~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         138 -PKADAVFMKWICHDW--SDEHCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             -CCCSCEECSSSSTTS--CHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred             -CCcceEEEEEEeecC--CHHHHHHHHHHHHHhcCCCceEEEE
Confidence             235777888899887  7789999999999999999987774

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.83  E-value=1.1e-08  Score=80.07  Aligned_cols=118  Identities=17%  Similarity=0.126  Sum_probs=83.1

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...+++||-||.|.|..+..+++.. ..+++.||+++.+++.|++.+.....     ..-..+++++.+|..+.-..   
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~-----~~~dprv~i~i~Da~~~l~~---  175 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC-----GFSHPKLDLFCGDGFEFLKN---  175 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG-----GGGCTTEEEECSCHHHHHHH---
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcc-----ccCCCCeEEEEchHHHHHHh---
Confidence            4567899999999999999988654 46899999999999999998753211     11246789999998765432   


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                       ..+.||+|++...-..-....-....+++.+++.|+|||+++....+
T Consensus       176 -~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         176 -HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             -CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             -CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence             35789999976432111001112367899999999999999997543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=1.9e-08  Score=78.30  Aligned_cols=117  Identities=15%  Similarity=0.089  Sum_probs=84.1

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...+++||-||.|.|..+..+++.. ..++++||+++.+++.|++.+....     ..--+.+++++.+|+.+.-..   
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~-----~~~~d~rv~v~~~Da~~~l~~---  158 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS-----CGFDDPRAEIVIANGAEYVRK---  158 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH-----GGGGCTTEEEEESCHHHHGGG---
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhc-----ccccCCCcEEEhhhHHHHHhc---
Confidence            3567899999999999998887654 4689999999999999999875210     011246789999998776432   


Q ss_pred             CCCCCeeEEEEccccccccCCHH--HHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEA--RARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~--~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                       ..+.||+|++...-... .+..  ....+++.+++.|+|||+++....+
T Consensus       159 -~~~~yDvIi~D~~dp~~-~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         159 -FKNEFDVIIIDSTDPTA-GQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             -CSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             -CCCCCCEEEEcCCCCCc-CchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence             35789999976432110 0000  1267999999999999999997654

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.1e-08  Score=79.46  Aligned_cols=116  Identities=19%  Similarity=0.136  Sum_probs=83.0

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+++||-||.|.|..+..+++. ...+++.||+++.+++.|++.+....     ...-+.+++++.+|+...-..    
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~-----~~~~d~rv~i~~~Da~~~l~~----  147 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA-----IGYSSSKLTLHVGDGFEFMKQ----  147 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-----GGGGCTTEEEEESCHHHHHHT----
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc-----cccCCCCceEEEccHHHHHhc----
Confidence            46789999999999999998865 46689999999999999999874210     012256799999998765432    


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ..+.||+|++...--.-....-....+++.+++.|+|||++++...
T Consensus       148 ~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  193 (285)
T d2o07a1         148 NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  193 (285)
T ss_dssp             CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence            3578999997642111000111234689999999999999998754

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.79  E-value=1.6e-08  Score=75.58  Aligned_cols=121  Identities=22%  Similarity=0.227  Sum_probs=81.2

Q ss_pred             HHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (224)
Q Consensus        76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (224)
                      ++..+...++.+|||.|||+|.++..+.+.  ....++|+|+++..+..+                  .....+++|...
T Consensus        11 m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~------------------~~~~~~~~~~~~   72 (223)
T d2ih2a1          11 MVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------------PWAEGILADFLL   72 (223)
T ss_dssp             HHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------------TTEEEEESCGGG
T ss_pred             HHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc------------------ccceeeeeehhc
Confidence            444445677889999999999998877653  345799999998543322                  234667777665


Q ss_pred             cccccccCCCCCeeEEEEccccccccC-------------------------CHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          154 VHLDKVLADDAPFDICSCQFAMHYSWS-------------------------TEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~-------------------------~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ..      ....||+|+++........                         ...-...++....+.|++||.+.+.+|+
T Consensus        73 ~~------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~  146 (223)
T d2ih2a1          73 WE------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  146 (223)
T ss_dssp             CC------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             cc------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence            44      3578999998865332100                         0001346788899999999998887653


Q ss_pred             -------hHHHHHHhhhcc
Q 027388          209 -------ANVIIKKLREEH  220 (224)
Q Consensus       209 -------~~~~~~~~~~~g  220 (224)
                             ...+++.+.+.+
T Consensus       147 ~~l~~~~~~~lR~~l~~~~  165 (223)
T d2ih2a1         147 TWLVLEDFALLREFLAREG  165 (223)
T ss_dssp             GGGTCGGGHHHHHHHHHHS
T ss_pred             eeccCcchHHHHHHHHhcC
Confidence                   346666666544

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=6.3e-08  Score=77.69  Aligned_cols=129  Identities=16%  Similarity=0.163  Sum_probs=87.1

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..+...+...++.+|||+-||.|.++..++ ....+|+|+|.++.+++.|++++..+        ++ .++.++.++..
T Consensus       201 ~~~v~~~~~~~~~~~vlDLycG~G~fsl~La-~~~~~V~gvE~~~~ai~~A~~na~~n--------~i-~n~~~~~~~~~  270 (358)
T d1uwva2         201 VARALEWLDVQPEDRVLDLFCGMGNFTLPLA-TQAASVVGVEGVPALVEKGQQNARLN--------GL-QNVTFYHENLE  270 (358)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTTTTHHHHH-TTSSEEEEEESCHHHHHHHHHHHHHT--------TC-CSEEEEECCTT
T ss_pred             HHHHHHhhccCCCceEEEecccccccchhcc-ccccEEEeccCcHHHHHHHHHhHHhc--------cc-ccceeeecchh
Confidence            3334444455678899999999999999987 45679999999999999999997733        22 25899999887


Q ss_pred             ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHh---hhccc
Q 027388          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL---REEHF  221 (224)
Q Consensus       153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~---~~~gf  221 (224)
                      +....... ....+|+|+..-.       ......++..+.+. +|.-+++++. |+..+.+.+   .+.||
T Consensus       271 ~~~~~~~~-~~~~~d~vilDPP-------R~G~~~~~~~l~~~-~~~~ivYVSC-np~TlaRDl~~l~~~gy  332 (358)
T d1uwva2         271 EDVTKQPW-AKNGFDKVLLDPA-------RAGAAGVMQQIIKL-EPIRIVYVSC-NPATLARDSEALLKAGY  332 (358)
T ss_dssp             SCCSSSGG-GTTCCSEEEECCC-------TTCCHHHHHHHHHH-CCSEEEEEES-CHHHHHHHHHHHHHTTC
T ss_pred             hhhhhhhh-hhccCceEEeCCC-------CccHHHHHHHHHHc-CCCEEEEEeC-CHHHHHHHHHHHHHCCC
Confidence            64321111 3467999987542       22233455555543 6666666664 666665543   45566

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=4e-08  Score=72.59  Aligned_cols=101  Identities=15%  Similarity=0.104  Sum_probs=79.3

Q ss_pred             CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ++.+|+|+|+|.|.-++.++-. ...+++.+|.+..-+...+......        ++ .++++++..+++..      .
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L--------~L-~nv~v~~~R~E~~~------~  129 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL--------KL-ENIEPVQSRVEEFP------S  129 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT--------TC-SSEEEEECCTTTSC------C
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc--------CC-cceeeeccchhhhc------c
Confidence            5679999999999999988764 3468999999999988888776522        22 35999999998765      3


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ..+||+|++..+.        ....++.-+...++++|.+++...
T Consensus       130 ~~~fD~V~sRA~~--------~~~~ll~~~~~~l~~~g~~~~~KG  166 (207)
T d1jsxa_         130 EPPFDGVISRAFA--------SLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             CSCEEEEECSCSS--------SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             ccccceehhhhhc--------CHHHHHHHHHHhcCCCcEEEEECC
Confidence            5689999987653        245678888999999999887643

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.77  E-value=2e-08  Score=77.66  Aligned_cols=118  Identities=15%  Similarity=0.128  Sum_probs=85.0

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      ...+++||-||.|.|..+..+++. ...+++.||+++..++.|++.+....     ...-+.+++++.+|+...-..   
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~-----~~~~d~r~~i~~~D~~~~l~~---  144 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA-----GKLDDPRVDVQVDDGFMHIAK---  144 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHH-----TTTTSTTEEEEESCSHHHHHT---
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhc-----ccccCCCeEEEechHHHHHhh---
Confidence            456789999999999999998864 45689999999999999999874210     011256789999998775432   


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                       ....||+|+....-..-....---..+++.+++.|+|||+++....+
T Consensus       145 -~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         145 -SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             -CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             -cCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence             35789999976421100000001346899999999999999987654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.73  E-value=3.2e-08  Score=76.99  Aligned_cols=118  Identities=17%  Similarity=0.159  Sum_probs=84.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ..+++||=||.|.|..+..+++. ...++++||+++..++.|++.+....     ...-..+++++.+|....-...   
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~-----~~~~~~r~~i~~~Da~~~l~~~---  150 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA-----IGYEDPRVNLVIGDGVAFLKNA---  150 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-----GGGGSTTEEEEESCHHHHHHTS---
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhh-----ccccCCCcEEEEccHHHHHhhc---
Confidence            46789999999999999998865 44689999999999999999874110     1123567899999977654210   


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      ..+.||+|+....-..-....---..+++.+++.|+|||+++....+
T Consensus       151 ~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         151 AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             cccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            24689999975421110000011356999999999999999998664

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=6.7e-07  Score=68.84  Aligned_cols=88  Identities=22%  Similarity=0.354  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (224)
Q Consensus        72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (224)
                      .+..++......+++.|||||+|+|.++..+++.. .++++||+++.+++..++.+..        .....++.++.+|+
T Consensus         9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~--------~~~~~~~~~i~~D~   79 (278)
T d1zq9a1           9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQG--------TPVASKLQVLVGDV   79 (278)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTT--------STTGGGEEEEESCT
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhh--------hccccchhhhHHHH
Confidence            34455555566788999999999999999998654 6999999999999999988762        23345689999999


Q ss_pred             cccccccccCCCCCeeEEEEcccc
Q 027388          152 YEVHLDKVLADDAPFDICSCQFAM  175 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~D~i~~~~~l  175 (224)
                      ...+.       ..++.|+++...
T Consensus        80 l~~~~-------~~~~~vV~NLPY   96 (278)
T d1zq9a1          80 LKTDL-------PFFDTCVANLPY   96 (278)
T ss_dssp             TTSCC-------CCCSEEEEECCG
T ss_pred             hhhhh-------hhhhhhhcchHH
Confidence            88765       234567766554

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.53  E-value=4.9e-07  Score=71.03  Aligned_cols=126  Identities=20%  Similarity=0.242  Sum_probs=86.4

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      +.+.++.+|||++||.|+-+..++..  ..+.++++|.++..+...++++..        .+. .++.....|...++. 
T Consensus       112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r--------~~~-~~i~~~~~d~~~~~~-  181 (313)
T d1ixka_         112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR--------LGV-LNVILFHSSSLHIGE-  181 (313)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH--------HTC-CSEEEESSCGGGGGG-
T ss_pred             ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHH--------HHh-hcccccccccccccc-
Confidence            34678899999999999988877653  456899999999999999888762        222 346667777665543 


Q ss_pred             cccCCCCCeeEEEEcc------cccccc-----CCH-------HHHHHHHHHHHhhccCCeEEEEEeC------ChHHHH
Q 027388          158 KVLADDAPFDICSCQF------AMHYSW-----STE-------ARARRALANVSALLRPGGTFIGTMP------DANVII  213 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~------~l~~~~-----~~~-------~~~~~~l~~~~~~lk~gG~li~~~~------~~~~~~  213 (224)
                          ....||.|++.-      ++....     -..       .-+..++.+..+.+||||.|+.+|.      |...+.
T Consensus       182 ----~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~  257 (313)
T d1ixka_         182 ----LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQ  257 (313)
T ss_dssp             ----GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHH
T ss_pred             ----ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHH
Confidence                367899998532      111110     011       1246688899999999999998866      344444


