Citrus Sinensis ID: 027417

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCSS
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEEEEEEccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHcEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLArfardefypnskstigvefqtqkmdingKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNelhthsdmNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFmetsaldssnvtAAFQTVVTEIYNILSRKVMISQElkqkdsssfngktvvlegekkeadaepkkagccss
Flexible Loop (DISEMBL)
mafyseedraeDYLFKVVLIGDSAVGKSNLLarfardefypnskSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNElhthsdmnvVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISqelkqkdsssfngktvvlegekkeadaepkkagccss
Low Complexity Region (SEG)
MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLegekkeadaepkkaGCCSS
Disordered region (IsUnstruct)
**********EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMI**************************************
Disordered Region (DISOPRED)
***********DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN***************************************KAGCCS*
Disordered Region (DISEMBL)
********RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEG*****************
Disordered Region (DISPRO)
*******DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK*****************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCSS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q9FGK5	221	Ras-related protein RABA5	yes	no	0.986	0.995	0.857	1e-108
P28187	214	Ras-related protein RABA5	no	no	0.941	0.981	0.622	9e-74
P19892	218	Ras-related protein RABA5	no	no	0.955	0.977	0.628	2e-73
Q9SIP0	219	Ras-related protein RABA5	no	no	0.968	0.986	0.625	5e-73
Q9SRS5	217	Ras-related protein RABA5	no	no	0.955	0.981	0.626	9e-73
Q40191	226	Ras-related protein Rab11	N/A	no	0.977	0.964	0.588	2e-71
P25766	226	Ras-related protein RGP1	no	no	0.973	0.960	0.594	6e-71
Q9FE79	223	Ras-related protein RABA4	no	no	0.973	0.973	0.578	1e-69
Q9SMQ6	224	Ras-related protein RABA4	no	no	0.937	0.933	0.594	2e-69
Q40522	222	Ras-related protein Rab11	N/A	no	0.973	0.977	0.565	2e-69

>sp|Q9FGK5|RAA5A_ARATH Ras-related protein RABA5a OS=Arabidopsis thaliana GN=RABA5A PE=2 SV=1

 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/224 (85%), Positives = 204/224 (91%), Gaps = 4/224 (1%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           MAFYSE+D++EDYLFK+VLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING
Sbjct: 1   MAFYSEDDKSEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KE+KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTF SIGRWLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFHSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           VTILVGNKSDLKD REV+TAEGKALAEAQGLFFMETSALDSSNV AAF+TVV EIYNILS
Sbjct: 121 VTILVGNKSDLKDLREVSTAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILS 180

Query: 181 RKVMISQELKQKDSSSF-NGKTVVLEGEKKEADAEPKKAGCCSS 223
           RKVM SQEL ++D +S  NGK VV+     +   E KK GCCSS
Sbjct: 181 RKVMSSQELNKQDPASLSNGKKVVI---PSDGQGEFKKGGCCSS 221

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|P28187|RAA5C_ARATH Ras-related protein RABA5c OS=Arabidopsis thaliana GN=RABA5C PE=1 SV=1

 Score =  276 bits (706), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 135/217 (62%), Positives = 171/217 (78%), Gaps = 7/217 (3%)

Query: 6   EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKA 65
           +++R E+YLFK+V+IGDSAVGKSNLL R+AR+EF PNSK+TIGVEFQTQ M I+GKEVKA
Sbjct: 4   DDERGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKA 63

Query: 66  QIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV 125
           QIWDTAGQERFRAVTSAYYRGAVGAL+VYDI+R  TF+++GRWL+EL+THSD  V  +L+
Sbjct: 64  QIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLI 123

Query: 126 GNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMI 185
           GNK DL+  R V+  EGK+LAE++GLFFMETSALDS+NV  AF+ V+ EIY+ +SRK + 
Sbjct: 124 GNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLN 183

Query: 186 SQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222
           S   K++   + N  ++V     K  +   K   CCS
Sbjct: 184 SDSYKEE--LTVNRVSLV-----KNENEGTKTFSCCS 213

Intracellular vesicle trafficking and protein transport. Binds GTP and GDP and possesses intrinsic GTPase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|P19892|RAA5E_ARATH Ras-related protein RABA5e OS=Arabidopsis thaliana GN=RABA5E PE=2 SV=1

 Score =  275 bits (703), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 139/221 (62%), Positives = 173/221 (78%), Gaps = 8/221 (3%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
           S+++  E+YLFK+V+IGDSAVGKSNLL+R+AR+EF  NSK+TIGVEFQTQ M+I GKEVK
Sbjct: 3   SDDEGREEYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVK 62

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTIL 124
           AQIWDTAGQERFRAVTSAYYRGAVGAL+VYDI+RR TF+S+GRWL+EL  HSD  V  +L
Sbjct: 63  AQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARML 122

Query: 125 VGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVM 184
           VGNK DL++ R V+  EGKALAE +GLFF+ETSALDS+NV  AF+ V+ +IYN +SRK +
Sbjct: 123 VGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQL 182

Query: 185 ISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAG--CCSS 223
            S     KD  + N  ++V    K +  A  + +G  CCSS
Sbjct: 183 NSDTY--KDELTVNRVSLV----KDDNSASKQSSGFSCCSS 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIP0|RAA5D_ARATH Ras-related protein RABA5d OS=Arabidopsis thaliana GN=RABA5D PE=2 SV=1

 Score =  273 bits (699), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 137/219 (62%), Positives = 168/219 (76%), Gaps = 3/219 (1%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
           S+++  E+YLFK+V+IGDSAVGKSNLL+R+AR+EF  +SK+TIGVEFQTQ M+I GKEVK
Sbjct: 3   SDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQNMEIEGKEVK 62

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTIL 124
           AQIWDTAGQERFRAVTSAYYRGAVGAL+VYDISRR TF+S+GRWL+EL THSD  V  +L
Sbjct: 63  AQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRSTFESVGRWLDELKTHSDTTVARML 122

Query: 125 VGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVM 184
           VGNK DL+  R V+  EGKALAE +GLFFMETSALDS+NV  AF+ V+ +IY  +SRK +
Sbjct: 123 VGNKCDLESIRAVSVEEGKALAETEGLFFMETSALDSTNVKTAFEMVIRDIYTNISRKQL 182

Query: 185 ISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCSS 223
            S   K + S       V L  +  ++  +     CCSS
Sbjct: 183 NSDTYKTELSMK---NRVSLVKDDNKSSTQGFGFSCCSS 218

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRS5|RAA5B_ARATH Ras-related protein RABA5b OS=Arabidopsis thaliana GN=RABA5B PE=2 SV=1

 Score =  273 bits (697), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 136/217 (62%), Positives = 168/217 (77%), Gaps = 4/217 (1%)

Query: 6   EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKA 65
           E+DR E+YLFK+VLIGDSAVGKSNLL+RF+RDEF  NSK+TIGVEFQTQ ++I GKEVKA
Sbjct: 4   EDDRGEEYLFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIEGKEVKA 63

Query: 66  QIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV 125
           QIWDTAGQERFRAVTSAYYRGA GAL+VYDI+R  TF+S+ RWL EL+TH D  V  +LV
Sbjct: 64  QIWDTAGQERFRAVTSAYYRGAFGALIVYDITRGDTFESVKRWLQELNTHCDTAVAQMLV 123

Query: 126 GNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMI 185
           GNK DL+D R V+  EGKALAE +GLFFMETSALD++NV  AF+ V+ EI+N +SRK++ 
Sbjct: 124 GNKCDLEDIRAVSVEEGKALAEEEGLFFMETSALDATNVDKAFEIVIREIFNNVSRKLLN 183

Query: 186 SQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222
           S   K + S +     V L   +  +++  +   CCS
Sbjct: 184 SDAYKAELSVN----RVSLVNNQDGSESSWRNPSCCS 216

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40191|RB11A_LOTJA Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1

 Score =  268 bits (685), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/221 (58%), Positives = 172/221 (77%), Gaps = 3/221 (1%)

Query: 4   YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEV 63
           Y + +   DY+FKVVLIGDSAVGKS +LARFAR+EF  +SKSTIGVEFQT+ + I+ K V
Sbjct: 7   YGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTV 66

Query: 64  KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI 123
           KAQIWDTAGQER+RAVTSAYYRGAVGA+LVYDI++RQTFD I RWL EL  H+D N+V I
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVII 126

Query: 124 LVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
           L+GNK DL + R+V T + K  AE +GLFF+ETSAL+++NV +AF TV+TEIYNI+++K 
Sbjct: 127 LIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKS 186

Query: 184 MISQELK-QKDSSSFNGKTVVLEGEKKEADAEPKKAGCCSS 223
           + + E +   +S+S +G+ +++ G  +E  A  K+  CC +
Sbjct: 187 LAADESQGNGNSASLSGQKIIIPGPAQEIPA--KRNMCCQA 225

Lotus japonicus (taxid: 34305)

>sp|P25766|RLGP1_ORYSJ Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2

 Score =  266 bits (681), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 132/222 (59%), Positives = 166/222 (74%), Gaps = 5/222 (2%)

Query: 4   YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEV 63
           Y E  +  DY+FKVVLIGDSAVGKS LLARFAR+EF  +SK+TIGVEFQT+ + I+ + V
Sbjct: 8   YGEVGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTV 67

Query: 64  KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI 123
           KAQIWDTAGQER+RAVTSAYYRGAVGA+LVYDI++RQ+FD + RWL EL  H+D N+V +
Sbjct: 68  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIM 127

Query: 124 LVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
           L+GNKSDL   R V T + K  AE + LFFMETSAL+S+NV  AF TV+TEIY I+S+K 
Sbjct: 128 LIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKN 187

Query: 184 MISQEL--KQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCSS 223
           +++ E      +SS   G  +V+ G++    A P KA CC S
Sbjct: 188 LVANEEVDSSGNSSLLKGTKIVVPGQEP---APPTKASCCMS 226

May play an important role in plant growth and development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FE79|RAA4C_ARATH Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1

 Score =  262 bits (670), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/223 (57%), Positives = 167/223 (74%), Gaps = 6/223 (2%)

Query: 3   FYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKE 62
           F S  ++  DY+FKVVLIGDSAVGKS LLARF+R+EF   SK+TIGVEFQT+ ++I+ K 
Sbjct: 4   FQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEIDRKT 63

Query: 63  VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVT 122
           +KAQIWDTAGQER+RAVTSAYYRGAVGA+LVYDI++RQ+FD + RWL EL  H+D N+V 
Sbjct: 64  IKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVI 123

Query: 123 ILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
           +L+GNK+DL   R V T + K  A+ + LFFMETSALDS+NV  +F TV+TEIY I+S+K
Sbjct: 124 MLIGNKTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKK 183

Query: 183 VMISQELKQK--DSSSFNGKTVVLEGEKKEADAEPKKAGCCSS 223
            +++ E  +   DSS   G  +V+ GE    + E K  GCC +
Sbjct: 184 NLVANEEGESGGDSSLLQGTKIVVAGE----ETESKGKGCCGT 222

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMQ6|RAA4B_ARATH Ras-related protein RABA4b OS=Arabidopsis thaliana GN=RABA4B PE=2 SV=1

 Score =  262 bits (669), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 126/212 (59%), Positives = 164/212 (77%), Gaps = 3/212 (1%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DY+FKVVLIGDSAVGKS LLARFARDEF  +SK+TIGVEFQT+ + I  K +KAQIWDTA
Sbjct: 15  DYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSIKAQIWDTA 74

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQER+RAVTSAYYRGAVGA+LVYD+++R+TF+ I RWL EL  H+D N+V IL+GNKSDL
Sbjct: 75  GQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVIILIGNKSDL 134

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQ 191
           +D R V T + K  AE +GLFF+ETSAL+++NV  +F T++T+IYN +++K + S E   
Sbjct: 135 EDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKNLAS-EGDS 193

Query: 192 KDSSSFNGKTVVLEGEKKEADAEPKKAGCCSS 223
            +  S  GK +++ G  +E  A  K + CC+S
Sbjct: 194 NNPGSLAGKKILIPGSGQEIPA--KTSTCCTS 223

Regulator of membrane trafficking. May be required for secretion of cell wall components in cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40522|RB11D_TOBAC Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1

 Score =  262 bits (669), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 169/221 (76%), Gaps = 4/221 (1%)

Query: 4   YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEV 63
           Y +  +  DY+FKVVLIGDSAVGKS +LARFAR+EF  +SK+TIGVEFQT+ + I  K V
Sbjct: 5   YGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSV 64

Query: 64  KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI 123
           KAQIWDTAGQER+RAVTSAYYRGAVGA+LVYDI++RQTFD I RWL EL  H+D N+V +
Sbjct: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIM 124

Query: 124 LVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
           L+GNK+DL+D R V T + K  A+ +GLFF+ETSA++++N+  AF TV+TEI+NI+++K 
Sbjct: 125 LIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKN 184

Query: 184 MISQELKQK-DSSSFNGKTVVLEGEKKEADAEPKKAGCCSS 223
           + + + +   + +S  GK +++ G  +     P+K  CCSS
Sbjct: 185 LAADDNQSNGNPASLTGKKILVPGPGQ---VIPEKKACCSS 222

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
356535256	223	PREDICTED: ras-related protein RABA5a-li	0.995	0.995	0.883	1e-110
449443538	224	PREDICTED: ras-related protein RABA5a-li	0.995	0.991	0.875	1e-109
363807622	226	uncharacterized protein LOC100789187 [Gl	0.995	0.982	0.872	1e-109
560504	223	guanine nucleotide regulatory protein [V	0.995	0.995	0.870	1e-109
1370160	223	RAB11J [Lotus japonicus]	0.995	0.995	0.861	1e-108
224139494	224	predicted protein [Populus trichocarpa]	0.995	0.991	0.866	1e-108
224086488	225	predicted protein [Populus trichocarpa]	1.0	0.991	0.857	1e-108
5714658	224	Rab GTP-binding protein Rab11a [Gossypiu	0.995	0.991	0.848	1e-108
297790909	221	hypothetical protein ARALYDRAFT_494220 [	0.986	0.995	0.857	1e-107
15238115	221	RAB GTPase homolog A5A [Arabidopsis thal	0.986	0.995	0.857	1e-107

>gi|356535256|ref|XP_003536164.1| PREDICTED: ras-related protein RABA5a-like [Glycine max]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/224 (88%), Positives = 208/224 (92%), Gaps = 2/224 (0%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           MAFY+EE++ EDYLFK+VLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING
Sbjct: 1   MAFYNEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           VTILVGNKSDLKDAREV TAEGKALAEAQGLFFMETSALDSSNV AAF+TVV EIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVATAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILS 180

Query: 181 RKVMISQELKQKDSSSF-NGKTVVLEGEKKEADAEPKKAGCCSS 223
           RKVMISQEL ++D +   NGKTVVL+GE     A+ KK GCCSS
Sbjct: 181 RKVMISQELNKQDVTRIENGKTVVLQGEGDVEAAQSKK-GCCSS 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443538|ref|XP_004139534.1| PREDICTED: ras-related protein RABA5a-like [Cucumis sativus] gi|449508980|ref|XP_004163459.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein RABA5a-like [Cucumis sativus]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/225 (87%), Positives = 211/225 (93%), Gaps = 3/225 (1%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           MAFYSEE++ EDYLFK+VLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQK++ING
Sbjct: 1   MAFYSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKIEING 60

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KE+KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           VTILVGNKSDLKDAREV TAEGK+LAEAQGLFF+ETSALDSSNVT AFQTVV EIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVPTAEGKSLAEAQGLFFIETSALDSSNVTNAFQTVVKEIYNILS 180

Query: 181 RKVMISQELKQKDSSSF-NGK-TVVLEGEKKEADAEPKKAGCCSS 223
           RKVMISQELK++D S   NGK TVV++GE  + + EPKK GCCSS
Sbjct: 181 RKVMISQELKKQDVSWMENGKTTVVIQGE-DQVEGEPKKGGCCSS 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807622|ref|NP_001242668.1| uncharacterized protein LOC100789187 [Glycine max] gi|255641449|gb|ACU21000.1| unknown [Glycine max]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/227 (87%), Positives = 211/227 (92%), Gaps = 5/227 (2%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           MAFY+EE++ EDYLFK+VLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING
Sbjct: 1   MAFYNEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           VTILVGNKSDLKDAR+V TAEGKALAEAQGLFFMETSALDSSNV AAF+TVV EIYNILS
Sbjct: 121 VTILVGNKSDLKDARKVATAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILS 180

Query: 181 RKVMISQELKQKDSSSF-NGKTVVLEGEKK---EADAEPKKAGCCSS 223
           RKVM+SQEL ++D +   NGKTVVL+GE +   EADA+ KK  CCSS
Sbjct: 181 RKVMMSQELNKQDVTRIENGKTVVLQGEGEGDGEADAQSKKR-CCSS 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|560504|emb|CAA82710.1| guanine nucleotide regulatory protein [Vicia faba] gi|1098296|prf||2115367D small GTP-binding protein

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/224 (87%), Positives = 209/224 (93%), Gaps = 2/224 (0%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           MAFY+EE++ EDYLFK+VLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM+ING
Sbjct: 1   MAFYNEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEING 60

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           VTILVGNKSDLKDAREV T EGKALAEAQGLFFMETSALDSSNV +AFQTVV EIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVPTPEGKALAEAQGLFFMETSALDSSNVVSAFQTVVKEIYNILS 180

Query: 181 RKVMISQELKQKDSS-SFNGKTVVLEGEKKEADAEPKKAGCCSS 223
           RKVM+SQELK++D+  + NGKTVVL+   +E + E KK GCCSS
Sbjct: 181 RKVMMSQELKKQDTPWTENGKTVVLQEGDREVEVESKK-GCCSS 223

Source: Vicia faba

Species: Vicia faba

Genus: Vicia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370160|emb|CAA98186.1| RAB11J [Lotus japonicus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/224 (86%), Positives = 208/224 (92%), Gaps = 2/224 (0%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           MA Y+E+++ EDYLFK+VLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQK+DING
Sbjct: 1   MAHYNEDEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKIDING 60

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KE+KAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDISRRQTFDSIGRWLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRQTFDSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNV AAFQTVV EIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVAAAFQTVVKEIYNILS 180

Query: 181 RKVMISQELKQKDSSSF-NGKTVVLEGEKKEADAEPKKAGCCSS 223
           RKVM+SQEL + +     NGK+VV++GE  EAD + KK GCCSS
Sbjct: 181 RKVMMSQELTKHEVPRIENGKSVVIQGENLEADGQSKK-GCCSS 223

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139494|ref|XP_002323139.1| predicted protein [Populus trichocarpa] gi|222867769|gb|EEF04900.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/225 (86%), Positives = 208/225 (92%), Gaps = 3/225 (1%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           MAFYSE+D+AEDYLFK+VLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING
Sbjct: 1   MAFYSEDDKAEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KE+KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDS+GRWLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSVGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           VTILVGNKSDLKDAREV T EGK LAEAQGLFFMETSALDSSNV AAFQTVV EIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVPTVEGKDLAEAQGLFFMETSALDSSNVAAAFQTVVKEIYNILS 180

Query: 181 RKVMISQELKQKDSSSF-NGKTVVLEGE-KKEADAEPKKAGCCSS 223
           RKV++SQEL +  +    NGKTVVL+G+  +E +AE KK GCCSS
Sbjct: 181 RKVILSQELNKPGAPELGNGKTVVLQGDGNQEGNAETKK-GCCSS 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086488|ref|XP_002307897.1| predicted protein [Populus trichocarpa] gi|222853873|gb|EEE91420.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/225 (85%), Positives = 209/225 (92%), Gaps = 2/225 (0%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           MAFYSE+D+A+DYLFK+VLIGDSAVGKSNLLARFAR+EFYP+SKSTIGVEFQTQKMDING
Sbjct: 1   MAFYSEDDKADDYLFKIVLIGDSAVGKSNLLARFARNEFYPSSKSTIGVEFQTQKMDING 60

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KE+KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIG+WLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGKWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           VTILVGNKSDLKDAREV+TAEGKALAEAQGLFFMETSALDSSNV AAFQTVV EIYNILS
Sbjct: 121 VTILVGNKSDLKDAREVSTAEGKALAEAQGLFFMETSALDSSNVAAAFQTVVKEIYNILS 180

Query: 181 RKVMISQELKQKDSSSF-NGKTVVLEGE-KKEADAEPKKAGCCSS 223
           RKVM+SQEL +  +    NGKTVVL+G+  +E +A  KK  CCSS
Sbjct: 181 RKVMMSQELNKPGAPELGNGKTVVLKGDGDQEGNAGTKKGWCCSS 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5714658|gb|AAD48018.1| Rab GTP-binding protein Rab11a [Gossypium hirsutum]

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/225 (84%), Positives = 208/225 (92%), Gaps = 3/225 (1%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           MAF SEE++ EDYLFK+VL+GDSAVGKSNLLARFAR+EFYPNSKSTIGVEFQTQK+DING
Sbjct: 1   MAFVSEEEKTEDYLFKIVLVGDSAVGKSNLLARFARNEFYPNSKSTIGVEFQTQKLDING 60

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNEL THSDMNV
Sbjct: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELQTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           VTILVGNKSDL+DAREV+TAEGKALAEAQGLFFMETSALDSSNV AAFQTVV EIYNILS
Sbjct: 121 VTILVGNKSDLRDAREVSTAEGKALAEAQGLFFMETSALDSSNVAAAFQTVVKEIYNILS 180

Query: 181 RKVMISQELKQKDSSSFNGKTVVLEGEKKE--ADAEPKKAGCCSS 223
           RKVM+S ELK++D +  +GKTVVL+G++ +  A   PK  GCCSS
Sbjct: 181 RKVMMSHELKKQD-APLDGKTVVLQGDENQERATESPKSGGCCSS 224

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790909|ref|XP_002863339.1| hypothetical protein ARALYDRAFT_494220 [Arabidopsis lyrata subsp. lyrata] gi|297309174|gb|EFH39598.1| hypothetical protein ARALYDRAFT_494220 [Arabidopsis lyrata subsp. lyrata]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/224 (85%), Positives = 204/224 (91%), Gaps = 4/224 (1%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           MAFYSE+D++EDYLFK+VLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING
Sbjct: 1   MAFYSEDDKSEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KE+KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTF SIGRWLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFHSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           VTILVGNKSDLKD REV+TAEGKALAEAQGLFFMETSALDSSNV AAF+TVV EIYNILS
Sbjct: 121 VTILVGNKSDLKDLREVSTAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILS 180

Query: 181 RKVMISQELKQKDSSSF-NGKTVVLEGEKKEADAEPKKAGCCSS 223
           RKVM SQEL ++D +S  NGK VV+     +   E KK GCCSS
Sbjct: 181 RKVMSSQELNKQDPASLSNGKKVVI---PSDGQGESKKGGCCSS 221

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238115|ref|NP_199563.1| RAB GTPase homolog A5A [Arabidopsis thaliana] gi|75333810|sp|Q9FGK5.1|RAA5A_ARATH RecName: Full=Ras-related protein RABA5a; Short=AtRABA5a gi|9758780|dbj|BAB09078.1| GTP-binding protein-like [Arabidopsis thaliana] gi|28466933|gb|AAO44075.1| At5g47520 [Arabidopsis thaliana] gi|62321645|dbj|BAD95258.1| GTP-binding protein-like [Arabidopsis thaliana] gi|110743839|dbj|BAE99754.1| GTP-binding protein-like [Arabidopsis thaliana] gi|332008145|gb|AED95528.1| RAB GTPase homolog A5A [Arabidopsis thaliana]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/224 (85%), Positives = 204/224 (91%), Gaps = 4/224 (1%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           MAFYSE+D++EDYLFK+VLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING
Sbjct: 1   MAFYSEDDKSEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           KE+KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTF SIGRWLNELHTHSDMNV
Sbjct: 61  KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFHSIGRWLNELHTHSDMNV 120

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           VTILVGNKSDLKD REV+TAEGKALAEAQGLFFMETSALDSSNV AAF+TVV EIYNILS
Sbjct: 121 VTILVGNKSDLKDLREVSTAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILS 180

Query: 181 RKVMISQELKQKDSSSF-NGKTVVLEGEKKEADAEPKKAGCCSS 223
           RKVM SQEL ++D +S  NGK VV+     +   E KK GCCSS
Sbjct: 181 RKVMSSQELNKQDPASLSNGKKVVI---PSDGQGEFKKGGCCSS 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2169053	221	RABA5a "RAB GTPase homolog A5A	0.986	0.995	0.843	6.1e-94
TAIR|locus:2065858	219	RABA5d "RAB GTPase homolog A5D	0.968	0.986	0.625	1.3e-66
TAIR|locus:2041036	214	ARA4 [Arabidopsis thaliana (ta	0.838	0.873	0.684	1.7e-66
TAIR|locus:2079631	217	RABA5b "RAB GTPase homolog A5B	0.829	0.852	0.702	2e-65
TAIR|locus:2171790	226	RABA4a "RAB GTPase homolog A4A	0.892	0.880	0.615	1e-61
TAIR|locus:2152753	223	RABA4C "RAB GTPase homolog A4C	0.973	0.973	0.560	1.5e-60
TAIR|locus:2140079	224	RABA4B "RAB GTPase homolog A4B	0.937	0.933	0.575	2.4e-60
TAIR|locus:2168469	217	RABA2D "RAB GTPase homolog A2D	0.973	1.0	0.551	3.1e-60
UNIPROTKB|Q5ZJN2	216	RAB11A "Ras-related protein Ra	0.847	0.875	0.633	6.4e-60
UNIPROTKB|F2Z4D5	216	RAB11A "Ras-related protein Ra	0.847	0.875	0.633	6.4e-60

TAIR|locus:2169053 RABA5a "RAB GTPase homolog A5A" [Arabidopsis thaliana (taxid:3702)]

 Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
 Identities = 189/224 (84%), Positives = 200/224 (89%)

Query:     1 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
             MAFYSE+D++EDYLFK+VLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING
Sbjct:     1 MAFYSEDDKSEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60

Query:    61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
             KE+KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTF SIGRWLNELHTHSDMNV
Sbjct:    61 KEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFHSIGRWLNELHTHSDMNV 120

Query:   121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
             VTILVGNKSDLKD REV+TAEGKALAEAQGLFFMETSALDSSNV AAF+TVV EIYNILS
Sbjct:   121 VTILVGNKSDLKDLREVSTAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILS 180

Query:   181 RKVMISQELKQKDSSSF-NGKTVVLXXXXXXXXXXXXXXGCCSS 223
             RKVM SQEL ++D +S  NGK VV+              GCCSS
Sbjct:   181 RKVMSSQELNKQDPASLSNGKKVVIPSDGQGEFKKG---GCCSS 221

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2065858 RABA5d "RAB GTPase homolog A5D" [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 137/219 (62%), Positives = 164/219 (74%)

Query:     5 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
             S+++  E+YLFK+V+IGDSAVGKSNLL+R+AR+EF  +SK+TIGVEFQTQ M+I GKEVK
Sbjct:     3 SDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQNMEIEGKEVK 62

Query:    65 AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTIL 124
             AQIWDTAGQERFRAVTSAYYRGAVGAL+VYDISRR TF+S+GRWL+EL THSD  V  +L
Sbjct:    63 AQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRSTFESVGRWLDELKTHSDTTVARML 122

Query:   125 VGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVM 184
             VGNK DL+  R V+  EGKALAE +GLFFMETSALDS+NV  AF+ V+ +IY  +SRK +
Sbjct:   123 VGNKCDLESIRAVSVEEGKALAETEGLFFMETSALDSTNVKTAFEMVIRDIYTNISRKQL 182

Query:   185 ISQELKQKDSSSFNGKTVVLXXXXXXXXXXXXXXGCCSS 223
              S   K + S       V L               CCSS
Sbjct:   183 NSDTYKTELSMK---NRVSLVKDDNKSSTQGFGFSCCSS 218

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2041036 ARA4 [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 128/187 (68%), Positives = 160/187 (85%)

Query:     6 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKA 65
             +++R E+YLFK+V+IGDSAVGKSNLL R+AR+EF PNSK+TIGVEFQTQ M I+GKEVKA
Sbjct:     4 DDERGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKA 63

Query:    66 QIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV 125
             QIWDTAGQERFRAVTSAYYRGAVGAL+VYDI+R  TF+++GRWL+EL+THSD  V  +L+
Sbjct:    64 QIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLI 123

Query:   126 GNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMI 185
             GNK DL+  R V+  EGK+LAE++GLFFMETSALDS+NV  AF+ V+ EIY+ +SRK + 
Sbjct:   124 GNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLN 183

Query:   186 SQELKQK 192
             S   K++
Sbjct:   184 SDSYKEE 190

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005795 "Golgi stack" evidence=IDA

GO:0005798 "Golgi-associated vesicle" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0009408 "response to heat" evidence=IEP

GO:0048219 "inter-Golgi cisterna vesicle-mediated transport" evidence=TAS

TAIR|locus:2079631 RABA5b "RAB GTPase homolog A5B" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 130/185 (70%), Positives = 155/185 (83%)

Query:     6 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKA 65
             E+DR E+YLFK+VLIGDSAVGKSNLL+RF+RDEF  NSK+TIGVEFQTQ ++I GKEVKA
Sbjct:     4 EDDRGEEYLFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIEGKEVKA 63

Query:    66 QIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV 125
             QIWDTAGQERFRAVTSAYYRGA GAL+VYDI+R  TF+S+ RWL EL+TH D  V  +LV
Sbjct:    64 QIWDTAGQERFRAVTSAYYRGAFGALIVYDITRGDTFESVKRWLQELNTHCDTAVAQMLV 123

Query:   126 GNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMI 185
             GNK DL+D R V+  EGKALAE +GLFFMETSALD++NV  AF+ V+ EI+N +SRK++ 
Sbjct:   124 GNKCDLEDIRAVSVEEGKALAEEEGLFFMETSALDATNVDKAFEIVIREIFNNVSRKLLN 183

Query:   186 SQELK 190
             S   K
Sbjct:   184 SDAYK 188

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2171790 RABA4a "RAB GTPase homolog A4A" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 123/200 (61%), Positives = 158/200 (79%)

Query:     4 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEV 63
             Y +  +  DY+FKVVLIGDSAVGKS +LAR+ARDEF  +SK+TIGVEFQT+ + I+ K V
Sbjct:     7 YGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSV 66

Query:    64 KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI 123
             KAQIWDTAGQER+RAVTSAYYRGAVGA+LVYDI+RRQTFD I RWL EL  H+D N+V I
Sbjct:    67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVII 126

Query:   124 LVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
             L+GNKSDL D R + T + K  AE +GLFF+ETSA +++NV +AF TV+TEI+NI+++K 
Sbjct:   127 LIGNKSDLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKKS 186

Query:   184 MISQELKQKDS-SSFNGKTV 202
             + + E ++  +  S  GK +
Sbjct:   187 LAASEDQENGNPGSLAGKKI 206

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2152753 RABA4C "RAB GTPase homolog A4C" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 125/223 (56%), Positives = 162/223 (72%)

Query:     3 FYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKE 62
             F S  ++  DY+FKVVLIGDSAVGKS LLARF+R+EF   SK+TIGVEFQT+ ++I+ K 
Sbjct:     4 FQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEIDRKT 63

Query:    63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVT 122
             +KAQIWDTAGQER+RAVTSAYYRGAVGA+LVYDI++RQ+FD + RWL EL  H+D N+V 
Sbjct:    64 IKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVI 123

Query:   123 ILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
             +L+GNK+DL   R V T + K  A+ + LFFMETSALDS+NV  +F TV+TEIY I+S+K
Sbjct:   124 MLIGNKTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKK 183

Query:   183 VMISQELKQK--DSSSFNGKTVVLXXXXXXXXXXXXXXGCCSS 223
              +++ E  +   DSS   G  +V+              GCC +
Sbjct:   184 NLVANEEGESGGDSSLLQGTKIVVAGEETESKGK----GCCGT 222

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2140079 RABA4B "RAB GTPase homolog A4B" [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 122/212 (57%), Positives = 158/212 (74%)

Query:    12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
             DY+FKVVLIGDSAVGKS LLARFARDEF  +SK+TIGVEFQT+ + I  K +KAQIWDTA
Sbjct:    15 DYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSIKAQIWDTA 74

Query:    72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
             GQER+RAVTSAYYRGAVGA+LVYD+++R+TF+ I RWL EL  H+D N+V IL+GNKSDL
Sbjct:    75 GQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVIILIGNKSDL 134

Query:   132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQ 191
             +D R V T + K  AE +GLFF+ETSAL+++NV  +F T++T+IYN +++K + S E   
Sbjct:   135 EDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKNLAS-EGDS 193

Query:   192 KDSSSFNGKTVVLXXXXXXXXXXXXXXGCCSS 223
              +  S  GK +++               CC+S
Sbjct:   194 NNPGSLAGKKILIPGSGQEIPAKTST--CCTS 223

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019900 "kinase binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0032456 "endocytic recycling" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

TAIR|locus:2168469 RABA2D "RAB GTPase homolog A2D" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 123/223 (55%), Positives = 160/223 (71%)