Q ss_pred             HHhhhc
Q 027388          214 KKLREE  219 (224)
Q Consensus       214 ~~~~~~  219 (224)
                      ..+++.
T Consensus       258 ~~L~~~  263 (313)
T d1ixka_         258 WALDNF  263 (313)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            454443

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.53  E-value=3e-07  Score=75.38  Aligned_cols=143  Identities=18%  Similarity=0.209  Sum_probs=96.4

Q ss_pred             CCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc--------------CCeEEEEeCChhHHHHHHHh
Q 027388           61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--------------IGYYVGIDIAEGSIEDCRTR  126 (224)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--------------~~~~~gvD~s~~~~~~a~~~  126 (224)
                      ..+++++.+..++.   ..+.+..+.+|+|.+||+|.++..+.+.-              ...++|+|+++.+...|+.+
T Consensus       142 G~f~TP~~Iv~~mv---~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n  218 (425)
T d2okca1         142 GQYFTPRPLIQAMV---DCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN  218 (425)
T ss_dssp             GGGCCCHHHHHHHH---HHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred             hhhccchhhhHhhh---eeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhh
Confidence            45667777755544   34445678899999999999998776420              13589999999999999887


Q ss_pred             ccCCcccccccccCC-CCeeEEeccccccccccccCCCCCeeEEEEcccccccc-------------CCHHHHHHHHHHH
Q 027388          127 YNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW-------------STEARARRALANV  192 (224)
Q Consensus       127 ~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~-------------~~~~~~~~~l~~~  192 (224)
                      +.-        ++.. ....+...|.....      ....||+|+++-.+....             ........++..+
T Consensus       219 ~~l--------~g~~~~~~~i~~~d~l~~~------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~  284 (425)
T d2okca1         219 LYL--------HGIGTDRSPIVCEDSLEKE------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHM  284 (425)
T ss_dssp             HHH--------TTCCSSCCSEEECCTTTSC------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHH
T ss_pred             hhh--------cCCccccceeecCchhhhh------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHH
Confidence            652        1222 23456677765433      357899999987553211             1112345699999


Q ss_pred             HhhccCCeEEEEEeCC--------hHHHHHHhhhcc
Q 027388          193 SALLRPGGTFIGTMPD--------ANVIIKKLREEH  220 (224)
Q Consensus       193 ~~~lk~gG~li~~~~~--------~~~~~~~~~~~g  220 (224)
                      .+.|++||.+.+.+|+        ...+++.|.+.+
T Consensus       285 ~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~  320 (425)
T d2okca1         285 MLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDF  320 (425)
T ss_dssp             HHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHE
T ss_pred             HHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHHhc
Confidence            9999999998887663        135566655544

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.50  E-value=2.1e-07  Score=70.08  Aligned_cols=105  Identities=11%  Similarity=0.049  Sum_probs=78.7

Q ss_pred             CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ...+|+|||+|.|.-++.++-. ...+++.+|.+..-+...+......        ++ .++.+++..++++.....  .
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L--------~L-~n~~i~~~R~E~~~~~~~--~  138 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL--------QL-ENTTFCHDRAETFGQRKD--V  138 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH--------TC-SSEEEEESCHHHHTTCTT--T
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh--------CC-CCcEEEeehhhhcccccc--c
Confidence            5679999999999999988753 4568999999999888877765522        22 248888888876643111  2


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      .+.||+|++..+.        .+..++.-+...+++||.+++.-.
T Consensus       139 ~~~~D~v~sRAva--------~l~~ll~~~~~~l~~~g~~i~~KG  175 (239)
T d1xdza_         139 RESYDIVTARAVA--------RLSVLSELCLPLVKKNGLFVALKA  175 (239)
T ss_dssp             TTCEEEEEEECCS--------CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             cccceEEEEhhhh--------CHHHHHHHHhhhcccCCEEEEECC
Confidence            4689999987653        356788889999999999887543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.49  E-value=4.6e-07  Score=67.99  Aligned_cols=103  Identities=20%  Similarity=0.155  Sum_probs=65.9

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      .++++|||||++.|.-+..++..     ..++++++|+..........              ...+++++++|......-
T Consensus        79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~--------------~~~~I~~i~gDs~~~~~~  144 (232)
T d2bm8a1          79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------------DMENITLHQGDCSDLTTF  144 (232)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------------GCTTEEEEECCSSCSGGG
T ss_pred             hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc--------------cccceeeeecccccHHHH
Confidence            47889999999999766554421     35689999998743322211              134699999987654321


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ... ....+|+|+.... |..    ......+ .+..+|++||++++.-
T Consensus       145 ~~l-~~~~~dlIfID~~-H~~----~~v~~~~-~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         145 EHL-REMAHPLIFIDNA-HAN----TFNIMKW-AVDHLLEEGDYFIIED  186 (232)
T ss_dssp             GGG-SSSCSSEEEEESS-CSS----HHHHHHH-HHHHTCCTTCEEEECS
T ss_pred             HHH-HhcCCCEEEEcCC-cch----HHHHHHH-HHhcccCcCCEEEEEc
Confidence            111 3456788887654 432    2222333 3668999999999863

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=5.3e-07  Score=65.06  Aligned_cols=105  Identities=20%  Similarity=0.231  Sum_probs=72.9

Q ss_pred             hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      ..++.+|||+||+.|.|+..+...  ....++++|+.+-                   .. -.++.++++|+........
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-------------------~~-i~~~~~~~~d~~~~~~~~~   79 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-------------------DP-IVGVDFLQGDFRDELVMKA   79 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-------------------CC-CTTEEEEESCTTSHHHHHH
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-------------------cc-cCCceEeecccccchhhhh
Confidence            367889999999999999987753  4568999998661                   11 2347889999875332110


Q ss_pred             ---cCCCCCeeEEEEccccccccCCHH---------HHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          160 ---LADDAPFDICSCQFAMHYSWSTEA---------RARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       160 ---~~~~~~~D~i~~~~~l~~~~~~~~---------~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                         ......+|+|++..+...-  ...         -....+.-+.++|++||.+++....
T Consensus        80 ~~~~~~~~~~DlVlSD~ap~~s--g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~  138 (180)
T d1ej0a_          80 LLERVGDSKVQVVMSDMAPNMS--GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             HHHHHTTCCEEEEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             hhhhccCcceeEEEecccchhc--ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence               1135789999998764321  111         2345677888999999999987654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=1.4e-07  Score=71.86  Aligned_cols=73  Identities=10%  Similarity=0.110  Sum_probs=59.4

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (224)
                      +..++......+++.|||||||+|.++..+++. ..++++||+++.+++..+.....           ..+++++.+|+.
T Consensus        10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~-----------~~~~~ii~~D~l   77 (252)
T d1qyra_          10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFL-----------GPKLTIYQQDAM   77 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTT-----------GGGEEEECSCGG
T ss_pred             HHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhh-----------ccchhHHhhhhh
Confidence            445666666678999999999999999999854 56899999999999999876541           346999999999


Q ss_pred             ccccc
Q 027388          153 EVHLD  157 (224)
Q Consensus       153 ~~~~~  157 (224)
                      ++++.
T Consensus        78 ~~~~~   82 (252)
T d1qyra_          78 TFNFG   82 (252)
T ss_dssp             GCCHH
T ss_pred             hhccc
Confidence            87653

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=1.6e-06  Score=67.05  Aligned_cols=126  Identities=17%  Similarity=0.179  Sum_probs=82.5

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      +...++.+|||+++|.|+-+..++.. ..+.++++|+++..+...++++...        +.. ++.....|....... 
T Consensus        98 L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~--------g~~-~~~~~~~~~~~~~~~-  167 (284)
T d1sqga2          98 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL--------GMK-ATVKQGDGRYPSQWC-  167 (284)
T ss_dssp             HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT--------TCC-CEEEECCTTCTHHHH-
T ss_pred             cCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcc--------ccc-ceeeeccccccchhc-
Confidence            45678899999999999999888764 3368999999999999999987722        222 133333333221111 


Q ss_pred             ccCCCCCeeEEEEcc------ccccc------cCC------HHHHHHHHHHHHhhccCCeEEEEEeC------ChHHHHH
Q 027388          159 VLADDAPFDICSCQF------AMHYS------WST------EARARRALANVSALLRPGGTFIGTMP------DANVIIK  214 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~------~l~~~------~~~------~~~~~~~l~~~~~~lk~gG~li~~~~------~~~~~~~  214 (224)
                         ....||.|++.-      ++..-      +..      ..-+..+|.+..+.|+|||+|+.+|.      |...+..
T Consensus       168 ---~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~  244 (284)
T d1sqga2         168 ---GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKA  244 (284)
T ss_dssp             ---TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHH
T ss_pred             ---ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHH
Confidence               346899999531      22111      000      11256789999999999999998866      3344444


Q ss_pred             Hhhh
Q 027388          215 KLRE  218 (224)
Q Consensus       215 ~~~~  218 (224)
                      .+++
T Consensus       245 ~l~~  248 (284)
T d1sqga2         245 FLQR  248 (284)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5544

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.6e-06  Score=72.89  Aligned_cols=151  Identities=17%  Similarity=0.184  Sum_probs=92.5

Q ss_pred             cCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh----c---------------CCeEEEEeCChhHH
Q 027388           60 ASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA----K---------------IGYYVGIDIAEGSI  120 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~----~---------------~~~~~gvD~s~~~~  120 (224)
                      ...+++++.+..++..   .+.+.++.+|+|.+||+|.++......    .               ...++|+|+++.+.
T Consensus       143 ~GqfyTP~~Iv~~mv~---ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~  219 (524)
T d2ar0a1         143 AGQYFTPRPLIKTIIH---LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR  219 (524)
T ss_dssp             --CCCCCHHHHHHHHH---HHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred             cchhccccchhHhhhh---cccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHH
Confidence            3456677777655544   344567789999999999999876542    0               12589999999999


Q ss_pred             HHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcccccccc----------CCHHHHHHHHH
Q 027388          121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW----------STEARARRALA  190 (224)
Q Consensus       121 ~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~----------~~~~~~~~~l~  190 (224)
                      ..|+.++.-.+..    ..+.....+...+....+..    ....||+|+++-.+..-.          .....-..++.
T Consensus       220 ~la~~nl~l~~~~----~~i~~~~~~~~~~~l~~d~~----~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~  291 (524)
T d2ar0a1         220 RLALMNCLLHDIE----GNLDHGGAIRLGNTLGSDGE----NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQ  291 (524)
T ss_dssp             HHHHHHHHTTTCC----CBGGGTBSEEESCTTSHHHH----TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHH
T ss_pred             HHHHHHHHhhccc----ccccccchhhhhhhhhhccc----ccccceeEEecCCccccccccchhhhccccccccHHHHH
Confidence            9998876521110    00111122333443322111    346899999986543110          11122346999


Q ss_pred             HHHhhccCCeEEEEEeCCh--------HHHHHHhhhccc
Q 027388          191 NVSALLRPGGTFIGTMPDA--------NVIIKKLREEHF  221 (224)
Q Consensus       191 ~~~~~lk~gG~li~~~~~~--------~~~~~~~~~~gf  221 (224)
                      .+.+.|++||++.+.+|+.        ..+++.|-+.+.
T Consensus       292 ~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~~  330 (524)
T d2ar0a1         292 HIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCH  330 (524)
T ss_dssp             HHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHEE
T ss_pred             HHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHcCC
Confidence            9999999999988877641        246666655543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=8.4e-06  Score=63.19  Aligned_cols=116  Identities=12%  Similarity=0.033  Sum_probs=76.5

Q ss_pred             HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      +...++.+|||++||.|+-+..++..  +...++++|+++..+..+++++...        ++ .++.+...|...+...
T Consensus        90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~--------g~-~~~~~~~~d~~~~~~~  160 (293)
T d2b9ea1          90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA--------GV-SCCELAEEDFLAVSPS  160 (293)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT--------TC-CSEEEEECCGGGSCTT
T ss_pred             cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc--------Cc-cceeeeehhhhhhccc
Confidence            35678899999999999988887753  5568999999999999999988732        22 3478888887765431


Q ss_pred             cccCCCCCeeEEEEcc------ccccc------cC-C-------HHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          158 KVLADDAPFDICSCQF------AMHYS------WS-T-------EARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~------~l~~~------~~-~-------~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      ..  ..+.||.|++.-      ++...      .. +       ...+..++.... .+++||.|+.+|.
T Consensus       161 ~~--~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTC  227 (293)
T d2b9ea1         161 DP--RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTC  227 (293)
T ss_dssp             CG--GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEES
T ss_pred             cc--ccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeec
Confidence            11  236799998542      11110      00 0       011233455555 4789999888766

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.16  E-value=7.9e-06  Score=65.39  Aligned_cols=115  Identities=16%  Similarity=0.039  Sum_probs=80.3

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCccccccc------ccCCCCeeEEeccccccc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR------KKFSFPARLICGDCYEVH  155 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~------~~~~~~v~~~~~d~~~~~  155 (224)
                      .++.+|||..||+|..++.++.. +..+|+.+|+|+..++.+++++..++..+...      ......+.+.+.|+..+.
T Consensus        44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            47889999999999999977653 55689999999999999999986332111000      011223566677765443


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~  209 (224)
                      ..    ....||+|...- +.       .+..++....+.++.||.|.++.-+.
T Consensus       124 ~~----~~~~fDvIDiDP-fG-------s~~pfldsAi~a~~~~Gll~vTaTD~  165 (375)
T d2dula1         124 AE----RHRYFHFIDLDP-FG-------SPMEFLDTALRSAKRRGILGVTATDG  165 (375)
T ss_dssp             HH----STTCEEEEEECC-SS-------CCHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             Hh----hcCcCCcccCCC-CC-------CcHHHHHHHHHHhccCCEEEEEecCc
Confidence            32    346799998764 22       13468888899999999999985543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.01  E-value=1.8e-05  Score=59.10  Aligned_cols=114  Identities=19%  Similarity=0.138  Sum_probs=63.7

Q ss_pred             HHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           78 VQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        78 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      +.....+..+|+|+|||.|.++..++... ...+.|+++--...+  .....       .... ...+.+...+-... .
T Consensus        60 ~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e--~P~~~-------~~~~-~ni~~~~~~~dv~~-l  128 (257)
T d2p41a1          60 ERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE--EPIPM-------STYG-WNLVRLQSGVDVFF-I  128 (257)
T ss_dssp             HTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC--CCCCC-------CSTT-GGGEEEECSCCTTT-S
T ss_pred             HhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc--CCccc-------cccc-cccccchhhhhHHh-c
Confidence            33345677899999999999999887542 345667776322100  00000       0000 11133333321111 1


Q ss_pred             ccccCCCCCeeEEEEccccccccCCH---HHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          157 DKVLADDAPFDICSCQFAMHYSWSTE---ARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       157 ~~~~~~~~~~D~i~~~~~l~~~~~~~---~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                           +...+|+|+|..+-. -....   .-...++.-+.+.|+|||.|++....
T Consensus       129 -----~~~~~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~  177 (257)
T d2p41a1         129 -----PPERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN  177 (257)
T ss_dssp             -----CCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred             -----CCCcCCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence                 467899999987532 10111   11235667778899999999988544

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=0.0001  Score=57.63  Aligned_cols=59  Identities=17%  Similarity=0.145  Sum_probs=50.0

Q ss_pred             CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (224)
                      .+.+|||||+|.|.++..++.. ...+++++|+++...+..+..+.            ..+++++++|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------------~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------------GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------------TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------------CCCcEEEeCchhhc
Confidence            4678999999999999999865 45689999999999999988766            45688999998654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.41  E-value=0.001  Score=46.48  Aligned_cols=102  Identities=16%  Similarity=0.048  Sum_probs=65.4

Q ss_pred             HHhhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      ....+++.+||=+|||. |.++.++++....+++++|.++..++.+++...              ...+ ..+.......
T Consensus        21 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga--------------~~~~-~~~~~~~~~~   85 (170)
T d1e3ja2          21 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA--------------DVTL-VVDPAKEEES   85 (170)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC--------------SEEE-ECCTTTSCHH
T ss_pred             HhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC--------------cEEE-eccccccccc
Confidence            34567889999999984 667777776666799999999999999987643              1112 1111110000


Q ss_pred             c-----ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 K-----VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~-----~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .     .......+|+|+-.-.      .    ...+....++++++|.+++.
T Consensus        86 ~~~~~~~~~~g~g~D~vid~~g------~----~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          86 SIIERIRSAIGDLPNVTIDCSG------N----EKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             HHHHHHHHHSSSCCSEEEECSC------C----HHHHHHHHHHSCTTCEEEEC
T ss_pred             hhhhhhhcccccCCceeeecCC------C----hHHHHHHHHHHhcCCceEEE
Confidence            0     0002357898874321      1    24567778899999998874

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.26  E-value=0.0029  Score=48.55  Aligned_cols=117  Identities=13%  Similarity=0.096  Sum_probs=76.6

Q ss_pred             CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP  165 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  165 (224)
                      .+|||+-||.|.+...+...++..+.++|+++.+.+..+.++.               -.++++|+.++....    ...
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~---------------~~~~~~Di~~~~~~~----~~~   61 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS---------------AKLIKGDISKISSDE----FPK   61 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC---------------SEEEESCTTTSCGGG----SCC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC---------------CCCccCChhhCCHhH----ccc
Confidence            3699999999999988766677667799999999999888865               356788988876532    357


Q ss_pred             eeEEEEccccccc--------cCCH-HHHHHHHHHHHhhccCCeEEEEEeCC---------hHHHHHHhhhccc
Q 027388          166 FDICSCQFAMHYS--------WSTE-ARARRALANVSALLRPGGTFIGTMPD---------ANVIIKKLREEHF  221 (224)
Q Consensus       166 ~D~i~~~~~l~~~--------~~~~-~~~~~~l~~~~~~lk~gG~li~~~~~---------~~~~~~~~~~~gf  221 (224)
                      +|+++....-+-+        .... ..+.-.+-++...++|.-+++=.+++         ...++..+.+.||
T Consensus        62 ~dll~~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY  135 (324)
T d1dcta_          62 CDGIIGGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGY  135 (324)
T ss_dssp             CSEEEECCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHE
T ss_pred             ccEEeecccccccccccccccccccccchHHHHHHHHHhhCCceeeccccccccccccchhhHHHHhHHhhCCC
Confidence            8999965421111        0111 12222344566677886555544442         2345566666665

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00028  Score=49.60  Aligned_cols=99  Identities=14%  Similarity=-0.007  Sum_probs=64.3

Q ss_pred             HhhcCCCeEEEecCC-CchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-cccccccc
Q 027388           80 LYARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG-~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~  157 (224)
                      ....++.+||-+|+| .|.++..+++....+++++|.++..++.+++.-.               -.++.. +-.+..  
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa---------------~~~i~~~~~~~~~--   85 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA---------------DHYIATLEEGDWG--   85 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC---------------SEEEEGGGTSCHH--
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCC---------------cEEeeccchHHHH--
Confidence            356789999999998 4667777776666799999999999999987643               122211 111111  


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..  ..+.+|+++..-....-        ..+....+.++++|++++.
T Consensus        86 ~~--~~~~~d~vi~~~~~~~~--------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          86 EK--YFDTFDLIVVCASSLTD--------IDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             HH--SCSCEEEEEECCSCSTT--------CCTTTGGGGEEEEEEEEEC
T ss_pred             Hh--hhcccceEEEEecCCcc--------chHHHHHHHhhccceEEEe
Confidence            01  34689988764322110        0134578899999998864

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=97.17  E-value=0.0023  Score=50.25  Aligned_cols=109  Identities=11%  Similarity=0.096  Sum_probs=73.0

Q ss_pred             CeEEEecCCCchhHHHHHh-------h----------cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCC--eeE
Q 027388           86 DVVLDLACGKGGDLIKWDK-------A----------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP--ARL  146 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~-------~----------~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--v~~  146 (224)
                      -+|.|+||.+|..++.+..       .          ..-.++.-|+-.+-....-+.+....       ....+  +.-
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~-------~~~~~~f~~g  125 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-------DVDGVCFING  125 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-------SCTTCEEEEE
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc-------cCCCCeEEEe
Confidence            5699999999998753221       0          11257788987777777766665211       11111  223


Q ss_pred             EeccccccccccccCCCCCeeEEEEccccccccC------------------C-----------HHHHHHHHHHHHhhcc
Q 027388          147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS------------------T-----------EARARRALANVSALLR  197 (224)
Q Consensus       147 ~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~------------------~-----------~~~~~~~l~~~~~~lk  197 (224)
                      +.+.+-.-.+     +.++.+++++..++||+..                  +           ..|...+|+.-.+-|+
T Consensus       126 vpGSFY~rLf-----P~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv  200 (359)
T d1m6ex_         126 VPGSFYGRLF-----PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV  200 (359)
T ss_dssp             EESCSSSCCS-----CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC
T ss_pred             cCCchhhhcC-----CCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4445443333     7899999999999999721                  0           2367789999999999


Q ss_pred             CCeEEEEEe
Q 027388          198 PGGTFIGTM  206 (224)
Q Consensus       198 ~gG~li~~~  206 (224)
                      |||.+++..
T Consensus       201 ~GG~mvl~~  209 (359)
T d1m6ex_         201 PGGRMVLTI  209 (359)
T ss_dssp             TTCEEEEEE
T ss_pred             CCcEEEEEE
Confidence            999999863

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.13  E-value=0.00036  Score=49.43  Aligned_cols=102  Identities=15%  Similarity=0.123  Sum_probs=65.5

Q ss_pred             HHHhhcCCCeEEEecCCC-chhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        78 ~~~~~~~~~~iLDiGcG~-G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      .....+++.+||=+|||. |..+.++++... .+++++|.++..++.+++.-.               ..++...-.+..
T Consensus        21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa---------------~~~i~~~~~~~~   85 (174)
T d1jqba2          21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA---------------TDILNYKNGHIE   85 (174)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC---------------SEEECGGGSCHH
T ss_pred             HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc---------------cccccccchhHH
Confidence            334567889999999987 777888876544 479999999999999987643               122211111110


Q ss_pred             --cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 --LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 --~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ..... ....+|+|+-.-..          ...+....+.++|+|.+++.
T Consensus        86 ~~v~~~t-~g~G~D~vid~~g~----------~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          86 DQVMKLT-NGKGVDRVIMAGGG----------SETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             HHHHHHT-TTSCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHh-hccCcceEEEccCC----------HHHHHHHHHHHhcCCEEEEE
Confidence              00000 23569998754321          13456778999999998874

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.09  E-value=0.0025  Score=49.29  Aligned_cols=119  Identities=15%  Similarity=0.157  Sum_probs=78.5

Q ss_pred             CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      .+.+|||+-||-|.+...+...+...+.++|+++.+++..+.++..                ..++|+.++...    ..
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~----------------~~~~Di~~~~~~----~~   69 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE----------------KPEGDITQVNEK----TI   69 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC----------------CCBSCGGGSCGG----GS
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC----------------CCcCchhcCchh----hc
Confidence            5789999999999999988766766677999999999999888751                125777766543    23