Query:     1 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
             MA   E+D   DYLFK+VLIGDS VGK+N+L+RF R+EF   SKSTIGVEF T+ + + G
Sbjct:     1 MAHRVEQDY--DYLFKIVLIGDSGVGKTNILSRFTRNEFCLESKSTIGVEFATRTLQVEG 58

Query:    61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
             K VKAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++RQTFD++ RWL EL  H+D N+
Sbjct:    59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNI 118

Query:   121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
             V ++ GNK+DL   R V   +G+ LAE +GL F+ETSAL+++NV  AFQTV+ EIY+I+S
Sbjct:   119 VIMMAGNKADLNHLRSVAEEDGQTLAETEGLSFLETSALEATNVEKAFQTVLAEIYHIIS 178

Query:   181 RKVMISQELKQKDSSSFNGKTVVLXXXXXXXXXXXXXXGCCSS 223
             +K + +QE    +S+     T +               GCCS+
Sbjct:   179 KKALAAQEAAAANSAIPGQGTTI----NVEDTSGAGKRGCCST 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

UNIPROTKB|Q5ZJN2 RAB11A "Ras-related protein Rab-11A" [Gallus gallus (taxid:9031)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 121/191 (63%), Positives = 150/191 (78%)

Query:     8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
             D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQI
Sbjct:     5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64

Query:    68 WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127
             WDTAGQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGN
Sbjct:    65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124

Query:   128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQ 187
             KSDL+  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY I+S+K M   
Sbjct:   125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM--S 182

Query:   188 ELKQKDSSSFN 198
             + ++ D S  N
Sbjct:   183 DRRENDMSPSN 193

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0032154 "cleavage furrow" evidence=ISS

UNIPROTKB|F2Z4D5 RAB11A "Ras-related protein Rab-11A" [Bos taurus (taxid:9913)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 121/191 (63%), Positives = 150/191 (78%)

Query:     8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
             D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQI
Sbjct:     5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64

Query:    68 WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127
             WDTAGQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGN
Sbjct:    65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124

Query:   128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQ 187
             KSDL+  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY I+S+K M   
Sbjct:   125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM--S 182

Query:   188 ELKQKDSSSFN 198
             + ++ D S  N
Sbjct:   183 DRRENDMSPSN 193

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40522	RB11D_TOBAC	No assigned EC number	0.5656	0.9730	0.9774	N/A	no
Q9FGK5	RAA5A_ARATH	No assigned EC number	0.8571	0.9865	0.9954	yes	no
Q40520	RB11C_TOBAC	No assigned EC number	0.5610	0.9730	0.9774	N/A	no
Q5R9M7	RB11A_PONAB	No assigned EC number	0.5943	0.9282	0.9583	yes	no
Q40523	RB11A_TOBAC	No assigned EC number	0.5648	0.9461	0.9768	N/A	no
Q40521	RB11B_TOBAC	No assigned EC number	0.5733	0.9372	0.9631	N/A	no
Q40195	RB11E_LOTJA	No assigned EC number	0.5426	0.9775	1.0	N/A	no
Q40193	RB11C_LOTJA	No assigned EC number	0.5760	0.9417	0.9722	N/A	no
Q40191	RB11A_LOTJA	No assigned EC number	0.5882	0.9775	0.9646	N/A	no
Q40194	RB11D_LOTJA	No assigned EC number	0.5381	0.9775	1.0	N/A	no
P62491	RB11A_HUMAN	No assigned EC number	0.5943	0.9282	0.9583	yes	no
Q2TA29	RB11A_BOVIN	No assigned EC number	0.5896	0.9282	0.9583	yes	no
P36412	RB11A_DICDI	No assigned EC number	0.5566	0.9058	0.9439	yes	no
Q01111	YPT3_NICPL	No assigned EC number	0.5515	0.9775	1.0	N/A	no
Q5ZJN2	RB11A_CHICK	No assigned EC number	0.5943	0.9282	0.9583	yes	no
P22129	RB11B_DIPOM	No assigned EC number	0.5727	0.9327	0.9541	N/A	no
Q39572	YPTC6_CHLRE	No assigned EC number	0.5924	0.9282	0.9583	N/A	no
Q52NJ1	RB11A_PIG	No assigned EC number	0.5943	0.9282	0.9583	yes	no
Q39434	RB2BV_BETVU	No assigned EC number	0.5806	0.9327	0.9719	N/A	no
P62490	RB11A_CANFA	No assigned EC number	0.5943	0.9282	0.9583	yes	no
P62493	RB11A_RABIT	No assigned EC number	0.5943	0.9282	0.9583	yes	no
P62492	RB11A_MOUSE	No assigned EC number	0.5943	0.9282	0.9583	yes	no
P62494	RB11A_RAT	No assigned EC number	0.5943	0.9282	0.9583	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_kg.C_LG_XVI0002 hypothetical protein (224 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-111
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-97
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-90
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-82
pfam00071	162	pfam00071, Ras, Ras family	5e-82
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-74
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	9e-70
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-69
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-69
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-64
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-63
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	3e-63
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-62
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-60
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-59
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	9e-59
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-56
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-52
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	4e-50
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-49
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	6e-49
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-47
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-45
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-44
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-44
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	9e-43
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-42
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-42
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-42
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	6e-40
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-38
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-38
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-38
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	6e-38
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-37
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-37
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	8e-35
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-31
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-31
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-31
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	4e-31
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-30
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	8e-30
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	1e-29
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-28
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	3e-28
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	3e-28
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	8e-28
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	5e-27
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	8e-27
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-26
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-26
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-26
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	6e-26
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	3e-25
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	5e-25
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-24
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	7e-24
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-23
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	3e-22
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	5e-22
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	7e-22
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	8e-22
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	5e-21
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	6e-21
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-20
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	3e-20
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-18
pfam08477	116	pfam08477, Miro, Miro-like protein	7e-18
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	8e-18
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-17
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-16
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	4e-16
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-15
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-15
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	6e-15
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	7e-15
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	9e-15
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-14
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	4e-14
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-13
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-13
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	9e-13
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-12
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	4e-12
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-11
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	8e-11
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	1e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	4e-10
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-09
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-08
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-08
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-08
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	6e-08
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	6e-08
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-07
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	2e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-06
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	3e-06
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	3e-06
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	4e-06
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	2e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	1e-04
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	2e-04
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	3e-04
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	6e-04
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	0.001
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	0.003
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	0.004
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	0.004

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  314 bits (808), Expect = e-111
 Identities = 111/165 (67%), Positives = 136/165 (82%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK+VLIGDS VGKSNLL+RF R+EF  +SKSTIGVEF T+ + I+GK +KAQIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQER+RA+TSAYYRGAVGALLVYDI+++ TF+++ RWL EL  H+D N+V +LVGNKSDL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           +  R V T E KA AE  GL F+ETSALD +NV  AF+ ++TEIY
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  279 bits (717), Expect = 3e-97
 Identities = 92/164 (56%), Positives = 125/164 (76%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK++LIGDS VGKS+LL+RF   +F    KSTIGV+F+T+ ++++GK VK QIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR++TS+YYRGAVGALLVYDI+ R++F+++  WL EL  ++  NVV +LVGNKSDL++ 
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178
           R+V+  E +A AE  GL F ETSA  ++NV  AF+ +  EI   
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  265 bits (678), Expect = 1e-90
 Identities = 123/216 (56%), Positives = 159/216 (73%), Gaps = 5/216 (2%)

Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
           D   DYLFK+VLIGDS VGKSN+L+RF R+EF   SKSTIGVEF T+ + + GK VKAQI
Sbjct: 6   DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQI 65

Query: 68  WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127
           WDTAGQER+RA+TSAYYRGAVGALLVYDI++RQTFD++ RWL EL  H+D N+V ++ GN
Sbjct: 66  WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGN 125

Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQ 187
           KSDL   R V   +G+ALAE +GL F+ETSAL+++NV  AFQT++ EIY+I+S+K + +Q
Sbjct: 126 KSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQ 185

Query: 188 ELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCSS 223
           E          G T+ +     +     K+ GCCS+
Sbjct: 186 EAAANSGLPGQGTTINVA----DTSGNNKR-GCCST 216

Length = 216

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  241 bits (619), Expect = 3e-82
 Identities = 87/159 (54%), Positives = 124/159 (77%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VLIGDS VGK++LL RF  ++F  N KSTIGV+F+++ ++++GK+VK QIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR++TS+YYRGA GA+LVYD++ R++F+++ +WLNEL  ++  N+  ILVGNKSDL+D 
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173
           R+V+T E +  A+  GL F ETSA    NV  AF+++  
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  241 bits (617), Expect = 5e-82
 Identities = 88/162 (54%), Positives = 117/162 (72%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+VL+GD  VGKS+LL RF +++F      TIGV+F T+ ++++GK VK QIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135
           FRA+   YYRGA G LLVYDI+ R +F+++ +WL E+  H+D NV  +LVGNK DL+D R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 136 EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
            V+T EG+ALA+  GL FMETSA  + NV  AF+ +  EI  
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  221 bits (566), Expect = 3e-74
 Identities = 83/164 (50%), Positives = 122/164 (74%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGKS LL RF+ D F P+  STIG++F+ + ++++GK++K QIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +T++YYRGA+G +LVYDI+  ++F++I  W+  +  H+  +V  +LVGNK D+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           ++ R V+  EG+ALA   G+ F+ETSA  + NV  AF T+  +I
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  210 bits (536), Expect = 9e-70
 Identities = 74/162 (45%), Positives = 108/162 (66%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GDS+VGKS+++ RF ++EF  N +STIG  F TQ ++++   VK +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+R++   YYRGA  A++VYDI+  ++F+    W+ EL  H   N+V  L GNK+DL+  
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           R+V+T E +  A+  GL FMETSA    NV   F  +  ++ 
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  209 bits (534), Expect = 2e-69
 Identities = 89/164 (54%), Positives = 114/164 (69%)

Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAG
Sbjct: 3   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 62

Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
           QE FR++T +YYRGA GALLVYDI+RR+TF+ +  WL +   HS+ N+  +L+GNK DL+
Sbjct: 63  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
             REV+  EG+A A   GL FMETSA  +SNV  AF     EIY
Sbjct: 123 SRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 166

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  207 bits (530), Expect = 8e-69
 Identities = 83/163 (50%), Positives = 119/163 (73%)

Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           YLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK VK QIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
           QERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV  +LVGNK DL 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           D + V   E K  A+  G+ F+ETSA +++NV  AF T+  EI
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  196 bits (501), Expect = 2e-64
 Identities = 82/164 (50%), Positives = 111/164 (67%)

Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           Y+FK ++IGD  VGKS LL +F   +F  +   TIGVEF T+ +++NG+++K QIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
           QERFRAVT +YYRGA GAL+VYDI+RR T++ +  WL +    ++ N V  L+GNK+DL+
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
             R+VT  E K  A+  GL F+E SA    NV  AF     +IY
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIY 164

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  194 bits (496), Expect = 1e-63
 Identities = 86/162 (53%), Positives = 114/162 (70%), Gaps = 2/162 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K++LIGDS VGKS+LL RF  D F  +  STIGV+F+ + + ++GK+VK  IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
           RFR +TS+YYRGA G +LVYD++RR TFD++  WLNEL T+S   + V +LVGNK D K+
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKID-KE 119

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            REVT  EG+  A    + F+ETSA     V  AF+ +V +I
Sbjct: 120 NREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  193 bits (493), Expect = 3e-63
 Identities = 82/165 (49%), Positives = 113/165 (68%), Gaps = 1/165 (0%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D+LFK++LIGDS VGK+ ++ RF    F     +TIGV+F  + ++I GK VK QIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +T +YYR A GA++ YDI+RR +F+S+  W+ E+  +   NVV +L+GNK DL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 132 KDAREVTTAEGKALAEAQGLFF-METSALDSSNVTAAFQTVVTEI 175
           ++ REV   E   LAE  G+   +ETSA +SSNV  AF  + TE+
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  191 bits (487), Expect = 2e-62
 Identities = 82/154 (53%), Positives = 109/154 (70%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK ++IG +  GKS LL +F  ++F  +S  TIGVEF ++ +++ GK VK QIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR+VT +YYRGA GALLVYDI+ R++F+++  WL +  T +  ++V ILVGNK DL+D 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           REVT  E    A+  GL F+ETSAL   NV  AF
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAF 154

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  188 bits (479), Expect = 2e-60
 Identities = 86/211 (40%), Positives = 127/211 (60%), Gaps = 2/211 (0%)

Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTA 71
           Y F++++IGDS VGKS+LL RF    F   S  T+GV+F ++ ++I  G  +K Q+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSD 130
           GQERFR++T +YYR +VG LLV+DI+ R++F+ +  WL E  +H      V ILVG+K D
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120

Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELK 190
           L+  R+VT  E + LA+  G+ ++ETSA    NV  AF+ +  EIY  + R  + + +  
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGW 180

Query: 191 QKDSSSFNGKTVVLEGEKKEADAEPKKAGCC 221
               S F         E+    A P+K+ CC
Sbjct: 181 DGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  183 bits (467), Expect = 2e-59
 Identities = 64/161 (39%), Positives = 107/161 (66%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K+V +GD +VGK++++ RF  D F    ++TIG++F ++ M ++ K V+ Q+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR++  +Y R +  A++VYDI+ RQ+FD+  +W++++      +V+ +LVGNK+DL D 
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R+V+T EG+  A+     F+ETSA    NV   F+ +   +
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  183 bits (467), Expect = 9e-59
 Identities = 83/165 (50%), Positives = 109/165 (66%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+ K +K QIWDTA
Sbjct: 4   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQE FR++T +YYRGA GALLVYDI+RR+TF+ +  WL +   H++ N+  +L+GNK DL
Sbjct: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
              R V+T EG+  A+  GL FME SA  + NV  AF     +IY
Sbjct: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIY 168

Length = 210

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  176 bits (447), Expect = 3e-56
 Identities = 72/164 (43%), Positives = 112/164 (68%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D+LFK+VLIG++ VGK+ L+ RF +  F P   +TIGV+F  + ++I G+++K QIWDTA
Sbjct: 5   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR++T +YYR A   +L YDI+  ++F  +  WL E+  +++  V+TILVGNK DL
Sbjct: 65  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDL 124

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            + REV+    +  ++AQ ++++ETSA +S NV   F  +   +
Sbjct: 125 AERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  167 bits (424), Expect = 3e-52
 Identities = 80/186 (43%), Positives = 119/186 (63%), Gaps = 4/186 (2%)

Query: 9   RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
           R  D+LFK+++IGDS VGKS+LL RFA + F  +  +TIGV+F+ + ++ING+ VK QIW
Sbjct: 1   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIW 60

Query: 69  DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
           DTAGQERFR +TS YYRG  G ++VYD++  ++F ++ RWL E+  + D  V  +LVGNK
Sbjct: 61  DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDD-VCKVLVGNK 119

Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQE 188
           +D  + + V T +    A   G+   ETSA ++ NV   F   +TE+  +L  K     +
Sbjct: 120 NDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMF-NCITEL--VLRAKKDNLAK 176

Query: 189 LKQKDS 194
            +Q+  
Sbjct: 177 QQQQQQ 182

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  160 bits (406), Expect = 4e-50
 Identities = 71/162 (43%), Positives = 111/162 (68%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           +FK+++IG+S+VGK++ L R+A D F     ST+G++F+ + +  N K +K QIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133
           ER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   ILVGNK D++D
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V+   G+ LA+  G  F E SA ++ NV   F+ +V  I
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  158 bits (402), Expect = 2e-49
 Identities = 60/161 (37%), Positives = 94/161 (58%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FKVVL+G+  VGK++L+ R+  ++F    +ST    F  + ++I GK +   IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ A+   YYR A GA+LVYDI+   +F  + +W+ EL      N+  ++VGNK DL+  
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V+ +E +  A++ G    ETSA     +   F ++   +
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  158 bits (401), Expect = 6e-49
 Identities = 76/162 (46%), Positives = 107/162 (66%), Gaps = 1/162 (0%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKS-TIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           FKV+L+GDS VGK+ LL RF    F   S   T+G++F  + + ++G +VK QIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133
           ERFR+VT AYYR A   LL+YD++ + +FD+I  WL E+  ++  +VV +L+GNK+D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V   +G+ LA+  G+ FMETSA    NV  AF  V  E+
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  152 bits (386), Expect = 3e-47
 Identities = 67/154 (43%), Positives = 106/154 (68%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           F+++LIGDS VGK+ LL RF  +EF+ +  STIGV+F+ + ++++G +V+ QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R++ +T  YYR A G  LVYDIS  +++  I +W++++  ++   V  IL+GNK+D +  
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           R+V   +G  LA+  G+ F ETSA  + N+  +F
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESF 154

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  150 bits (379), Expect = 1e-45
 Identities = 89/224 (39%), Positives = 129/224 (57%), Gaps = 15/224 (6%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           M   S +    D  FK++LIGDS VGKS+LL  F       +   TIGV+F+ +++ + G
Sbjct: 1   MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGG 59

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGR-WLNELHTHS-DM 118
           K +K  IWDTAGQERFR +TS+YYR A G +LVYD++RR+TF ++   W  E+  +S + 
Sbjct: 60  KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ 119

Query: 119 NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178
           + V +LVGNK D +  R+V+  EG ALA+  G  F+E SA    NV   F+         
Sbjct: 120 DCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEE-------- 171

Query: 179 LSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222
           L+ K+M    L ++ S++   K  +L  ++K     P   GCCS
Sbjct: 172 LALKIMEVPSLLEEGSTA--VKRNIL--KQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  145 bits (368), Expect = 3e-44
 Identities = 60/164 (36%), Positives = 108/164 (65%), Gaps = 5/164 (3%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            KV+++GDS VGK++L+ ++   +F    K+TIG +F T+++ ++ + V  QIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKSD 130
           RF+++  A+YRGA   +LVYD++  ++F+S+  W +E    +      N   +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 131 LKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVT 173
           L++ R+V+T + +   +++G + + ETSA ++ NV  AF+T+  
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  145 bits (367), Expect = 4e-44
 Identities = 65/176 (36%), Positives = 111/176 (63%), Gaps = 19/176 (10%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN----------GK 61
           DYL K++ +GDS VGK+  L R+  ++F P   +T+G++F+ +++  N            
Sbjct: 2   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAF 61

Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS----- 116
            V  Q+WDTAGQERFR++T+A++R A+G LL++D++  Q+F ++  W+++L  H+     
Sbjct: 62  RVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENP 121

Query: 117 DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172
           D+    +L+GNK+DL D REV+  + + LA+  G+ + ETSA    NV  A +T++
Sbjct: 122 DI----VLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLL 173

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  141 bits (358), Expect = 9e-43
 Identities = 66/161 (40%), Positives = 92/161 (57%), Gaps = 2/161 (1%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++G   VGKS L  RF   EF      TI   ++ Q + ++G+     I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQ-IVVDGETYTLDILDTAGQEE 59

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKDA 134
           F A+   Y R   G +LVY I+ R++F+ I     ++    D   V I LVGNK DL++ 
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R+V+T EG+ALAE  G  F+ETSA  + N+   F T+V EI
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  142 bits (359), Expect = 1e-42
 Identities = 69/161 (42%), Positives = 109/161 (67%), Gaps = 1/161 (0%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           +V++IG   VGK++L+ RF  D F    KST+GV+F+ + +++ GK+++ QIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135
           F ++TSAYYR A G +LVYDI++++TFD + +W+  +  ++  +   +LVGNK D +  R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 136 EVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           E+T  +G+  A +  G+ F E SA D+ NV   F  +V +I
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 162

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  141 bits (356), Expect = 2e-42
 Identities = 64/167 (38%), Positives = 103/167 (61%), Gaps = 6/167 (3%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+L+GD  VGKS+L+ R+  ++F      TIGVEF  + ++++G  V  QIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVT----ILVGNKS 129
           ERFR++ + +YRG+   LL + +   Q+F ++  W  E   ++D+        +++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 130 DLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 175
           D+ + R+V+T E +A     G + + ETSA D++NV AAF+  V  +
Sbjct: 125 DIPE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  141 bits (356), Expect = 2e-42
 Identities = 68/163 (41%), Positives = 100/163 (61%), Gaps = 5/163 (3%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+++IGDS VGK+ L  RF    F   +++TIGV+F+ + ++I+G+ +K Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 75  RFR-AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLK 132
           RFR ++   YYR     + VYD++   +F S+  W+ E   HS  N V  ILVGNK DL+
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSS---NVTAAFQTVV 172
           +  +V T   +  A+A  +   ETSA D S   +V A F T+ 
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLA 165

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  135 bits (342), Expect = 6e-40
 Identities = 66/214 (30%), Positives = 111/214 (51%), Gaps = 20/214 (9%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQ 73
           FKV++IGD  VGK++++ R+    F  + K+TIGV+F  + ++      V+ Q+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN----VVTILVGNKS 129
           ERF  +T  YY+GAVGA++V+D++R  TF+++ +W  +L +   +     +  +L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 130 DLKDAREVTTAE--GKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQ 187
           DLK  R     E   +   E   + + ETSA ++ N+  A + +V    NIL     +  
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVK---NILKNDKGLQS 177

Query: 188 ELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCC 221
               +D    N   +  E    ++        CC
Sbjct: 178 PEPDED----NVIDLKQETTTSKSK------SCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  130 bits (330), Expect = 1e-38
 Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 5/165 (3%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           KV+ +G+S VGKS ++ R+    F      TIG+++  +K+ +  KEV+   +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS----DM-NVVTILVGNKSD 130
           +  V + +Y+   G LLVYD++ RQ+F+++  WL E+        +M N+V ++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           L   R V+  EG+  AE++G  + ETSA     V   FQT+ + I
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  132 bits (332), Expect = 3e-38
 Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 18/195 (9%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+V++GD  VGK+ LL R   DEF      TIG     + ++   + +K Q+WDTAGQE
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 75  RFRAVTSAYYRGAVGALLVYDI-SRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +R++   YYRGA G L+VYD   R  + +    WL EL   +  +V  +LVGNK DL D
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125

Query: 134 AREVTTAEGKALA------EAQGLF---------FMETSA--LDSSNVTAAFQTVVTEIY 176
            +  +      L                       +ETSA  L   NV   F+ ++ ++ 
Sbjct: 126 EQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185

Query: 177 NILSRKVMISQELKQ 191
             + + V+ ++  + 
Sbjct: 186 EEIEKLVLKNELRQL 200

Length = 219

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  129 bits (327), Expect = 3e-38
 Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 4/162 (2%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNS-KSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
            K+V++GD  VGKS LL R   ++      K      + T  ++ +GK  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 74  ERFRAVTSAYYRGAVGALLVYDI-SRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDL 131
           E + A+   YYR    +L V+DI       + I  +   E+  H++  V  ILVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173
           +DA+ + T      A+  G   +  SA    N+ +AF+ V  
Sbjct: 122 RDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  130 bits (327), Expect = 6e-38
 Identities = 66/160 (41%), Positives = 97/160 (60%), Gaps = 1/160 (0%)

Query: 9   RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
           +A DYL K +L+GDS VGK  +LA              +G++++T  + ++G+ VK Q+W
Sbjct: 1   KAYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLW 60

Query: 69  DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
           DT+GQ RF  +  +Y RGA G +LVYDI+ R +FD I RW+ E+  H+   V  ILVGN+
Sbjct: 61  DTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNR 119

Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
             L   R+V T + +A AE  G+ F E S L + N+T +F
Sbjct: 120 LHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF 159

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  128 bits (325), Expect = 1e-37
 Identities = 65/162 (40%), Positives = 93/162 (57%), Gaps = 2/162 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F  +   TI  +   ++++I+G+     I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLKD 133
            F A+   Y R   G LLVY I+ RQ+F+ I ++  + L      +V  +LVGNK DL+ 
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V+T EGK LA   G  F+ETSA +  NV  AF  +V EI
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  127 bits (322), Expect = 2e-37
 Identities = 65/162 (40%), Positives = 93/162 (57%), Gaps = 2/162 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI  +   ++++I+G+     I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLKD 133
            F A+   Y R   G LLVY I+ RQ+F+ I ++  + L      +V  +LVGNK DL++
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V+T EGK LA   G  F+ETSA +  NV  AF  +V EI
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  121 bits (304), Expect = 8e-35
 Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 3/156 (1%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN--GKEVKAQIWDTAGQ 73
           KV+++G+  VGKS+++ RF +  F  + K TIGV+F  +++ +    ++V+  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133
           E F A+T AYYRGA   +LV+  + R++F++I  W  ++      ++  +LV  K DL D
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD 120

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169
              +T  E +ALA+   L    TS  D  NVT  F+
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFE 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  113 bits (283), Expect = 1e-31
 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 5/161 (3%)

Query: 16  KVVLIGDSAVGKSNLLARFARD--EFYPNSKSTIGVEF--QTQKMDINGKEVKAQIWDTA 71
           +  ++GD AVGKS L+  F  D   F  N   T G +   +T  +      V+  I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSD 130
           GQE F  +    +       +VYD++   +F++  RW+N + THS  ++   +LVGNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
           L D REV  A+ +ALA+A  L F ETSA +     A F ++
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  113 bits (285), Expect = 1e-31
 Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 4/162 (2%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+ ++G  +VGKS+L  +F    F  +   TI   F ++ +   G+E   +I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE--LHTHSDMNVVTILVGNKSDLKD 133
           +  +   Y  G  G +LVY ++ R++F+ + + + +  L      +V  +LVGNKSDL  
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHM 120

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R+V+  EGK LAE+ G  F+E+SA ++ NV  AF+ ++ EI
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  112 bits (282), Expect = 2e-31
 Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 4/159 (2%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K++L+GDSAVGKS L+ RF  D + P   ST  +          GK +    WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135
           F+ + ++YY  A   +LV+D++R+ T+ ++ +W  EL  +    +  I+V NK DL D  
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDL-DPS 119

Query: 136 EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174
              T +    AE   L     SA D +NV   FQ  +  
Sbjct: 120 --VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  112 bits (280), Expect = 4e-31
 Identities = 54/142 (38%), Positives = 89/142 (62%)

Query: 37  DEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDI 96
           D F  N +STIG++F ++ + ++   V+ Q+WDTAGQERFR++  +Y R +  A++VYDI
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 97  SRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMET 156
           + RQ+F++  +W+ ++      +V+  LVGNK+DL D R+VT  EG   A+     F ET
Sbjct: 63  TNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHET 122

Query: 157 SALDSSNVTAAFQTVVTEIYNI 178
           SA    N+   F+ +  ++ N+
Sbjct: 123 SAKAGHNIKVLFKKIAAKLPNL 144

Length = 176

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  110 bits (276), Expect = 2e-30
 Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 2/159 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F  +   TI   + T++ +I+G+  +  I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQE 61

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKD 133
            F A+   Y R   G LLV+ ++ R +F+ + ++  ++    D +    ILVGNK+DL+ 
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172
            R+V+  EG+ LA    + ++ETSA D  NV  AF  +V
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLV 160

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  108 bits (271), Expect = 8e-30
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 3/159 (1%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           KV+++GD +VGK+ L+ RF +D F  N K+TIGV+F+ ++ ++ G     Q+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKDA 134
           F+ + S YYRGA   ++V+D++   + +   +WL +    +D + V + LVG K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 135 REVTTAEGKA--LAEAQGLFFMETSALDSSNVTAAFQTV 171
            +    E  A  LA      +   SAL   NV   F  V
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRV 160

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  107 bits (270), Expect = 1e-29
 Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 2/163 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            KV+++G   VGKS L  +F  DEF  + + T    ++ +K+ ++G+EV+  I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQLNILDTAGQE 59

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGR-WLNELHTHSDMNVVTILVGNKSDLKD 133
            + A+   Y+R   G LLV+ I+  ++F ++       L    D NV  +LVGNK DL+D
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
            R+V+  E   LAE  G+ ++ETSA   +NV   F  +V EI 
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIR 162

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  105 bits (263), Expect = 1e-28
 Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 16/170 (9%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEF---Y-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           K+ ++G S VGKS L  RF    F   Y PN +S       ++++ I+G++V  +I DT 
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-----SRQVTIDGEQVSLEIQDTP 55

Query: 72  GQERFRAV--TSAYYRGAVGALLVYDISRRQTFDSIGRWLN---ELHTHSDMNVVTILVG 126
           GQ++           R A G +LVY I+ R +FD + + L    E+    D  +  ILVG
Sbjct: 56  GQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKK-RDGEIPVILVG 114

Query: 127 NKSDLKDAREVTTAEGKALAEAQGLFFMETSA-LDSSNVTAAFQTVVTEI 175
           NK+DL  +R+V+T EG+ LA   G  F E SA  +   V   F  +  E+
Sbjct: 115 NKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREV 164

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  105 bits (263), Expect = 3e-28
 Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 8/191 (4%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           KVV++G  +VGK++L+ R+    F     ++TIG  F  ++M +  + V   IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL--- 131
           R+ A++  YYRGA  A++ YD++   +F+    W+ EL  + + +    L G KSDL   
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL-QNLEEHCKIYLCGTKSDLIEQ 120

Query: 132 -KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQE-- 188
            +  R+V   + +  A+       ETS+    NV   FQ V  +  +  + ++   +   
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQMNTEKGVD 180

Query: 189 LKQKDSSSFNG 199
           L QK +S F  
Sbjct: 181 LGQKKNSYFYS 191

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  105 bits (264), Expect = 3e-28
 Identities = 63/214 (29%), Positives = 114/214 (53%), Gaps = 9/214 (4%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK-EVKAQIWDTAGQ 73
            K+V++GD A GK++L+ RFA++ F  + K TIG++F ++++ + G   V  Q+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLN---ELHTHSDMNVVTILVGNKSD 130
           +    +   Y  GA    LVYDI+  Q+F+++  WL+   +++  S+     +LVGNK+D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI-LSRKVM-ISQE 188
           L+  R+VT  +    A+   +  +  SA     V   FQ +  E+  + LS+  +  SQ 
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELEQSQR 180

Query: 189 LKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222
           + + D S ++ +T + E   +      +    C+
Sbjct: 181 VVKADVSRYSERT-LREPVSRS--VNKRSNSMCA 211

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  103 bits (258), Expect = 8e-28
 Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 2/162 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +KVV++G   VGKS L  +F    F      TI  +F  ++++++      +I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLKD 133
           +F ++   Y +   G ++VY +  +QTF  I    ++ +       V  ILVGNK DL+ 
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            REV++AEG+ALAE  G  FMETSA   + V   F  +V ++
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  101 bits (254), Expect = 5e-27
 Identities = 68/179 (37%), Positives = 100/179 (55%), Gaps = 3/179 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F ++ F      TI   ++ Q   I+ +     I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQ-CVIDEETCLLDILDTAGQE 64

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKD 133
            + A+   Y R   G L VY I+ R +F+ I  +  ++    D + V  ILVGNK DL  
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQK 192
            R+V+T EG+ LA++ G+ F+ETSA    NV  AF  +V EI   L ++ M SQ+ K+K
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYL-KEDMPSQKQKKK 182

Length = 189

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  100 bits (251), Expect = 8e-27
 Identities = 56/163 (34%), Positives = 93/163 (57%), Gaps = 3/163 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F ++ F  +   TI   ++ Q ++I+G++   +I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQ-VEIDGRQCDLEILDTAGTE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLKD 133
           +F A+   Y +   G LLVY ++   + + +G    + L      NV  +LVGNK+DL+D
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 134 AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 175
            R+V+  +G +L++  G   F ETSA   +NV   F  +V +I
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  100 bits (251), Expect = 1e-26
 Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 15/170 (8%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD AVGK+ LL  +  ++F      T+   +      ++GK+V   +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVT-VDGKQVNLGLWDTAGQEE 60

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           +  +    Y      LL + +    +F+++  +W  E+  +   NV  ILVG K DL+D 
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCP-NVPIILVGTKIDLRDD 119

Query: 135 RE-----------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVV 172
                        +T  EG+ LA+  G   +ME SAL    +   F   +
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAI 169

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =   99 bits (250), Expect = 2e-26
 Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 17  VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF 76
           +V++GD AVGK+ LL  +  + F  +   T+   +      ++GK V+  +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVE-VDGKPVELGLWDTAGQEDY 59

Query: 77  RAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDAR 135
             +    Y      L+ + +    +F+++  +W  E+  H   NV  ILVG K DL++ +
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEV-KHFCPNVPIILVGTKLDLRNDK 118

Query: 136 E------------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVV 172
                        VT  +G+ALA+  G   ++E SAL    V   F+  +
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAI 168

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 99.5 bits (248), Expect = 4e-26
 Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 4/163 (2%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD  VGK+ L  +   + F      TI   ++ Q + ++G+    ++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH---THSDMNVVTILVGNKSDLK 132
           + A+   + R   G +LVY I+ R TF+ + R+  ++      S  +V  ++VGNK D  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
             REV+T EG ALA   G  F+E SA  + NV  AF T+V  +
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 98.1 bits (245), Expect = 6e-26
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +T+GVE        N  +++  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           +F  +   YY     A++++D++ R T+ ++  W  +L      N+  +L GNK D+KD 
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 119

Query: 135 R 135
           +
Sbjct: 120 K 120

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 96.7 bits (241), Expect = 3e-25
 Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKD 133
            + A+   Y R   G L V+ I+ R++F+ I  +  ++    D + V  +LVGNK DL  
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V+T +G+ LA++ G+ ++ETSA     V  AF T+V EI
Sbjct: 121 -RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 96.0 bits (239), Expect = 5e-25
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 2/162 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ Q ++++G++   +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGTE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
           +F A+   Y +   G +LVY I+ + TF+ +     ++    D  +V  ILVGNK DL+D
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V   +G+ LA   G  F+ETSA    NV   F  +V +I
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 93.4 bits (232), Expect = 5e-24
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI  +   ++++++ ++   +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLKD 133
           +F A+   Y +   G  LVY I+ +Q+F+ +     + L      +V  ILVGNK DL+D
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 134 AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 175
            R V+  EG+ LA   G   F+ETSA    NV   F  +V +I
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 94.4 bits (235), Expect = 7e-24
 Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 12/128 (9%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK++L+GD  VGK+  + R    EF      T+GVE    K   N   +   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY     A++++D++ R T+ ++  W      H D+     N+  +LVGNK 
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNW------HRDIVRVCENIPIVLVGNKV 123

Query: 130 DLKDAREV 137
           D+KD R+V
Sbjct: 124 DVKD-RQV 130

Length = 215

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 92.7 bits (230), Expect = 3e-23
 Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 48/194 (24%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEF---QTQKMDINGKEVKAQIWDTAG 72
           KVVL+GD  VGK++LL R+    F  ++ ST+G  F   Q    +I+       IWDTAG
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAFYLKQWGPYNIS-------IWDTAG 53

Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDL 131
           +E+F  + S Y RGA   +L YD+S  Q+ + +  R+L    T ++ + +  +VGNK DL
Sbjct: 54  REQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANE-DCLFAVVGNKLDL 112

Query: 132 -------------------KDAREVTTAEGKALAE---------------AQGLFFMETS 157
                              +D R+VT  + KA  +               A+ + F ETS
Sbjct: 113 TEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCF-ETS 171

Query: 158 ALDSSNVTAAFQTV 171
           A    NV   F+ +
Sbjct: 172 AKTGYNVDELFEYL 185

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 89.1 bits (221), Expect = 3e-22
 Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 6/164 (3%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS +  +F    F      TI   ++TQ   I+ +     I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQA 61

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHT---HSDMNVVTILVGNKSDL 131
            F A+   Y R   G ++ Y ++ R +F     +  EL T    ++ ++  +LVGNK DL
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEF-KELITRVRLTE-DIPLVLVGNKVDL 119

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           +  R+VTT EG+ LA      F ETSA     +  AF  +V EI
Sbjct: 120 EQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREI 163

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 87.9 bits (218), Expect = 5e-22
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 13/165 (7%)

Query: 18  VLIGDSAVGKSNLLARFARDEFYPNSK---STIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           V++G   VGKS+LL      E    S    +T   +      +++  +VK  + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVY--VKELDKGKVKLVLVDTPGLD 58

Query: 75  RF-----RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKS 129
            F       +     RGA   LLV D + R++ +        L       +  ILVGNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKL--LILRRLRKEGIPIILVGNKI 116

Query: 130 DLKDAREVTTAE-GKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173
           DL + REV      + LA+  G+   E SA     V   F+ ++ 
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 88.2 bits (219), Expect = 7e-22
 Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 10/170 (5%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+ L+GD+ +GK++L+ ++   EF      T+GV F  + + I G E+   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL---- 131
           F  +     + AV  L ++D++R+ T +SI  W  +    +    + ILVG K DL    
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK-TAIPILVGTKYDLFADL 120

Query: 132 -KDAREVTTAEGKALAEAQG--LFFMETSALDSSNVTAAFQTVVTEIYNI 178
             + +E  T + +  A+A    L F   S   S NV   F+ V+ +++++
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIF--CSTSHSINVQKIFKFVLAKVFDL 168

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 89.0 bits (221), Expect = 8e-22
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 21/163 (12%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+V++GD   GK+  + R    EF    + TIGVE        N  +++   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY     A++++D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW------HRDLCRVCENIPIVLCGNKV 127

Query: 130 DLKD----AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+K+    A++VT    K       L + E SA  + N    F
Sbjct: 128 DVKNRQVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPF 164

Length = 219

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 85.9 bits (213), Expect = 5e-21
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 16/173 (9%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K VL+GD AVGK++L+  +  + +      T    F    + ++GK V+ Q+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA 134
           F  +    Y      LL + +    +F +I  +W+ E+  H+      ILVG ++DL+  
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-KAPIILVGTQADLRTD 119

Query: 135 ------------REVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTE 174
                       + V+ +  KALAE  G   ++E SAL   N+   F T +  
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAILA 172

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 86.2 bits (214), Expect = 6e-21
 Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 15/180 (8%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D   K+V++GD   GK+ LL  +A+  F      T+   + T     NGK ++  +WDTA
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTA 60

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSD 130
           GQE +  +    Y      L+ Y +    + D++  +W  E+  H       +LVG K+D
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIVLVGLKTD 119

Query: 131 LKDARE------------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEIYN 177
           L+  +             VT  +G+++A++ G   ++E SA    NV   F   +    +
Sbjct: 120 LRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALS 179

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 84.1 bits (208), Expect = 2e-20
 Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 4/158 (2%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           ++VV+ G   VGKS+L+ RF +  F  +   TI   ++ Q +  +      QI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDS---IGRWLNELHTHSDMNVVTILVGNKSDL 131
           +F A+           +LVY I+ +Q+ +    I   + E+  ++   +  +LVGNK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169
             +REV+++EG ALA      FMETSA  + NV   FQ
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQ 158

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 85.1 bits (211), Expect = 3e-20
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 1/162 (0%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           ++VVL+GDS VGKS+L   F    +  ++    G +   + + ++G+E    ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNEL-HTHSDMNVVTILVGNKSDLKD 133
               +  +  +     ++VY ++ R +F+       +L       ++  ILVGNKSDL  
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           +REV+  EG+A A      F+ETSA    NV   F+ +V ++
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQV 162

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 79.1 bits (195), Expect = 3e-18
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 3/156 (1%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           ++V +G + VGK+ L+ RF  D F P  + T+  E  +++ ++ G +V   I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTILVGNKSDLKDA 134
           F A+     +      LVY +   ++F+ + R   E+     D  V  ++VGNK D    
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 135 REVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQ 169
           R+V  A+  +  E      F+E SA D+ NVT  F+
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFK 155

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 75.9 bits (187), Expect = 7e-18
 Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           KVV+IGD   GKS+LL++    EF P      G       ++++G      IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGR---WLNELHTHSDMNVVTILVGNK 128
            +     + + A   LLVYD++ R++ + + R   WL  L       +  ILVGNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 77.5 bits (191), Expect = 8e-18
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 20/171 (11%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI--NGKEVKAQIWDTAGQ 73
           K+V++GD A GK+ LL  F++D+F      T+   F+    DI  +GK+V+  +WDTAGQ
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 59

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLK 132
           E +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL+
Sbjct: 60  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 118

Query: 133 D----ARE--------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQT 170
           +     RE        V   EG+A+AE  G F ++E SA     V   F+ 
Sbjct: 119 NDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEM 169

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 77.0 bits (189), Expect = 2e-17
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 13/154 (8%)

Query: 20  IGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV 79
           +GD   GK+  + R    EF     +T+GVE        N   ++  +WDTAGQE+F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 80  TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKSDLKDA 134
              YY     A++++D++ R T+ ++  W      H D+     N+  +L GNK D+KD 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNW------HRDLVRVCENIPIVLCGNKVDVKD- 113

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           R+V  A+       + L + + SA  + N    F
Sbjct: 114 RKV-KAKSITFHRKKNLQYYDISAKSNYNFEKPF 146

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 73.7 bits (181), Expect = 2e-16
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 14/167 (8%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K V +GD AVGK+ +L  +  + F  +   T+   F +  + ++G  V   +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 61

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    YRGA   LL + +  + +++++  +W+ EL  H    V  +LVG K DL+D 
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELR-HYAPGVPIVLVGTKLDLRDD 120

Query: 134 ---------AREVTTAEGKALAEAQGL-FFMETSALDSSNVTAAFQT 170
                    A  +TTA+G+ L +  G   ++E S+    NV A F  
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDA 167

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 73.0 bits (179), Expect = 4e-16
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 12/163 (7%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           KVV++GD A GK++LL  F R  F    + T+  E     + ++G  V+  +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           F  + S  Y      +L + +    + +++  +WL E+  H    V  +LV  K DL++ 
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCP-GVKLVLVALKCDLREP 119

Query: 135 REVTTAEGKALAEAQGLF---------FMETSALDSSNVTAAF 168
           R         ++  +GL          ++E SA  +  V  AF
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAF 162

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 71.7 bits (176), Expect = 1e-15
 Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 16/162 (9%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+VL+GDS  GK+ LL  FA+D F  N   T+  E  T   +++ + ++  +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDL--- 131
           +  V    Y  +   L+ +DISR +T DS+  +W  E+      N   +LVG KSDL   
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCP-NTPVLLVGCKSDLRTD 120

Query: 132 ---------KDAREVTTAEGKALAEAQG-LFFMETSALDSSN 163
                    K    V+  +G+ LA+  G   ++E SA  S N
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSEN 162

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 71.6 bits (175), Expect = 1e-15
 Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 16/162 (9%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GDS  GK+ LL  FA+D F  N   T+  E  T   +I+ + ++  +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGR-WLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  V    Y  +   L+ +DISR +T DS+ + W  E+      N   +LVG KSDL+  
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 124

Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSN 163
                         V+  +G  +A+  G   ++E SAL S N
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 70.0 bits (171), Expect = 6e-15
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 16/181 (8%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  + F      T+   +  Q   ++G+ V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQ-TAVDGRTVSLNLWDTAGQEE 63

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           +  + +  Y      ++ + I+   +++++  +W  E+  H   NV  +LVG K DL++ 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRND 122

Query: 135 REV------------TTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILSR 181
            +             T  +G ALA+    + ++E SAL+   V   F   V  + N    
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPI 182

Query: 182 K 182
           K
Sbjct: 183 K 183

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 69.9 bits (171), Expect = 7e-15
 Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 20/169 (11%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK++LL  F   EF      T+   + T    ++GK V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQEE 61

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI----GRWLNELHTHSDMNVVTILVGNKSDL 131
           +  +    Y  A   L+ + I    T DS+     +W+ E+  +   NV  ILVG K DL
Sbjct: 62  YERLRPLSYSKAHVILIGFAID---TPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDL 117

Query: 132 KD---ARE-------VTTAEGKALAEAQGL-FFMETSALDSSNVTAAFQ 169
           +    A+        V   + K +A A G   +ME SAL    V   F+
Sbjct: 118 RQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFE 166

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 68.9 bits (169), Expect = 9e-15
 Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 14/166 (8%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM-DINGKEVKAQIWDTAGQE 74
           K++L+G   VGK++L  +   ++F  +  ST G+  Q  K+     K+++  +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 75  RFRAV------TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
            + A       + + Y      LLV+D+        +  WL ++     ++ V ILVG  
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAFGGVSPV-ILVGTH 115

Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174
            D     ++          A        S  +   +    + +  E
Sbjct: 116 IDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAIAKE 161

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 68.5 bits (168), Expect = 1e-14
 Identities = 52/164 (31%), Positives = 72/164 (43%), Gaps = 20/164 (12%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           ++VLIGD  VGKS+L+     +EF  N      +   T   D+  + V   I DT+ + +
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRV--LPEITIPADVTPERVPTTIVDTSSRPQ 61

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA 134
            RA  +A  R A    LVY + R  T + I  +WL  +     + V  ILVGNKSDL+D 
Sbjct: 62  DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRR-LGVKVPIILVGNKSDLRDG 120

Query: 135 REVTTAEGKALAEAQGLFFM----------ETSALDSSNVTAAF 168
                 E +       L  M          E SA    NV+  F
Sbjct: 121 SSQAGLEEEM------LPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 67.1 bits (164), Expect = 4e-14
 Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 22/170 (12%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE- 74
           K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 61

Query: 75  --RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDL 131
             R R ++  Y +  V  L+ + +    +F+++  +W  E+  H   N   ILVG K DL
Sbjct: 62  YDRLRPLS--YPQTDV-FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDL 117

Query: 132 KDARE------------VTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
           +D ++            +T  +G A+A E   + ++E SAL    +   F
Sbjct: 118 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           +++++G    GK+ +L +    E    +  TIG  F  + ++   K VK  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEV-VTTIPTIG--FNVETVEY--KNVKFTVWDVGGQDK 55

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
            R +   YY    G + V D S R+  +     L++L    ++    +L+  NK DL  A
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGA 115

Query: 135 REVTT 139
              + 
Sbjct: 116 LTESE 120

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 66.6 bits (162), Expect = 2e-13
 Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 16/162 (9%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD+  GK+ LL  FA+D  YP S      E  T   +I+   ++  +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDN-YPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNK----SD 130
           +  V    Y  +   L+ +DISR +T DS+  +W  E       N   +LVG K    +D
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-NAKLVLVGCKLDMRTD 120

Query: 131 LKDARE--------VTTAEGKALAEAQG-LFFMETSALDSSN 163
           L   RE        VT  +G  LA   G + ++E S+  S N
Sbjct: 121 LSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSEN 162

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 64.8 bits (158), Expect = 9e-13
 Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 13/170 (7%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +++V++G S VGK+ +++RF    F      TI  +F  +   I G+  +  I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 75  RFRAVTS-AYYRGAVGALLVYDISRRQTFDSIGRWLNEL---------HTHSDMNVVTIL 124
            F A+   +   G V  +LV+ +  R++F+ + R   ++          T  ++ +  ++
Sbjct: 60  PFPAMRRLSILTGDV-FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVI 118

Query: 125 VGNKSDLKDAREVTTAE-GKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173
            GNK+D    REV   E  + +   +   + E SA  +SN+   F+ + +
Sbjct: 119 CGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 11/138 (7%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +    E    +  TIG  F  + +      VK  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIV-TTIPTIG--FNVETVTYKN--VKFTVWDVGGQE 69

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
             R +   Y+      + V D + R   +     L+ L    ++    +L+  NK DL  
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG 129

Query: 134 AREVTTAEGKALAEAQGL 151
           A  ++ AE   + E  GL
Sbjct: 130 A--MSEAE---IRELLGL 142

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 63.2 bits (153), Expect = 4e-12
 Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 17/180 (9%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+VL+GD   GK+ +L   A+D  YP +      E  T  ++   + V+  +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKD-CYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 73

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDS-IGRWLNELHTHSDMNVVTILVGNKSDLK-- 132
           +  V    Y  +   LL +DISR + FDS + +W  E+  +   +   +L+G K+DL+  
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCP-STRILLIGCKTDLRTD 132

Query: 133 ----------DAREVTTAEGKALAEAQGL-FFMETSALDSS-NVTAAFQTVVTEIYNILS 180
                         ++  +G A+A+  G   ++E SA  S  ++ + F+T      N LS
Sbjct: 133 LSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLS 192

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 15/124 (12%)

Query: 17  VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQ-----IWDTA 71
           + L+G    GK+ L+   A  +F  ++  T+G          N ++V        +WD  
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGF---------NMRKVTKGNVTIKVWDLG 52

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSD 130
           GQ RFR++   Y RG    + V D + R+  +     L++L     +  + +LV GNK+D
Sbjct: 53  GQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKND 112

Query: 131 LKDA 134
           L  A
Sbjct: 113 LPGA 116

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 58.5 bits (141), Expect = 8e-11
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 16/176 (9%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +A D F P        +     + + GK+    ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F ++   W+ EL  ++  NV  +L+G + DL+D
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPYLLIGTQIDLRD 118

Query: 134 ------------AREVTTAEGKALAEAQGL-FFMETSALDSSNVTAAFQTVVTEIY 176
                        + +T  +G+ LA+  G   ++E SAL    +   F   +  I 
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 24/191 (12%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI---NGKEVKAQIWDTA 71
             +V++G  + GK+ +L R   +EF  N+  T G  F T+K+ +   N K V    WD  
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVG 60

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH----THSDMNVVTILVGN 127
           GQE+ R +  +Y R   G + V D    +  +       ELH       +  V  +++ N
Sbjct: 61  GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAK---TELHKITKFSENQGVPVLVLAN 117

Query: 128 KSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSNVTAAFQTVVTEIYN-ILSR 181
           K DL +A  V+  E K LA      +         A+    +    +    ++Y  IL R
Sbjct: 118 KQDLPNALPVSEVE-KLLALHELSSSTPWHVQPACAIIGEGLQEGLE----KLYEMILKR 172

Query: 182 KVMISQELKQK 192
           + M+ Q+ K++
Sbjct: 173 RKMLRQQKKKR 183

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 11/162 (6%)

Query: 16  KVVLIG-DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +V+L+G DSA GKS LL +    E       T+G  F  + + +    +   +WD  GQE
Sbjct: 1   QVLLLGLDSA-GKSTLLYKLKHAELVTTI-PTVG--FNVEMLQLEKH-LSLTVWDVGGQE 55

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLKD 133
           + R V   Y     G + V D S     D   + L   L       V  +L+ NK DL  
Sbjct: 56  KMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115

Query: 134 A---REVTTA-EGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
           A    E+T   + K     +  +    SA+    +  AF+ +
Sbjct: 116 ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL 157

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 12/130 (9%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIG--VEFQTQKMDINGKEVKAQIWDTAG 72
           +KV+++G    GK+ +L +F   E   ++  TIG  VE      +I  K ++  +WD  G
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVV-HTSPTIGSNVE------EIVYKNIRFLMWDIGG 68

Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDL 131
           QE  R+  + YY      +LV D + R+        L ++  H D+    +LV  NK DL
Sbjct: 69  QESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128

Query: 132 KDAREVTTAE 141
           K A  +T AE
Sbjct: 129 KGA--MTPAE 136

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 16/167 (9%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 61

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + +    +F+++  +W+ E+  H       +LVG + DL+D 
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 120

Query: 134 -----------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                       + +T   G+ LA + + + ++E SAL    +   F
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 14/130 (10%)

Query: 16  KVVLIGDSAVGKSNLLARFA-----RDEFYPNSKSTIGVEFQTQKMDINGKEV----KAQ 66
           K+V+IG    GK+  +   +       E   +S S  G    T  MD    E+       
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVH 71

Query: 67  IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVG 126
           ++ T GQERF+ +     RGAVGA+++ D SR  TF +    + +  T    N + ++V 
Sbjct: 72  LFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEE--IIDFLTSR--NPIPVVVA 127

Query: 127 -NKSDLKDAR 135
            NK DL DA 
Sbjct: 128 INKQDLFDAL 137

Length = 187

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           +++++G  A GK+ +L +    E    +  TIG   +T    +  K +   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET----VTYKNISFTVWDVGGQDK 69

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDA 134
            R +   YY    G + V D + R   D     L+ +    ++ + V ++  NK DL DA
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 35/169 (20%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGV--------------EFQTQKMDINGK 61
           +V+++GDS VGKS+L+    +         TIG                  + K D   +
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSE-R 81

Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH---THS-- 116
           +   ++WD +G ER++   S +Y    G + V+D+S+R+T  S+ +W +E+    T S  
Sbjct: 82  DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAP 141

Query: 117 -------DMNVVTILVGNKSDLKDAREVTTAEGKAL-------AEAQGL 151
                   + V  I++GNK+D+   +E T      L        E QGL
Sbjct: 142 LGSGGPGGLPVPYIVIGNKADIA-PKEGTRGSSGNLVDAARQWVEKQGL 189

Length = 334

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 50.5 bits (121), Expect = 6e-08
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 8/121 (6%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTI-GVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +++++G  A GK+ +L +    +    S +TI  V F  +   +  K VK  +WD  GQ+
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVET--VTYKNVKFNVWDVGGQD 64

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   YY G  G + V D + R   D   + L+ +    +M    +LV  NK DL D
Sbjct: 65  KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124

Query: 134 A 134
           A
Sbjct: 125 A 125

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           +VV +G    GK+ +L +  +DEF      TIG   +T    +  K +K  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVET----VEYKNLKFTIWDVGGKHK 55

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
            R +   YY      + V D S R         L +L T  ++    +L+  NK D+  A
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115

Query: 135 REV 137
             V
Sbjct: 116 LSV 118

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN--GKEVKA---QIWDT 70
           KV+++GDS VGKS+L+    +++   N   T+G     +         E K    ++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 71  AGQ----ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE 111
            G     E  ++  + +Y    G + V+D++ +++  ++ RW  E
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLE 106

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query: 17  VVLIGDSAVGKSNLLAR----FARD-EFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           V+++G    GK+  L +    F+++ +    SK T  V      +++     +   WD  
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGK--ARLMFWDLG 59

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSD 130
           GQE  R++   YY  + G + V D + R+ F+       ++  +  +  V +LV  NK D
Sbjct: 60  GQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQD 119

Query: 131 LKDA---REVTTAEGKALAE--AQGLFFMETSALDSSNV 164
           L DA    E+       +A    +       SAL+   V
Sbjct: 120 LPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGV 158

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           +++++G  A GK+ +L +    E    +  TIG   +T    +  K +K  +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEVV-TTIPTIGFNVET----VEYKNLKFTMWDVGGQDK 73

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
            R +   YY+   G + V D + R+        L  + +  ++    +LV  NK DL +A
Sbjct: 74  LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA 133

Query: 135 REVT 138
              T
Sbjct: 134 MSTT 137

Length = 182

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 29/151 (19%)

Query: 16  KVVLIG-DSAVGKSNLLARFARDEFY-------PNSKS-TIGVEFQTQKMDINGKEVKAQ 66
           K+V +G D+A GK+ LL     D          P S+  TIG              VK  
Sbjct: 21  KIVFLGLDNA-GKTTLLHMLKDDRLAQHVPTLHPTSEELTIG-------------NVKFT 66

Query: 67  IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV- 125
            +D  G E+ R V   Y+    G + + D +  + F      L+ L    ++  V IL+ 
Sbjct: 67  TFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILIL 126

Query: 126 GNKSDLKDAREVTTAEGKALAEAQGLFFMET 156
           GNK D   A        + L EA GL+   T
Sbjct: 127 GNKIDKPGA-----VSEEELREALGLYGTTT 152

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 12/127 (9%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           +++++G  A GK+ +L +    E    +  TIG   +T    +  K +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH---THSDMNVVTILV-GNKSDL 131
            R +   Y++   G + V D + R   D +    +ELH      ++    +LV  NK DL
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130

Query: 132 KDAREVT 138
            +A    
Sbjct: 131 PNAMNAA 137

Length = 181

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           +++++G  A GK+ +L +    E    +  TIG   +T    +  K +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHT---HSDMNVVTILV-GNKSDL 131
            R +   Y++   G + V D + R   + IG    EL       ++    +LV  NK DL
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELQRMLNEDELRDAVLLVFANKQDL 113

Query: 132 KDA---REVT 138
            +A    EVT
Sbjct: 114 PNAMSAAEVT 123

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 15/132 (11%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQK---MDINGKEVKAQIWDTAG 72
           +++L+G    GK+ +L + A ++        I     TQ     ++     K  +WD  G
Sbjct: 17  RILLLGLDNAGKTTILKQLASED--------ISHITPTQGFNIKNVQADGFKLNVWDIGG 68

Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDL 131
           Q + R     Y+      + V D + R+ F+  G+ L EL     +  V +LV  NK DL
Sbjct: 69  QRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDL 128

Query: 132 ---KDAREVTTA 140
                A EV  A
Sbjct: 129 LTAAPAEEVAEA 140

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 48/198 (24%), Positives = 76/198 (38%), Gaps = 46/198 (23%)

Query: 14  LFKVVLIGDSAVGKSNLL-ARFARD-----EFYPNSKSTIGV---------EFQTQKMDI 58
             K V++GD+AVGK+ L+ AR         +       T+             +  +  +
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 59  NGKEVKAQIWDTAG----QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGR-WLNELH 113
           +G  V  ++WDT G      RF     AY R  V  LL + I+   +  ++   W  E+ 
Sbjct: 62  DGVSVSLRLWDTFGDHDKDRRF-----AYGRSDV-VLLCFSIASPNSLRNVKTMWYPEIR 115

Query: 114 THSDMNVVTILVGNKSDL-------------------KDAREVTTAEGKALAEAQGLFFM 154
                 V  ILVG K DL                   K+A  +    G+A+A+  G+ + 
Sbjct: 116 HFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYY 174

Query: 155 ETSALDSSNVTAAFQTVV 172
           ETS +    V   F   +
Sbjct: 175 ETSVVTQFGVKDVFDNAI 192

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 25/139 (17%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD----- 69
            +V ++G   VGK+ ++ +F   EF      T         + ++G+     I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 70  ----TAGQE----RFRAV--TSAYYRGAVGALLVYDISRRQTFD---SIGRWLNELHTHS 116
               TAGQE    RFR +  + A+       +LVYDI    +F     + + + E     
Sbjct: 61  RYPGTAGQEWMDPRFRGLRNSRAF-------ILVYDICSPDSFHYVKLLRQQILETRPAG 113

Query: 117 DMNVVTILVGNKSDLKDAR 135
           +     ++VGNK D +  R
Sbjct: 114 NKEPPIVVVGNKRDQQRHR 132

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           +++++G    GK+ +L R    E    +  TIG   +T    +  K +K Q+WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVET----VTYKNLKFQVWDLGGQTS 55

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVGNKSDL 131
            R     YY      + V D + R   D +G   +ELH   +     + V ++  NK D+
Sbjct: 56  IRPYWRCYYSNTDAIIYVVDSTDR---DRLGISKSELHAMLEEEELKDAVLLVFANKQDM 112

Query: 132 KDA 134
             A
Sbjct: 113 PGA 115

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 12/123 (9%)

Query: 17  VVLIGDSAVGKSNLLARFARDEFYPNSKSTIG---VEFQTQKMDINGKEVKAQIWDTAGQ 73
           ++ +G    GK+ L++     E       T+G    + +  K ++        I+D  G 
Sbjct: 2   LLTVGLDNAGKTTLVSALQG-EIPKKVAPTVGFTPTKLRLDKYEVC-------IFDLGGG 53

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLK 132
             FR +   YY  A G + V D S       +   L EL  H  ++   ILV  NK D K
Sbjct: 54  ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK 113

Query: 133 DAR 135
           +A 
Sbjct: 114 NAL 116

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKS-TIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
            +++++G    GK+ +L +F  ++   ++ S T+G  F  + ++ NG   K  IWD  GQ
Sbjct: 15  MRILMLGLDNAGKTTILKKFNGEDI--STISPTLG--FNIKTLEYNG--YKLNIWDVGGQ 68

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLK 132
           +  R+    Y+      + V D S R   +   R L +L     +   T+L+  NK DL 
Sbjct: 69  KSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLP 128

Query: 133 DA 134
            A
Sbjct: 129 GA 130

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 42/174 (24%), Positives = 60/174 (34%), Gaps = 47/174 (27%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKS-----------TIGVEFQTQKMDINGKEV 63
            KVV+IG   VGKS+LL      +     ++            I  +      ++NG  V
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRD-----RAIVTDIAGTTRDVIEEDI-----NLNGIPV 267

Query: 64  KAQIWDTAGQ-------ERF---RAVTSAYYRGAVGALLVYDISRRQT-FDSIGRWLNEL 112
           +  + DTAG        ER    RA  +     A   L V D S+     D        L
Sbjct: 268 R--LVDTAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDASQPLDKEDL------AL 317

Query: 113 HTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166
                     I+V NK+DL         E ++   A G   +  SA     + A
Sbjct: 318 IELLPKKKPIIVVLNKADLVSK-----IELESEKLANGDAIISISAKTGEGLDA 366

Length = 454

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 13/165 (7%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+ ++G+   GKS L+ R+    +    +S  G  F+ +++ ++G+     I D  G   
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQL-ESPEGGRFK-KEVLVDGQSHLLLIRDEGGA-- 57

Query: 76  FRAVTSAYYRGAVGA-LLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDL-- 131
                 A + G V A + V+ +    +F ++ R  ++L ++ ++  +  ILVG +  +  
Sbjct: 58  ----PDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAISA 113

Query: 132 KDAREVTTAEGKAL-AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            + R +  A  + L A+ +   + ET A    NV   FQ    +I
Sbjct: 114 SNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.98
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.98
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.98
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.98
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
PTZ00099	176	rab6; Provisional	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.94
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
PRK03003	472	GTP-binding protein Der; Reviewed	99.93
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
KOG1673	205	consensus Ras GTPases [General function prediction	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
PRK04213	201	GTP-binding protein; Provisional	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.9
PRK00093	435	GTP-binding protein Der; Reviewed	99.9
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.9
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.9
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.9
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.9
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.88
PRK15494	339	era GTPase Era; Provisional	99.88
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.88
cd00881	189	GTP_translation_factor GTP translation factor fami	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
COG1160	444	Predicted GTPases [General function prediction onl	99.88
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.88
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.87
PRK12296	500	obgE GTPase CgtA; Reviewed	99.87
PRK11058	426	GTPase HflX; Provisional	99.87
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.87
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.87
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.86
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.86
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.86
PRK12298	390	obgE GTPase CgtA; Reviewed	99.86
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.86
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.86
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.85
PRK00089	292	era GTPase Era; Reviewed	99.85
PRK05306	787	infB translation initiation factor IF-2; Validated	99.85
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.84
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.84
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.83
COG1159	298	Era GTPase [General function prediction only]	99.83
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.83
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.82
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.82
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.82
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.82
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.81
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.81
PRK12317	425	elongation factor 1-alpha; Reviewed	99.81
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.81
COG1160	444	Predicted GTPases [General function prediction onl	99.81
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.81
COG0486	454	ThdF Predicted GTPase [General function prediction	99.8
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.8
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.8
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.8
PRK10218	607	GTP-binding protein; Provisional	99.79
COG2229	187	Predicted GTPase [General function prediction only	99.79
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.79
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.79
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.79
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.78
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.78
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.78
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.77
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.76
PRK12736	394	elongation factor Tu; Reviewed	99.76
COG2262	411	HflX GTPases [General function prediction only]	99.76
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.75
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.75
PRK12735	396	elongation factor Tu; Reviewed	99.75
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.75
COG0218	200	Predicted GTPase [General function prediction only	99.75
COG1084	346	Predicted GTPase [General function prediction only	99.74
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.74
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.74
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.74
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.73
CHL00071	409	tufA elongation factor Tu	99.72
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.71
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.71
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.71
COG1163	365	DRG Predicted GTPase [General function prediction	99.71
PLN00043	447	elongation factor 1-alpha; Provisional	99.7
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.69
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.69
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.69
PRK00049	396	elongation factor Tu; Reviewed	99.69
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.69
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.68
PLN03126	478	Elongation factor Tu; Provisional	99.67
PTZ00141	446	elongation factor 1- alpha; Provisional	99.67
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.67
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.66
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.66
PLN03127	447	Elongation factor Tu; Provisional	99.66
COG0536	369	Obg Predicted GTPase [General function prediction	99.65
KOG1145	683	consensus Mitochondrial translation initiation fac	99.65
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.64
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.64
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.64
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.64
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.64
PRK13351	687	elongation factor G; Reviewed	99.63
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.63
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.62
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.62
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.61
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.6
COG3596	296	Predicted GTPase [General function prediction only	99.6
PRK12739	691	elongation factor G; Reviewed	99.58
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.58
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.57
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.57
PRK09866	741	hypothetical protein; Provisional	99.55
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.55
PRK00007	693	elongation factor G; Reviewed	99.55
PRK09602	396	translation-associated GTPase; Reviewed	99.54
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.53
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.52
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.51
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.5
PRK14845	1049	translation initiation factor IF-2; Provisional	99.49
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.49
PRK12740	668	elongation factor G; Reviewed	99.48
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.48
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.48
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.48
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.47
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.47
KOG0090	238	consensus Signal recognition particle receptor, be	99.46
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.45
PTZ00258	390	GTP-binding protein; Provisional	99.44
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.43
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.43
PRK07560	731	elongation factor EF-2; Reviewed	99.41
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.4
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.4
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.39
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.36
PTZ00416	836	elongation factor 2; Provisional	99.36
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.36
PRK13768	253	GTPase; Provisional	99.35
PRK09601	364	GTP-binding protein YchF; Reviewed	99.34
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.33
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.32
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.3
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.3
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.29
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.29
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.28
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.28
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.26
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.26
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.25
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.23
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.21
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.2
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.18
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.17
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.16
KOG0410	410	consensus Predicted GTP binding protein [General f	99.15
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.15
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.15
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.14
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.14
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.14
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.1
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.09
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.05
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.05
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.03
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.0
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.98
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.94
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.93
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.93
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.92
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.92
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.9
PRK12289	352	GTPase RsgA; Reviewed	98.9
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.88
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.88
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.88
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.86
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.85
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.84
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.83
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.81
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.81
PRK00098	298	GTPase RsgA; Reviewed	98.79
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.78
KOG1143	591	consensus Predicted translation elongation factor	98.78
PRK12288	347	GTPase RsgA; Reviewed	98.77
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.72
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.71
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.69
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.68
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.68
COG3523	1188	IcmF Type VI protein secretion system component Va	98.68
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.67
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.66
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.66
KOG2486	320	consensus Predicted GTPase [General function predi	98.65
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.64
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.63
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.63
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.6
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.6
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.58
COG1161	322	Predicted GTPases [General function prediction onl	98.55
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.53
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.52
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.52
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.47
PRK12288	347	GTPase RsgA; Reviewed	98.46
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.43
KOG0460	449	consensus Mitochondrial translation elongation fac	98.42
PRK10416	318	signal recognition particle-docking protein FtsY;	98.41
PRK12289	352	GTPase RsgA; Reviewed	98.41
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.41
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.4
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.38
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.36
COG1162	301	Predicted GTPases [General function prediction onl	98.34
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.34
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.32
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.32
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.31
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.3
PRK14974	336	cell division protein FtsY; Provisional	98.3
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.28
PRK13796	365	GTPase YqeH; Provisional	98.27
cd03112	158	CobW_like The function of this protein family is u	98.27
PRK13796	365	GTPase YqeH; Provisional	98.27
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.27
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.22
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.2
PRK01889	356	GTPase RsgA; Reviewed	98.18
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.17
PRK00098	298	GTPase RsgA; Reviewed	98.14
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.14
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.13
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.12
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.07
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.02
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.02
PRK13695	174	putative NTPase; Provisional	98.01
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.01
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.99
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.98
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.98
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.97
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.94
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.82
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.81
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.78
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.77
COG1162	301	Predicted GTPases [General function prediction onl	97.76
TIGR00959	428	ffh signal recognition particle protein. This mode	97.75
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.75
cd03114	148	ArgK-like The function of this protein family is u	97.71
COG0523	323	Putative GTPases (G3E family) [General function pr	97.7
KOG2484	435	consensus GTPase [General function prediction only	97.68
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.67
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.66
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.65
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.65
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.65
PRK10867	433	signal recognition particle protein; Provisional	97.62
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.61
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.59
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.59
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.58
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.56
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.5
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.49
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.49
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.47
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.47
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.47
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.46
PRK08118	167	topology modulation protein; Reviewed	97.43
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.43
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.41
PRK07261	171	topology modulation protein; Provisional	97.39
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.36
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.34
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.31
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.3
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.3
PRK01889	356	GTPase RsgA; Reviewed	97.29
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.25
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.24
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.23
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.2
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.2
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.19
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.16
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.16
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.15
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.15
cd03111	106	CpaE_like This protein family consists of proteins	97.14
PRK04195	482	replication factor C large subunit; Provisional	97.13
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.12
cd03110	179	Fer4_NifH_child This protein family's function is	97.1
PRK06217	183	hypothetical protein; Validated	97.08
PRK14737	186	gmk guanylate kinase; Provisional	97.07
PF00004	132	AAA: ATPase family associated with various cellula	97.06
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.06
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.05
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.05
smart00382	148	AAA ATPases associated with a variety of cellular	97.04
PRK03839	180	putative kinase; Provisional	97.01
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.01
PRK14738	206	gmk guanylate kinase; Provisional	97.01
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.01
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.0
PRK14530	215	adenylate kinase; Provisional	96.98
KOG3929	363	consensus Uncharacterized conserved protein [Funct	96.98
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.97
cd02036	179	MinD Bacterial cell division requires the formatio	96.95
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.95
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.95
PRK10646	153	ADP-binding protein; Provisional	96.93
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.92
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.92
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.91
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.91
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.9
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.9
PRK13949	169	shikimate kinase; Provisional	96.9
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.9
KOG1533	290	consensus Predicted GTPase [General function predi	96.88
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.88
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	96.87
PRK14532	188	adenylate kinase; Provisional	96.87
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.87
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.87
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.87
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	96.86
PRK05480	209	uridine/cytidine kinase; Provisional	96.85
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.84
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.82
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.82
COG0802	149	Predicted ATPase or kinase [General function predi	96.82
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.8
PLN03025	319	replication factor C subunit; Provisional	96.79
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.79
PRK13851	344	type IV secretion system protein VirB11; Provision	96.79
PRK00625	173	shikimate kinase; Provisional	96.79