Q ss_pred             CCeeEEEEccccccc---------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC---------hHHHHHHhhhcccc
Q 027388          164 APFDICSCQFAMHYS---------WSTEARARRALANVSALLRPGGTFIGTMPD---------ANVIIKKLREEHFC  222 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~---------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---------~~~~~~~~~~~gf~  222 (224)
                      ..+|+++....-+-+         .+....+...+-++.+.++|.-+++=.+++         ...+...|++.||.
T Consensus        70 ~~~Dll~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~  146 (327)
T d2c7pa1          70 PDHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYS  146 (327)
T ss_dssp             CCCSEEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBC
T ss_pred             ceeeeeecccccchhhhhhhhcCCcccchhHHHHHHHHHhccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCc
Confidence            578999865421111         111112333445566677886554434443         35667788888874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00062  Score=47.82  Aligned_cols=102  Identities=13%  Similarity=-0.033  Sum_probs=63.1

Q ss_pred             HHhhcCCCeEEEecCCC-chhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388           79 QLYARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~-G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (224)
                      ...+.++.+||=+|||. |.++..++.... .+++++|.++..++.|++.-.               -.++..+-.....
T Consensus        21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga---------------~~~~~~~~~~~~~   85 (171)
T d1pl8a2          21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA---------------DLVLQISKESPQE   85 (171)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC---------------SEEEECSSCCHHH
T ss_pred             HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCC---------------ccccccccccccc
Confidence            34567889999999987 445555555444 479999999999999987633               1111111111000


Q ss_pred             c-c--ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          157 D-K--VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       157 ~-~--~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      . .  .......+|+|+-.-.-          ...+....+.+++||++++.
T Consensus        86 ~~~~~~~~~g~g~Dvvid~~G~----------~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          86 IARKVEGQLGCKPEVTIECTGA----------EASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             HHHHHHHHHTSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             ccccccccCCCCceEEEeccCC----------chhHHHHHHHhcCCCEEEEE
Confidence            0 0  00013578998754321          24677888999999998874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.03  E-value=0.0011  Score=46.14  Aligned_cols=50  Identities=26%  Similarity=0.207  Sum_probs=38.9

Q ss_pred             HHhhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388           79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ....+++.+||=+|+|. |..+..+++....+++++|.++..++.+++.-.
T Consensus        22 ~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga   72 (166)
T d1llua2          22 QTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA   72 (166)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred             HhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc
Confidence            34567889999999976 556666666666799999999999999987643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.02  E-value=0.0018  Score=45.58  Aligned_cols=101  Identities=13%  Similarity=0.057  Sum_probs=62.8

Q ss_pred             HhhcCCCeEEEecCCC-chhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           80 LYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~-G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      ....++.+||=+|||. |..+..+++. +...++.+|.++..++.+++.-.               ..++..+-.+....
T Consensus        24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga---------------~~~i~~~~~~~~~~   88 (174)
T d1f8fa2          24 LKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA---------------THVINSKTQDPVAA   88 (174)
T ss_dssp             TCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC---------------SEEEETTTSCHHHH
T ss_pred             hCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC---------------eEEEeCCCcCHHHH
Confidence            3567889999999976 3345555544 45577899999999999987633               22332221111100


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ......+.+|+|+-.-..          ...+....++++++|.+++.
T Consensus        89 i~~~t~gg~D~vid~~G~----------~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          89 IKEITDGGVNFALESTGS----------PEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             HHHHTTSCEEEEEECSCC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHcCCCCcEEEEcCCc----------HHHHHHHHhcccCceEEEEE
Confidence            000024589999843211          24567788999999998874

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.00  E-value=0.00023  Score=51.49  Aligned_cols=109  Identities=11%  Similarity=0.019  Sum_probs=67.4

Q ss_pred             HHhhcCCCeEEEecCCC-chhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe---ccccc
Q 027388           79 QLYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC---GDCYE  153 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~-G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~---~d~~~  153 (224)
                      ....+++.+||-+|||. |..+..+++. ...+++++|.++..++.|++.-.               ..++.   .|+.+
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga---------------~~~~~~~~~~~~~   84 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF---------------EIADLSLDTPLHE   84 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC---------------EEEETTSSSCHHH
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc---------------cEEEeCCCcCHHH
Confidence            34568899999999998 5466666654 55689999999999999987643               11111   11111


Q ss_pred             cccccccCCCCCeeEEEEcccc------ccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          154 VHLDKVLADDAPFDICSCQFAM------HYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       154 ~~~~~~~~~~~~~D~i~~~~~l------~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .-.. .. ....+|+++-.-..      ++.. ........+..+.+.++|||.+++.
T Consensus        85 ~i~~-~t-~g~g~D~vid~vG~~~~~~~~~~~-~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          85 QIAA-LL-GEPEVDCAVDAVGFEARGHGHEGA-KHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             HHHH-HH-SSSCEEEEEECCCTTCBCSSTTGG-GSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHH-Hh-CCCCcEEEEECccccccCCcccce-eecCcHHHHHHHHHHHhcCCEEEEe
Confidence            0000 00 24679999843211      1100 0011245789999999999998865

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.96  E-value=0.00058  Score=51.05  Aligned_cols=86  Identities=9%  Similarity=-0.063  Sum_probs=57.8

Q ss_pred             CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCC
Q 027388           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP  165 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  165 (224)
                      .+|||+-||.|+.+..++..+ ++|+++|-++......+..+......+........+++++++|..++...    ...+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G-~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~----~~~~  164 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD----ITPR  164 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT----CSSC
T ss_pred             CEEEECCCcccHHHHHHHhCC-CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc----cCCC
Confidence            489999999999999988554 69999999998766665544310000000011233689999997665431    2467


Q ss_pred             eeEEEEccccc
Q 027388          166 FDICSCQFAMH  176 (224)
Q Consensus       166 ~D~i~~~~~l~  176 (224)
                      ||+|+..-.+.
T Consensus       165 ~DvIYlDPMFp  175 (250)
T d2oyra1         165 PQVVYLDPMFP  175 (250)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCCCc
Confidence            99999876653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.92  E-value=0.00083  Score=47.66  Aligned_cols=98  Identities=16%  Similarity=0.054  Sum_probs=62.0

Q ss_pred             hcCCCeEEEecCCC-chhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe---ccccccc-
Q 027388           82 ARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC---GDCYEVH-  155 (224)
Q Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~---~d~~~~~-  155 (224)
                      ..++.+||=+|+|. |.++..+++... .+|+++|.++..++.+++.-.               -.++.   .+..+.. 
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~~~~~~   90 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA---------------DLTLNRRETSVEERRK   90 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC---------------SEEEETTTSCHHHHHH
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccc---------------eEEEeccccchHHHHH
Confidence            46789999999975 667777776644 479999999999999976533               11111   1111100 


Q ss_pred             -cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 -~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       .... .....+|+|+-.-.-          ...+....+.+++||++++.
T Consensus        91 ~i~~~-~~~~g~Dvvid~vG~----------~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          91 AIMDI-THGRGADFILEATGD----------SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             HHHHH-TTTSCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHh-hCCCCceEEeecCCc----------hhHHHHHHHHhcCCCEEEEE
Confidence             0000 024579998844211          12467788999999998754

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.85  E-value=0.0014  Score=50.26  Aligned_cols=54  Identities=9%  Similarity=0.182  Sum_probs=43.6

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      +++++. ....++..|||.-||+|..+.... ....+++|+|++++.++.|++|+.
T Consensus       240 ~~rlI~-~~s~~gdiVlDpF~GSGTT~~AA~-~lgR~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         240 PEFFIR-MLTEPDDLVVDIFGGSNTTGLVAE-RESRKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             HHHHHH-HHCCTTCEEEETTCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHGGGS
T ss_pred             HHHhhh-hcccCCCEEEecCCCCcHHHHHHH-HcCCcEEEEeCCHHHHHHHHHHHH
Confidence            343443 346788999999999998777654 556799999999999999999987

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0045  Score=47.91  Aligned_cols=122  Identities=16%  Similarity=0.198  Sum_probs=73.1

Q ss_pred             CCeEEEecCCCchhHHHHHhhcCC--eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           85 GDVVLDLACGKGGDLIKWDKAKIG--YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~--~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      +.+|+|+.||.|.+...+...+..  -+.++|+.+.+++..+.++.              ...+++.|+.++.....  +
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~--------------~~~~~~~di~~~~~~~~--~   65 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP--------------HTQLLAKTIEGITLEEF--D   65 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------------TSCEECSCGGGCCHHHH--H
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC--------------CCCcccCchhhCCHhHc--C
Confidence            568999999999988777555542  36699999999999988865              24567778776654322  1


Q ss_pred             CCCeeEEEEcccccccc------CCHHHHHHHHHHHHhh---c--cCCeEEEEEeCC------hHHHHHHhhhcccc
Q 027388          163 DAPFDICSCQFAMHYSW------STEARARRALANVSAL---L--RPGGTFIGTMPD------ANVIIKKLREEHFC  222 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~------~~~~~~~~~l~~~~~~---l--k~gG~li~~~~~------~~~~~~~~~~~gf~  222 (224)
                      ...+|+++....-..+.      ...+....++-++.++   +  +|.-+++=.+++      .+.++..|++.||.
T Consensus        66 ~~~~Dll~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk~~i~ENV~~l~~~~~~~~i~~~l~~~GY~  142 (343)
T d1g55a_          66 RLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQ  142 (343)
T ss_dssp             HHCCSEEEECCC------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEE
T ss_pred             CCCccEEEeecccccccccccccccccccccccchhhhhHhhhcCCCceeeeeccCCcccchhhHHHHhhhhccccc
Confidence            24789998654322210      0011222333444443   3  465433333443      46778888888864

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.73  E-value=0.0019  Score=47.96  Aligned_cols=47  Identities=21%  Similarity=0.263  Sum_probs=40.3

Q ss_pred             hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ...++..|||.-||+|..+.... ....+.+|+|+++..++.|++|+.
T Consensus       209 ~s~~gd~VlDpF~GSGTT~~aa~-~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         209 SSNPNDLVLDCFMGSGTTAIVAK-KLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HCCTTCEEEESSCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             hCCCCCEEEECCCCchHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHc
Confidence            35788999999999998777654 566799999999999999999875

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=96.70  E-value=0.026  Score=43.02  Aligned_cols=117  Identities=11%  Similarity=-0.038  Sum_probs=74.9

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc---
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV---  159 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---  159 (224)
                      .....|+.+|||--.-...+.......++=||. +.+++.-++.+...+      .....+..++..|+...-...+   
T Consensus        88 ~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~------~~~~~~~~~v~~Dl~~~~~~~L~~~  160 (297)
T d2uyoa1          88 DGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHG------VTPTADRREVPIDLRQDWPPALRSA  160 (297)
T ss_dssp             TTCCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTT------CCCSSEEEEEECCTTSCHHHHHHHT
T ss_pred             hCCCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcC------CCCCceEEEecccccchHHHHHHhc
Confidence            345678889999876655542123346777774 556666666654211      1123445677777764211111   


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~  208 (224)
                      .+....--++++-+++.|+  +.+...++++.+.....||+.|++...+
T Consensus       161 g~d~~~ptl~i~EGvl~YL--~~~~~~~ll~~i~~~~~~GS~l~~d~~~  207 (297)
T d2uyoa1         161 GFDPSARTAWLAEGLLMYL--PATAQDGLFTEIGGLSAVGSRIAVETSP  207 (297)
T ss_dssp             TCCTTSCEEEEECSCGGGS--CHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCCCCCCEEEEEccccccC--CHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            1123455667777788888  7889999999999999999999997543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.69  E-value=0.004  Score=43.49  Aligned_cols=99  Identities=13%  Similarity=0.060  Sum_probs=62.3

Q ss_pred             hcCCCeEEEecCCCch-hHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388           82 ARRGDVVLDLACGKGG-DLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (224)
Q Consensus        82 ~~~~~~iLDiGcG~G~-~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (224)
                      .+++.+||=+|+|... .+..+++. +...++++|.++..++.+++...               ..++..+-........
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga---------------~~~i~~~~~~~~~~~~   94 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA---------------DHVVDARRDPVKQVME   94 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC---------------SEEEETTSCHHHHHHH
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc---------------ceeecCcccHHHHHHH
Confidence            4678899999998744 44555544 55688999999999999987644               1222221111100000