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-43  Score=255.49  Aligned_cols=175  Identities=48%  Similarity=0.823  Sum_probs=166.9

Q ss_pred             cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417            8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (223)
Q Consensus         8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   87 (223)
                      ....++.+||+|+|+.|||||+|+.++..+.+...+..|+|+++..+.+.+++..+.+++|||+|+++++++..++++++
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHH
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTA  166 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~  166 (223)
                      |++|+|||+++.+||+.+..|+.++.++...+.|.++||||+|+.+.+.++.++++.|+..++++ |+++||+++.|+++
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 027417          167 AFQTVVTEIYNILSRK  182 (223)
Q Consensus       167 ~~~~l~~~~~~~~~~~  182 (223)
                      +|..|+..+..++...
T Consensus       163 ~F~~la~~lk~~~~~~  178 (205)
T KOG0084|consen  163 AFLTLAKELKQRKGLH  178 (205)
T ss_pred             HHHHHHHHHHHhcccC
Confidence            9999998876655443

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-40  Score=241.89  Aligned_cols=222  Identities=59%  Similarity=0.946  Sum_probs=196.7

Q ss_pred             CCccccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchh
Q 027417            1 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT   80 (223)
Q Consensus         1 m~~~~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~   80 (223)
                      |.+.....+..++.+||+++|++++|||-|+.++..+.+......|+|+++....+.+++..+..+||||+|+++|+.+.
T Consensus         1 ~~~~~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit   80 (222)
T KOG0087|consen    1 MARRRDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT   80 (222)
T ss_pred             CCCccCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcccc
Confidence            55667777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027417           81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD  160 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (223)
                      .++++.+.+.++|||++.+.+|+.+..|+.+++.+.+.++++++||||+||...+.+..++++.+++..+..|+++||.+
T Consensus        81 SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~  160 (222)
T KOG0087|consen   81 SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALD  160 (222)
T ss_pred             chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccc
Confidence            99999999999999999999999999999999999988999999999999999899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417          161 SSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS  222 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  222 (223)
                      +.|++.+|+.++..+++...++...........+...+++...+.........+.++.+||.
T Consensus       161 ~tNVe~aF~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~cc~  222 (222)
T KOG0087|consen  161 ATNVEKAFERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGCCS  222 (222)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCCCC
Confidence            99999999999999999999988766544333223334555555545454445555677774

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-40  Score=238.13  Aligned_cols=168  Identities=45%  Similarity=0.749  Sum_probs=159.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...+||+|+|+.+||||||+-++..+.|.+...+|+|..+....+.+.+..+.+.||||+|+++|..+..+|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            45699999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|||+++.+||..++.|+.++.+....++-+.+||||+|+.+.+++..+++..+++..++.||++||+++.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999998877677788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027417          172 VTEIYNIL  179 (223)
Q Consensus       172 ~~~~~~~~  179 (223)
                      ++++....
T Consensus       163 a~~lp~~~  170 (200)
T KOG0092|consen  163 AEKLPCSD  170 (200)
T ss_pred             HHhccCcc
Confidence            98875443

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.8e-39  Score=235.15  Aligned_cols=173  Identities=49%  Similarity=0.860  Sum_probs=167.1

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      ++++.+||+++|++|||||+|+.++..+.+...+..|+|+++..+.+..++..+.+++|||+|++++..+...|++.|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      +++|||+++..||+.+..|+..+..+....+|.++||||+|+...++++.+.++.+|.++|++|+|+||++|.||.+.|-
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 027417          170 TVVTEIYNILSRK  182 (223)
Q Consensus       170 ~l~~~~~~~~~~~  182 (223)
                      .|++.+.+.+...
T Consensus       168 ~La~~i~~k~~~~  180 (207)
T KOG0078|consen  168 SLARDILQKLEDA  180 (207)
T ss_pred             HHHHHHHhhcchh
Confidence            9999998755554

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-39  Score=231.67  Aligned_cols=167  Identities=37%  Similarity=0.692  Sum_probs=157.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      -..+||+++|+.+|||||||.++..+.+...|.+|+|+++...++.+.+..+.+++|||+|+++|+.+...|++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            34599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCC-CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      +|||+++..||+...+|++.+...... .+.+++||||.||.+.++++.+++...++++++.|.++||+.|.||..+|..
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr  179 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR  179 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence            999999999999999999999887665 4778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027417          171 VVTEIYNI  178 (223)
Q Consensus       171 l~~~~~~~  178 (223)
                      |+..+...
T Consensus       180 Iaa~l~~~  187 (221)
T KOG0094|consen  180 IAAALPGM  187 (221)
T ss_pred             HHHhccCc
Confidence            88776444

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.8e-39  Score=223.43  Aligned_cols=169  Identities=44%  Similarity=0.754  Sum_probs=159.0

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ....+.+||+|+|.+|+|||||+.+++...+++..+.|+|+++..+.+.+++..+++.||||+|+++|+.+...+++.+.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            45677899999999999999999999999999998999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      ++|+|||++.+++|..+..|++++..++ +.++..++|+||+|...++.++.+|..+|++++++-|+++||++.+|+...
T Consensus        86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            9999999999999999999999998775 445677899999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          168 FQTVVTEIYN  177 (223)
Q Consensus       168 ~~~l~~~~~~  177 (223)
                      |+.++.++++
T Consensus       166 FeelveKIi~  175 (209)
T KOG0080|consen  166 FEELVEKIIE  175 (209)
T ss_pred             HHHHHHHHhc
Confidence            9999987743

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-38  Score=227.47  Aligned_cols=174  Identities=53%  Similarity=0.884  Sum_probs=166.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      +.+.+|++++|+.|||||+|+.+++...|.+..+.|+|+++....+.+++..+++++|||+|++.+.++...+++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |+|||+++++||+.+..|+..+..+...+..++++|||+|+...++++.+|++.|++++++.++++||++++|++++|-.
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhh
Q 027417          171 VVTEIYNILSRKVM  184 (223)
Q Consensus       171 l~~~~~~~~~~~~~  184 (223)
                      ....++.....-..
T Consensus       163 ta~~Iy~~~q~g~~  176 (216)
T KOG0098|consen  163 TAKEIYRKIQDGVF  176 (216)
T ss_pred             HHHHHHHHHHhccc
Confidence            99999887776553

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.8e-37  Score=238.57  Aligned_cols=207  Identities=59%  Similarity=0.965  Sum_probs=173.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++++..++..+++.++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            55779999999999999999999999988878888889888888888888899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |+|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|+.
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776668999999999999877788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417          171 VVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS  222 (223)
Q Consensus       171 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  222 (223)
                      |+..+.+....+...........+++.++++...   .+.  .+.+++||||
T Consensus       169 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~c~  215 (216)
T PLN03110        169 ILLEIYHIISKKALAAQEAAANSGLPGQGTTINV---ADT--SGNNKRGCCS  215 (216)
T ss_pred             HHHHHHHHhhccccccccCcccccCcCcCCcccc---cCc--cCCCCCCCcC
Confidence            9999988765544333221121222333333333   112  3557788997

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=7.8e-38  Score=223.57  Aligned_cols=172  Identities=33%  Similarity=0.659  Sum_probs=159.4

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      .+...+||+|+|++|+|||||++++++..+...+..|+|.++..+.+.+++..+++++|||+|+++|.++.-.+++.+|.
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCC----CCCcEEEEEeCCCCCCC--cccCHHHHHHHHHHcC-CeEEEEccCCCC
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVGNKSDLKDA--REVTTAEGKALAEAQG-LFFMETSALDSS  162 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  162 (223)
                      .+++||++++.||+++..|..++..+..    ...|+||+|||+|+...  ++++...++.++...+ +|||++|||+..
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            9999999999999999999999866543    46899999999998763  7899999999998775 789999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q 027417          163 NVTAAFQTVVTEIYNILSR  181 (223)
Q Consensus       163 ~i~~~~~~l~~~~~~~~~~  181 (223)
                      ||.+.|+.+++.++.....
T Consensus       165 NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  165 NVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cHHHHHHHHHHHHHhccch
Confidence            9999999999999877665

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=8.1e-37  Score=231.82  Aligned_cols=167  Identities=40%  Similarity=0.761  Sum_probs=153.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      ++|+++|+.|||||||++++..+.+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999998888899888888888888999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      |++++.||+.+..|+..+......+.|+++||||+|+.+.+++..+++..+++.. ++.|++|||++|.||+++|++|+.
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887766667999999999999877889999999999885 789999999999999999999998


Q ss_pred             HHHHHHhh
Q 027417          174 EIYNILSR  181 (223)
Q Consensus       174 ~~~~~~~~  181 (223)
                      .+.+.+..
T Consensus       161 ~~~~~~~~  168 (202)
T cd04120         161 DILKKMPL  168 (202)
T ss_pred             HHHHhCcc
Confidence            88665433

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1e-37  Score=215.22  Aligned_cols=170  Identities=47%  Similarity=0.805  Sum_probs=161.5

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      +.....++.+|+|++|+|||+|+.++..+.+..+|..|+|+++..+++.++|..+.++|||++|++.|+.+...+++..+
T Consensus         3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth   82 (198)
T KOG0079|consen    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH   82 (198)
T ss_pred             ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      ++++|||+++.+||.++..|++++...++ ..|-|+||||.|..+.+.+..++++.++...++.+|++|+++++|++..|
T Consensus        83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF  161 (198)
T KOG0079|consen   83 GVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF  161 (198)
T ss_pred             eEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence            99999999999999999999999998877 79999999999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          169 QTVVTEIYNIL  179 (223)
Q Consensus       169 ~~l~~~~~~~~  179 (223)
                      .-|.+.++...
T Consensus       162 ~cit~qvl~~k  172 (198)
T KOG0079|consen  162 HCITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHHH
Confidence            99998877665

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=2.1e-36  Score=230.49  Aligned_cols=164  Identities=35%  Similarity=0.641  Sum_probs=147.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      +||+|+|++|||||||+++|+++.+...+.+|.+.++....+.++ +..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999998888888998888877777777 7889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcC----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHS----DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAF  168 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~  168 (223)
                      ||++++.+|+.+..|+..+....    ..+.|+++|+||+|+.+.+.+..+++..+++..+ ..++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998876432    3468999999999998667788899999999998 689999999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          169 QTVVTEIYNI  178 (223)
Q Consensus       169 ~~l~~~~~~~  178 (223)
                      ++|++.+.+.
T Consensus       161 ~~l~~~l~~~  170 (201)
T cd04107         161 RFLVKNILAN  170 (201)
T ss_pred             HHHHHHHHHh
Confidence            9999888654

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.8e-36  Score=227.87  Aligned_cols=169  Identities=38%  Similarity=0.668  Sum_probs=153.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .+..+||+|+|..|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            34679999999999999999999999888777777878888777888899999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |+|||++++.+|+.+..|+..+..... +.|+||||||.|+.+.+.++.++++.+++..+++|++|||++|.||+++|++
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            999999999999999999999977654 7999999999999887888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027417          171 VVTEIYNILS  180 (223)
Q Consensus       171 l~~~~~~~~~  180 (223)
                      |++.+..+..
T Consensus       162 l~~~i~~~~~  171 (189)
T cd04121         162 LARIVLMRHG  171 (189)
T ss_pred             HHHHHHHhcC
Confidence            9987754433

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-36  Score=210.11  Aligned_cols=173  Identities=42%  Similarity=0.754  Sum_probs=163.7

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      --++-+|++|+|+..+|||||+.++.+..+.+....|.|+++..+++.-....+.+++|||+|+++++.+...+++++++
T Consensus        17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg   96 (193)
T KOG0093|consen   17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG   96 (193)
T ss_pred             cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence            34677899999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      +|+|||++|.+||..++.|...+..++-.+.|+|+|+||||+.+++.++.+.++.++..+|..||++||+.+.|++++|+
T Consensus        97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe  176 (193)
T KOG0093|consen   97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFE  176 (193)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHH
Confidence            99999999999999999999999988877999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 027417          170 TVVTEIYNILSRK  182 (223)
Q Consensus       170 ~l~~~~~~~~~~~  182 (223)
                      .++..+.+.+..+
T Consensus       177 ~lv~~Ic~kmses  189 (193)
T KOG0093|consen  177 RLVDIICDKMSES  189 (193)
T ss_pred             HHHHHHHHHhhhh
Confidence            9998887766554

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.4e-37  Score=213.14  Aligned_cols=182  Identities=41%  Similarity=0.740  Sum_probs=170.6

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ++++..+||+++|+.|+|||+|+++++.+.+++....|+|+++..+++.++++.+++++|||+|+++++++...+++.++
T Consensus         2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah   81 (213)
T KOG0095|consen    2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH   81 (213)
T ss_pred             cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      ++|++||++...+|+-+..|+.++..+.+.++--|+|+||.|+.+.++++.+.+++|++.....|+++||++..|++.+|
T Consensus        82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf  161 (213)
T KOG0095|consen   82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF  161 (213)
T ss_pred             eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence            99999999999999999999999999988888899999999999989999999999999988999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhHhhh
Q 027417          169 QTVVTEIYNILSRKVMISQELK  190 (223)
Q Consensus       169 ~~l~~~~~~~~~~~~~~~~~~~  190 (223)
                      ..++-++...+.++-.+.....
T Consensus       162 ~~~a~rli~~ar~~d~v~~~~a  183 (213)
T KOG0095|consen  162 LDLACRLISEARQNDLVNNVSA  183 (213)
T ss_pred             HHHHHHHHHHHHhccchhhccc
Confidence            9999999888877765444333

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=4.9e-35  Score=220.73  Aligned_cols=164  Identities=46%  Similarity=0.765  Sum_probs=149.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999887778888888887778888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      |++++.+|+.+..|+..+........|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999987665568999999999998777788888899998889999999999999999999999988


Q ss_pred             HHHH
Q 027417          175 IYNI  178 (223)
Q Consensus       175 ~~~~  178 (223)
                      +.++
T Consensus       161 ~~~~  164 (188)
T cd04125         161 IIKR  164 (188)
T ss_pred             HHHH
Confidence            7543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=6.7e-35  Score=221.80  Aligned_cols=196  Identities=40%  Similarity=0.697  Sum_probs=163.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ++.++|+|+|++|||||||+++|.+..+...+.+|.+.++....+.+++..+.+.|||+||++.+..++..+++++|++|
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            45799999999999999999999998887778888888887777778888889999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|||++++++|+.+..|+..+..... ..|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|++|
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l  162 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI  162 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence            99999999999999999999876543 68999999999998767778888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCC
Q 027417          172 VTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCC  221 (223)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  221 (223)
                      ...++.....+..             ..+.....-....+++.+++..||
T Consensus       163 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         163 TELVLRAKKDNLA-------------KQQQQQQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHHHHhhhccCc-------------ccccCCccccCccchhccccccCC
Confidence            9988654333211             111112222334455667778888

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=5.8e-35  Score=216.05  Aligned_cols=164  Identities=49%  Similarity=0.869  Sum_probs=150.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999988888888888888777788888889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      ||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.++.+++..+++..+++++++||++|.|++++|..+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999987766567899999999999887788889999999999999999999999999999999998


Q ss_pred             HHHH
Q 027417          174 EIYN  177 (223)
Q Consensus       174 ~~~~  177 (223)
                      .+++
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            7754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=8.2e-35  Score=223.22  Aligned_cols=187  Identities=31%  Similarity=0.519  Sum_probs=152.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+|+|.+|||||||+++|..+.+.. +.++.+.++....+    ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999988864 56776766544433    4578999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-------------------CcccCHHHHHHHHHHcC-----
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD-------------------AREVTTAEGKALAEAQG-----  150 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~-----  150 (223)
                      |++++.+|+.+..|+..+......+.|+|+|+||+|+.+                   .+.+..+++..+++..+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999888877665555799999999999875                   57788999999999876     


Q ss_pred             ---------CeEEEEccCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCC
Q 027417          151 ---------LFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCC  221 (223)
Q Consensus       151 ---------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  221 (223)
                               ++|++|||++|.||+++|..+++.++....+.......+               -..+.+.+-+.+|.+||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT---------------QGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh---------------hccccCCCcccCCCCCC
Confidence                     689999999999999999999998876655554422211               12233444566788898

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=6.4e-35  Score=218.39  Aligned_cols=164  Identities=32%  Similarity=0.552  Sum_probs=146.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .+..+||+++|++|||||||++++..+.+...+.||.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            35678999999999999999999999999888888887655 45677888999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEE
Q 027417           91 LLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFMET  156 (223)
Q Consensus        91 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~  156 (223)
                      |+|||++++.||+.+ ..|+..+..... ..|++|||||+|+.+            .+.++.+++..+++..++ +|++|
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 899999987654 699999999999864            246899999999999996 89999


Q ss_pred             ccCCCCC-HHHHHHHHHHHHH
Q 027417          157 SALDSSN-VTAAFQTVVTEIY  176 (223)
Q Consensus       157 Sa~~~~~-i~~~~~~l~~~~~  176 (223)
                      ||++|.| |+++|+.+++.++
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999987543

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.4e-34  Score=214.27  Aligned_cols=166  Identities=51%  Similarity=0.903  Sum_probs=152.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ++.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+++||++|++.+...+..+++++|++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            35699999999999999999999999998888888888887777888888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999987666679999999999998777778888899999999999999999999999999999


Q ss_pred             HHHHHH
Q 027417          172 VTEIYN  177 (223)
Q Consensus       172 ~~~~~~  177 (223)
                      ++++..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            988754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1e-34  Score=223.29  Aligned_cols=164  Identities=33%  Similarity=0.583  Sum_probs=148.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      +||+|+|++|||||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999998888889989888887777754 578999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcCC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHSD---MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      ||++++++|+.+..|+..+.....   .+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999876542   35689999999999877788889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027417          171 VVTEIYNI  178 (223)
Q Consensus       171 l~~~~~~~  178 (223)
                      |+..+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99888764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=4.1e-34  Score=219.08  Aligned_cols=171  Identities=49%  Similarity=0.854  Sum_probs=155.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ++.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45699999999999999999999998888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|||++++.+|+.+..|+..+........|+++|+||+|+.+.+.++.+++..+++.++++++++||+++.|++++|+++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988876655679999999999998777788899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 027417          172 VTEIYNILSRK  182 (223)
Q Consensus       172 ~~~~~~~~~~~  182 (223)
                      ++.+++.....
T Consensus       164 ~~~~~~~~~~~  174 (210)
T PLN03108        164 AAKIYKKIQDG  174 (210)
T ss_pred             HHHHHHHhhhc
Confidence            99988765433

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=3.2e-34  Score=219.73  Aligned_cols=170  Identities=45%  Similarity=0.789  Sum_probs=152.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE-CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      .+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999888888888888887777766 4667899999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      |||++++.+|+.+..|+..+.... ....|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999987653 3357789999999998777888899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 027417          172 VTEIYNILSRKV  183 (223)
Q Consensus       172 ~~~~~~~~~~~~  183 (223)
                      ++.+++.+....
T Consensus       162 ~~~~~~~~~~~~  173 (211)
T cd04111         162 TQEIYERIKRGE  173 (211)
T ss_pred             HHHHHHHhhcCC
Confidence            999888865554

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.4e-34  Score=218.33  Aligned_cols=164  Identities=37%  Similarity=0.560  Sum_probs=145.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..+||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            358999999999999999999999888777778766555 5566788888999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      |||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|+.++|++|
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            999999999999999999886653 3478999999999997767778888888988889999999999999999999999


Q ss_pred             HHHHHH
Q 027417          172 VTEIYN  177 (223)
Q Consensus       172 ~~~~~~  177 (223)
                      ++.+.+
T Consensus       163 ~~~l~~  168 (189)
T PTZ00369        163 VREIRK  168 (189)
T ss_pred             HHHHHH
Confidence            987754

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.1e-34  Score=215.99  Aligned_cols=159  Identities=32%  Similarity=0.602  Sum_probs=143.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|+|||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999888889987665 445677888999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCc----------ccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027417           95 DISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDAR----------EVTTAEGKALAEAQGL-FFMETSALDSS  162 (223)
Q Consensus        95 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (223)
                      |++++.||+.+ ..|+..+..... +.|++|||||+|+.+.+          .++.+++..+++..++ +|++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 689999976654 79999999999996532          4789999999999998 59999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTEI  175 (223)
Q Consensus       163 ~i~~~~~~l~~~~  175 (223)
                      ||+++|+.+++.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999765

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=3.1e-34  Score=216.83  Aligned_cols=162  Identities=48%  Similarity=0.795  Sum_probs=145.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      +||+|+|++|||||||++++.++.+.. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988754 5667777777776778888889999999999999998899999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      ||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++|+++||++|.|++++|++|++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998776667999999999999766777888889999999999999999999999999999998


Q ss_pred             HHH
Q 027417          174 EIY  176 (223)
Q Consensus       174 ~~~  176 (223)
                      .+.
T Consensus       161 ~~~  163 (191)
T cd04112         161 ELK  163 (191)
T ss_pred             HHH
Confidence            774

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=4.8e-34  Score=220.21  Aligned_cols=171  Identities=27%  Similarity=0.458  Sum_probs=150.8

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      +....+||+++|++|||||+|+.++..+.+...+.+|.+..+. ..+.+++..+.+.||||+|++.+..++..+++++|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            4456789999999999999999999999998888899876654 457788999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEE
Q 027417           90 ALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFME  155 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~  155 (223)
                      +|+|||++++.||+.+ ..|+..+..... +.|+|+||||+|+.+            .+.++.++++.+++.+++ .|++
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E  166 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE  166 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999985 899999987654 689999999999864            256889999999999999 6999


Q ss_pred             EccCCCC-CHHHHHHHHHHHHHHHHhhh
Q 027417          156 TSALDSS-NVTAAFQTVVTEIYNILSRK  182 (223)
Q Consensus       156 ~Sa~~~~-~i~~~~~~l~~~~~~~~~~~  182 (223)
                      |||++|. ||+++|..++..+++....+
T Consensus       167 tSAktg~~~V~e~F~~~~~~~~~~~~~~  194 (232)
T cd04174         167 CSAFTSEKSIHSIFRSASLLCLNKLSPP  194 (232)
T ss_pred             ccCCcCCcCHHHHHHHHHHHHHHhcccc
Confidence            9999997 89999999998887654443

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=2.6e-34  Score=211.57  Aligned_cols=160  Identities=43%  Similarity=0.772  Sum_probs=147.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      ++|+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888888888887778888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      |++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++|+++||++|.|++++|++|+++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999877665579999999999998878888999999999999999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3e-35  Score=206.29  Aligned_cols=172  Identities=44%  Similarity=0.788  Sum_probs=158.2

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE-CCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ...+.++++++|++-+|||+|++.++.+.+..-.+||.|+++....+.+ ++..+++++|||+|+++++++...+++++-
T Consensus         4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv   83 (213)
T KOG0091|consen    4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV   83 (213)
T ss_pred             ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence            3457899999999999999999999999999999999999998877766 678899999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCC-CC-CcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSD-MN-VVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~-~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      ++++|||++|++||+.+..|+.+...+.. .. +-+.+||+|+|+...++++.+|++++++.++..|+++||++|.|+++
T Consensus        84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeE  163 (213)
T KOG0091|consen   84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE  163 (213)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence            99999999999999999999999876654 33 34457899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 027417          167 AFQTVVTEIYNILSR  181 (223)
Q Consensus       167 ~~~~l~~~~~~~~~~  181 (223)
                      .|..|.+.++..+.+
T Consensus       164 AF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  164 AFDMLAQEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988877

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.2e-35  Score=207.39  Aligned_cols=210  Identities=36%  Similarity=0.628  Sum_probs=179.1

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      .+...+||+++|..=+|||||+-+++...|......|+-..+..+.+.+.+....+.||||+|+++|-.+-.-+++.+|+
T Consensus         9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG   88 (218)
T KOG0088|consen    9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG   88 (218)
T ss_pred             CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence            45667999999999999999999999998877766776777777888888899999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      +++|||+++++||+.+..|..+++.-....+-+++|+||+|+.+++.++.+++..+++..|+.|+++||+++.||.++|+
T Consensus        89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe  168 (218)
T KOG0088|consen   89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE  168 (218)
T ss_pred             eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence            99999999999999999999999887777889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCCC
Q 027417          170 TVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCSS  223 (223)
Q Consensus       170 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~  223 (223)
                      .|..++++...++....-++    +..+....-.+.......+..+..++||.+
T Consensus       169 ~Lt~~MiE~~s~~qr~~~~~----s~qpp~t~r~~~~iD~e~~a~~sg~~CC~~  218 (218)
T KOG0088|consen  169 SLTAKMIEHSSQRQRTRSPL----STQPPSTNRSIRLIDNEAEAERSGKRCCRI  218 (218)
T ss_pred             HHHHHHHHHhhhcccccCCc----CCCCCCcccchhccCCCcccccccCCccCC
Confidence            99999988877665533322    333333333444444444567777789975

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=3.2e-34  Score=216.60  Aligned_cols=162  Identities=34%  Similarity=0.545  Sum_probs=142.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      ||+|+|.+|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999888777777766444 3455678888899999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           96 ISRRQTFDSIGRWLNELHTHS---DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ++++.+|+.+..|+..+....   ..+.|+++|+||+|+...+.+...++..++...+++++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999998886543   24689999999999987777888888889998999999999999999999999999


Q ss_pred             HHHHHH
Q 027417          173 TEIYNI  178 (223)
Q Consensus       173 ~~~~~~  178 (223)
                      +.+.++
T Consensus       160 ~~l~~~  165 (190)
T cd04144         160 RALRQQ  165 (190)
T ss_pred             HHHHHh
Confidence            876433

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=3.8e-34  Score=210.69  Aligned_cols=161  Identities=37%  Similarity=0.721  Sum_probs=153.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      ||+++|++|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++.+..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999998899998899999999999999999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417           96 ISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ++++.||+.+..|+..+........|+++|+||.|+.+.+.++.++++.+++.++++|+++||+++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988776799999999999998789999999999999999999999999999999999999887


Q ss_pred             H
Q 027417          176 Y  176 (223)
Q Consensus       176 ~  176 (223)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            4

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=4.1e-34  Score=212.62  Aligned_cols=165  Identities=32%  Similarity=0.477  Sum_probs=146.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+|+|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|.+.+..++..+++.+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999988877788876444 44567788889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+.++++.++++.+++..+++|++|||++|.||+++|++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            9999999999999998887654 335799999999999987778899999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027417          173 TEIYNIL  179 (223)
Q Consensus       173 ~~~~~~~  179 (223)
                      +.+.+..
T Consensus       161 ~~~~~~~  167 (172)
T cd04141         161 REIRRKE  167 (172)
T ss_pred             HHHHHhc
Confidence            8876543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-34  Score=200.91  Aligned_cols=177  Identities=48%  Similarity=0.779  Sum_probs=167.0

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   86 (223)
                      |.+.+++.+|++++|+.|+|||+|++++...++......|+|+++..+.+.+.+..+++++|||+|++++++....+++.
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      +.+.++|||++++++|+.+..|+..++......+-+|+++||.|+..+++++..++..|+.+..+.+.++||++|+|+++
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            99999999999999999999999999888877888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 027417          167 AFQTVVTEIYNILSRKV  183 (223)
Q Consensus       167 ~~~~l~~~~~~~~~~~~  183 (223)
                      .|-...+.++..+..-+
T Consensus       162 aFl~c~~tIl~kIE~GE  178 (214)
T KOG0086|consen  162 AFLKCARTILNKIESGE  178 (214)
T ss_pred             HHHHHHHHHHHHHhhcC
Confidence            99998888877665433

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=9.7e-34  Score=209.32  Aligned_cols=162  Identities=44%  Similarity=0.772  Sum_probs=147.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988888888887777777777888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      |++++.+++.+..|+..+........|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++++..
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999977665578999999999998777777888888999999999999999999999999999876


Q ss_pred             HH
Q 027417          175 IY  176 (223)
Q Consensus       175 ~~  176 (223)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            53

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=6.7e-34  Score=212.95  Aligned_cols=167  Identities=39%  Similarity=0.750  Sum_probs=149.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC----------CEEEEEEEEeCCCchhhhchhH
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN----------GKEVKAQIWDTAGQERFRAVTS   81 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~G~~~~~~~~~   81 (223)
                      ++.+||+++|++|||||||++++.++.+...+.++.+.++....+.+.          +..+.+.+||++|++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            467999999999999999999999999888888888877766655553          4568899999999999999999


Q ss_pred             hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027417           82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD  160 (223)
Q Consensus        82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (223)
                      .+++++|++|+|||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999999999999999999999999986653 34689999999999987778888899999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~~~~  178 (223)
                      |.|++++|++|++.++++
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999888654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=4.3e-34  Score=213.43  Aligned_cols=160  Identities=30%  Similarity=0.551  Sum_probs=142.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++|+||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            6999999999999999999999999888888877655 356778889999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEEccCC
Q 027417           95 DISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFMETSALD  160 (223)
Q Consensus        95 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (223)
                      |++++.||+.+ ..|+..+..... ..|+++||||+|+.+            .+.++.+++.++++..++ +|++|||++
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            99999999996 799999987654 799999999999864            245889999999999997 799999999


Q ss_pred             CCC-HHHHHHHHHHHHH
Q 027417          161 SSN-VTAAFQTVVTEIY  176 (223)
Q Consensus       161 ~~~-i~~~~~~l~~~~~  176 (223)
                      |.+ |+++|..+++..+
T Consensus       160 ~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         160 SEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            995 9999999987543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.2e-33  Score=208.86  Aligned_cols=163  Identities=50%  Similarity=0.850  Sum_probs=149.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999888877788888888777888888889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      ||++++++|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|+.|++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999997766557999999999999877778889999999999999999999999999999999998


Q ss_pred             HHH
Q 027417          174 EIY  176 (223)
Q Consensus       174 ~~~  176 (223)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.2e-33  Score=208.83  Aligned_cols=162  Identities=34%  Similarity=0.672  Sum_probs=148.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888899888888888888889999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCC-----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSD-----MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      |++++.+++.+..|+..+.....     .+.|+++|+||+|+.+......++.+.++...+++++++||++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999876643     4699999999999976567788888888888899999999999999999999


Q ss_pred             HHHHHHH
Q 027417          170 TVVTEIY  176 (223)
Q Consensus       170 ~l~~~~~  176 (223)
                      +|++.++
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998775

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1.4e-33  Score=213.13  Aligned_cols=160  Identities=29%  Similarity=0.547  Sum_probs=141.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+++|+.|||||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            48999999999999999999999999888888877554 34456788899999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CeEEEEccC
Q 027417           94 YDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQG-LFFMETSAL  159 (223)
Q Consensus        94 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  159 (223)
                      ||++++.||+.+. .|+..+..... +.|+++||||.|+.+.            +.+..++++.+++..+ ++|+++||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999996 69888866543 7999999999999653            2367788999999998 589999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027417          160 DSSNVTAAFQTVVTEI  175 (223)
Q Consensus       160 ~~~~i~~~~~~l~~~~  175 (223)
                      +|.|++++|++|++.+
T Consensus       161 ~g~~v~e~f~~l~~~~  176 (191)
T cd01875         161 NQDGVKEVFAEAVRAV  176 (191)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999998766

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=3.9e-33  Score=206.69  Aligned_cols=166  Identities=54%  Similarity=0.914  Sum_probs=151.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      .+.+||+|+|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..+...+++.+|++|
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999999888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|||++++.+++.+..|+..+......+.|+++|+||.|+.+.+.+..++++.++...+++++++||+++.|++++|+++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999977665679999999999998767788889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027417          172 VTEIYN  177 (223)
Q Consensus       172 ~~~~~~  177 (223)
                      ++.+++
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            987753

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2.8e-33  Score=206.72  Aligned_cols=163  Identities=67%  Similarity=1.075  Sum_probs=149.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      +.+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            45899999999999999999999998888888888888888888888888899999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999999877665799999999999987777888888999988899999999999999999999998


Q ss_pred             HHH
Q 027417          173 TEI  175 (223)
Q Consensus       173 ~~~  175 (223)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=2.1e-33  Score=210.47  Aligned_cols=162  Identities=30%  Similarity=0.541  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|+.|||||||++++.++.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888999998888888888988999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-----CcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD-----AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      |++++.+|+.+..|+..+........| |+|+||+|+..     ......++++.+++..+++++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998776554566 68899999852     112234677888889999999999999999999999


Q ss_pred             HHHHHHHH
Q 027417          170 TVVTEIYN  177 (223)
Q Consensus       170 ~l~~~~~~  177 (223)
                      ++++.+++
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99987764

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=5.2e-33  Score=205.37  Aligned_cols=162  Identities=49%  Similarity=0.842  Sum_probs=146.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      +.+||+|+|++|||||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            56999999999999999999999988887777887777777778888888899999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..+++..+++..+. .++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999776666799999999999987777888888999998886 58999999999999999999


Q ss_pred             HHH
Q 027417          172 VTE  174 (223)
Q Consensus       172 ~~~  174 (223)
                      ++.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=5.2e-33  Score=213.42  Aligned_cols=163  Identities=28%  Similarity=0.498  Sum_probs=142.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+|+|++|||||||+.+|..+.+...+.||.+..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999998888898876654 56678889999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027417           95 DISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALD  160 (223)
Q Consensus        95 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (223)
                      |++++++|+.+ ..|...+.... .+.|+||||||+|+.+.            ..++.+++..+++..++ +|++|||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            99999999999 56887776554 47999999999998642            13778899999999996 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHHHH
Q 027417          161 SSN-VTAAFQTVVTEIYNIL  179 (223)
Q Consensus       161 ~~~-i~~~~~~l~~~~~~~~  179 (223)
                      +.+ |+++|+.++...+...
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         160 SERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhcc
Confidence            985 9999999988765433

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=3.2e-33  Score=208.39  Aligned_cols=160  Identities=26%  Similarity=0.474  Sum_probs=140.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+|+|++|||||||+.++.++.+...+.|+.+..+. ..+.+.+..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            379999999999999999999999988888888776553 3556788889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CeEEEEccC
Q 027417           94 YDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQG-LFFMETSAL  159 (223)
Q Consensus        94 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  159 (223)
                      ||++++.+|+.+. .|+..+..... +.|+++|+||+|+.+.            +.+..++++.+++..+ +.|++|||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999996 59888876543 6999999999998643            4677888999998887 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027417          160 DSSNVTAAFQTVVTEI  175 (223)
Q Consensus       160 ~~~~i~~~~~~l~~~~  175 (223)
                      +|.|++++|+.++..+
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=1e-32  Score=202.94  Aligned_cols=160  Identities=53%  Similarity=0.872  Sum_probs=147.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888888888888887778888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      |++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||+++.|++++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998876666689999999999998777788999999999999999999999999999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=7.9e-33  Score=203.71  Aligned_cols=160  Identities=36%  Similarity=0.575  Sum_probs=141.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999888777777765 444566777888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|+.++|++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887653 347999999999999776677778888888888899999999999999999999986


Q ss_pred             HH
Q 027417          174 EI  175 (223)
Q Consensus       174 ~~  175 (223)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=2.9e-32  Score=206.38  Aligned_cols=164  Identities=33%  Similarity=0.588  Sum_probs=143.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      +||+|+|++|||||||+++|.++.+.. .+.++.+.++....+.+++..+.+.+||++|.+++..++..+++.+|++|+|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988764 5677878777777888899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA----REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      ||++++.+++.+..|+..+..... +.|+++|+||+|+.+.    +.+..+++..++...+++++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999876533 6899999999998642    34566778888888899999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          170 TVVTEIYNIL  179 (223)
Q Consensus       170 ~l~~~~~~~~  179 (223)
                      +|++.+.+..
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9998886543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=1.6e-32  Score=206.83  Aligned_cols=163  Identities=29%  Similarity=0.502  Sum_probs=139.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      +||+|+|++|||||||+++|.++.+...+.++.+.++.. .+... +..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999998887777776665543 34454 6788999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 027417           94 YDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA----REVTTAEGKALAEAQGL-FFMETSALDSSNVTAA  167 (223)
Q Consensus        94 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~  167 (223)
                      ||++++.+|+.+. .|+..+.... .+.|+++|+||.|+...    +.+..+++..++...++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999995 5888876543 37899999999998653    35678889999999998 8999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          168 FQTVVTEIYNIL  179 (223)
Q Consensus       168 ~~~l~~~~~~~~  179 (223)
                      |+.+++.+....
T Consensus       159 f~~l~~~~~~~~  170 (187)
T cd04132         159 FDTAIEEALKKE  170 (187)
T ss_pred             HHHHHHHHHhhh
Confidence            999998886443

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=9.3e-33  Score=212.71  Aligned_cols=164  Identities=29%  Similarity=0.511  Sum_probs=146.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            66799999999999999999999999988888999998888877777888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|||++++.+|+.+..|+..+..... +.|+++||||+|+.. +.+..++. .++...+++|+++||++|.|++++|++|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            99999999999999999999986653 799999999999864 34445555 6777788999999999999999999999


Q ss_pred             HHHHHHH
Q 027417          172 VTEIYNI  178 (223)
Q Consensus       172 ~~~~~~~  178 (223)
                      +..+++.
T Consensus       168 ~~~~~~~  174 (219)
T PLN03071        168 ARKLAGD  174 (219)
T ss_pred             HHHHHcC
Confidence            9888654

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-33  Score=190.88  Aligned_cols=174  Identities=47%  Similarity=0.831  Sum_probs=164.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      +.+.+|-+|+|+-|+|||+|++.+....+....+.++|+++....+.+.+..+.+++|||+|+++++.....+++.+.+.
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga   87 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   87 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      ++|||++.+.+++.+..|+...+...+.+..+++++||.|+...+++..++++.|+++.+..|+++||++|.++++.|-.
T Consensus        88 lmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle  167 (215)
T KOG0097|consen   88 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLE  167 (215)
T ss_pred             eEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHH
Confidence            99999999999999999999998888878889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhh
Q 027417          171 VVTEIYNILSRKVM  184 (223)
Q Consensus       171 l~~~~~~~~~~~~~  184 (223)
                      .+.+++..+..-..
T Consensus       168 ~akkiyqniqdgsl  181 (215)
T KOG0097|consen  168 TAKKIYQNIQDGSL  181 (215)
T ss_pred             HHHHHHHhhhcCcc
Confidence            99999888765543

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.9e-32  Score=201.52  Aligned_cols=158  Identities=37%  Similarity=0.658  Sum_probs=143.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC--CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN--GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+.+.  +..+.+++|||||++.+..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999988888888888888766666666  778899999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      |||++++++++.+..|+..+..... +.|+++|+||+|+.....+..+++..+++..+++++++||++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999876543 799999999999987777888899999999999999999999999999999987


Q ss_pred             H
Q 027417          173 T  173 (223)
Q Consensus       173 ~  173 (223)
                      .
T Consensus       160 ~  160 (162)
T cd04106         160 E  160 (162)
T ss_pred             H
Confidence            5

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=3.1e-32  Score=202.18  Aligned_cols=162  Identities=35%  Similarity=0.643  Sum_probs=144.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      ||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988889998888887888888888999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           96 ISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDARE--VTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ++++.+++.+..|+..+... .....|+++|+||+|+.+.+.  ...+++..+++..+.+++++||++|.|++++|+.|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999987554 344578999999999865433  345667788888899999999999999999999999


Q ss_pred             HHHHH
Q 027417          173 TEIYN  177 (223)
Q Consensus       173 ~~~~~  177 (223)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            87754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=2.7e-32  Score=200.97  Aligned_cols=163  Identities=58%  Similarity=0.953  Sum_probs=148.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999998887777788888877778888888889999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      |++++.+++.+..|+..+..+...+.|+++|+||+|+...+++..+.+..++...+++++++|++++.|++++|++|++.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999877765589999999999988766778888999999999999999999999999999999988


Q ss_pred             HHH
Q 027417          175 IYN  177 (223)
Q Consensus       175 ~~~  177 (223)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            754

Rab GTPases are implicated in vesicle trafficking.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.1e-32  Score=202.39  Aligned_cols=160  Identities=31%  Similarity=0.593  Sum_probs=141.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988887788888888887777777888899999999999999988999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      |++++.+++.+..|+..+..... +.|+++|+||+|+.+ +... .+...+++..+++++++||++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999987765 799999999999874 3333 34456777778899999999999999999999987


Q ss_pred             HHH
Q 027417          175 IYN  177 (223)
Q Consensus       175 ~~~  177 (223)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.8e-32  Score=202.24  Aligned_cols=161  Identities=34%  Similarity=0.560  Sum_probs=142.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      ++||+++|.+|||||||++++..+.+...+.++++..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            37999999999999999999998888777777766544 45667788889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ||++++.+|+.+..|+..+... ...+.|+++|+||+|+.....+..+++..+++..+++++++||++|.|++++|.+|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999988654 345799999999999987667777888888888999999999999999999999998


Q ss_pred             HHH
Q 027417          173 TEI  175 (223)
Q Consensus       173 ~~~  175 (223)
                      +.+
T Consensus       160 ~~l  162 (164)
T cd04175         160 RQI  162 (164)
T ss_pred             HHh
Confidence            755

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1e-31  Score=206.15  Aligned_cols=170  Identities=44%  Similarity=0.769  Sum_probs=146.8

Q ss_pred             cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417            8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (223)
Q Consensus         8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   87 (223)
                      ....+..+||+|+|++|||||||+++|.+..+ ..+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+
T Consensus         8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   86 (211)
T PLN03118          8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA   86 (211)
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            44556789999999999999999999998776 45667778777777777888888999999999999999999999999


Q ss_pred             CEEEEEEECCCHhhHHHHHH-HHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417           88 VGALLVYDISRRQTFDSIGR-WLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  165 (223)
                      |++|+|||++++.+|+.+.. |...+.... ..+.|+++|+||+|+...+.+..++...++...+++|+++||+++.|++
T Consensus        87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~  166 (211)
T PLN03118         87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE  166 (211)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999965 766665432 3468999999999998767778888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027417          166 AAFQTVVTEIYNI  178 (223)
Q Consensus       166 ~~~~~l~~~~~~~  178 (223)
                      ++|++|+..+.+.
T Consensus       167 ~l~~~l~~~~~~~  179 (211)
T PLN03118        167 QCFEELALKIMEV  179 (211)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999888543

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=5.3e-32  Score=200.84  Aligned_cols=163  Identities=39%  Similarity=0.688  Sum_probs=145.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .+..+||+++|++|||||||++++.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            34679999999999999999999999988887788888887777888889999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcC----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHS----DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVT  165 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  165 (223)
                      |+|||++++.+++.+..|+..+....    ..+.|+++|+||+|+. .+.+..++++++++.++. +++++||++|.|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            99999999999999999998876543    2468999999999987 356778889999988884 79999999999999


Q ss_pred             HHHHHHHHH
Q 027417          166 AAFQTVVTE  174 (223)
Q Consensus       166 ~~~~~l~~~  174 (223)
                      ++|+.+++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=3.5e-32  Score=200.48  Aligned_cols=161  Identities=36%  Similarity=0.569  Sum_probs=141.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+++|||+|++.+..++..+++++|++|+|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            37999999999999999999999988877777754 45556777788888999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.....+..+++..++...+++++++||+++.|++++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999998886653 35799999999999976666777778888888889999999999999999999998


Q ss_pred             HHH
Q 027417          173 TEI  175 (223)
Q Consensus       173 ~~~  175 (223)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=5.6e-32  Score=199.13  Aligned_cols=160  Identities=35%  Similarity=0.609  Sum_probs=139.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||++++.++.+.+.+.++.+.+.......+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999888777777777776667777888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      |++++.+++.+..|+..+..... +.|+++|+||+|+...   ..++...++...+++++++||++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999876543 6899999999998532   2345566777788999999999999999999999988


Q ss_pred             HHHH
Q 027417          175 IYNI  178 (223)
Q Consensus       175 ~~~~  178 (223)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            7664

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=4.2e-32  Score=202.16  Aligned_cols=158  Identities=30%  Similarity=0.522  Sum_probs=138.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+|+|++|||||||+.++..+.+...+.++.+. .....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            79999999999999999999998888888888653 33445667888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027417           95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALD  160 (223)
Q Consensus        95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (223)
                      |++++++|+.+. .|+..+..... +.|+++|+||+|+.+.            +.+..+++..+++..+. ++++|||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999995 69888766543 7999999999998642            35788999999999985 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTE  174 (223)
Q Consensus       161 ~~~i~~~~~~l~~~  174 (223)
                      |.|++++|+.+++.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998753

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=6.8e-32  Score=203.68  Aligned_cols=160  Identities=31%  Similarity=0.518  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      .||+|+|++|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            48999999999999999999999888777788665543 45566788899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcC-CeEEEEccCC
Q 027417           95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAR------------EVTTAEGKALAEAQG-LFFMETSALD  160 (223)
Q Consensus        95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~  160 (223)
                      |++++.+|+.+. .|+..+..... +.|+++|+||+|+.+.+            .+..+++..++...+ ++|++|||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999986 69988876543 79999999999987543            356677888888877 6899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEIY  176 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~~  176 (223)
                      |.|++++|++|++.+.
T Consensus       159 ~~~v~e~f~~l~~~~~  174 (189)
T cd04134         159 NRGVNEAFTEAARVAL  174 (189)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998774

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-34  Score=199.93  Aligned_cols=175  Identities=38%  Similarity=0.688  Sum_probs=159.3

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC---------CEEEEEEEEeCCCchhhhch
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN---------GKEVKAQIWDTAGQERFRAV   79 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~G~~~~~~~   79 (223)
                      .++++.||.+.+|++|+|||||+.+++.+.+......|.|+++..+.+.++         +..+.+++|||+|+++++++
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            356788999999999999999999999999999889999999888777652         35678899999999999999


Q ss_pred             hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027417           80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA  158 (223)
Q Consensus        80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (223)
                      ..++++.+=+++++||+++..||-+++.|+..+..+. ..++-+|+++||+|+.+.+.++.+++..++.++++|||++||
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA  163 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA  163 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence            9999999999999999999999999999999997663 346778899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhhh
Q 027417          159 LDSSNVTAAFQTVVTEIYNILSRKV  183 (223)
Q Consensus       159 ~~~~~i~~~~~~l~~~~~~~~~~~~  183 (223)
                      -+|.|+++..+.|+..+++++.+-.
T Consensus       164 ~tg~Nv~kave~LldlvM~Rie~~v  188 (219)
T KOG0081|consen  164 CTGTNVEKAVELLLDLVMKRIEQCV  188 (219)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887654

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.1e-31  Score=199.32  Aligned_cols=162  Identities=41%  Similarity=0.740  Sum_probs=145.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh-chhHhhhcCCCEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-AVTSAYYRGAVGALL   92 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~~i~   92 (223)
                      .+||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++|+
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4899999999999999999999988887788888888877888888888999999999998876 578888999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC---CCCHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD---SSNVTAAF  168 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~  168 (223)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+++..+++..+++..+++|+++||++   +.++.++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999999887653 35799999999999988788888899999999999999999999   89999999


Q ss_pred             HHHHHHH
Q 027417          169 QTVVTEI  175 (223)
Q Consensus       169 ~~l~~~~  175 (223)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998755

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=8e-32  Score=198.66  Aligned_cols=161  Identities=40%  Similarity=0.610  Sum_probs=140.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+|+|++|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999888777777655 334456667888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      |++++++++.+..|+..+... ...+.|+++|+||+|+...+.+..+++..+++..+++++++||++|.|++++|++|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            999999999999998887654 3346899999999999876677788888899989999999999999999999999987


Q ss_pred             HHH
Q 027417          174 EIY  176 (223)
Q Consensus       174 ~~~  176 (223)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.3e-31  Score=196.84  Aligned_cols=160  Identities=40%  Similarity=0.753  Sum_probs=145.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||++++++..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++|+||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999888888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      |++++.+|+.+..|+..+......+.|+++++||+|+.+.+....++...+++..+++++++||+++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999876655579999999999997666778888888988889999999999999999999999864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=9.3e-32  Score=198.69  Aligned_cols=158  Identities=30%  Similarity=0.433  Sum_probs=137.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||+++++++.+...+.++.+..+ ...+..+...+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7899999999999999999999988777777755443 445556778889999999999999988888999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHS---DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      |++++.+++.+..|+..+....   ..+.|+++|+||+|+.+.+++..+++..++...++.++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999999999988776542   2479999999999998767778888888888889999999999999999999998


Q ss_pred             HH
Q 027417          172 VT  173 (223)
Q Consensus       172 ~~  173 (223)
                      +.
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            74

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.5e-31  Score=196.49  Aligned_cols=160  Identities=34%  Similarity=0.567  Sum_probs=139.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999888777777766443 45566788888899999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ +....+++..+++..+++++++||++|.|++++|++|+
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999998887653 34789999999999876 45667888888888899999999999999999999998


Q ss_pred             HHH
Q 027417          173 TEI  175 (223)
Q Consensus       173 ~~~  175 (223)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=2.4e-31  Score=195.84  Aligned_cols=162  Identities=45%  Similarity=0.818  Sum_probs=147.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+++|++|||||||+++|.++.+.....++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999988777778878777778888888899999999999999988999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      +|++++++++.+..|+..+........|+++++||+|+...+....++...++...+++++++||++|.|+.++|++|++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999987776567999999999998866677888888899998999999999999999999999987


Q ss_pred             HH
Q 027417          174 EI  175 (223)
Q Consensus       174 ~~  175 (223)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            64

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=1e-31  Score=203.82  Aligned_cols=166  Identities=19%  Similarity=0.246  Sum_probs=137.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc--------hhHhhhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTSAYYRG   86 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~   86 (223)
                      +||+|+|.+|||||||++++.++.+...+.++.+.+.....+.+++..+.+.+|||||...+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999998888888877666666677788889999999999654321        12345689


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEEccCCCC
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTHS---DMNVVTILVGNKSDLKDAREVTTAEGKALAE-AQGLFFMETSALDSS  162 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  162 (223)
                      +|++|+|||+++++||+.+..|+..+....   ..++|+++|+||+|+...+.+..++...++. ..+++|++|||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998886653   4579999999999997766666777777654 568999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q 027417          163 NVTAAFQTVVTEIYNILS  180 (223)
Q Consensus       163 ~i~~~~~~l~~~~~~~~~  180 (223)
                      |++++|+.++..++.+-.
T Consensus       161 ~v~~lf~~i~~~~~~~~~  178 (198)
T cd04142         161 HILLLFKELLISATTRGR  178 (198)
T ss_pred             CHHHHHHHHHHHhhccCC
Confidence            999999999987764433

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=2.1e-31  Score=196.26  Aligned_cols=161  Identities=35%  Similarity=0.556  Sum_probs=140.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+++|++|+|||||++++.++.+...+.++.+.. ......+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            4799999999999999999999988776667775533 344556788888999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ||++++.+++.+..|+..+... ...+.|+++|+||+|+.....+..+++..+++..+++++++||++|.|++++|++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999888654 334789999999999987666777888889988899999999999999999999998


Q ss_pred             HHH
Q 027417          173 TEI  175 (223)
Q Consensus       173 ~~~  175 (223)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2e-31  Score=202.02  Aligned_cols=156  Identities=28%  Similarity=0.528  Sum_probs=139.8

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH
Q 027417           20 IGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR   99 (223)
Q Consensus        20 ~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   99 (223)
                      +|++|||||||+++++.+.+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888878889989888888888888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027417          100 QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       100 ~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  178 (223)
                      .+|+.+..|+..+..... +.|+++|+||+|+.. +.+..++ ..++...++.|++|||++|.||.++|++|+..+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999987653 799999999999864 3444444 467788899999999999999999999999888654

Ran is involved in the active transport of proteins through nuclear pores.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=4.7e-31  Score=194.54  Aligned_cols=160  Identities=34%  Similarity=0.591  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD--EFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      +||+++|++|||||||++++.+.  .+...+.++.+.++....+.+. +..+.+.+|||||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  5667778888888776666664 56789999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|||++++.+++.+..|+..+.... .+.|+++|+||+|+....++...+++.+....+++++++||+++.|++++|+.|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999987664 468999999999997766777777777888888999999999999999999999


Q ss_pred             HHHH
Q 027417          172 VTEI  175 (223)
Q Consensus       172 ~~~~  175 (223)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=2e-31  Score=201.49  Aligned_cols=158  Identities=26%  Similarity=0.414  Sum_probs=129.6

Q ss_pred             eeEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCCCcccee-EeEEEE--------EEECCEEEEEEEEeCCCchhhhc
Q 027417           14 LFKVVLIGDSAVGKSNLLA-RFARDE-----FYPNSKSTIGV-EFQTQK--------MDINGKEVKAQIWDTAGQERFRA   78 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~G~~~~~~   78 (223)
                      .+||+++|++|||||||+. ++.++.     +...+.||.+. +.+...        ..+++..+.+.+|||+|++..  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            4799999999999999995 565443     34556677652 222222        246788999999999998753  


Q ss_pred             hhHhhhcCCCEEEEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCC-------------------CcccC
Q 027417           79 VTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD-------------------AREVT  138 (223)
Q Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~  138 (223)
                      ....+++++|++|+|||++++.||+.+. .|+..+..... +.|+++|+||+|+.+                   .+.++
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4556889999999999999999999996 69998876653 689999999999864                   36788


Q ss_pred             HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417          139 TAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      .++++.+++.++++|++|||++|.||+++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999998753

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=1.2e-30  Score=191.73  Aligned_cols=161  Identities=37%  Similarity=0.684  Sum_probs=143.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|+|||||+++++++.+...+.++.+.......+.+.+..+.+.+||++|++.+..++..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998887766666666666666777778889999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      |++++.+++.+..|+..+......+.|+++++||+|+.....+..++...+++..+++++++|++++.|+++++++|++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999877765579999999999998767777888888888889999999999999999999999876


Q ss_pred             H
Q 027417          175 I  175 (223)
Q Consensus       175 ~  175 (223)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            4

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=4.3e-31  Score=196.67  Aligned_cols=158  Identities=30%  Similarity=0.560  Sum_probs=137.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEEC
Q 027417           17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDI   96 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   96 (223)
                      |+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            68999999999999999999988777777755443 44566788889999999999999999999999999999999999


Q ss_pred             CCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027417           97 SRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALDSS  162 (223)
Q Consensus        97 ~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (223)
                      +++.+|+.+. .|+..+..... +.|+++|+||+|+...            +.+..+++..+++..+. ++++|||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999995 69998876544 7999999999998652            23778888999999987 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTEIY  176 (223)
Q Consensus       163 ~i~~~~~~l~~~~~  176 (223)
                      |++++|+.+++.++
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=1.4e-30  Score=193.35  Aligned_cols=164  Identities=37%  Similarity=0.699  Sum_probs=144.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999998887777778787777777888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcC----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHS----DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~  169 (223)
                      |++++.+++.+..|...+....    ..+.|+++|+||+|+...+....++...++...+ .+++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            9999999999988988764432    2369999999999998656677788888888887 7899999999999999999


Q ss_pred             HHHHHHHHH
Q 027417          170 TVVTEIYNI  178 (223)
Q Consensus       170 ~l~~~~~~~  178 (223)
                      +|++.+++.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999888765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=2.6e-30  Score=191.50  Aligned_cols=165  Identities=44%  Similarity=0.805  Sum_probs=146.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      ....++|+++|++|||||||++++.++.+...+.++.+.+.....+.+.+..+.+.+||++|+..+...+..++..+|++
T Consensus         4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            35679999999999999999999998887777777777777777788888888999999999999998889999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..+..+.+.+....+++++||++|.|++++|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999999887766667999999999999877777777778888888889999999999999999999


Q ss_pred             HHHHH
Q 027417          171 VVTEI  175 (223)
Q Consensus       171 l~~~~  175 (223)
                      |...+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            98754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=8.7e-31  Score=204.60  Aligned_cols=160  Identities=25%  Similarity=0.441  Sum_probs=138.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+|+|++|||||||+++++++.+...+.+|++ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999988877777765 555667778888999999999999999888888899999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhc---------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 027417           95 DISRRQTFDSIGRWLNELHTH---------SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-QGLFFMETSALDSSNV  164 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  164 (223)
                      |++++++|+.+..|+..+...         ...+.|+|+|+||+|+.+.+++..+++..++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999999888643         224689999999999987667788888777654 4678999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          165 TAAFQTVVTEI  175 (223)
Q Consensus       165 ~~~~~~l~~~~  175 (223)
                      +++|++|+..+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.98  E-value=8.2e-31  Score=192.16  Aligned_cols=153  Identities=20%  Similarity=0.362  Sum_probs=129.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||+.++..+.+...+.++ +..+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999988776655544 3333 45677888889999999999864     34568899999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCC--CcccCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKD--AREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |++++.||+.+..|+..+..... .+.|+++|+||.|+..  .+++..++++.+++.. +++|++|||++|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999876643 4689999999999853  4678888999998876 589999999999999999999


Q ss_pred             HHHH
Q 027417          171 VVTE  174 (223)
Q Consensus       171 l~~~  174 (223)
                      +++.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01863 Rab18 Rab18 subfamily

Probab=99.98  E-value=2.6e-30  Score=189.98  Aligned_cols=159  Identities=52%  Similarity=0.898  Sum_probs=142.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887777788788777777778888899999999999999988999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .....++...++...+++++++||++|.|++++++.+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999999999887663 45799999999999974 456678888899999999999999999999999999886


Q ss_pred             H
Q 027417          174 E  174 (223)
Q Consensus       174 ~  174 (223)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04177 RSR1 RSR1 subgroup

Probab=99.98  E-value=2.5e-30  Score=191.63  Aligned_cols=161  Identities=34%  Similarity=0.585  Sum_probs=142.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      ++|+++|++|||||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+..++..+++.++++|+||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            789999999999999999999988877777776644 3566677888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      |++++.+++.+..|...+... ...+.|+++++||.|+.+.+.+..+++..+++..+ ++++++||+++.|++++|++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            999999999999999888654 33479999999999998777778888888888887 7899999999999999999998


Q ss_pred             HHHH
Q 027417          173 TEIY  176 (223)
Q Consensus       173 ~~~~  176 (223)
                      ..++
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            7664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=1.7e-30  Score=193.44  Aligned_cols=157  Identities=31%  Similarity=0.552  Sum_probs=136.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|+|||||++++.++.+...+.++ +.+.....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            58999999999999999999988887777777 45555566778888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEEccCC
Q 027417           95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFMETSALD  160 (223)
Q Consensus        95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (223)
                      |++++.+|+.+. .|+..+.... .+.|+++|+||+|+..            .+.+..+++..+++..+. .|+++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999984 6988887543 3689999999999863            356778889999999988 799999999


Q ss_pred             CCCHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVT  173 (223)
Q Consensus       161 ~~~i~~~~~~l~~  173 (223)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998863

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=1e-30  Score=193.84  Aligned_cols=163  Identities=19%  Similarity=0.242  Sum_probs=140.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      ...+||+++|++|||||||+++++++.+. ..+.+|.+..+....+.+++..+.+.+||++|.+.+..++..+++.+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35799999999999999999999999887 77888888777767777888888999999999999988899999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ  169 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~  169 (223)
                      |+|||++++.+++.+..|+..+...  .+.|+++|+||+|+.+.......+..++++.+++. ++++||+++.|++++|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            9999999999999999998876432  26999999999999755544445567778888874 79999999999999999


Q ss_pred             HHHHHHH
Q 027417          170 TVVTEIY  176 (223)
Q Consensus       170 ~l~~~~~  176 (223)
                      .|++.++
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.98  E-value=9.3e-31  Score=193.30  Aligned_cols=159  Identities=35%  Similarity=0.551  Sum_probs=135.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-hhchhHhhhcCCCEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-FRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~~i~v~   94 (223)
                      ||+|+|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||+||+.. .......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999998877666666654333 45566788888999999999875 3445677889999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC-CCHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHS--DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS-SNVTAAFQTV  171 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l  171 (223)
                      |++++.+|+.+..|+..+....  ..+.|+++|+||+|+.+.+.+..+++..+++..+++|+++||+++ .|++++|+.|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999998887653  347999999999999776778888899999999999999999999 5999999999


Q ss_pred             HHHH
Q 027417          172 VTEI  175 (223)
Q Consensus       172 ~~~~  175 (223)
                      ++.+
T Consensus       160 ~~~~  163 (165)
T cd04146         160 CREV  163 (165)
T ss_pred             HHHH
Confidence            8765

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04135 Tc10 TC10 subfamily

Probab=99.98  E-value=2.1e-30  Score=192.89  Aligned_cols=159  Identities=30%  Similarity=0.514  Sum_probs=137.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|+|||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999888777777654 333445667888889999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027417           95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALD  160 (223)
Q Consensus        95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (223)
                      |++++.+|+.+. .|+..+... ..+.|+++|+||+|+.+.            +.++.+++..+++..++ ++++|||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999985 688888665 457999999999998643            35777888999999986 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEI  175 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~  175 (223)
                      |.|++++|+.++..+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04148 RGK RGK subfamily

Probab=99.98  E-value=2.7e-30  Score=199.27  Aligned_cols=165  Identities=27%  Similarity=0.363  Sum_probs=139.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhc-CCCEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYR-GAVGALL   92 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~-~~d~~i~   92 (223)
                      +||+++|++|||||||++++..+.+. ..+.++.+.+.....+.+++..+.+.+||++|++.  .....++. .+|++|+
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999888776 55666655466677778888889999999999872  23445666 8999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      |||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999999886653 3479999999999998777788888888998889999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027417          172 VTEIYNILSR  181 (223)
Q Consensus       172 ~~~~~~~~~~  181 (223)
                      +..+......
T Consensus       159 ~~~~~~~~~~  168 (221)
T cd04148         159 VRQIRLRRDS  168 (221)
T ss_pred             HHHHHhhhcc
Confidence            9877644443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd00154 Rab Rab family

Probab=99.97  E-value=5.5e-30  Score=187.04  Aligned_cols=158  Identities=54%  Similarity=0.926  Sum_probs=144.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988887888888888888888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      |++++.+++.+..|+..+........|+++++||+|+........++...++...+.+++++|++++.|+.++|++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999998877656799999999999975567788899999998899999999999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=3.4e-32  Score=184.96  Aligned_cols=160  Identities=48%  Similarity=0.775  Sum_probs=147.6

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEEC
Q 027417           18 VLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDI   96 (223)
Q Consensus        18 ~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   96 (223)
                      +++|++++|||+|+-++..+.+.. +...|.|+++..+.+..++..+.+++|||+|++++++....+++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            478999999999988888776653 4557889999999999999999999999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417           97 SRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus        97 ~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      .|..||++++.|+.++.++....+.+.+++||+|+..++.+..++.+.+++.+++||.++||++|.|++..|-.|++.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999998878899999999999888889999999999999999999999999999999999987764