Q ss_pred             cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ......+|+|+-.-.-          ...+....+.+++||.+++.
T Consensus        95 ~~~~~g~d~vid~~g~----------~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2          95 LTRGRGVNVAMDFVGS----------QATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             HTTTCCEEEEEESSCC----------HHHHHHGGGGEEEEEEEEEC
T ss_pred             hhCCCCceEEEEecCc----------chHHHHHHHHHhCCCEEEEE
Confidence            0024579998854321          23567788999999998874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0056  Score=42.56  Aligned_cols=98  Identities=20%  Similarity=0.149  Sum_probs=64.1

Q ss_pred             HHhhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      ....+++.+||=+|||. |.++.++++....+++++|.++...+.+++.-.               ..++...  +....
T Consensus        25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa---------------d~~i~~~--~~~~~   87 (168)
T d1uufa2          25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA---------------DEVVNSR--NADEM   87 (168)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC---------------SEEEETT--CHHHH
T ss_pred             HhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC---------------cEEEECc--hhhHH
Confidence            34567899999999976 667777777666788899999999988876643               1222211  11110


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .  ...+.+|+++-.-.-.          ..+....+.++++|.+++.
T Consensus        88 ~--~~~~~~D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          88 A--AHLKSFDFILNTVAAP----------HNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             H--TTTTCEEEEEECCSSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             H--HhcCCCceeeeeeecc----------hhHHHHHHHHhcCCEEEEe
Confidence            0  0346899988543211          1345677899999988874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0014  Score=46.04  Aligned_cols=100  Identities=17%  Similarity=0.039  Sum_probs=63.5

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      .++++.+||=.|+  |.|..+.++++....++++++-+++..+.+++.-.            ..-+.+...|+.+.-...
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga------------~~vi~~~~~~~~~~i~~~   92 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA------------HEVFNHREVNYIDKIKKY   92 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC------------SEEEETTSTTHHHHHHHH
T ss_pred             CCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCc------------ccccccccccHHHHhhhh
Confidence            4568899999996  34667778877777799999989988888876533            110111111111100000


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                        .....+|+|+..-.           ...+....+.|+++|.++..
T Consensus        93 --t~~~g~d~v~d~~g-----------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          93 --VGEKGIDIIIEMLA-----------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             --HCTTCEEEEEESCH-----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             --hccCCceEEeeccc-----------HHHHHHHHhccCCCCEEEEE
Confidence              03567999986421           13567788999999998863

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.56  E-value=0.0027  Score=47.26  Aligned_cols=115  Identities=12%  Similarity=0.089  Sum_probs=75.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhhc-----------------------------------------CCeEEEEeCChhHHH
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKAK-----------------------------------------IGYYVGIDIAEGSIE  121 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-----------------------------------------~~~~~gvD~s~~~~~  121 (224)
                      ..+..++|.-||+|.+.++.+...                                         ...++|.|++..+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            445679999999999988654310                                         013567888888888


Q ss_pred             HHHH---hccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccC-----CHHHHHHHHHHHH
Q 027388          122 DCRT---RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS-----TEARARRALANVS  193 (224)
Q Consensus       122 ~a~~---~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~-----~~~~~~~~l~~~~  193 (224)
                      .|++   ++.        ..++...+.+.++|+.+.............++|+++--...-+.     .......+...+.
T Consensus       129 ~A~~~r~n~~--------~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~  200 (249)
T d1o9ga_         129 AARRLRERLT--------AEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLA  200 (249)
T ss_dssp             HHHHHHHHHH--------HTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--------HcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHH
Confidence            7743   333        45677778999999765432111113467799999865443331     3356778888899


Q ss_pred             hhccCCeEEEEE
Q 027388          194 ALLRPGGTFIGT  205 (224)
Q Consensus       194 ~~lk~gG~li~~  205 (224)
                      +.+....+++++
T Consensus       201 ~~~p~~s~~~it  212 (249)
T d1o9ga_         201 SALPAHAVIAVT  212 (249)
T ss_dssp             HHSCTTCEEEEE
T ss_pred             ccCCCCcEEEEe
Confidence            989766666665

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.56  E-value=0.0045  Score=42.88  Aligned_cols=48  Identities=23%  Similarity=0.219  Sum_probs=37.1

Q ss_pred             HHhhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHh
Q 027388           79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTR  126 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~  126 (224)
                      .....++.+||=.|+|+ |..+..+++....+++++|.++..++.+++.
T Consensus        22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          22 VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             HHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             HhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence            34567889999999977 4455555555667899999999999999775

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.31  E-value=0.0045  Score=46.42  Aligned_cols=54  Identities=19%  Similarity=0.114  Sum_probs=43.4

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      +++++.. ...++..|||.-||+|..+.... ....+++|+|+++..++.|++|+.
T Consensus       197 ~~~~I~~-~s~~gdiVLDpF~GSGTT~~Aa~-~lgR~~ig~El~~~y~~~a~~Ri~  250 (279)
T d1eg2a_         197 IERLVRA-LSHPGSTVLDFFAGSGVTARVAI-QEGRNSICTDAAPVFKEYYQKQLT  250 (279)
T ss_dssp             HHHHHHH-HSCTTCEEEETTCTTCHHHHHHH-HHTCEEEEEESSTHHHHHHHHHHH
T ss_pred             HHHHHHh-hcCCCCEEEecCCCCcHHHHHHH-HhCCeEEEEeCCHHHHHHHHHHHH
Confidence            3434333 45789999999999998877654 455699999999999999999986

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.28  E-value=0.0042  Score=43.65  Aligned_cols=100  Identities=12%  Similarity=0.018  Sum_probs=64.3

Q ss_pred             hhcCCCeEEEecCCC-chhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc-
Q 027388           81 YARRGDVVLDLACGK-GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-  157 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-  157 (224)
                      .+.++.+||=+|||. |.++..+++.. ...++.+|.++..++.+++.-.               ..++...-.+.... 
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga---------------~~~i~~~~~~~~~~~   89 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA---------------TDCLNPRELDKPVQD   89 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------------SEEECGGGCSSCHHH
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC---------------CcccCCccchhhhhh
Confidence            457889999999988 77777777654 4578899999999999988643               11221111110000 


Q ss_pred             -cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC-eEEEEE
Q 027388          158 -KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (224)
Q Consensus       158 -~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g-G~li~~  205 (224)
                       ........+|+++-.-.          -...+....+.+++| |.+++.
T Consensus        90 ~~~~~~~~G~d~vie~~G----------~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2          90 VITELTAGGVDYSLDCAG----------TAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             HHHHHHTSCBSEEEESSC----------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             hHhhhhcCCCcEEEEecc----------cchHHHHHHHHhhcCCeEEEec
Confidence             00002468999974321          124678888999996 888764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.07  E-value=0.08  Score=36.26  Aligned_cols=91  Identities=20%  Similarity=0.089  Sum_probs=57.8

Q ss_pred             eEEEecCCC-ch-hHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           87 VVLDLACGK-GG-DLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        87 ~iLDiGcG~-G~-~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      +|+=||||. |. ++..+.+.+ ..+++++|.++..++.+++.-.               +.....+....       ..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~---------------~~~~~~~~~~~-------~~   60 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI---------------IDEGTTSIAKV-------ED   60 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS---------------CSEEESCGGGG-------GG
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc---------------chhhhhhhhhh-------hc
Confidence            577789875 32 333443333 3479999999999999987633               22222222211       12


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~  206 (224)
                      ...|+|+..-       +......++.++...++++..++-..
T Consensus        61 ~~~dlIila~-------p~~~~~~vl~~l~~~~~~~~ii~d~~   96 (171)
T d2g5ca2          61 FSPDFVMLSS-------PVRTFREIAKKLSYILSEDATVTDQG   96 (171)
T ss_dssp             TCCSEEEECS-------CHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             cccccccccC-------Cchhhhhhhhhhhccccccccccccc
Confidence            4678888654       34667888999999999887666443

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.06  E-value=0.012  Score=40.80  Aligned_cols=102  Identities=14%  Similarity=0.175  Sum_probs=63.3

Q ss_pred             HHhhcCCCeEEEecCC--CchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388           79 QLYARRGDVVLDLACG--KGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (224)
Q Consensus        79 ~~~~~~~~~iLDiGcG--~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (224)
                      .....++.+||=+||+  .|.++..++.. +...++++|.++..++.+++.-.               -.++..+-.+..
T Consensus        22 ~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga---------------~~~i~~~~~~~~   86 (170)
T d1jvba2          22 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA---------------DYVINASMQDPL   86 (170)
T ss_dssp             HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC---------------SEEEETTTSCHH
T ss_pred             HhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC---------------ceeeccCCcCHH
Confidence            3456788999999974  34455555554 55689999999999999987633               122222211110


Q ss_pred             cc-cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 LD-KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 ~~-~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .. ......+.||+|+....-          ...+....+.++|||.+++.
T Consensus        87 ~~~~~~~~~~~~d~vid~~g~----------~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          87 AEIRRITESKGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             HHHHHHTTTSCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEEC
T ss_pred             HHHHHHhhcccchhhhccccc----------chHHHhhhhhcccCCEEEEe
Confidence            00 000024679999865321          23556678999999998864

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.02  E-value=0.025  Score=44.41  Aligned_cols=56  Identities=13%  Similarity=-0.009  Sum_probs=39.5

Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--------cCCeEEEEeCChhHHHHHHHhcc
Q 027388           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------KIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--------~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      +..+...+.......|+|+|+|+|.++..++..        ....++.+|.|+...+.-++.+.
T Consensus        68 ~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          68 SASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             HHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             HHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            333333333334568999999999998876542        23368999999998888777766

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.75  E-value=0.097  Score=34.30  Aligned_cols=108  Identities=13%  Similarity=0.049  Sum_probs=64.4

Q ss_pred             eEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388           87 VVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (224)
Q Consensus        87 ~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (224)
                      +|+=+|+  |.++..+++   .....|+.+|.+++.++.+...+.               +.++++|..+...-... ..
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~---------------~~vi~Gd~~~~~~l~~~-~i   63 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID---------------ALVINGDCTKIKTLEDA-GI   63 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS---------------SEEEESCTTSHHHHHHT-TT
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhh---------------hhhccCcccchhhhhhc-Ch
Confidence            4555555  666666554   345689999999999988766543               67889998764431111 34


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhccc
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHF  221 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~gf  221 (224)
                      ..+|.+++.-.       .++...++..+.+.+.+..++ ....+ ....+.+++.|.
T Consensus        64 ~~a~~vv~~t~-------~d~~N~~~~~~~k~~~~~~iI-~~~~~-~~~~~~l~~~G~  112 (132)
T d1lssa_          64 EDADMYIAVTG-------KEEVNLMSSLLAKSYGINKTI-ARISE-IEYKDVFERLGV  112 (132)
T ss_dssp             TTCSEEEECCS-------CHHHHHHHHHHHHHTTCCCEE-EECSS-TTHHHHHHHTTC
T ss_pred             hhhhhhcccCC-------cHHHHHHHHHHHHHcCCceEE-EEecC-HHHHHHHHHCCC
Confidence            67888887421       133344445556667776443 33333 334556666663

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.01  Score=41.45  Aligned_cols=97  Identities=12%  Similarity=0.044  Sum_probs=64.0

Q ss_pred             hhcCCCeEEEecCCC--chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe---ccccccc
Q 027388           81 YARRGDVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC---GDCYEVH  155 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~--G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~---~d~~~~~  155 (224)
                      ..+++.+||=.|+|+  |.++.++++....++++++.|+...+.+++.-.               -.++.   .|+.+.-
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa---------------~~vi~~~~~d~~~~v   89 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA---------------WQVINYREEDLVERL   89 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC---------------SEEEETTTSCHHHHH
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC---------------eEEEECCCCCHHHHH
Confidence            356788998887664  667888887777899999999999999987643               12221   1211100