Q ss_pred             H
Q 027417          177 N  177 (223)
Q Consensus       177 ~  177 (223)
                      +
T Consensus       161 k  161 (192)
T KOG0083|consen  161 K  161 (192)
T ss_pred             H
Confidence            3

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=3.4e-29  Score=184.32  Aligned_cols=161  Identities=37%  Similarity=0.576  Sum_probs=139.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||+++++...+...+.++.+.. .......++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999999999999988877666665433 3455667888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+...+....++...++..++++++++||+++.|++++|+.+++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999988887653 347999999999999765556777788888888999999999999999999999987


Q ss_pred             HHH
Q 027417          174 EIY  176 (223)
Q Consensus       174 ~~~  176 (223)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            663

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.97  E-value=3.4e-29  Score=183.54  Aligned_cols=158  Identities=37%  Similarity=0.605  Sum_probs=139.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      ||+|+|++|||||||++++++..+...+.++.+ +.....+...+..+.+.+||+||+..+...+..++..+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777777755 5555666677778899999999999998999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417           96 ISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      ++++++++.+..|+..+..... ...|+++|+||+|+...+....+++..++...+++++++|++++.|++++|++|+..
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888876543 579999999999998767778889999999889999999999999999999999864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=7.8e-29  Score=184.61  Aligned_cols=159  Identities=31%  Similarity=0.549  Sum_probs=134.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      .||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+...+..+|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999888777777766444 345667888889999999999999888888889999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027417           95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALD  160 (223)
Q Consensus        95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (223)
                      |++++++|+.+. .|+..+.... .+.|+++|+||+|+.+.            ..+...+++.++...+. ++++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999985 6888876543 37899999999998642            23456778888888775 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEI  175 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~  175 (223)
                      |.|++++|++|++.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=1.1e-28  Score=185.19  Aligned_cols=167  Identities=21%  Similarity=0.349  Sum_probs=132.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE-CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      .++|+++|++|||||||++++..+.+.. ..++.+.+.....+.. ++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            5899999999999999999999877754 3566666665554444 3466889999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH--H----cCCeEEEEccCCCCCHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE--A----QGLFFMETSALDSSNVT  165 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~----~~~~~~~~Sa~~~~~i~  165 (223)
                      |+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.  ...++...+..  .    .+++++++||+++.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            99999999999998888877554 2347999999999998642  33444444332  1    13468999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 027417          166 AAFQTVVTEIYNILSRKV  183 (223)
Q Consensus       166 ~~~~~l~~~~~~~~~~~~  183 (223)
                      ++|++|++.+.+.++...
T Consensus       160 ~l~~~l~~~l~~~~~~~~  177 (183)
T cd04152         160 EGLEKLYEMILKRRKMLR  177 (183)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999988866555443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1e-28  Score=186.09  Aligned_cols=161  Identities=31%  Similarity=0.532  Sum_probs=135.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      .||+|+|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+.......+..+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998877766666654433 345566778888999999999888777777889999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCC----------CcccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027417           95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD----------AREVTTAEGKALAEAQGL-FFMETSALDSS  162 (223)
Q Consensus        95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (223)
                      |+++.++|+.+. .|+..+..... ..|+++|+||+|+..          .+.+..+++..+++..++ +||+|||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999996 69998876554 599999999999854          244567788889999985 79999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTEIYN  177 (223)
Q Consensus       163 ~i~~~~~~l~~~~~~  177 (223)
                      |++++|+.+++.++.
T Consensus       160 ~v~~~f~~l~~~~~~  174 (187)
T cd04129         160 GVDDVFEAATRAALL  174 (187)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999977643

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=2.5e-28  Score=182.80  Aligned_cols=162  Identities=35%  Similarity=0.569  Sum_probs=138.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      .||+|+|++|+|||||++++.+..+...+.++.+..+ ...+...+..+.+.+||+||++.+...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998887666666654333 445566777888999999999999989999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      |+++..+++.+..|+..+.+. ...+.|+++|+||+|+...+.+..++...++...+++++++||+++.|+.++|++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999988887654 3456899999999999766666777778888888999999999999999999999988


Q ss_pred             HHHH
Q 027417          174 EIYN  177 (223)
Q Consensus       174 ~~~~  177 (223)
                      .+.+
T Consensus       161 ~~~~  164 (180)
T cd04137         161 EIEK  164 (180)
T ss_pred             HHHH
Confidence            7643

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.97  E-value=4.5e-31  Score=188.12  Aligned_cols=192  Identities=28%  Similarity=0.513  Sum_probs=176.5

Q ss_pred             ccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhh
Q 027417            5 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYY   84 (223)
Q Consensus         5 ~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~   84 (223)
                      ...+.+.+..||++|+|..++||||+|++++-+-+...+..++|+++-...+.+.++.+.+.+||++|++++..+..+++
T Consensus        11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy   90 (246)
T KOG4252|consen   11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY   90 (246)
T ss_pred             CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence            34556678899999999999999999999999999999999999999888888888889999999999999999999999


Q ss_pred             cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 027417           85 RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNV  164 (223)
Q Consensus        85 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  164 (223)
                      +++.+.++||+-++..||+....|++.+..... .+|.|+|-||+|+.+...+...+++.+++.+++.++-+|+++..|+
T Consensus        91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV  169 (246)
T KOG4252|consen   91 RGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV  169 (246)
T ss_pred             ccccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence            999999999999999999999999999987765 7999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCC
Q 027417          165 TAAFQTVVTEIYNILSRKVMISQELKQKDSSSF  197 (223)
Q Consensus       165 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (223)
                      ..+|..|++++..++.+.....+..++.++.++
T Consensus       170 ~~vF~YLaeK~~q~~kq~~~~~~~~q~sSsn~~  202 (246)
T KOG4252|consen  170 MHVFAYLAEKLTQQKKQSLNANERKQSSSSNST  202 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhccccCCCC
Confidence            999999999999999988876666666555444

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=6.6e-29  Score=186.93  Aligned_cols=163  Identities=38%  Similarity=0.550  Sum_probs=150.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ...+|+++|.+|+|||+|..++.++.+...++||++ +.+...+.+++..+.+.|+||+|++.+..+...+++.+|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            357999999999999999999999999999999977 6667778889999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      ||+++++.||+.+..++..+.+. ....+|+++||||+|+...+.+..++++.++..++++|+++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            99999999999999999998443 44568999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027417          172 VTEIY  176 (223)
Q Consensus       172 ~~~~~  176 (223)
                      ++.+-
T Consensus       161 ~r~~~  165 (196)
T KOG0395|consen  161 VREIR  165 (196)
T ss_pred             HHHHH
Confidence            87663

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=6.4e-29  Score=184.01  Aligned_cols=154  Identities=21%  Similarity=0.395  Sum_probs=123.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..++|+++|++|||||||+++|..+.+. .+.+|.+.+...  +..  ..+.+++|||+|++.+..++..+++.+|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999877664 456676665532  222  45789999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCeEEEEccCCCCCHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-----QGLFFMETSALDSSNVTA  166 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~  166 (223)
                      |||++++.+++.+..|+..+... ...+.|+++|+||+|+.+  .+..+++..+...     ..++++++||++|.|+++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            99999999999998877766443 234689999999999874  3456666665421     234689999999999999


Q ss_pred             HHHHHHH
Q 027417          167 AFQTVVT  173 (223)
Q Consensus       167 ~~~~l~~  173 (223)
                      +|++|..
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=2.3e-28  Score=185.71  Aligned_cols=160  Identities=28%  Similarity=0.464  Sum_probs=133.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      ||+++|++|||||||+++++++.+...+.++.+ ......+.+.+..+.+.+||++|+..+..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888776666643 4455567778888899999999999998888899999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCC-CcccCHHHHHHHHH-HcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           96 ISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKD-AREVTTAEGKALAE-AQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..++...... ..+++++++||++|.|++++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988876543 4799999999999865 34555555554443 4567899999999999999999998


Q ss_pred             HHHH
Q 027417          173 TEIY  176 (223)
Q Consensus       173 ~~~~  176 (223)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            7663

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=1.6e-29  Score=186.62  Aligned_cols=153  Identities=20%  Similarity=0.338  Sum_probs=126.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      .|+++|++|||||||++++.+..+...+.++.+...    ..++...+.+.+||++|++.+...+..+++++|++|+|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            489999999999999999998877777778877543    2334456889999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH----HHHHHHHHHcCCeEEEEccCC------CCCHH
Q 027417           96 ISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT----AEGKALAEAQGLFFMETSALD------SSNVT  165 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~  165 (223)
                      .+++.+++.++.|+..+.... .++|+++|+||+|+...+.+..    .++..+++..++.++++||++      ++|++
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999999988886543 4799999999999876543322    224455666788899998888      99999


Q ss_pred             HHHHHHHH
Q 027417          166 AAFQTVVT  173 (223)
Q Consensus       166 ~~~~~l~~  173 (223)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998863

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.6e-28  Score=183.95  Aligned_cols=159  Identities=21%  Similarity=0.382  Sum_probs=123.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      +..+||+++|.+|||||||++++..+.+. .+.+|.+.+...  +..  ..+.+++||+||++.+..++..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~--~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            44689999999999999999999877664 456777765432  323  4578999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-----CeEEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-----LFFMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  165 (223)
                      +|||++++++++.+..|+..+... ...+.|++|++||+|+...  ...++..+......     +.++++||++|+|+.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999999988877776432 2246899999999998753  33334333221111     246689999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          166 AAFQTVVTEIYN  177 (223)
Q Consensus       166 ~~~~~l~~~~~~  177 (223)
                      ++|++|++.+.+
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999887654

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=3e-28  Score=180.60  Aligned_cols=157  Identities=32%  Similarity=0.579  Sum_probs=132.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|++|||||||+++|+++.+...+.++.. +.........+..+.+++||+||++.+.......++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999888666666643 444555667788899999999999988888888889999999999


Q ss_pred             ECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-----------ccCHHHHHHHHHHcCC-eEEEEccCCC
Q 027417           95 DISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDAR-----------EVTTAEGKALAEAQGL-FFMETSALDS  161 (223)
Q Consensus        95 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  161 (223)
                      |++++.++... ..|+..+..... +.|+++|+||+|+.+..           .+..+++..++...++ +++++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            99999999887 458877766544 79999999999987544           3457788888888887 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVT  173 (223)
Q Consensus       162 ~~i~~~~~~l~~  173 (223)
                      .|+.++|++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999874

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=1.7e-28  Score=182.01  Aligned_cols=155  Identities=22%  Similarity=0.391  Sum_probs=125.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      ||+++|.+|||||||++++.+..+. .+.+|.+....  .+..  ..+.+.+||+||+..+...+..+++.+|++|+|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            6899999999999999999987654 45666665553  2323  45788999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC------CeEEEEccCCCCCHHHHH
Q 027417           96 ISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG------LFFMETSALDSSNVTAAF  168 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~  168 (223)
                      ++++.+++.+..|+..+... ...+.|+++|+||+|+.+  .+..++++.++...+      +.++++||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            99999999999998887643 233589999999999864  356676666654322      258899999999999999


Q ss_pred             HHHHHHHHH
Q 027417          169 QTVVTEIYN  177 (223)
Q Consensus       169 ~~l~~~~~~  177 (223)
                      ++|++.+.+
T Consensus       154 ~~l~~~~~~  162 (169)
T cd04158         154 DWLSRQLVA  162 (169)
T ss_pred             HHHHHHHhh
Confidence            999877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=5.4e-28  Score=183.18  Aligned_cols=147  Identities=21%  Similarity=0.406  Sum_probs=125.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-----CEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-----GKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      +||+++|++|||||||++++.++.+...+.+|++.++....+.+.     +..+.+.+|||+|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888998887777776663     467899999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhc-------------------CCCCCcEEEEEeCCCCCCCcccCHH----HHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTH-------------------SDMNVVTILVGNKSDLKDAREVTTA----EGKALA  146 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-------------------~~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~  146 (223)
                      +|+|||++++.||+.+..|+..+...                   ...+.|++|||||+|+.+.+.++.+    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            99999999999999999999998653                   1246899999999999765555444    355678


Q ss_pred             HHcCCeEEEEccCCC
Q 027417          147 EAQGLFFMETSALDS  161 (223)
Q Consensus       147 ~~~~~~~~~~Sa~~~  161 (223)
                      ++.+++.++.++.++
T Consensus       161 ~~~~~~~i~~~c~~~  175 (202)
T cd04102         161 EQGNAEEINLNCTNG  175 (202)
T ss_pred             HhcCCceEEEecCCc
Confidence            899999888777644

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=5.4e-29  Score=182.86  Aligned_cols=152  Identities=22%  Similarity=0.438  Sum_probs=118.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+++|.+|||||||++++..+.+. .+.++.+.+...  +..  ..+.+.+||+||++.+..++..+++++|++|+|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877775 466777765432  223  3578899999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHH-HHHHH----HHcCCeEEEEccCCCCCHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAE-GKALA----EAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      |++++.+++.+..|+..+... ...+.|+++++||+|+...  ...++ ...+.    ....+.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999998877776432 2236899999999998642  22223 22221    1123457899999999999999


Q ss_pred             HHHHH
Q 027417          169 QTVVT  173 (223)
Q Consensus       169 ~~l~~  173 (223)
                      ++|..
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99863

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=1e-27  Score=184.42  Aligned_cols=167  Identities=30%  Similarity=0.508  Sum_probs=144.4

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ......+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            45566799999999999999999988888888888899898888877777888899999999999999889999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      ++|+|||+++..++..+..|+..+.... .+.|+++++||+|+.+ +....+ ...++...++.++++||++|.|++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999987654 3689999999999864 233333 345677788999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          169 QTVVTEIYNI  178 (223)
Q Consensus       169 ~~l~~~~~~~  178 (223)
                      .+|++.+...
T Consensus       161 ~~ia~~l~~~  170 (215)
T PTZ00132        161 LWLARRLTND  170 (215)
T ss_pred             HHHHHHHhhc
Confidence            9999887643

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=8.3e-29  Score=184.62  Aligned_cols=156  Identities=22%  Similarity=0.397  Sum_probs=121.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..+||+++|++|||||||++++..+.+. .+.+|.+.+...  +..  ..+.+.+||+||++.+...+..+++++|++|+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            4599999999999999999999877664 456776765543  223  34789999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~  166 (223)
                      |+|++++.+++....|+..+... ...+.|++||+||+|+.+.  ...++......     ...+.++++||++|.|+++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  164 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE  164 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence            99999999999998888776443 2246899999999998743  22333322211     1123477899999999999


Q ss_pred             HHHHHHHHH
Q 027417          167 AFQTVVTEI  175 (223)
Q Consensus       167 ~~~~l~~~~  175 (223)
                      +|++|...+
T Consensus       165 ~~~~l~~~~  173 (175)
T smart00177      165 GLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHh
Confidence            999997764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=4.9e-28  Score=181.49  Aligned_cols=160  Identities=21%  Similarity=0.386  Sum_probs=123.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...+||+++|++|||||||++++..+.+.. +.+|.+.++..  +..  ..+.+++||++|++.+..++..+++.+|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET--VEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            345899999999999999999998776653 56676655432  223  4578999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  165 (223)
                      +|+|++++.+++.+..++..+... ...++|+++|+||.|+.+.  ...++......     ...+.++++||++|.|++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999999988877766432 2236899999999998642  23333222211     112357799999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027417          166 AAFQTVVTEIYNI  178 (223)
Q Consensus       166 ~~~~~l~~~~~~~  178 (223)
                      ++|++|.+.+.+.
T Consensus       168 e~~~~l~~~i~~~  180 (182)
T PTZ00133        168 EGLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998877554

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=3.5e-29  Score=184.77  Aligned_cols=164  Identities=31%  Similarity=0.555  Sum_probs=148.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      ...+|++|||+.++|||+|+-.+..+.++..+.||.- +-+...+.++ +..+.+.+|||+|++.|.+++...+..+|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999999999999999999999965 6667778885 9999999999999999999998899999999


Q ss_pred             EEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCCe-EEEE
Q 027417           91 LLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGLF-FMET  156 (223)
Q Consensus        91 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~-~~~~  156 (223)
                      ++||++.++.||+++ .+|+.++..+++ +.|+|+||+|.|+.+.            ..+..+++++++++.|+. |++|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999998 789999999885 7999999999999742            367889999999999965 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH
Q 027417          157 SALDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~~~~~  177 (223)
                      ||++..|++++|+..+..++.
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhc
Confidence            999999999999999887743

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=7e-28  Score=179.30  Aligned_cols=158  Identities=21%  Similarity=0.363  Sum_probs=125.1

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ......++|+++|++|||||||+++|.+..+ ..+.++.+...  ..+.++  .+.+.+||+||++.+...+..+++.+|
T Consensus         9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d   83 (173)
T cd04154           9 KLKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTD   83 (173)
T ss_pred             hcCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence            3445669999999999999999999998744 34556656433  334444  477899999999998888999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCC
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSS  162 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~  162 (223)
                      ++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..+++..+..     ..+++++++||++|.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  161 (173)
T cd04154          84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGE  161 (173)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence            999999999999999998888777543 33479999999999987532  4455555543     245689999999999


Q ss_pred             CHHHHHHHHHH
Q 027417          163 NVTAAFQTVVT  173 (223)
Q Consensus       163 ~i~~~~~~l~~  173 (223)
                      |++++|++|+.
T Consensus       162 gi~~l~~~l~~  172 (173)
T cd04154         162 GLLQGIDWLVD  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=1.7e-27  Score=176.01  Aligned_cols=159  Identities=32%  Similarity=0.384  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+|+|++|||||||+++|.++.+...+..+ ... ......+.+..+.+.+|||+|...+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999998876553332 222 2233345667789999999998887777777789999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcC--CeEEEEccCCCCCHHHHHH
Q 027417           95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKALAEAQG--LFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        95 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~  169 (223)
                      |++++.+++.+. .|+..+..... +.|+++|+||+|+.+....  ..++...++....  .+++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999985 68888876544 7999999999999764432  1233334444333  3799999999999999999


Q ss_pred             HHHHHHH
Q 027417          170 TVVTEIY  176 (223)
Q Consensus       170 ~l~~~~~  176 (223)
                      .+...+.
T Consensus       158 ~~~~~~~  164 (166)
T cd01893         158 YAQKAVL  164 (166)
T ss_pred             HHHHHhc
Confidence            9987654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=2.5e-27  Score=174.13  Aligned_cols=152  Identities=20%  Similarity=0.340  Sum_probs=118.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +|+++|++|||||||+++|.+... ...+.++.+.....  +.  ...+.+.+|||||+..+...+..+++.+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 44566776654332  22  24578899999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhc---CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTH---SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~  166 (223)
                      |++++.+++.+..|+..+...   ...+.|+++|+||+|+.+..  ..++......     ...++++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            999999999988888877543   23479999999999987532  2222222211     1134589999999999999


Q ss_pred             HHHHHHH
Q 027417          167 AFQTVVT  173 (223)
Q Consensus       167 ~~~~l~~  173 (223)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=5.6e-27  Score=174.60  Aligned_cols=154  Identities=25%  Similarity=0.411  Sum_probs=120.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..++|+++|++|+|||||++++..+.+.. +.++.+.++..  +.++  .+.+.+||+||++.+...+..+++.+|++|+
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            35899999999999999999999877654 46666655432  3333  4788999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHH-HHHH----HHcCCeEEEEccCCCCCHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEG-KALA----EAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      |+|+++++++.....|+..+... ...+.|+++++||+|+...  ...++. ..+.    ...+++++++||++|.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            99999999998888777766443 2246899999999998652  233332 2222    23456799999999999999


Q ss_pred             HHHHHHH
Q 027417          167 AFQTVVT  173 (223)
Q Consensus       167 ~~~~l~~  173 (223)
                      +|++|++
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=3.3e-27  Score=174.73  Aligned_cols=153  Identities=21%  Similarity=0.327  Sum_probs=119.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      +|+++|++|||||||++++.+. +...+.+|.+....  .+..  ..+.+.+||+||++.+..++..+++++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 55667777776533  3333  34788999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccC-HHH---HHHHHHHcC--CeEEEEccCCC------C
Q 027417           96 ISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVT-TAE---GKALAEAQG--LFFMETSALDS------S  162 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~-~~~---~~~~~~~~~--~~~~~~Sa~~~------~  162 (223)
                      ++++.+++.+..|+..+.... ..++|+++|+||.|+...+... ..+   ...++...+  +++++|||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            999999999999999886542 2478999999999997643211 111   122232233  45788999998      8


Q ss_pred             CHHHHHHHHHH
Q 027417          163 NVTAAFQTVVT  173 (223)
Q Consensus       163 ~i~~~~~~l~~  173 (223)
                      |+.+.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=3.6e-26  Score=170.14  Aligned_cols=140  Identities=38%  Similarity=0.686  Sum_probs=126.5

Q ss_pred             CCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcC
Q 027417           37 DEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS  116 (223)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  116 (223)
                      +.+...+.+|.|.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            35667788999999988888889999999999999999999999999999999999999999999999999999987665


Q ss_pred             CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417          117 DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       117 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      ....|+++|+||+|+.+.+.+..+++..++...++.|+++||++|.|++++|++|++.+.
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~  142 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLP  142 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            457899999999999876778888999999989999999999999999999999987763

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=8.5e-27  Score=171.10  Aligned_cols=152  Identities=26%  Similarity=0.440  Sum_probs=118.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      +|+++|++|||||||++++.++.+.. ..++.+.+..  .+... ..+.+.+||+||++.+...+..++..+|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999987753 3566554432  33332 45789999999999998889999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHH------HHHcCCeEEEEccCCCCCHHHHH
Q 027417           96 ISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKAL------AEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      .+++.++..+..|+..+... ...+.|+++|+||+|+...  ...++....      +...++++++|||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            99999999998888877543 2247999999999998642  222332221      22234579999999999999999


Q ss_pred             HHHHH
Q 027417          169 QTVVT  173 (223)
Q Consensus       169 ~~l~~  173 (223)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99863

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=4.3e-26  Score=181.04  Aligned_cols=143  Identities=27%  Similarity=0.502  Sum_probs=123.4

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-------------EEEEEEEEeCCCchh
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-------------KEVKAQIWDTAGQER   75 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~D~~G~~~   75 (223)
                      .+....+||+|+|+.|||||||+++|.++.+...+.+|+|.++....+.+++             ..+.+.||||+|++.
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            3456679999999999999999999999988888889999888777666642             568899999999999


Q ss_pred             hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCC------------CCCcEEEEEeCCCCCCCc---c---c
Q 027417           76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD------------MNVVTILVGNKSDLKDAR---E---V  137 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ivv~nK~Dl~~~~---~---~  137 (223)
                      +..++..+++++|++|+|||++++.+|+.+..|+..+.....            .++|++||+||+|+...+   .   +
T Consensus        96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~  175 (334)
T PLN00023         96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN  175 (334)
T ss_pred             hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence            999999999999999999999999999999999999976531            258999999999996542   2   3


Q ss_pred             CHHHHHHHHHHcCC
Q 027417          138 TTAEGKALAEAQGL  151 (223)
Q Consensus       138 ~~~~~~~~~~~~~~  151 (223)
                      ..++++.++++.++
T Consensus       176 ~~e~a~~~A~~~g~  189 (334)
T PLN00023        176 LVDAARQWVEKQGL  189 (334)
T ss_pred             cHHHHHHHHHHcCC
Confidence            68899999999885

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=2.4e-26  Score=173.51  Aligned_cols=157  Identities=20%  Similarity=0.290  Sum_probs=124.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      ....++|+++|++|||||||++++.+..+. .+.++.+...  ..+.+.+  +.+.+||+||+..+...+..+++.+|++
T Consensus        16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~i   90 (190)
T cd00879          16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGI   90 (190)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence            345799999999999999999999987763 4555555433  3344444  6788999999999888889999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----------------cCCeE
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEA----------------QGLFF  153 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~  153 (223)
                      ++|+|+++..+++....|+..+.... ..+.|+++++||+|+..  .+..++.+.....                ..+.+
T Consensus        91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T cd00879          91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV  168 (190)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence            99999999999998888888775432 34699999999999864  4556666665532                22458


Q ss_pred             EEEccCCCCCHHHHHHHHHHH
Q 027417          154 METSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       154 ~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      ++|||+++.|++++|++|.+.
T Consensus       169 ~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         169 FMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEeEecCCCChHHHHHHHHhh
Confidence            999999999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=7.1e-27  Score=171.36  Aligned_cols=151  Identities=23%  Similarity=0.391  Sum_probs=114.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      ||+++|++++|||||++++..+.+. ...++.+.+..  .+..  ..+.+++|||||++.+...+..++..+|++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            6899999999999999999877664 34556555443  2222  34788999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHH-hhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHH----HHcCCeEEEEccCCCCCHHHHHH
Q 027417           96 ISRRQTFDSIGRWLNEL-HTHSDMNVVTILVGNKSDLKDAREVTTAEGK-ALA----EAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~~i-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      ++++.++.....|+..+ ......+.|+++|+||+|+.+..  ...+.. .+.    ...+.+++++||+++.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            99998888776655544 33333469999999999987532  222222 221    11234699999999999999999


Q ss_pred             HHHH
Q 027417          170 TVVT  173 (223)
Q Consensus       170 ~l~~  173 (223)
                      +|++
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9874

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=1.3e-26  Score=169.85  Aligned_cols=151  Identities=22%  Similarity=0.387  Sum_probs=119.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      ||+++|.+|||||||++++.+... ....++.+.+...  +.+.  .+.+.+||+||+..+...+..++..+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998873 4455555554433  3333  4688899999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHHHH
Q 027417           96 ISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      ++++.++.....|+..+... ...+.|+++|+||+|+....  ..++......     ...++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            99999999998888776553 33479999999999987543  2333333322     2346799999999999999999


Q ss_pred             HHHH
Q 027417          170 TVVT  173 (223)
Q Consensus       170 ~l~~  173 (223)
                      +|+.
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=2.3e-26  Score=169.99  Aligned_cols=152  Identities=22%  Similarity=0.403  Sum_probs=117.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC------CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEF------YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      +|+|+|++|||||||+++|.+...      ...+.++.+.+..  .+.++  ...+.+|||||++.+...+..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999986432      1233344444443  33344  4788899999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-------cCCeEEEEccCCC
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-------QGLFFMETSALDS  161 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~  161 (223)
                      +++|+|.+++.+++....|+..+... ...+.|+++++||+|+...  ...++...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            99999999999999988888776543 2347999999999998653  344444444332       2457999999999


Q ss_pred             CCHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVT  173 (223)
Q Consensus       162 ~~i~~~~~~l~~  173 (223)
                      .|+++++++|..
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.94  E-value=1.7e-25  Score=168.06  Aligned_cols=156  Identities=19%  Similarity=0.253  Sum_probs=120.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      +..++|+++|.+|||||||++++.+..+. .+.++.+.+.  ..+.+.  .+.+.+||+||+..+...+..++.++|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            55699999999999999999999987653 3344444332  223333  377889999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------cCCeEEEEcc
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA------------QGLFFMETSA  158 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  158 (223)
                      +|+|++++.++.....|+..+... ...+.|+++|+||+|+..  .++.++.......            ....+++|||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            999999999999888887776543 224689999999999864  3455555443311            1234899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027417          159 LDSSNVTAAFQTVVTE  174 (223)
Q Consensus       159 ~~~~~i~~~~~~l~~~  174 (223)
                      +++.|+++++++|..+
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.94  E-value=1.6e-25  Score=166.79  Aligned_cols=158  Identities=26%  Similarity=0.428  Sum_probs=126.3

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .+..++|+++|..|||||||++++..+... ...||.|.+...  +.+.+  +.+.+||.+|+..+...|..++..+|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~--i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEE--IKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEE--EEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccce--eeeCc--EEEEEEeccccccccccceeecccccee
Confidence            367899999999999999999999976543 356676665544  34444  6788999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH------HcCCeEEEEccCCCCC
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE------AQGLFFMETSALDSSN  163 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~  163 (223)
                      |+|+|.++.+.++.....+..+... ...+.|+++++||.|+.+.  ...++......      ...+.++.|||.+|.|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            9999999999999888877776543 3347999999999998753  45555554432      2234589999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEI  175 (223)
Q Consensus       164 i~~~~~~l~~~~  175 (223)
                      +.+.++||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999998753

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=4.8e-25  Score=160.90  Aligned_cols=151  Identities=23%  Similarity=0.395  Sum_probs=120.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEEC
Q 027417           17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDI   96 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   96 (223)
                      |+|+|++|||||||+++|.+..+...+.++.+.....  ....+  +.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7999999999999999999998888888887766543  22333  7889999999999999999999999999999999


Q ss_pred             CCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCCCHHHHHHH
Q 027417           97 SRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        97 ~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      +++.++.....|+..+... ...++|+++|+||+|+.....  ..+.....     ....++++++|++++.|+++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            9999998888877776443 234689999999999875322  22222111     122357899999999999999999


Q ss_pred             HHH
Q 027417          171 VVT  173 (223)
Q Consensus       171 l~~  173 (223)
                      |.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            864

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=3.9e-25  Score=163.54  Aligned_cols=156  Identities=20%  Similarity=0.183  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh---------chhHhhhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR---------AVTSAYYR   85 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~~   85 (223)
                      .+|+++|++|||||||+++|.+..+.....+..+.+......  ....+.+++|||||+....         ........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            479999999999999999999877643322221222222222  2235788999999973210         01111123


Q ss_pred             CCCEEEEEEECCCHhhH--HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417           86 GAVGALLVYDISRRQTF--DSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN  163 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (223)
                      .+|++|+|+|++++.++  +....|+..+.... .+.|+++|+||+|+.....+.  +...+....+.+++++||++|.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence            36899999999987653  56667888876543 369999999999997544332  24455555677899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEI  175 (223)
Q Consensus       164 i~~~~~~l~~~~  175 (223)
                      ++++|++|.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998775

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.93  E-value=1.6e-24  Score=152.49  Aligned_cols=161  Identities=20%  Similarity=0.356  Sum_probs=131.7

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .+..++|+|+|..||||||++++|.+.. .....|+.|........    ..+++++||++|+...++.|.+||..+|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            4558999999999999999999999755 45556777766655544    668999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccCHHH------HHHHHHHcCCeEEEEccCCCCC
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHT-HSDMNVVTILVGNKSDLKDAREVTTAE------GKALAEAQGLFFMETSALDSSN  163 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~~  163 (223)
                      |+|+|.+++..++.....+..+.. ..-.+.|+++++||.|+..+  ++.++      ..++++...++++.||+.+|++
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~  165 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKALDLEELAKSHHWRLVKCSAVTGED  165 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence            999999999999888777666532 23346899999999998843  22222      2344577889999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEIYNI  178 (223)
Q Consensus       164 i~~~~~~l~~~~~~~  178 (223)
                      +.+-++||+..++++
T Consensus       166 l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  166 LLEGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998874

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=6e-25  Score=164.24  Aligned_cols=154  Identities=23%  Similarity=0.282  Sum_probs=114.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--C-----CCCCCc------cceeEeEEEEEEE-----CCEEEEEEEEeCCCchhhh
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE--F-----YPNSKS------TIGVEFQTQKMDI-----NGKEVKAQIWDTAGQERFR   77 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~--~-----~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~~~~   77 (223)
                      +|+++|++++|||||+++|++..  +     ...+.+      +.|.+........     ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999998732  1     111111      1233333332222     5667889999999999999


Q ss_pred             chhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe---EE
Q 027417           78 AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF---FM  154 (223)
Q Consensus        78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~  154 (223)
                      ..+..+++.+|++|+|+|+++..+++....|.....    .++|+++|+||+|+.+..  ..+...++++..+++   ++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            999999999999999999999777777666654332    368999999999986422  122334556666654   89


Q ss_pred             EEccCCCCCHHHHHHHHHHHH
Q 027417          155 ETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       155 ~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ++||++|.|++++|++|...+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=5e-25  Score=163.20  Aligned_cols=157  Identities=20%  Similarity=0.154  Sum_probs=111.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch----hhhchhHhh---hcCCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE----RFRAVTSAY---YRGAV   88 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~~---~~~~d   88 (223)
                      +|+|+|.+|||||||+++|.+........+..+.......+.+.+ ...+.+|||||..    ....+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999997654322222222222222333333 2478899999963    222223333   34699


Q ss_pred             EEEEEEECCCH-hhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 027417           89 GALLVYDISRR-QTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEA-QGLFFMETSALDSSNV  164 (223)
Q Consensus        89 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  164 (223)
                      ++++|+|++++ .+++.+..|.+.+.....  ..+|+++|+||+|+...... .+....+... .+.+++++||+++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999999 799999999988866532  36899999999998764433 3344445555 3778999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          165 TAAFQTVVTE  174 (223)
Q Consensus       165 ~~~~~~l~~~  174 (223)
                      +++|++|.++
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999999864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=3.2e-24  Score=156.11  Aligned_cols=158  Identities=35%  Similarity=0.511  Sum_probs=128.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+++|.+|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+...+...++.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999887667777777777776677777668899999999999988888889999999999


Q ss_pred             EECCCH-hhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           94 YDISRR-QTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        94 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|+... .++.... .|...+......+.|+++++||+|+.... ........+......+++++||+++.|+.++|++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999887 6666664 67777665544478999999999997643 34444444555556679999999999999999886


Q ss_pred             H
Q 027417          172 V  172 (223)
Q Consensus       172 ~  172 (223)
                      -
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            3

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=8.8e-25  Score=166.82  Aligned_cols=157  Identities=22%  Similarity=0.195  Sum_probs=114.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh---------hhchhH
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER---------FRAVTS   81 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~   81 (223)
                      .+..++|+|+|++|||||||++++++..+.....+..+.+.....+.+.+. ..+.+|||||...         +...+ 
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-  115 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-  115 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence            355689999999999999999999987654332222233333334444432 3688999999622         22221 


Q ss_pred             hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027417           82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS  161 (223)
Q Consensus        82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (223)
                      ..+..+|++++|+|++++.++.....|...+......++|+++|+||+|+.+.....     ......+.+++++||+++
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~  190 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTG  190 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCC
Confidence            235789999999999999888888778777766554568999999999987543221     334455678999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVTE  174 (223)
Q Consensus       162 ~~i~~~~~~l~~~  174 (223)
                      .|+++++++|..+
T Consensus       191 ~gi~~l~~~L~~~  203 (204)
T cd01878         191 EGLDELLEAIEEL  203 (204)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=4.1e-24  Score=158.81  Aligned_cols=154  Identities=23%  Similarity=0.370  Sum_probs=117.4

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      +....++|+|+|++|||||||++++.+..+. ...++.|.+..  .+...+  ..+.+||++|+..+...+..+++.+|+
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            3345799999999999999999999987553 34555554433  333443  678899999998888888889999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC--------eEEEEccCC
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL--------FFMETSALD  160 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~  160 (223)
                      +++|+|+++..+++....|+..+... ...++|+++++||+|+.+...  .++   +....++        +++++||++
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~---i~~~l~~~~~~~~~~~~~~~Sa~~  159 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEE---IAEALNLHDLRDRTWHIQACSAKT  159 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHH---HHHHcCCcccCCCeEEEEEeECCC
Confidence            99999999999998887777665433 334699999999999865322  222   2222332        478999999


Q ss_pred             CCCHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVT  173 (223)
Q Consensus       161 ~~~i~~~~~~l~~  173 (223)
                      |.|++++|++|++
T Consensus       160 ~~gi~~~~~~l~~  172 (173)
T cd04155         160 GEGLQEGMNWVCK  172 (173)
T ss_pred             CCCHHHHHHHHhc
Confidence            9999999999974

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=2.1e-24  Score=174.96  Aligned_cols=164  Identities=19%  Similarity=0.099  Sum_probs=122.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYR   85 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~   85 (223)
                      ....|+|+|.|+||||||+++|++........+.++.......+.+. ....+.+||+||...       ....+...++
T Consensus       157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie  235 (335)
T PRK12299        157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIE  235 (335)
T ss_pred             ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence            34679999999999999999999865443333443444444444442 234678999999632       1222233456


Q ss_pred             CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417           86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN  163 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (223)
                      .++++|+|+|+++.++++.+..|..++..+..  .++|+++|+||+|+........++...++...+.+++++||+++.|
T Consensus       236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G  315 (335)
T PRK12299        236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG  315 (335)
T ss_pred             hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence            79999999999998889999999999877643  3689999999999976544444445555566678899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEIYN  177 (223)
Q Consensus       164 i~~~~~~l~~~~~~  177 (223)
                      +++++++|.+.+.+
T Consensus       316 I~eL~~~L~~~l~~  329 (335)
T PRK12299        316 LDELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999877644

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.93  E-value=1.7e-24  Score=184.04  Aligned_cols=204  Identities=20%  Similarity=0.161  Sum_probs=143.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCch----------hhhchh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE----------RFRAVT   80 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~   80 (223)
                      ...++|+|+|.+|||||||+++|++.... ....++++.+.....+..++..  +.+|||||..          .+..+.
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHH
Confidence            35699999999999999999999987643 2333444444445555566644  5699999952          233332


Q ss_pred             -HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHH-HHHHHcCCeEEEE
Q 027417           81 -SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGK-ALAEAQGLFFMET  156 (223)
Q Consensus        81 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~-~~~~~~~~~~~~~  156 (223)
                       ..+++.+|++|+|+|++++.++..+. ++..+..   .++|+|+|+||+|+.+....  ...+.. .+.....++++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence             23578999999999999988877764 3444332   36899999999999753211  111121 2222234689999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhhhh-------hhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417          157 SALDSSNVTAAFQTVVTEIYNILSRKV-------MISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS  222 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  222 (223)
                      ||++|.|++++|+.+.+.+. ....+.       .........+.|..++++.+++|..|-...||.+..+|+
T Consensus       363 SAk~g~gv~~lf~~i~~~~~-~~~~~i~t~~ln~~~~~~~~~~~~p~~~g~~~k~~y~~q~~~~pp~f~~~~~  434 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALE-SWDTRIPTGRLNAWLGELVAATPPPVRGGKQPRILFATQASTRPPTFVLFTT  434 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHcCCCCCCCCeeeeEEEEECCCCCCCEEEEEeC
Confidence            99999999999999986553 333332       234445566677789999999999999999999877664

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.92  E-value=5e-24  Score=179.88  Aligned_cols=203  Identities=22%  Similarity=0.192  Sum_probs=139.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch-----------
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV-----------   79 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------   79 (223)
                      ...++|+++|.+++|||||+++|++..... ...+.++.+.....+..++  ..+.+|||||.......           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            456899999999999999999999865332 2222223333333444444  36789999996543222           


Q ss_pred             hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHHH----cCCeEE
Q 027417           80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK-ALAEA----QGLFFM  154 (223)
Q Consensus        80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~  154 (223)
                      ....++.+|++|+|+|++++.+..... ++..+..   .+.|+++|+||+|+.+... ..++.. .+...    .+++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCceE
Confidence            123678999999999999887766543 3333322   2689999999999973111 111211 22222    247899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHHHHhhhh-------hhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417          155 ETSALDSSNVTAAFQTVVTEIYNILSRKV-------MISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS  222 (223)
Q Consensus       155 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  222 (223)
                      ++||++|.|++++|+++...+... ..+.       .........+.|..++++.+++|..|....||.+..+||
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~~-~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~~~~n  396 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYENA-NRRISTSKLNRVLEEAVAAHPPPLVNGRRLKIKYATQVGTNPPTFVLFGN  396 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHh-cCcCCHHHHHHHHHHHHHcCCCCCCCCceeeEEEEECCCCCCCEEEEEEc
Confidence            999999999999999998755433 2221       233444556677789999999999999999999988887

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=4.9e-24  Score=156.78  Aligned_cols=152  Identities=19%  Similarity=0.167  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDE---FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      +.|+|+|++|||||||+++|++..   +.....++.+.+.....+.+.+ ...+.+|||||++.+......++..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999999642   2222223333333333444432 357899999999988777777788999999


Q ss_pred             EEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHH---cCCeEEEEccCCCCC
Q 027417           92 LVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEGKALAEA---QGLFFMETSALDSSN  163 (223)
Q Consensus        92 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~  163 (223)
                      +|+|+++   +.+.+.+.    .+... . ..|+++++||+|+.....  ...++..+....   .+.+++++||+++.|
T Consensus        80 ~V~d~~~~~~~~~~~~~~----~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHLE----ILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHHH----HHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   44443332    22211 1 248999999999875321  122333444443   467899999999999


Q ss_pred             HHHHHHHHHH
Q 027417          164 VTAAFQTVVT  173 (223)
Q Consensus       164 i~~~~~~l~~  173 (223)
                      ++++++.+..
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.92  E-value=1.8e-24  Score=150.92  Aligned_cols=173  Identities=27%  Similarity=0.493  Sum_probs=150.3

Q ss_pred             cccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhh
Q 027417            4 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY   83 (223)
Q Consensus         4 ~~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~   83 (223)
                      .+.+...+.-.+||.++|++..|||||+-.++++.++..+..+.|+++..+.+.+.+..+.+.+||.+|++++..+....
T Consensus        10 ~~~~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPia   89 (205)
T KOG1673|consen   10 NSIPAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIA   89 (205)
T ss_pred             CCCcccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCcee
Confidence            34455567778999999999999999999999999988889999999999999999999999999999999999999988


Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC-----cccCHHHHHHHHHHcCCeEEEEcc
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA-----REVTTAEGKALAEAQGLFFMETSA  158 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa  158 (223)
                      -..+-+++++||++.+.+++++..|+++.+...+..+| |+||||.|+--.     ...-..+++.+++..++++|.||+
T Consensus        90 c~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~St  168 (205)
T KOG1673|consen   90 CKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCST  168 (205)
T ss_pred             ecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeec
Confidence            89999999999999999999999999998876664455 789999996421     111234577888999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 027417          159 LDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       159 ~~~~~i~~~~~~l~~~~~~  177 (223)
                      ..+.|+..+|..+..++..
T Consensus       169 s~sINv~KIFK~vlAklFn  187 (205)
T KOG1673|consen  169 SHSINVQKIFKIVLAKLFN  187 (205)
T ss_pred             cccccHHHHHHHHHHHHhC
Confidence            9999999999998887754

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=3.5e-23  Score=159.57  Aligned_cols=170  Identities=36%  Similarity=0.553  Sum_probs=138.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+++|++|||||||+++|.++.+...+.++.+..+...........+.+.+|||+|++++..++..++..+++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            38999999999999999999999999988888877777777666665578899999999999999999999999999999


Q ss_pred             EECCC-HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHc---CCeEEEEc
Q 027417           94 YDISR-RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR------------EVTTAEGKALAEAQ---GLFFMETS  157 (223)
Q Consensus        94 ~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~S  157 (223)
                      +|.++ ..+++....|...+........|+++++||+|+....            ..............   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999 4556666889999888776679999999999998652            22233323222222   23389999


Q ss_pred             cC--CCCCHHHHHHHHHHHHHHHHhhhh
Q 027417          158 AL--DSSNVTAAFQTVVTEIYNILSRKV  183 (223)
Q Consensus       158 a~--~~~~i~~~~~~l~~~~~~~~~~~~  183 (223)
                      ++  ++.++.++|..++..+.+......
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~  192 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEKLV  192 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence            99  999999999999988876655444

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=2.3e-24  Score=155.16  Aligned_cols=134  Identities=23%  Similarity=0.253  Sum_probs=100.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch-----hhhchhHhhhcCCCEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE-----RFRAVTSAYYRGAVGA   90 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~~~~~~~d~~   90 (223)
                      ||+++|++|||||||+++|.+..+.  +.++.+.+       +..     .+|||||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            7999999999999999999987542  23332221       111     589999962     2333333 47899999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  169 (223)
                      |+|+|++++.++.. ..|...+      ..|+++|+||+|+.+ +....+++.++++..+. +++++||++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999988755 3444322      249999999999865 34456677777777776 799999999999999999


Q ss_pred             HHH
Q 027417          170 TVV  172 (223)
Q Consensus       170 ~l~  172 (223)
                      +|+
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=7.4e-23  Score=147.59  Aligned_cols=153  Identities=44%  Similarity=0.767  Sum_probs=122.3

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECC
Q 027417           19 LIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS   97 (223)
Q Consensus        19 i~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   97 (223)
                      |+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+...++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998777 44444553 6666667766677889999999998888888888899999999999999


Q ss_pred             CHhhHHHHHHHH-HHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           98 RRQTFDSIGRWL-NELHTHSDMNVVTILVGNKSDLKDAREVTTAE-GKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        98 ~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ++.+++....|. .........+.|+++++||+|+.......... .........++++++|+.++.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999999988873 23333445579999999999987644333322 4455566678899999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=6.4e-23  Score=151.53  Aligned_cols=153  Identities=20%  Similarity=0.174  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      .|+|+|++|+|||||+++|....+.....++.+.+.....+... +....+.+|||||+..+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999887665433333333333333332 13567889999999998888888889999999999


Q ss_pred             ECCCHh---hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHH------HcCCeEEEEccCCCCCH
Q 027417           95 DISRRQ---TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT-TAEGKALAE------AQGLFFMETSALDSSNV  164 (223)
Q Consensus        95 d~~~~~---s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~i  164 (223)
                      |+++..   +++.+.    .+..   .+.|+++|+||+|+.+..... .+....+..      ...++++++|++++.|+
T Consensus        82 d~~~~~~~~~~~~~~----~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (168)
T cd01887          82 AADDGVMPQTIEAIK----LAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI  154 (168)
T ss_pred             ECCCCccHHHHHHHH----HHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence            999843   333222    2222   368999999999987432111 111111111      11357999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          165 TAAFQTVVTEI  175 (223)
Q Consensus       165 ~~~~~~l~~~~  175 (223)
                      .+++++|.+..
T Consensus       155 ~~l~~~l~~~~  165 (168)
T cd01887         155 DDLLEAILLLA  165 (168)
T ss_pred             HHHHHHHHHhh
Confidence            99999998765

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=1.3e-23  Score=151.50  Aligned_cols=148  Identities=17%  Similarity=0.229  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh------hchhHhhh--cC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF------RAVTSAYY--RG   86 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------~~~~~~~~--~~   86 (223)
                      |+|+++|.|+||||||+|+|++........|..+.+.....+.+.+  ..+.++|+||.-+.      ......++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999886655556666666666777766  56679999994222      22333333  68


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      .|++|+|+|+++.+.--.+   ..++...   ++|+|+++||+|+.+...+.. ....+++.+++|++++||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~r~l~l---~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNLYL---TLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHH---HHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHHHHH---HHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            9999999999985432222   2233322   699999999999876444322 35667788899999999999999999


Q ss_pred             HHHHH
Q 027417          167 AFQTV  171 (223)
Q Consensus       167 ~~~~l  171 (223)
                      ++++|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=5.4e-24  Score=162.10  Aligned_cols=153  Identities=22%  Similarity=0.266  Sum_probs=103.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC-----------chhhhch
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG-----------QERFRAV   79 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~   79 (223)
                      +...++|+++|.+|||||||+++|.+..+.....+  +++.....+...    .+.+|||||           .+.+...
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE   79 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence            34568999999999999999999998776544444  344443333332    578999999           4556555


Q ss_pred             hHhhhc----CCCEEEEEEECCCHhhH-H---------HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 027417           80 TSAYYR----GAVGALLVYDISRRQTF-D---------SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL  145 (223)
Q Consensus        80 ~~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  145 (223)
                      +..++.    .++++++|+|.+....+ +         .-......+.   ..++|+++|+||+|+....   .+...++
T Consensus        80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~  153 (201)
T PRK04213         80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEI  153 (201)
T ss_pred             HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHH
Confidence            555553    35788888887653211 0         0011122222   2368999999999986533   3345556


Q ss_pred             HHHcCC---------eEEEEccCCCCCHHHHHHHHHHHHH
Q 027417          146 AEAQGL---------FFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       146 ~~~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      +..+++         +++++||++| |+++++++|...+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence            666664         4899999999 99999999987663

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=6.3e-23  Score=166.22  Aligned_cols=161  Identities=21%  Similarity=0.130  Sum_probs=117.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh----hchhHh---hhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF----RAVTSA---YYR   85 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~~~~---~~~   85 (223)
                      ....|+|+|.|+||||||+++|++........+.++.......+.+.+ ...+.+||+||....    ..+...   .+.
T Consensus       156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhie  234 (329)
T TIGR02729       156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIE  234 (329)
T ss_pred             ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence            347899999999999999999998654333333334444444444443 356789999996421    123333   345


Q ss_pred             CCCEEEEEEECCCH---hhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027417           86 GAVGALLVYDISRR---QTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD  160 (223)
Q Consensus        86 ~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (223)
                      .++++|+|+|+++.   .+++.+..|.+++..+..  .++|+++|+||+|+..... ..+..+.+.+..+.+++++||++
T Consensus       235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAkt  313 (329)
T TIGR02729       235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALT  313 (329)
T ss_pred             hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccC
Confidence            79999999999986   678888888888765532  3689999999999976432 23445566667788899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEI  175 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~  175 (223)
                      +.|+++++++|.+.+
T Consensus       314 g~GI~eL~~~I~~~l  328 (329)
T TIGR02729       314 GEGLDELLYALAELL  328 (329)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.90  E-value=1.1e-22  Score=148.75  Aligned_cols=147  Identities=17%  Similarity=0.188  Sum_probs=109.3

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc------hhHhhhc--CCCEE
Q 027417           19 LIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA------VTSAYYR--GAVGA   90 (223)
Q Consensus        19 i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~~   90 (223)
                      |+|.+|+|||||++++.+........++++.+.....+.+++  ..+.+|||||+..+..      ++..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998765444445445555555555554  5688999999876543      3455554  89999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |+|+|++++...   ..|...+..   .++|+++++||+|+.....+... ...++..++++++++||.++.|+.+++++
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            999999986543   234434433   26899999999999765444333 45677778899999999999999999999


Q ss_pred             HHHH
Q 027417          171 VVTE  174 (223)
Q Consensus       171 l~~~  174 (223)
                      |.+.
T Consensus       152 l~~~  155 (158)
T cd01879         152 IAEL  155 (158)
T ss_pred             HHHH
Confidence            8765

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=7.2e-23  Score=173.06  Aligned_cols=204  Identities=20%  Similarity=0.173  Sum_probs=137.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc----------h-
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA----------V-   79 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~-   79 (223)
                      ...++|+|+|.+|+|||||+++|++..... ...+.++.+.....+...+  ..+.+|||||......          . 
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            457999999999999999999999765322 2222222222223333344  4567999999533211          1 


Q ss_pred             hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH----HHcCCeEEE
Q 027417           80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALA----EAQGLFFME  155 (223)
Q Consensus        80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~  155 (223)
                      ...+++.+|++|+|+|++++.+..... +...+..   .+.|+++|+||+|+.+... ..+...++.    ....+++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEE
Confidence            123568899999999999887665543 2333322   2689999999999874221 111111222    223578999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHHHHhh------hhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417          156 TSALDSSNVTAAFQTVVTEIYNILSR------KVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS  222 (223)
Q Consensus       156 ~Sa~~~~~i~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  222 (223)
                      +||+++.|++++++.+.+...+...+      +..........+.|..++++.+++|..|.+..||.+..+||
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~~~~q~~~~pp~f~~~~n  396 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEAVERHPPPLVKGRRLKIKYATQVGTNPPTFVLFVN  396 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHHHcCCCCCCCCeeeeEEEEEcCCCCCCEEEEEeC
Confidence            99999999999999998655433221      11233444555677789999999999999999999988887

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.90  E-value=6.8e-23  Score=167.41  Aligned_cols=155  Identities=23%  Similarity=0.217  Sum_probs=112.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch---------hhhchhHh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE---------RFRAVTSA   82 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~   82 (223)
                      ...++|+|+|.+|||||||+|+|++........+..+.+.....+.+.+ ...+.+|||+|..         .+...+ .
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-E  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence            3458999999999999999999998765433333334445555565642 2478899999962         232222 2


Q ss_pred             hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027417           83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS  162 (223)
Q Consensus        83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (223)
                      .+.++|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+.....+     ... .....+++++||++|.
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg~  338 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTGE  338 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCCC
Confidence            4688999999999999988888777766665554446899999999998643221     111 1223468999999999


Q ss_pred             CHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTE  174 (223)
Q Consensus       163 ~i~~~~~~l~~~  174 (223)
                      |++++++.|...
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998753

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.90  E-value=5.1e-23  Score=155.90  Aligned_cols=149  Identities=21%  Similarity=0.220  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc--CCCCCCC------------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchh
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR--DEFYPNS------------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT   80 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~   80 (223)
                      .+|+++|.+++|||||+++|++  +.+....            ..+.+.+.......+....+.+.+|||||++.+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            5899999999999999999997  4443322            1223455555555555566789999999999999999


Q ss_pred             HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHH-------HcCCe
Q 027417           81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAE-------AQGLF  152 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~  152 (223)
                      ..+++.+|++++|+|+++.. +.....|+..+..   .++|+++|+||+|+.+.+. ...++..++..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2333334444332   2689999999999975332 12344444442       23678


Q ss_pred             EEEEccCCCCCHHHH
Q 027417          153 FMETSALDSSNVTAA  167 (223)
Q Consensus       153 ~~~~Sa~~~~~i~~~  167 (223)
                      ++++||++|.|+.+.
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999887544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.90  E-value=5.1e-22  Score=138.38  Aligned_cols=163  Identities=22%  Similarity=0.346  Sum_probs=134.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh-hchhHhhhcCCCE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYP--NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF-RAVTSAYYRGAVG   89 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-~~~~~~~~~~~d~   89 (223)
                      ..-||+++|..++|||++++.|+.++..+  ...+|+...+....-+-.+..-.+.|+||.|...+ ..+..+++.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            45799999999999999999998776544  33355443333322223445557889999997776 7788899999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      +++||+..+++||+.+......|.+.. +..+|+++.+||+|+.+.+++..+.+..+++...+..+++++.+...+-+.|
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence            999999999999999887777776553 4569999999999999989999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027417          169 QTVVTEI  175 (223)
Q Consensus       169 ~~l~~~~  175 (223)
                      ..++.++
T Consensus       168 ~~l~~rl  174 (198)
T KOG3883|consen  168 TYLASRL  174 (198)
T ss_pred             HHHHHhc
Confidence            9998776

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.9e-23  Score=149.11  Aligned_cols=159  Identities=21%  Similarity=0.387  Sum_probs=131.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .....+|+++|-.++||||++..|..+++... .||.|.......+    ..+.+++||.+|++.++.+|.+|+.+.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence            46679999999999999999999998887655 8888887776665    368899999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCeEEEEccCCCCCH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEA-----QGLFFMETSALDSSNV  164 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i  164 (223)
                      |+|+|.++++.+...+..+..+..... ...|+++.+||.|+..+  .+..++.+....     ....+..|+|.+|+|+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL  166 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL  166 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence            999999999999999887777765543 57999999999999864  344444333322     2345788999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          165 TAAFQTVVTEIY  176 (223)
Q Consensus       165 ~~~~~~l~~~~~  176 (223)
                      .+.++++...+.
T Consensus       167 ~egl~wl~~~~~  178 (181)
T KOG0070|consen  167 YEGLDWLSNNLK  178 (181)
T ss_pred             HHHHHHHHHHHh
Confidence            999999987764

>TIGR00436 era GTP-binding protein Era

Probab=99.90  E-value=1.6e-22  Score=160.53  Aligned_cols=152  Identities=19%  Similarity=0.151  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchhhh--------chhHhhhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFR--------AVTSAYYRG   86 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~~~~   86 (223)
                      +|+|+|.+|||||||+|+|++..+...+. +.++..... .+...+ ...+.+|||||.....        ......+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999987643222 221222222 222222 2468899999964321        123345689


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVT  165 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  165 (223)
                      +|++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999876654  344444433   2689999999999874222 23344445444454 69999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          166 AAFQTVVTEI  175 (223)
Q Consensus       166 ~~~~~l~~~~  175 (223)
                      ++++.|.+.+
T Consensus       154 ~L~~~l~~~l  163 (270)
T TIGR00436       154 FLAAFIEVHL  163 (270)
T ss_pred             HHHHHHHHhC
Confidence            9999997654

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=1e-22  Score=151.45  Aligned_cols=155  Identities=23%  Similarity=0.186  Sum_probs=108.1

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----hhch---hHhhhcCCCEEE
Q 027417           19 LIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FRAV---TSAYYRGAVGAL   91 (223)
Q Consensus        19 i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~---~~~~~~~~d~~i   91 (223)
                      |+|++|||||||+++|.+........+.++.+.....+.+. ....+.+|||||...    ...+   ....++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            58999999999999999876522222222223333333333 145678999999632    1122   234567899999


Q ss_pred             EEEECCCH------hhHHHHHHHHHHHhhcCC-------CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027417           92 LVYDISRR------QTFDSIGRWLNELHTHSD-------MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA  158 (223)
Q Consensus        92 ~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (223)
                      +|+|++++      .+++....|...+.....       .+.|+++|+||+|+..................+.+++++||
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999998      578888888777765432       36999999999999765443333233444455677999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027417          159 LDSSNVTAAFQTVVTE  174 (223)
Q Consensus       159 ~~~~~i~~~~~~l~~~  174 (223)
                      +++.|++++++.+...
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999998754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.89  E-value=3.7e-22  Score=145.57  Aligned_cols=146  Identities=24%  Similarity=0.233  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch--------hHhhhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV--------TSAYYR   85 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~   85 (223)
                      ++|+++|++|+|||||++++.+..... ...++.+...........  ...+.+|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999876422 222232333333334334  356789999996554321        224567


Q ss_pred             CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417           86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  165 (223)
                      .+|++++|+|++++.+......|..      ....|+++|+||+|+.+....       .....+.+++++||+++.|+.
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            8999999999999877766554433      236999999999998764433       334456789999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          166 AAFQTVVTEI  175 (223)
Q Consensus       166 ~~~~~l~~~~  175 (223)
                      +++++|...+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999987643

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=7.9e-22  Score=165.50  Aligned_cols=154  Identities=23%  Similarity=0.244  Sum_probs=114.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch--------hHh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV--------TSA   82 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~   82 (223)
                      ...++|+|+|++|||||||+++|++.... ....++++.+.....+.+++  ..+.+|||||.......        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            45689999999999999999999986532 22334434555555666665  45689999997554322        235


Q ss_pred             hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027417           83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS  162 (223)
Q Consensus        83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (223)
                      +++.+|++|+|+|++++.+++..  |+..+..   .+.|+++|+||+|+.+.      +...++...+.+++.+||++ .
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~  346 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-L  346 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-C
Confidence            67899999999999998887765  6665532   36899999999998643      12345566778899999998 6


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       163 ~i~~~~~~l~~~~~~~~  179 (223)
                      |++++|+.|.+.+.+..
T Consensus       347 gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       347 KIKALVDLLTQKINAFY  363 (442)
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999998876654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.89  E-value=2.7e-21  Score=171.67  Aligned_cols=202  Identities=18%  Similarity=0.150  Sum_probs=139.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----------hhchh-
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----------FRAVT-   80 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~-   80 (223)
                      ..++|+|+|.+|||||||+++|++.... ....++++.+.....+.+++.  .+.+|||||...          +..+. 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999987642 222333344444445555654  456999999532          22221 


Q ss_pred             HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHH----cCCeEEE
Q 027417           81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA-LAEA----QGLFFME  155 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~  155 (223)
                      ...++.+|++|+|+|++++.+...+..+ ..+..   .++|+++|+||+|+.+...  .+.... +...    ...+++.
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i~-~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKVM-SMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            2346889999999999998777766433 33332   3689999999999975321  111111 2111    1346799


Q ss_pred             EccCCCCCHHHHHHHHHHHHHHHHhh------hhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417          156 TSALDSSNVTAAFQTVVTEIYNILSR------KVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS  222 (223)
Q Consensus       156 ~Sa~~~~~i~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  222 (223)
                      +||++|.|++++++.+.+.+.+...+      +..........+.|..++++.+++|..|-...||.+..+||
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~~p~~~g~~~ki~y~~q~~~~Pp~f~~f~~  673 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPHPLRGGKQPRILFATQASTRPPRFVIFTT  673 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCCCCccCCeeeeEEEEECCCCCCCEEEEEcC
Confidence            99999999999999998876542221      22233444556667788999999999999999999887765

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=3e-21  Score=160.37  Aligned_cols=159  Identities=18%  Similarity=0.150  Sum_probs=115.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----hhchhHhh---hcCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FRAVTSAY---YRGA   87 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~---~~~~   87 (223)
                      ..|+|+|.|+||||||+++|++........+.++.......+.+. ....+.+||+||...    ...+...+   +..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            489999999999999999999876443333443444444444333 135688999999532    22233333   4569


Q ss_pred             CEEEEEEECCCH---hhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027417           88 VGALLVYDISRR---QTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS  162 (223)
Q Consensus        88 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (223)
                      +++|+|+|+++.   ++++....|..++..+..  .++|++||+||+|+...    .+....+.+..+.+++++||+++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999865   677777888888776543  36899999999998432    344556666667789999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTEIYNI  178 (223)
Q Consensus       163 ~i~~~~~~l~~~~~~~  178 (223)
                      |+++++++|.+.+.+.
T Consensus       314 GI~eL~~~L~~~l~~~  329 (424)
T PRK12297        314 GLDELLYAVAELLEET  329 (424)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999998776543

>PRK15494 era GTPase Era; Provisional

Probab=99.88  E-value=8.7e-22  Score=160.61  Aligned_cols=154  Identities=22%  Similarity=0.298  Sum_probs=105.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchh-hhchh-------Hh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQER-FRAVT-------SA   82 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~-------~~   82 (223)
                      +..++|+++|.+|||||||+++|++..+..... +.++.+.....+..++  ..+.+|||||... +..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            455799999999999999999999877643211 1112223333344444  4678999999743 22221       12


Q ss_pred             hhcCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEEccC
Q 027417           83 YYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--LFFMETSAL  159 (223)
Q Consensus        83 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  159 (223)
                      .+..+|++|+|+|..+  +++.. ..|+..+...   +.|+++|+||+|+...   ...+..+++...+  ..++++||+
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            4679999999999765  34444 3455555433   4677889999998642   2345555555444  569999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027417          160 DSSNVTAAFQTVVTEI  175 (223)
Q Consensus       160 ~~~~i~~~~~~l~~~~  175 (223)
                      +|.|++++|++|...+
T Consensus       200 tg~gv~eL~~~L~~~l  215 (339)
T PRK15494        200 SGKNIDGLLEYITSKA  215 (339)
T ss_pred             CccCHHHHHHHHHHhC
Confidence            9999999999998764

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.88  E-value=7.8e-22  Score=137.75  Aligned_cols=114  Identities=33%  Similarity=0.637  Sum_probs=88.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFY--PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      ||+|+|++|||||||+++|.+....  ..+.+..+.+..............+.+||++|.+.+...+...+..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998775  12223334444445566677777799999999988888878789999999999


Q ss_pred             EECCCHhhHHHHHH---HHHHHhhcCCCCCcEEEEEeCCC
Q 027417           94 YDISRRQTFDSIGR---WLNELHTHSDMNVVTILVGNKSD  130 (223)
Q Consensus        94 ~d~~~~~s~~~~~~---~~~~i~~~~~~~~p~ivv~nK~D  130 (223)
                      ||++++.+++.+..   |+..+..... +.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence            99999999999754   5555555433 599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.88  E-value=1.3e-21  Score=147.06  Aligned_cols=156  Identities=20%  Similarity=0.189  Sum_probs=109.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccc--------------eeEeEEEEEEECCEEEEEEEEeCCCchhhhchhH
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTI--------------GVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTS   81 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~   81 (223)
                      +|+|+|.+|+|||||+++|.+...........              +.+.......+......+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            58999999999999999999876654432211              1222222222222346788999999998888888


Q ss_pred             hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHH-----------
Q 027417           82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKALAEA-----------  148 (223)
Q Consensus        82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~-----------  148 (223)
                      .++..+|++++|+|+.++.+... ..++..+..   .+.|+++++||+|+......  ..+...+....           
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            99999999999999988654433 233333332   36999999999998752221  12333333333           


Q ss_pred             ---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          149 ---QGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       149 ---~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                         ...+++++||++|.|+++++++|.+.+
T Consensus       157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence               346799999999999999999998764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=2.2e-21  Score=168.11  Aligned_cols=157  Identities=22%  Similarity=0.259  Sum_probs=116.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCc------cceeEeEEEEEEE-----CCEEEEEEEEeCCCch
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDE-------FYPNSKS------TIGVEFQTQKMDI-----NGKEVKAQIWDTAGQE   74 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~   74 (223)
                      ...+|+|+|+.++|||||+++|+...       +...+..      ..|.++....+.+     ++..+.++||||||+.
T Consensus         2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~   81 (595)
T TIGR01393         2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   81 (595)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence            35799999999999999999998642       1111111      1244444433322     4567899999999999


Q ss_pred             hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe--
Q 027417           75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF--  152 (223)
Q Consensus        75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--  152 (223)
                      .+...+..+++.+|++|+|+|+++..+.+....|...+.    .+.|+++|+||+|+....  ..+...++...+++.  
T Consensus        82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~  155 (595)
T TIGR01393        82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDAS  155 (595)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcc
Confidence            999999999999999999999999777777766655443    268999999999986432  122234555555653  


Q ss_pred             -EEEEccCCCCCHHHHHHHHHHHH
Q 027417          153 -FMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       153 -~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                       ++++||++|.|++++|++|.+.+
T Consensus       156 ~vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       156 EAILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             eEEEeeccCCCCHHHHHHHHHHhC
Confidence             89999999999999999997654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.88  E-value=1.5e-21  Score=159.31  Aligned_cols=205  Identities=20%  Similarity=0.196  Sum_probs=144.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh----------hch-hH
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF----------RAV-TS   81 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~-~~   81 (223)
                      ..++|+|+|.|++|||||+|+|++.+.....+.. |++.......+......+.++||+|..+-          ... ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~a-GTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA-GTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCC-CccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            5799999999999999999999997665444433 56665555554433345669999994432          222 22