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      . ... ....+|+|+..-.-.           .+......++++|.+++.
T Consensus        90 ~-~~t-~g~g~d~v~d~~g~~-----------~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          90 K-EIT-GGKKVRVVYDSVGRD-----------TWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             H-HHT-TTCCEEEEEECSCGG-----------GHHHHHHTEEEEEEEEEC
T ss_pred             H-HHh-CCCCeEEEEeCccHH-----------HHHHHHHHHhcCCeeeec
Confidence            0 000 356899988654321           346788899999987763

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.63  E-value=0.035  Score=38.60  Aligned_cols=48  Identities=15%  Similarity=0.079  Sum_probs=37.0

Q ss_pred             hhcCCCeEEEecCCCch-hHHHHHhh-cCCeEEEEeCChhHHHHHHHhcc
Q 027388           81 YARRGDVVLDLACGKGG-DLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~-~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ..+++.+||=+|||... .+..+++. +..+++++|.++..++.+++.-.
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa   73 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA   73 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC
Confidence            46789999999998744 44445443 55689999999999999987644

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.62  E-value=0.15  Score=34.65  Aligned_cols=87  Identities=11%  Similarity=-0.024  Sum_probs=54.7

Q ss_pred             eEEEecCCC--chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           87 VVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        87 ~iLDiGcG~--G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      +|.=||+|.  +.++..+. ....+|+++|.++..++.+++.-.               +.....+..         ...
T Consensus         2 kI~iIG~G~mG~~lA~~l~-~~g~~V~~~d~~~~~~~~a~~~~~---------------~~~~~~~~~---------~~~   56 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLR-RRGHYLIGVSRQQSTCEKAVERQL---------------VDEAGQDLS---------LLQ   56 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHTTS---------------CSEEESCGG---------GGT
T ss_pred             EEEEEeecHHHHHHHHHHH-HCCCEEEEEECCchHHHHHHHhhc---------------cceeeeecc---------ccc
Confidence            456677763  33444443 345589999999988888776422               111111211         135


Q ss_pred             CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..|+|+..-       +......+++++...++++.+++-.
T Consensus        57 ~~DiIilav-------p~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          57 TAKIIFLCT-------PIQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             TCSEEEECS-------CHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             ccccccccC-------cHhhhhhhhhhhhhhcccccceeec
Confidence            789888543       3466788999999998888876544

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.48  E-value=0.014  Score=40.78  Aligned_cols=48  Identities=19%  Similarity=0.239  Sum_probs=37.5

Q ss_pred             hhcCCCeEEEecCCCch-hHHHHHhh-cCCeEEEEeCChhHHHHHHHhcc
Q 027388           81 YARRGDVVLDLACGKGG-DLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~-~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ..+++.+||=+|||... ++..+++. +..+|+++|.+++.++.|++.-.
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA   75 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA   75 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence            46788999999998643 44455544 44689999999999999998865

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.44  E-value=0.0026  Score=44.32  Aligned_cols=98  Identities=15%  Similarity=0.121  Sum_probs=66.4

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      ++.+|+=||+|. |..+...+......|+.+|.+...++..+..+..             ++.+...+-..+..     .
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-------------~~~~~~~~~~~l~~-----~   92 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-------------RVELLYSNSAEIET-----A   92 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-------------GSEEEECCHHHHHH-----H
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-------------cceeehhhhhhHHH-----h
Confidence            578999999998 5566666666778999999999999888777541             24444444332221     1


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li  203 (224)
                      ...+|+|+..-.+-    ....+.-+-+++.+.+|||.+++
T Consensus        93 ~~~aDivI~aalip----G~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1          93 VAEADLLIGAVLVP----GRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             HHTCSEEEECCCCT----TSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             hccCcEEEEeeecC----CcccCeeecHHHHhhcCCCcEEE
Confidence            35789999764321    12223334567889999988877

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.24  E-value=0.036  Score=38.74  Aligned_cols=98  Identities=13%  Similarity=-0.048  Sum_probs=62.8

Q ss_pred             hhcCCCeEEEecCC--CchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388           81 YARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (224)
Q Consensus        81 ~~~~~~~iLDiGcG--~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (224)
                      ...++.+||=-|++  -|.++.++++....+++++.-|++..+.+++.-..            ..+.+ ..+..+. .. 
T Consensus        28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~------------~vi~~-~~~~~~~-~~-   92 (176)
T d1xa0a2          28 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK------------EVLAR-EDVMAER-IR-   92 (176)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS------------EEEEC-C----------
T ss_pred             CCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc------------eeeec-chhHHHH-HH-
Confidence            34567788887764  46688888877888999999999999999876441            11111 1111110 00 


Q ss_pred             ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                       ....+.+|+|+-.-.=           ..+....+.|++||+++..
T Consensus        93 -~~~~~gvD~vid~vgg-----------~~~~~~l~~l~~~Griv~~  127 (176)
T d1xa0a2          93 -PLDKQRWAAAVDPVGG-----------RTLATVLSRMRYGGAVAVS  127 (176)
T ss_dssp             --CCSCCEEEEEECSTT-----------TTHHHHHHTEEEEEEEEEC
T ss_pred             -HhhccCcCEEEEcCCc-----------hhHHHHHHHhCCCceEEEe
Confidence             0135789998754321           2467789999999999874

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.77  E-value=0.0095  Score=41.77  Aligned_cols=97  Identities=20%  Similarity=0.115  Sum_probs=61.4

Q ss_pred             hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe---ccccccc
Q 027388           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC---GDCYEVH  155 (224)
Q Consensus        81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~---~d~~~~~  155 (224)
                      .+.++.+||=.|+  |.|.++.++++....+++++.-+++..+.+++...            .   ..+.   .|+.+.-
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga------------~---~vi~~~~~~~~~~v   86 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV------------E---YVGDSRSVDFADEI   86 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC------------S---EEEETTCSTHHHHH
T ss_pred             CCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccc------------c---ccccCCccCHHHHH
Confidence            4567888988774  44678888887777789988888888888876533            1   1111   1111110


Q ss_pred             cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      . .. .....||+|+..-.-           ..+..+.++|+++|.++..
T Consensus        87 ~-~~-t~~~g~d~v~d~~g~-----------~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          87 L-EL-TDGYGVDVVLNSLAG-----------EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             H-HH-TTTCCEEEEEECCCT-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             H-HH-hCCCCEEEEEecccc-----------hHHHHHHHHhcCCCEEEEE
Confidence            0 00 024689999964321           2456678999999998864

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.72  E-value=0.025  Score=39.63  Aligned_cols=99  Identities=15%  Similarity=0.002  Sum_probs=64.9

Q ss_pred             hhcCCCeEEEecCCC--chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc-
Q 027388           81 YARRGDVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-  157 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~--G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-  157 (224)
                      ..+++.+||=.|++.  |..+.++++....+++++.-+++..+.+++.-.               -..+..+-.+.... 
T Consensus        26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga---------------~~vi~~~~~~~~~~~   90 (182)
T d1v3va2          26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF---------------DAAFNYKTVNSLEEA   90 (182)
T ss_dssp             CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---------------SEEEETTSCSCHHHH
T ss_pred             CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh---------------hhhcccccccHHHHH
Confidence            457889999877755  567777877777899999999988888887644               12222111111000 


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ........+|+|+-.-.           ...+....++|+++|.++..
T Consensus        91 ~~~~~~~Gvd~v~D~vG-----------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          91 LKKASPDGYDCYFDNVG-----------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             HHHHCTTCEEEEEESSC-----------HHHHHHHGGGEEEEEEEEEC
T ss_pred             HHHhhcCCCceeEEecC-----------chhhhhhhhhccCCCeEEee
Confidence            00013568999985421           13567899999999998874

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.70  E-value=0.033  Score=38.60  Aligned_cols=94  Identities=17%  Similarity=0.056  Sum_probs=60.8

Q ss_pred             HhhcCCCeEEEecC-CC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           80 LYARRGDVVLDLAC-GK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGc-G~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      ....++++||=.|+ |. |..+.++++....++++++.++...+.+++.-.            .  . .+  |..+....
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa------------~--~-~i--~~~~~~~~   85 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGA------------E--E-AA--TYAEVPER   85 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTC------------S--E-EE--EGGGHHHH
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccccc------------c--e-ee--ehhhhhhh
Confidence            34678899998885 33 667777877777799999999988888876533            1  1 11  22221110


Q ss_pred             cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      ..  ....+|+|+-.  ..      +    .+....+.|+++|.++.
T Consensus        86 ~~--~~~g~D~v~d~--~G------~----~~~~~~~~l~~~G~~v~  118 (171)
T d1iz0a2          86 AK--AWGGLDLVLEV--RG------K----EVEESLGLLAHGGRLVY  118 (171)
T ss_dssp             HH--HTTSEEEEEEC--SC------T----THHHHHTTEEEEEEEEE
T ss_pred             hh--ccccccccccc--cc------h----hHHHHHHHHhcCCcEEE
Confidence            00  24679998853  11      1    24567889999999886

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.85  E-value=0.025  Score=39.67  Aligned_cols=45  Identities=18%  Similarity=0.093  Sum_probs=36.9

Q ss_pred             CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ++.+||=||+|. |..+...+..-...|+.+|.+...++..+....
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~   73 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG   73 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence            678999999998 556666665677899999999999999987754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.85  E-value=0.18  Score=32.90  Aligned_cols=107  Identities=10%  Similarity=-0.076  Sum_probs=59.0

Q ss_pred             EEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388           88 VLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (224)
Q Consensus        88 iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (224)
                      ++=+|+  |.++..+++   .....|+.+|.++..++.++...                ...+.+|..+...-... .-.
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~----------------~~~~~gd~~~~~~l~~a-~i~   63 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA----------------THAVIANATEENELLSL-GIR   63 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC----------------SEEEECCTTCTTHHHHH-TGG
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC----------------Ccceeeecccchhhhcc-CCc
Confidence            444555  555555543   35668999999998888775432                35667887654321110 235


Q ss_pred             CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhccc
Q 027388          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHF  221 (224)
Q Consensus       165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~gf  221 (224)
                      .+|.+++...-       ++....+-...+.+.+...++....+ ....+.|++.|.
T Consensus        64 ~a~~vi~~~~~-------~~~~~~~~~~~~~~~~~~~iiar~~~-~~~~~~l~~~Ga  112 (134)
T d2hmva1          64 NFEYVIVAIGA-------NIQASTLTTLLLKELDIPNIWVKAQN-YYHHKVLEKIGA  112 (134)
T ss_dssp             GCSEEEECCCS-------CHHHHHHHHHHHHHTTCSEEEEECCS-HHHHHHHHHHTC
T ss_pred             cccEEEEEcCc-------hHHhHHHHHHHHHHcCCCcEEeeccc-HhHHHHHHHCCC
Confidence            67877654321       22223333344444555666665544 344566666663

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.55  E-value=0.21  Score=34.15  Aligned_cols=100  Identities=13%  Similarity=0.069  Sum_probs=60.0

Q ss_pred             HhhcCCCeEEEecCCC-chhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388           80 LYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~-G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (224)
                      ...+++.+||=.|||. |.++.++++. ....++++|.++..++.+++.-.               ..++...-......
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa---------------~~~i~~~~~~~~~~   88 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA---------------TECINPQDFSKPIQ   88 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC---------------SEEECGGGCSSCHH
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC---------------cEEEeCCchhhHHH
Confidence            3467899999999874 3345555544 55689999999999999987644               12221110000000


Q ss_pred             --cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          158 --KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       158 --~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                        ......+.+|+|+-.-.-          ...++....++++||.+++
T Consensus        89 ~~~~~~~~~g~D~vid~~G~----------~~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2          89 EVLIEMTDGGVDYSFECIGN----------VKVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             HHHHHHTTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEE
T ss_pred             HHHHHHcCCCCcEeeecCCC----------HHHHHHHHHhhcCCceeEE
Confidence              000024679999864321          2456778888898866543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.65  E-value=0.56  Score=31.18  Aligned_cols=110  Identities=9%  Similarity=-0.095  Sum_probs=61.8

Q ss_pred             eEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccccCC
Q 027388           87 VVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLAD  162 (224)
Q Consensus        87 ~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~  162 (224)
                      .|+=+|+  |..+..+++   .....++.+|.+++..........            ...+.++.+|..+... ...  .
T Consensus         5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~------------~~~~~vi~Gd~~d~~~L~~a--~   68 (153)
T d1id1a_           5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL------------GDNADVIPGDSNDSSVLKKA--G   68 (153)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH------------CTTCEEEESCTTSHHHHHHH--T
T ss_pred             EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh------------cCCcEEEEccCcchHHHHHh--c
Confidence            3555555  555555544   345689999999865443333322            2247889999876432 111  3


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                      -+..|.+++..-       .+.....+....+.+.|...++...-+. .....|++.|
T Consensus        69 i~~a~~vi~~~~-------~d~~n~~~~~~~r~~~~~~~iia~~~~~-~~~~~l~~~G  118 (153)
T d1id1a_          69 IDRCRAILALSD-------NDADNAFVVLSAKDMSSDVKTVLAVSDS-KNLNKIKMVH  118 (153)
T ss_dssp             TTTCSEEEECSS-------CHHHHHHHHHHHHHHTSSSCEEEECSSG-GGHHHHHTTC
T ss_pred             cccCCEEEEccc-------cHHHHHHHHHHHHHhCCCCceEEEEcCH-HHHHHHHHCC
Confidence            467888876531       1333334444556667777777665443 3344455554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=92.23  E-value=0.1  Score=38.06  Aligned_cols=75  Identities=12%  Similarity=0.173  Sum_probs=47.2

Q ss_pred             eEEeccccccccccccCCCCCeeEEEEccccccc------cCCHH----HHHHHHHHHHhhccCCeEEEEEeCC--hHHH
Q 027388          145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS------WSTEA----RARRALANVSALLRPGGTFIGTMPD--ANVI  212 (224)
Q Consensus       145 ~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~------~~~~~----~~~~~l~~~~~~lk~gG~li~~~~~--~~~~  212 (224)
                      +++++|..+.-- ..  +++++|+|+..--...-      ..+..    .....+.++.++|+|||.+++....  ...+
T Consensus         6 ~i~~gDcle~l~-~l--pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~   82 (256)
T d1g60a_           6 KIHQMNCFDFLD-QV--ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFI   82 (256)
T ss_dssp             SEEECCHHHHHH-HS--CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHH
T ss_pred             EEEeccHHHHHh-hC--cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchhhhhh
Confidence            577888765421 11  57899999987532110      01122    2456788999999999988755432  3456


Q ss_pred             HHHhhhcccc
Q 027388          213 IKKLREEHFC  222 (224)
Q Consensus       213 ~~~~~~~gf~  222 (224)
                      ...+.+.||.
T Consensus        83 ~~~~~~~g~~   92 (256)
T d1g60a_          83 CQYLVSKGMI   92 (256)
T ss_dssp             HHHHHHTTCE
T ss_pred             hhhhhcccce
Confidence            6777777764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.00  E-value=0.15  Score=34.98  Aligned_cols=96  Identities=15%  Similarity=0.091  Sum_probs=60.5

Q ss_pred             cCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388           83 RRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (224)
Q Consensus        83 ~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (224)
                      .++.+||=-|+  |-|.++.++++....+++++.-|++..+.+++.-.            .  ..+...+.......  .
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGa------------d--~vi~~~~~~~~~~~--~   85 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGA------------S--EVISREDVYDGTLK--A   85 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTC------------S--EEEEHHHHCSSCCC--S
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcc------------c--ceEeccchhchhhh--c
Confidence            34556775554  44678888887777899999999999999887654            1  11111111111110  0


Q ss_pred             CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ...+.+|+|+-.-.           -..+....+.|+++|.++..
T Consensus        86 ~~~~gvd~vid~vg-----------g~~~~~~~~~l~~~G~iv~~  119 (167)
T d1tt7a2          86 LSKQQWQGAVDPVG-----------GKQLASLLSKIQYGGSVAVS  119 (167)
T ss_dssp             SCCCCEEEEEESCC-----------THHHHHHHTTEEEEEEEEEC
T ss_pred             ccCCCceEEEecCc-----------HHHHHHHHHHhccCceEEEe
Confidence            03468999875421           13667799999999998863

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.21  E-value=0.6  Score=31.77  Aligned_cols=48  Identities=19%  Similarity=0.227  Sum_probs=36.4

Q ss_pred             hhcCCCeEEEecCCCch-hHHHHHhh-cCCeEEEEeCChhHHHHHHHhcc
Q 027388           81 YARRGDVVLDLACGKGG-DLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        81 ~~~~~~~iLDiGcG~G~-~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      .++++.+||=+|+|.+. .+..++.. ...+++++|.++...+.+++...
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga   74 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA   74 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC
Confidence            46789999999997644 33444433 45689999999999999988754

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.12  E-value=2  Score=32.58  Aligned_cols=120  Identities=12%  Similarity=0.030  Sum_probs=68.4

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcc------------cccccccCCCCeeEEec
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDAD------------HHQRRKKFSFPARLICG  149 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~------------~~~~~~~~~~~v~~~~~  149 (224)
                      .+...|+-+|||.-.....+... ....++=||+.+.+-... +.+.....            ..........+.+++.+
T Consensus        95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~-~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~  173 (328)
T d1rjda_          95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKN-SILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  173 (328)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHH-HHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHH-HHHHhchhhhhhccccccccccccccCCCCCeEEEec
Confidence            45568999999998777776533 222455555544322222 22110000            00000011345778888


Q ss_pred             cccccccccc----cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          150 DCYEVHLDKV----LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       150 d~~~~~~~~~----~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      |+.+......    .......-++++=.++.|+  +.+...++++.+.+....+..++..
T Consensus       174 DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl--~~~~~~~li~~~~~~f~~~~~i~YE  231 (328)
T d1rjda_         174 DLNDITETTRLLDVCTKREIPTIVISECLLCYM--HNNESQLLINTIMSKFSHGLWISYD  231 (328)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS--CHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred             CCCCcHhhHHHHHccCCCCCCeEEEEeeehhcC--CHHHHHHHHHHHHHhCCCceEEEec
Confidence            9876532110    1123445577777889998  7788899999999888665545444

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.96  E-value=0.18  Score=37.11  Aligned_cols=58  Identities=22%  Similarity=0.356  Sum_probs=38.3

Q ss_pred             eEEeccccccccccccCCCCCeeEEEEccccccc---c----CCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS---W----STEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       145 ~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~---~----~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      .|+.+|..+.-- ..  +++++|+|+..-....-   +    +-.......+.++.++|+|+|.+++.
T Consensus         6 ~~~~~D~le~l~-~l--~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_           6 VYDVCDCLDTLA-KL--PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             EEEECCHHHHHH-TS--CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEechHHHHHh-hC--cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            466778765421 11  57899999987542210   0    00144677899999999999998875

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.72  E-value=1.3  Score=28.36  Aligned_cols=102  Identities=12%  Similarity=0.039  Sum_probs=63.9

Q ss_pred             CCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccccCCCCCeeEEE
Q 027388           93 CGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLADDAPFDICS  170 (224)
Q Consensus        93 cG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~~~D~i~  170 (224)
                      ||.|..+..+++. ....++.+|.++...+.....                .+.++.+|..+... ...  .-..++.++
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~----------------~~~~i~Gd~~~~~~L~~a--~i~~A~~vi   67 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS----------------GANFVHGDPTRVSDLEKA--NVRGARAVI   67 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT----------------TCEEEESCTTSHHHHHHT--TCTTCSEEE
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc----------------CccccccccCCHHHHHHh--hhhcCcEEE
Confidence            5667788887764 334688999999988877543                26788899875432 111  346788887


Q ss_pred             EccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388          171 CQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH  220 (224)
Q Consensus       171 ~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g  220 (224)
                      +..       +.+.....+....+.+.|...++...-+.. ....++..|
T Consensus        68 ~~~-------~~d~~n~~~~~~~r~~~~~~~iia~~~~~~-~~~~l~~~G  109 (129)
T d2fy8a1          68 VNL-------ESDSETIHCILGIRKIDESVRIIAEAERYE-NIEQLRMAG  109 (129)
T ss_dssp             ECC-------SSHHHHHHHHHHHHHHCSSSCEEEECSSGG-GHHHHHHHH
T ss_pred             Eec-------cchhhhHHHHHHHHHHCCCceEEEEEcCHH-HHHHHHHCC
Confidence            643       223444455556677888888777765543 233344444

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.65  E-value=0.58  Score=33.99  Aligned_cols=82  Identities=18%  Similarity=0.124  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc--
Q 027388           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK--  158 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  158 (224)
                      .|+.+|=-|++.| ++..++.   ....+|+.+|.+.+.++...+.+..          ...++.++.+|+.+...-.  
T Consensus         6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~----------~~~~~~~~~~Dvs~~~~v~~~   74 (244)
T d1yb1a_           6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG----------LGAKVHTFVVDCSNREDIYSS   74 (244)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------TTCCEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----------cCCcEEEEEeeCCCHHHHHHH
Confidence            5677888888877 5554443   3456899999999998888777652          2445888999988753110  


Q ss_pred             ---ccCCCCCeeEEEEccccc
Q 027388          159 ---VLADDAPFDICSCQFAMH  176 (224)
Q Consensus       159 ---~~~~~~~~D~i~~~~~l~  176 (224)
                         .....+..|+++.+..+.
T Consensus        75 ~~~i~~~~g~idilinnag~~   95 (244)
T d1yb1a_          75 AKKVKAEIGDVSILVNNAGVV   95 (244)
T ss_dssp             HHHHHHHTCCCSEEEECCCCC
T ss_pred             HHHHHHHcCCCceeEeecccc
Confidence               001347799998765443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=89.32  E-value=1.1  Score=30.39  Aligned_cols=102  Identities=14%  Similarity=0.035  Sum_probs=57.1

Q ss_pred             CeEEEecCCCchhHHH-HHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc-ccccccccCCC
Q 027388           86 DVVLDLACGKGGDLIK-WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EVHLDKVLADD  163 (224)
Q Consensus        86 ~~iLDiGcG~G~~~~~-l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~  163 (224)
                      ++|-=||+|.-+.... .+.....+|+++|.++..++..++.-...        .............. .....+   ..
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~e---~~   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAII--------AEGPGLAGTAHPDLLTSDIGL---AV   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEE--------EESSSCCEEECCSEEESCHHH---HH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCc--------hhhhhhhhhhhhhhhhhhhHh---Hh
Confidence            5677788887443332 22235569999999998888877653200        00000111111100 000100   12


Q ss_pred             CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ..+|+|+..-       +......++.++...++++..+++.
T Consensus        71 ~~aD~iii~v-------~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          71 KDADVILIVV-------PAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             TTCSEEEECS-------CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             cCCCEEEEEE-------chhHHHHHHHHhhhccCCCCEEEEe
Confidence            5789998643       2244678899999999998876654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.26  E-value=1.7  Score=29.82  Aligned_cols=94  Identities=10%  Similarity=-0.123  Sum_probs=55.1

Q ss_pred             CeEEEec--CCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388           86 DVVLDLA--CGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (224)
Q Consensus        86 ~~iLDiG--cG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (224)
                      .+||=.|  .|.|.++.++++... ..++++.-+++....+.+.+..              ...+...-..+........
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga--------------d~vi~~~~~~~~~~~~~~~   97 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF--------------DAAVNYKTGNVAEQLREAC   97 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC--------------SEEEETTSSCHHHHHHHHC
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc--------------eEEeeccchhHHHHHHHHh
Confidence            6788766  466889999987654 4677888777666555444331              1122211111110000002


Q ss_pred             CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (224)
Q Consensus       163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~  204 (224)
                      ...+|+|+-.-.           ...+....+.|+++|+++.
T Consensus        98 ~~GvDvv~D~vG-----------g~~~~~~~~~l~~~G~iv~  128 (187)
T d1vj1a2          98 PGGVDVYFDNVG-----------GDISNTVISQMNENSHIIL  128 (187)
T ss_dssp             TTCEEEEEESSC-----------HHHHHHHHTTEEEEEEEEE
T ss_pred             ccCceEEEecCC-----------chhHHHHhhhccccccEEE
Confidence            467999974321           1356788999999999885

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=88.70  E-value=0.36  Score=37.95  Aligned_cols=46  Identities=11%  Similarity=0.060  Sum_probs=37.6

Q ss_pred             cCCCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhcc
Q 027388           83 RRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      .++..++|||+-.|..+..++..   ...+++++|+++...+..++++.
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~  259 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR  259 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            46778999999999887766543   34689999999999999988765

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.12  E-value=2.7  Score=28.57  Aligned_cols=93  Identities=16%  Similarity=0.129  Sum_probs=58.5

Q ss_pred             CCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388           84 RGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (224)
Q Consensus        84 ~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (224)
                      ++.+||=.|+  |.|..++++++....+++++.-+++..+.+++.-.               ..++.-+  +....... 
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGa---------------d~vi~~~--~~~~~~~l-   92 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA---------------SRVLPRD--EFAESRPL-   92 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE---------------EEEEEGG--GSSSCCSS-
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcc---------------ccccccc--cHHHHHHH-
Confidence            3446665554  34668888888788899999999999988876543               1222222  11111000 


Q ss_pred             CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~  205 (224)
                      ....+|.++- .+      ..    ..+....+.|+++|.++..
T Consensus        93 ~~~~~~~vvD-~V------gg----~~~~~~l~~l~~~Griv~~  125 (177)
T d1o89a2          93 EKQVWAGAID-TV------GD----KVLAKVLAQMNYGGCVAAC  125 (177)
T ss_dssp             CCCCEEEEEE-SS------CH----HHHHHHHHTEEEEEEEEEC
T ss_pred             HhhcCCeeEE-Ec------ch----HHHHHHHHHhccccceEee
Confidence            3456787752 22      11    3578899999999998874

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.51  E-value=1.4  Score=31.66  Aligned_cols=76  Identities=18%  Similarity=0.170  Sum_probs=51.8

Q ss_pred             CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccc
Q 027388           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKV  159 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  159 (224)
                      .++++|=.|++.| ++..+++   ....+|+.+|.++..++...+...              .+.++++|+.+... ...
T Consensus         6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~--------------~~~~~~~Dv~d~~~v~~~   70 (244)
T d1pr9a_           6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVRECP--------------GIEPVCVDLGDWEATERA   70 (244)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST--------------TCEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC--------------CCeEEEEeCCCHHHHHHH
Confidence            6889999998876 5544443   245689999999988887766644              36778888875431 111


Q ss_pred             cCCCCCeeEEEEccc
Q 027388          160 LADDAPFDICSCQFA  174 (224)
Q Consensus       160 ~~~~~~~D~i~~~~~  174 (224)
                      ...-++.|+++.+-.
T Consensus        71 ~~~~g~iDilVnnAg   85 (244)
T d1pr9a_          71 LGSVGPVDLLVNNAA   85 (244)
T ss_dssp             HTTCCCCCEEEECCC
T ss_pred             HHHhCCceEEEeccc
Confidence            224478999987653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=1.1  Score=32.59  Aligned_cols=83  Identities=14%  Similarity=0.052  Sum_probs=55.1

Q ss_pred             cCCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc--
Q 027388           83 RRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--  157 (224)
Q Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--  157 (224)
                      .+++.+|=.|++.| ++..+++   ....+|++++.++..++.+.+.+..        .....++.++++|+.+....  
T Consensus         8 lk~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~--------~~~~~~~~~~~~Dls~~~~v~~   78 (257)
T d1xg5a_           8 WRDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKS--------AGYPGTLIPYRCDLSNEEDILS   78 (257)
T ss_dssp             GTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------TTCSSEEEEEECCTTCHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------cCCCceEEEEEccCCCHHHHHH
Confidence            36889999998877 5554443   2456899999999988887776652        22334578889998764210  


Q ss_pred             ---cccCCCCCeeEEEEccc
Q 027388          158 ---KVLADDAPFDICSCQFA  174 (224)
Q Consensus       158 ---~~~~~~~~~D~i~~~~~  174 (224)
                         .....-+..|+++.+-.
T Consensus        79 ~v~~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          79 MFSAIRSQHSGVDICINNAG   98 (257)
T ss_dssp             HHHHHHHHHCCCSEEEECCC
T ss_pred             HHHHHHHhcCCCCEEEeccc
Confidence               00002368999987643

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=85.60  E-value=0.49  Score=35.24  Aligned_cols=61  Identities=13%  Similarity=0.204  Sum_probs=40.5

Q ss_pred             eeEEeccccccccccccCCCCCeeEEEEccccccc----cC--C----HHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388          144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS----WS--T----EARARRALANVSALLRPGGTFIGTMP  207 (224)
Q Consensus       144 v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~----~~--~----~~~~~~~l~~~~~~lk~gG~li~~~~  207 (224)
                      -+++++|..+..- ..  +++++|+|+..-...-.    .+  .    ...+...+..+.++|+++|.+++...
T Consensus        13 ~~l~~GD~le~l~-~l--~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~   83 (320)
T d1booa_          13 GSMYIGDSLELLE-SF--PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   83 (320)
T ss_dssp             EEEEESCHHHHGG-GS--CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEehhHHHHHh-hC--ccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccccc
Confidence            4788999765322 11  57899999987532110    00  1    12356789999999999999988644

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=84.19  E-value=0.78  Score=31.06  Aligned_cols=49  Identities=10%  Similarity=0.040  Sum_probs=36.6

Q ss_pred             HhhcCCCeEEEecCCCchhHHH-HHhh-cCCeEEEEeCChhHHHHHHHhcc
Q 027388           80 LYARRGDVVLDLACGKGGDLIK-WDKA-KIGYYVGIDIAEGSIEDCRTRYN  128 (224)
Q Consensus        80 ~~~~~~~~iLDiGcG~G~~~~~-l~~~-~~~~~~gvD~s~~~~~~a~~~~~  128 (224)
                      ...+++.+||=+|+|.+..... .+.. ....++++|.++..++.+++.-.
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA   74 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA   74 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC
Confidence            3567889999999988554433 3333 55689999999999999987643

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.02  E-value=4.2  Score=29.43  Aligned_cols=111  Identities=12%  Similarity=0.073  Sum_probs=66.4

Q ss_pred             CCeEEEecCCCchhHHHHHh----hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc---
Q 027388           85 GDVVLDLACGKGGDLIKWDK----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD---  157 (224)
Q Consensus        85 ~~~iLDiGcG~G~~~~~l~~----~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---  157 (224)
                      +++|.=|=.|+++++..+++    .....|+.++.+...++.+.+.+..          ...++.++.+|+.+...-   
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~----------~~~~~~~~~~Dvs~~~sv~~~   71 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA----------EGLSPRFHQLDIDDLQSIRAL   71 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH----------TTCCCEEEECCTTCHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh----------cCCcEEEEEEecCCHHHHHHH
Confidence            45664443344445554443    3467899999999988888777652          134578899998764310   


Q ss_pred             --cccCCCCCeeEEEEccccccc---cCC-HHH-----------HHHHHHHHHhhccCCeEEEEE
Q 027388          158 --KVLADDAPFDICSCQFAMHYS---WST-EAR-----------ARRALANVSALLRPGGTFIGT  205 (224)
Q Consensus       158 --~~~~~~~~~D~i~~~~~l~~~---~~~-~~~-----------~~~~l~~~~~~lk~gG~li~~  205 (224)
                        ......+..|+++.+-.+...   .+. .++           ...+.+.+...|+++|.++..
T Consensus        72 ~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          72 RDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             HHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence              011123689999987543221   111 112           223566677788888987754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.51  E-value=3.2  Score=29.66  Aligned_cols=75  Identities=19%  Similarity=0.123  Sum_probs=50.3

Q ss_pred             CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccc
Q 027388           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKV  159 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  159 (224)
                      +++++|=.|++.| ++..+++   ....+|+.+|.++..++...+...              .+.++++|+.+... ...
T Consensus         4 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~--------------~~~~~~~Dv~~~~~v~~~   68 (242)
T d1cyda_           4 SGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP--------------GIEPVCVDLGDWDATEKA   68 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST--------------TCEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC--------------CCeEEEEeCCCHHHHHHH
Confidence            5788888887766 5554443   355689999999887777666544              36778888876432 111


Q ss_pred             cCCCCCeeEEEEcc
Q 027388          160 LADDAPFDICSCQF  173 (224)
Q Consensus       160 ~~~~~~~D~i~~~~  173 (224)
                      ...-+..|+++.+-
T Consensus        69 ~~~~g~iDilVnnA   82 (242)
T d1cyda_          69 LGGIGPVDLLVNNA   82 (242)
T ss_dssp             HTTCCCCSEEEECC
T ss_pred             HHHcCCCeEEEECC
Confidence            22347899998764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=81.33  E-value=2.9  Score=30.19  Aligned_cols=79  Identities=16%  Similarity=0.082  Sum_probs=52.7

Q ss_pred             CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc----
Q 027388           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL----  156 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----  156 (224)
                      +++++|=-|++.| ++..+++   ....+|+.+|.+++.++.+.+.+..          ...++.++.+|+.+...    
T Consensus         4 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~----------~g~~~~~~~~Dv~~~~~v~~~   72 (260)
T d1zema1           4 NGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVRE----------KGVEARSYVCDVTSEEAVIGT   72 (260)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT----------TTSCEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----------cCCcEEEEEccCCCHHHHHHH
Confidence            6788888887766 4444433   3556899999999999888877652          24457888999876421    


Q ss_pred             -ccccCCCCCeeEEEEcc
Q 027388          157 -DKVLADDAPFDICSCQF  173 (224)
Q Consensus       157 -~~~~~~~~~~D~i~~~~  173 (224)
                       ......-+..|+++.+-
T Consensus        73 ~~~~~~~~g~iDilVnna   90 (260)
T d1zema1          73 VDSVVRDFGKIDFLFNNA   90 (260)
T ss_dssp             HHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHhCCCCeehhhh
Confidence             00011236899998664

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=80.14  E-value=3.6  Score=29.80  Aligned_cols=79  Identities=14%  Similarity=-0.001  Sum_probs=52.5

Q ss_pred             CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-c--
Q 027388           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-D--  157 (224)
Q Consensus        84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~--  157 (224)
                      +++++|=.|++.| ++..+++   ....+|+.+|.++..++.+.+.+..           ...+.++.+|+.+... .  
T Consensus         5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-----------~~~~~~~~~Dv~~~~~v~~~   72 (268)
T d2bgka1           5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-----------PDVISFVHCDVTKDEDVRNL   72 (268)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----------TTTEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-----------CCceEEEEccCCCHHHHHHH
Confidence            6788888898877 5554443   3456899999999888887776652           2347788899876321 0  


Q ss_pred             --cccCCCCCeeEEEEccc
Q 027388          158 --KVLADDAPFDICSCQFA  174 (224)
Q Consensus       158 --~~~~~~~~~D~i~~~~~  174 (224)
                        .....-+..|+++.+-.
T Consensus        73 ~~~~~~~~g~iD~lVnnAG   91 (268)
T d2bgka1          73 VDTTIAKHGKLDIMFGNVG   91 (268)
T ss_dssp             HHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHcCCcceeccccc
Confidence              00012368999997653