Q ss_pred             hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEE
Q 027417           82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMET  156 (223)
Q Consensus        82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~  156 (223)
                      ..+..+|++++|+|++.+-+-+..+    ........+.++|+|+||+|+.+.++...++.+.-..     -..++++.+
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~~----ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDLR----IAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHHH----HHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            3567899999999999876544321    1122223478999999999998764444444332222     224679999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhhhh-------hhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCCC
Q 027417          157 SALDSSNVTAAFQTVVTEIYNILSRKV-------MISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCSS  223 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~  223 (223)
                      ||+++.++..+|+.+.. +++....+.       .........+.+..+|++.+++|-.|-.-+||.+..+||.
T Consensus       332 SA~~~~~i~~l~~~i~~-~~~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf~N~  404 (444)
T COG1160         332 SALTGQGLDKLFEAIKE-IYECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKIKYATQVSTNPPTFVLFGNR  404 (444)
T ss_pred             EecCCCChHHHHHHHHH-HHHHhccccCHHHHHHHHHHHHHhCCCCccCCceEEEEEEecCCCCCCEEEEEecc
Confidence            99999999999999874 555555444       2333344445666679999999999999999999998873

>cd01889 SelB_euk SelB subfamily

Probab=99.88  E-value=1.3e-21  Score=147.99  Aligned_cols=157  Identities=17%  Similarity=0.116  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC----CCCCCC-----CccceeEeEEEEEE----------ECCEEEEEEEEeCCCchh
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD----EFYPNS-----KSTIGVEFQTQKMD----------INGKEVKAQIWDTAGQER   75 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~----~~~~~~-----~~~~~~~~~~~~~~----------~~~~~~~~~l~D~~G~~~   75 (223)
                      ++|+++|++++|||||+++|++.    .+...+     ..|.+.......+.          ..+..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    111111     12222222222222          113367889999999876


Q ss_pred             hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHH-HH-----
Q 027417           76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEGKAL-AE-----  147 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~-~~-----  147 (223)
                      +..........+|++++|+|+++.........+.  +....  +.|+++++||+|+.....  ...++..+. ..     
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444445557789999999998854433333222  11112  579999999999874321  112222221 11     


Q ss_pred             -HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          148 -AQGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       148 -~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                       ..+++++++||+++.|++++++.|..++
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence             2357899999999999999999998765

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=1.5e-21  Score=166.01  Aligned_cols=154  Identities=22%  Similarity=0.195  Sum_probs=105.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchh--------hhchhHhh
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--------FRAVTSAY   83 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~   83 (223)
                      ..++|+|+|.+|||||||+++|++..... ...+..+.+.........+  ..+.+|||||.+.        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            34799999999999999999999876432 2223323333333344444  4578999999652        33445567


Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSS  162 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (223)
                      ++.+|++|+|+|++++.++.. ..|...+..   .++|+++|+||+|+....   .+....+  ..+. ..+++||++|.
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~  185 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR  185 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence            889999999999998765432 334444432   369999999999986421   1222222  2333 25799999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTEIYN  177 (223)
Q Consensus       163 ~i~~~~~~l~~~~~~  177 (223)
                      |++++|++|+..+.+
T Consensus       186 gi~eL~~~i~~~l~~  200 (472)
T PRK03003        186 GVGDLLDAVLAALPE  200 (472)
T ss_pred             CcHHHHHHHHhhccc
Confidence            999999999987744

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.88  E-value=2.1e-21  Score=163.73  Aligned_cols=149  Identities=22%  Similarity=0.220  Sum_probs=110.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch--------hHhh
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV--------TSAY   83 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~   83 (223)
                      ..++|+++|.+|+|||||+++|++.... ....+.++.++....+.+++  ..+.+|||||...+...        ....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            4589999999999999999999987642 22333334444455555555  56789999997654322        2235


Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN  163 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (223)
                      +..+|++|+|+|++++.+++....|..      ..+.|+++|+||+|+.+.....        ...+.+++++||++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999999888776555543      2368999999999997533221        33456799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEIYN  177 (223)
Q Consensus       164 i~~~~~~l~~~~~~  177 (223)
                      +++++++|.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887643

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=2.6e-21  Score=141.75  Aligned_cols=141  Identities=17%  Similarity=0.210  Sum_probs=99.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch----hhhchhHhhhcCCCEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE----RFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~~~~~~d~~i   91 (223)
                      +|+++|.+|+|||||+++|.+... . ...+.+       ..+...    .+|||||..    .+.......++.+|++|
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-c-CccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            799999999999999999886431 1 112211       122222    279999962    22222233468999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC--eEEEEccCCCCCHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL--FFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~  169 (223)
                      +|+|+++..++  +..|+..+.    .+.|+++++||+|+..   ...+...+++...++  |++++||+++.|++++|+
T Consensus        70 ~v~d~~~~~s~--~~~~~~~~~----~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESR--LPAGLLDIG----VSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCcccc--cCHHHHhcc----CCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            99999988765  234544431    2578999999999864   234566677777775  899999999999999999


Q ss_pred             HHHHHHHHH
Q 027417          170 TVVTEIYNI  178 (223)
Q Consensus       170 ~l~~~~~~~  178 (223)
                      .+.+.+.+.
T Consensus       141 ~l~~~~~~~  149 (158)
T PRK15467        141 YLASLTKQE  149 (158)
T ss_pred             HHHHhchhh
Confidence            998766433

>cd01894 EngA1 EngA1 subfamily

Probab=99.87  E-value=1.4e-21  Score=142.57  Aligned_cols=146  Identities=19%  Similarity=0.118  Sum_probs=99.3

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc--------hhHhhhcCCC
Q 027417           18 VLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTSAYYRGAV   88 (223)
Q Consensus        18 ~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~d   88 (223)
                      +++|.+|+|||||+++|.+.... ....+..+.+.........+  ..+.+|||||+..+..        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            48999999999999999986422 11222223333333333443  6788999999776433        3345678899


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVTAA  167 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~  167 (223)
                      ++++|+|..++.+.... .+...+..   .+.|+++|+||+|+......     .......+. +++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999876544332 12222222   25899999999998754322     222344565 6899999999999999


Q ss_pred             HHHHHHH
Q 027417          168 FQTVVTE  174 (223)
Q Consensus       168 ~~~l~~~  174 (223)
                      |++|++.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999864

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=4.9e-21  Score=161.07  Aligned_cols=165  Identities=17%  Similarity=0.093  Sum_probs=113.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----hh---chhHhhh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FR---AVTSAYY   84 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~---~~~~~~~   84 (223)
                      .....|+|+|.|+||||||+++|++........+.++.......+.+.+  ..+.+||+||...    ..   ......+
T Consensus       157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhi  234 (500)
T PRK12296        157 KSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHI  234 (500)
T ss_pred             cccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHH
Confidence            3457899999999999999999998655443334434444444454544  5788999999532    11   1122345


Q ss_pred             cCCCEEEEEEECCCH----hhHHHHHHHHHHHhhcC-----------CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 027417           85 RGAVGALLVYDISRR----QTFDSIGRWLNELHTHS-----------DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ  149 (223)
Q Consensus        85 ~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  149 (223)
                      ..+|++|+|+|+++.    +.++.+..|..++..+.           ...+|+|+|+||+|+.+.... .+.........
T Consensus       235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~  313 (500)
T PRK12296        235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEAR  313 (500)
T ss_pred             HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHc
Confidence            789999999999853    34555555555554332           136899999999999754332 22223333455


Q ss_pred             CCeEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 027417          150 GLFFMETSALDSSNVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       150 ~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  179 (223)
                      ++++|++||+++.|+++++++|.+.+....
T Consensus       314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        314 GWPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            789999999999999999999998776544

>PRK11058 GTPase HflX; Provisional

Probab=99.87  E-value=4.4e-21  Score=160.18  Aligned_cols=158  Identities=21%  Similarity=0.215  Sum_probs=110.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh--hchhH------hhhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF--RAVTS------AYYR   85 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~~~~~------~~~~   85 (223)
                      .++|+|+|.+|||||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|..+.  ...+.      ..++
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            368999999999999999999987654333333344444445555442 25679999996321  12222      2357


Q ss_pred             CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCH
Q 027417           86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNV  164 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i  164 (223)
                      .+|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+.....   ... . ....+.+ ++.+||++|.|+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~-~-~~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRI-D-RDEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHH-H-HHhcCCCceEEEeCCCCCCH
Confidence            899999999999998888776555555444444789999999999864211   111 1 1123555 588999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027417          165 TAAFQTVVTEIYN  177 (223)
Q Consensus       165 ~~~~~~l~~~~~~  177 (223)
                      ++++++|...+..
T Consensus       351 deL~e~I~~~l~~  363 (426)
T PRK11058        351 PLLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999987744

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.87  E-value=1.2e-20  Score=162.97  Aligned_cols=154  Identities=18%  Similarity=0.192  Sum_probs=110.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      ..+.++|+++|++++|||||+++|.+..+.....+..+.+.....+.+++. ..++||||||++.|..++...+..+|++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            356789999999999999999999987776554443344444444444332 2678999999999999998889999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-------C--CeEEEEccCCC
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-------G--LFFMETSALDS  161 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~  161 (223)
                      |+|+|+++...-+....+ ...   ...+.|+++++||+|+...   ..++....+...       +  .+++++||++|
T Consensus       163 ILVVda~dgv~~qT~e~i-~~~---~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG  235 (587)
T TIGR00487       163 VLVVAADDGVMPQTIEAI-SHA---KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG  235 (587)
T ss_pred             EEEEECCCCCCHhHHHHH-HHH---HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence            999999873222222222 111   2236899999999998643   223333332222       2  46999999999


Q ss_pred             CCHHHHHHHHH
Q 027417          162 SNVTAAFQTVV  172 (223)
Q Consensus       162 ~~i~~~~~~l~  172 (223)
                      .|+++++++|.
T Consensus       236 eGI~eLl~~I~  246 (587)
T TIGR00487       236 DGIDELLDMIL  246 (587)
T ss_pred             CChHHHHHhhh
Confidence            99999999986

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01895 EngA2 EngA2 subfamily

Probab=99.87  E-value=1.2e-20  Score=139.72  Aligned_cols=155  Identities=23%  Similarity=0.188  Sum_probs=102.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CccceeEeEEEEEEECCEEEEEEEEeCCCchhh----------hc-hhH
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNS-KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF----------RA-VTS   81 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~-~~~   81 (223)
                      .++|+++|++|+|||||+++|++....... .+..........+...+  ..+.+|||||....          .. ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            579999999999999999999986533222 22222222233334444  34679999995432          10 112


Q ss_pred             hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHc----CCeEEEE
Q 027417           82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAE-GKALAEAQ----GLFFMET  156 (223)
Q Consensus        82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~----~~~~~~~  156 (223)
                      ..+..+|++++|+|++++.+..... ++..+..   .+.|+++++||+|+........+. ...+....    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            3457899999999999987755432 2233222   258999999999987643222222 22233333    3679999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 027417          157 SALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~~  174 (223)
                      ||+++.|+.++++.+.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.86  E-value=2.3e-20  Score=141.46  Aligned_cols=156  Identities=17%  Similarity=0.210  Sum_probs=105.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc----------hhhhchh
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ----------ERFRAVT   80 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~   80 (223)
                      .+..++|+|+|++|+|||||+++|++..+.....++.+.+........   ...+.+|||||.          +.+....
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            456799999999999999999999987644444455454443333222   257889999994          3344444


Q ss_pred             HhhhcC---CCEEEEEEECCCHhhHHH--HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCCeE
Q 027417           81 SAYYRG---AVGALLVYDISRRQTFDS--IGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKALAEAQGLFF  153 (223)
Q Consensus        81 ~~~~~~---~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~  153 (223)
                      ..+++.   .+++++++|.+++.+...  +..|+   ..   .+.|+++++||+|+.+..+.  ..++..........++
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~  171 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV  171 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence            555554   467888899887544322  22332   21   26889999999998754222  1222334444446789


Q ss_pred             EEEccCCCCCHHHHHHHHHHHH
Q 027417          154 METSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       154 ~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      +++||+++.|++++++.|...+
T Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        172 ILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            9999999999999999987655

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.86  E-value=2.4e-21  Score=134.13  Aligned_cols=154  Identities=23%  Similarity=0.420  Sum_probs=125.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..+.+.++|-.+||||||++.+..+.+.....|+.|++...    +....+.+.+||.||+..++..|+.|.+.++++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            45789999999999999999999888888888888876654    34466889999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--------CeEEEEccCCCCC
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--------LFFMETSALDSSN  163 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~  163 (223)
                      |+|..+++.++..+..+..+... .-.++|+++.|||.|+..+  .+...   +..+.|        +-+|.+|+++..|
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~---li~rmgL~sitdREvcC~siScke~~N  169 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIA---LIERMGLSSITDREVCCFSISCKEKVN  169 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHH---HHHHhCccccccceEEEEEEEEcCCcc
Confidence            99999998888877766665433 3347999999999999865  22222   222233        3479999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEI  175 (223)
Q Consensus       164 i~~~~~~l~~~~  175 (223)
                      |+-+..||+++-
T Consensus       170 id~~~~Wli~hs  181 (186)
T KOG0075|consen  170 IDITLDWLIEHS  181 (186)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.86  E-value=9.4e-21  Score=144.39  Aligned_cols=155  Identities=21%  Similarity=0.188  Sum_probs=100.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----ccceeEeEEEEEE-----------------------EC--C----
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK-----STIGVEFQTQKMD-----------------------IN--G----   60 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~-----~~~~~~~~~~~~~-----------------------~~--~----   60 (223)
                      ++|+++|+.|+|||||+.+|.+...+....     .+....+....+.                       ..  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            589999999999999999997642211111     1111111111110                       00  0    


Q ss_pred             EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH----hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      ....+.||||||++.+...+...+..+|++++|+|++++    .+++.+..|    ... . ..|+++|+||+|+.....
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~-~-~~~iiivvNK~Dl~~~~~  154 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM-G-LKHIIIVQNKIDLVKEEQ  154 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc-C-CCcEEEEEEchhccCHHH
Confidence            126789999999998888888888899999999999874    233333222    211 1 257899999999875322


Q ss_pred             c--CHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          137 V--TTAEGKALAEA---QGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       137 ~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      .  ..++.+.+...   .+++++++||++|.|++++|+.|.+.+
T Consensus       155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            1  12333344333   256799999999999999999987644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=2.2e-20  Score=154.35  Aligned_cols=162  Identities=22%  Similarity=0.113  Sum_probs=114.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh-------hchhHhhhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF-------RAVTSAYYRG   86 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~   86 (223)
                      ...|+|+|.|+||||||+|+|++........+.++.......+.+.+ ...+.++||||....       .......+..
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            34899999999999999999998665433334434444444444432 235789999996431       1112234688


Q ss_pred             CCEEEEEEECC---CHhhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEEccC
Q 027417           87 AVGALLVYDIS---RRQTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--LFFMETSAL  159 (223)
Q Consensus        87 ~d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  159 (223)
                      +|++++|+|++   +...++....|++++..+..  ..+|+++|+||+|+.....+ .+....+....+  .+++.+||+
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            99999999998   45667777888887766532  35899999999998753332 333444545444  468999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027417          160 DSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       160 ~~~~i~~~~~~l~~~~~~  177 (223)
                      ++.|++++++.|.+.+.+
T Consensus       317 tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CCcCHHHHHHHHHHHhhh
Confidence            999999999999887754

>cd04163 Era Era subfamily

Probab=99.86  E-value=1.7e-20  Score=137.76  Aligned_cols=156  Identities=22%  Similarity=0.131  Sum_probs=102.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc--------hhHhhhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTSAYYR   85 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~   85 (223)
                      ..+|+++|++|||||||++++.+.......... .................+.+|||||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC-CceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            578999999999999999999987543222211 1111122222333346788999999644322        2344578


Q ss_pred             CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCH
Q 027417           86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNV  164 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i  164 (223)
                      .+|++++|+|.+++.+. ....+...+...   +.|+++|+||+|+........+....+.... ..+++++|++++.|+
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            89999999999987221 112233333322   5899999999998743332333344444444 357999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          165 TAAFQTVVTE  174 (223)
Q Consensus       165 ~~~~~~l~~~  174 (223)
                      +++++.|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.86  E-value=1.8e-20  Score=162.37  Aligned_cols=152  Identities=20%  Similarity=0.223  Sum_probs=112.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDE---FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      +.|+++|++++|||||+++|++..   +..+...+++.+.....+..++  ..+.+||+||++.|...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            479999999999999999999733   3333334444555444555555  77899999999999888888899999999


Q ss_pred             EEEECCC---HhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHc----CCeEEEEccCCC
Q 027417           92 LVYDISR---RQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV--TTAEGKALAEAQ----GLFFMETSALDS  161 (223)
Q Consensus        92 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~  161 (223)
                      +|+|+++   +.+++.+.    .+..   .++| +++|+||+|+.+...+  ..++...+....    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999998   45554432    2221   2566 9999999999754322  233455555544    578999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVTEI  175 (223)
Q Consensus       162 ~~i~~~~~~l~~~~  175 (223)
                      .|++++++.|...+
T Consensus       152 ~GI~eL~~~L~~l~  165 (581)
T TIGR00475       152 QGIGELKKELKNLL  165 (581)
T ss_pred             CCchhHHHHHHHHH
Confidence            99999999887554

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.86  E-value=1.8e-20  Score=140.13  Aligned_cols=149  Identities=18%  Similarity=0.207  Sum_probs=99.8

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch----------hhhch
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE----------RFRAV   79 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~   79 (223)
                      +....++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++   .+.+|||||..          .+...
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            346678999999999999999999998764333444445444444443333   57899999942          23334


Q ss_pred             hHhhhc---CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcC--Ce
Q 027417           80 TSAYYR---GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEGKALAEAQG--LF  152 (223)
Q Consensus        80 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~~  152 (223)
                      ...+++   .++++++|+|.+++.+..... ++..+..   .++|+++++||+|+..+.+  ...++.++.....+  ..
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence            444554   468999999998865544432 2233332   2689999999999875322  22344455555543  47


Q ss_pred             EEEEccCCCCCHH
Q 027417          153 FMETSALDSSNVT  165 (223)
Q Consensus       153 ~~~~Sa~~~~~i~  165 (223)
                      ++++||++|+|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.85  E-value=3.9e-20  Score=162.10  Aligned_cols=154  Identities=22%  Similarity=0.242  Sum_probs=111.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeE--eEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVE--FQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ....++|+|+|++++|||||+++|....+........+.+  .+...+...+....++||||||++.|..++...+..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            4567899999999999999999999876654333222222  22223333345678999999999999999999999999


Q ss_pred             EEEEEEECCCH---hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-------HHHcC--CeEEEE
Q 027417           89 GALLVYDISRR---QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL-------AEAQG--LFFMET  156 (223)
Q Consensus        89 ~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~  156 (223)
                      ++|+|+|+++.   .+++.+..    +   ...+.|+|+++||+|+....   .++....       ...++  ++++++
T Consensus       321 iaILVVDA~dGv~~QT~E~I~~----~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~V  390 (742)
T CHL00189        321 IAILIIAADDGVKPQTIEAINY----I---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPI  390 (742)
T ss_pred             EEEEEEECcCCCChhhHHHHHH----H---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEE
Confidence            99999999884   34433322    2   22368999999999987532   2222211       22233  689999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 027417          157 SALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~~  174 (223)
                      ||++|.|++++++.|...
T Consensus       391 SAktG~GIdeLle~I~~l  408 (742)
T CHL00189        391 SASQGTNIDKLLETILLL  408 (742)
T ss_pred             ECCCCCCHHHHHHhhhhh
Confidence            999999999999998764

>PRK00089 era GTPase Era; Reviewed

Probab=99.85  E-value=3.1e-20  Score=149.25  Aligned_cols=157  Identities=20%  Similarity=0.182  Sum_probs=103.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh--------chhHhhhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR--------AVTSAYYR   85 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~~~   85 (223)
                      .-.|+|+|++|||||||+|+|++.........+.++......+... ....+.+|||||.....        ......+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            4569999999999999999999876643322221111111112122 23678899999964322        22334568


Q ss_pred             CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCH
Q 027417           86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNV  164 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  164 (223)
                      .+|++++|+|+++..+- .....+..+.   ..+.|+++|+||+|+.............+....+ .+++++||+++.|+
T Consensus        84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv  159 (292)
T PRK00089         84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV  159 (292)
T ss_pred             cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence            89999999999983221 1122223332   2268999999999997433333344445544444 56999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          165 TAAFQTVVTEI  175 (223)
Q Consensus       165 ~~~~~~l~~~~  175 (223)
                      ++++++|...+
T Consensus       160 ~~L~~~L~~~l  170 (292)
T PRK00089        160 DELLDVIAKYL  170 (292)
T ss_pred             HHHHHHHHHhC
Confidence            99999998765

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.85  E-value=5.4e-20  Score=162.54  Aligned_cols=155  Identities=21%  Similarity=0.232  Sum_probs=110.4

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      ...+...|+|+|+.++|||||+++|....+........+.+.....+.+++  ..++||||||+..|..++...+..+|+
T Consensus       286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDi  363 (787)
T PRK05306        286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDI  363 (787)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCE
Confidence            356779999999999999999999998776544333333333333344443  578899999999999999988999999


Q ss_pred             EEEEEECCCH---hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHH--HHHHHHHcC--CeEEEEccCC
Q 027417           90 ALLVYDISRR---QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAE--GKALAEAQG--LFFMETSALD  160 (223)
Q Consensus        90 ~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~--~~~~~~~~~--~~~~~~Sa~~  160 (223)
                      +|+|+|+++.   .+.+.+       ......+.|+|+++||+|+...+.  +..+.  ...++..++  ++++++||++
T Consensus       364 aILVVdAddGv~~qT~e~i-------~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt  436 (787)
T PRK05306        364 VVLVVAADDGVMPQTIEAI-------NHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKT  436 (787)
T ss_pred             EEEEEECCCCCCHhHHHHH-------HHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence            9999999884   333322       112223689999999999965321  11110  011223333  6899999999


Q ss_pred             CCCHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVT  173 (223)
Q Consensus       161 ~~~i~~~~~~l~~  173 (223)
                      |.|++++|++|..
T Consensus       437 G~GI~eLle~I~~  449 (787)
T PRK05306        437 GEGIDELLEAILL  449 (787)
T ss_pred             CCCchHHHHhhhh
Confidence            9999999999875

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=5.6e-21  Score=137.84  Aligned_cols=164  Identities=29%  Similarity=0.518  Sum_probs=143.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++++++|+.|.||||++.+++.+.+...+.+|+|.......+..+...+.+..|||+|++.+..+...++-+..+.|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            45799999999999999999999999999999999999999888877666799999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      ++||++..-++.++..|...+.+.+. ++|+|+.|||.|.... . .....-.+-...++.++++||+++-|...-|-++
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r-~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L  164 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKAR-K-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL  164 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceecccc-c-cccccceeeecccceeEEeecccccccccchHHH
Confidence            99999999999999999999887766 5999999999997642 2 2233334556678899999999999999999999


Q ss_pred             HHHHHHH
Q 027417          172 VTEIYNI  178 (223)
Q Consensus       172 ~~~~~~~  178 (223)
                      ++++...
T Consensus       165 arKl~G~  171 (216)
T KOG0096|consen  165 ARKLTGD  171 (216)
T ss_pred             hhhhcCC
Confidence            9877443

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.84  E-value=1.4e-19  Score=157.16  Aligned_cols=158  Identities=22%  Similarity=0.258  Sum_probs=113.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-----CC------CccceeEeEEEEEEE-----CCEEEEEEEEeCCCc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDE--FYP-----NS------KSTIGVEFQTQKMDI-----NGKEVKAQIWDTAGQ   73 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~   73 (223)
                      +...+|+|+|+.++|||||+++|+...  +..     ..      ....|.+.....+.+     ++..+.++||||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            456799999999999999999998631  110     00      011233333222222     455789999999999


Q ss_pred             hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-
Q 027417           74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-  152 (223)
Q Consensus        74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  152 (223)
                      ..+...+..+++.+|++|+|+|+++....+....|.....    .+.|+++|+||+|+.....  .....++....++. 
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~  158 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDA  158 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCc
Confidence            9999889999999999999999998766666656654332    2689999999999864321  22233444445554 


Q ss_pred             --EEEEccCCCCCHHHHHHHHHHHH
Q 027417          153 --FMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       153 --~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                        ++++||++|.|+.+++++|.+.+
T Consensus       159 ~~vi~iSAktG~GI~~Ll~~I~~~l  183 (600)
T PRK05433        159 SDAVLVSAKTGIGIEEVLEAIVERI  183 (600)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhC
Confidence              89999999999999999998765

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.84  E-value=2.5e-20  Score=140.42  Aligned_cols=159  Identities=22%  Similarity=0.220  Sum_probs=105.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------------CccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNS------------------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQE   74 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   74 (223)
                      ..++|+++|+.++|||||+++|+........                  ....+................++++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4689999999999999999999864321111                  0011112222222212455778899999999


Q ss_pred             hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHH-HHHHHc---
Q 027417           75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGK-ALAEAQ---  149 (223)
Q Consensus        75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~-~~~~~~---  149 (223)
                      .+.......+..+|++|+|+|+.+.-.... ...+..+...   +.|+++++||+|+...+. ...++.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeeccccccccc-cccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            998888888999999999999987543322 2222233222   688999999999883211 0111222 333333   


Q ss_pred             ---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          150 ---GLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       150 ---~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                         .++++++||.+|.|++++++.|.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               35799999999999999999988754

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.84  E-value=7.1e-20  Score=158.83  Aligned_cols=146  Identities=20%  Similarity=0.219  Sum_probs=107.8

Q ss_pred             cCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch------hHhhh--cCCCEEEE
Q 027417           21 GDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV------TSAYY--RGAVGALL   92 (223)
Q Consensus        21 G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~--~~~d~~i~   92 (223)
                      |++|||||||+|+|++........++.+.+.....+..++  ..+++|||||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998776555555555555555555555  45789999998776443      23333  37999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      |+|.++.+..   ..+..++.   ..+.|+++|+||+|+.+.+.+. .+.+.+.+..+++++++||++|.|++++++.+.
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999874321   22222332   2369999999999987644443 346778888999999999999999999999998


Q ss_pred             HHH
Q 027417          173 TEI  175 (223)
Q Consensus       173 ~~~  175 (223)
                      +.+
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=1.7e-19  Score=152.64  Aligned_cols=146  Identities=23%  Similarity=0.190  Sum_probs=103.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh--------hhchhHhhhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--------FRAVTSAYYR   85 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~   85 (223)
                      ++|+|+|.+|||||||+++|.+.... ....+..+.+.......+.+  ..+.+|||||...        .......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987642 12223333344444455555  6789999999776        2333455678


Q ss_pred             CCCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCC
Q 027417           86 GAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSS  162 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  162 (223)
                      .+|++|+|+|++++.+..  .+..|+...      +.|+++|+||+|+.+.    .+...++ ...++. ++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998854332  234444431      6899999999996541    1222333 345664 8999999999


Q ss_pred             CHHHHHHHHHH
Q 027417          163 NVTAAFQTVVT  173 (223)
Q Consensus       163 ~i~~~~~~l~~  173 (223)
                      |+.++++.+..
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999999986

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.83  E-value=9.5e-20  Score=153.89  Aligned_cols=147  Identities=22%  Similarity=0.253  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCc--------hhhhchhHhhhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ--------ERFRAVTSAYYRG   86 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~~~~~~~   86 (223)
                      +|+|+|.+|||||||+++|++..... ...+..+.+.........+  ..+.+|||||.        +.+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            58999999999999999999866422 1222222333334444444  46889999996        3344556667889


Q ss_pred             CCEEEEEEECCCHhhHHH--HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCC
Q 027417           87 AVGALLVYDISRRQTFDS--IGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSN  163 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  163 (223)
                      +|++++|+|..++.+...  +..|+..      .++|+++|+||+|+......    ..+ ...++. +++++||++|.|
T Consensus        79 ad~vl~vvD~~~~~~~~d~~i~~~l~~------~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~g  147 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDEEIAKWLRK------SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRG  147 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHH------hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCC
Confidence            999999999987544332  3334332      26899999999998753321    122 345676 599999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEI  175 (223)
Q Consensus       164 i~~~~~~l~~~~  175 (223)
                      +.++++.+...+
T Consensus       148 v~~ll~~i~~~l  159 (429)
T TIGR03594       148 IGDLLDAILELL  159 (429)
T ss_pred             hHHHHHHHHHhc
Confidence            999999988765

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>COG1159 Era GTPase [General function prediction only]

Probab=99.83  E-value=1.1e-19  Score=141.05  Aligned_cols=158  Identities=20%  Similarity=0.132  Sum_probs=107.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc--------hhHhhh
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTSAYY   84 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~   84 (223)
                      +.--|+|+|.|+||||||+|++++.+....+...-++......+... ...++.++||||......        .....+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            44578999999999999999999988776554332222222223223 367889999999544322        233356


Q ss_pred             cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCC
Q 027417           85 RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSN  163 (223)
Q Consensus        85 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  163 (223)
                      ..+|+++||+|.+++..- .-+..++.+..   .+.|+++++||+|..............+...... .++++||++|.|
T Consensus        84 ~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n  159 (298)
T COG1159          84 KDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN  159 (298)
T ss_pred             ccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence            889999999999985432 11233334433   3689999999999886544223333333333333 499999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEI  175 (223)
Q Consensus       164 i~~~~~~l~~~~  175 (223)
                      ++.+.+.+...+
T Consensus       160 ~~~L~~~i~~~L  171 (298)
T COG1159         160 VDTLLEIIKEYL  171 (298)
T ss_pred             HHHHHHHHHHhC
Confidence            999999987665

>cd00880 Era_like Era (E

Probab=99.83  E-value=1.6e-19  Score=131.36  Aligned_cols=151  Identities=21%  Similarity=0.167  Sum_probs=102.7

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc-------hhHhhhcCCCEE
Q 027417           19 LIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA-------VTSAYYRGAVGA   90 (223)
Q Consensus        19 i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~d~~   90 (223)
                      |+|++|||||||++++.+.... ................... ....+.+||+||......       ....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999986554 2222222222222222222 145788999999665432       344577899999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTA---EGKALAEAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      ++|+|..+........ |.....   ..+.|+++|+||+|+.........   .........+++++++|++++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999987766554 333322   236899999999998764332221   122233445678999999999999999


Q ss_pred             HHHHHHH
Q 027417          168 FQTVVTE  174 (223)
Q Consensus       168 ~~~l~~~  174 (223)
                      +++|.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.82  E-value=5.6e-19  Score=156.74  Aligned_cols=153  Identities=15%  Similarity=0.167  Sum_probs=113.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch----------hHhh
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV----------TSAY   83 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----------~~~~   83 (223)
                      .++|+++|+||||||||+|+|++........  .|++...+...+......+.+|||||..++...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            4789999999999999999999875533333  355666555555556678899999997665321          1223


Q ss_pred             h--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027417           84 Y--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS  161 (223)
Q Consensus        84 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (223)
                      +  ..+|++++|+|.++.+..   ..|..++.+   .+.|+++++||+|+.+.+.+ ....+.+.+.++++++++|++++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence            2  479999999999986442   223344433   26899999999998755444 34567788889999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVTEI  175 (223)
Q Consensus       162 ~~i~~~~~~l~~~~  175 (223)
                      +|++++++.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999987653

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=7.5e-19  Score=120.87  Aligned_cols=156  Identities=22%  Similarity=0.423  Sum_probs=126.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      .+++|+.+|-.++||||++..|..... ....||+|++.....+    ..+.+.+||.+|++..+.+|.+++....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            468999999999999999999997554 4567777877666554    56889999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCeEEEEccCCCCCHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-----GLFFMETSALDSSNVTA  166 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  166 (223)
                      |+|..+.+.+++.+..+..+... .-...|+++.+||-|+..+  ...+++.++.+-.     ...+.++++.+|.|+.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            99999998888887776665433 2346888888999999865  4567777665432     23478899999999999


Q ss_pred             HHHHHHHHH
Q 027417          167 AFQTVVTEI  175 (223)
Q Consensus       167 ~~~~l~~~~  175 (223)
                      -|.+|...+
T Consensus       169 glswlsnn~  177 (180)
T KOG0071|consen  169 GLSWLSNNL  177 (180)
T ss_pred             HHHHHHhhc
Confidence            999987643

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.82  E-value=1.5e-18  Score=134.66  Aligned_cols=151  Identities=23%  Similarity=0.210  Sum_probs=102.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh-------chhHhhhcCCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-------AVTSAYYRGAV   88 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d   88 (223)
                      +|+|+|++|+|||||+++|++........+..+.+.....+.+.+  ..+++||+||.....       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998754333333333444455555554  578899999964322       23345789999


Q ss_pred             EEEEEEECCCHh-hHHHHHHHHHHHhh--------------------------------------------c--------
Q 027417           89 GALLVYDISRRQ-TFDSIGRWLNELHT--------------------------------------------H--------  115 (223)
Q Consensus        89 ~~i~v~d~~~~~-s~~~~~~~~~~i~~--------------------------------------------~--------  115 (223)
                      ++++|+|++++. ..+.+...+....-                                            +        
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998865 34333333321100                                            0        


Q ss_pred             -------------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          116 -------------SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       116 -------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                                   ...-+|+++|+||+|+..     .++...++..  .+++++||+++.|++++|+.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                         011368899999999863     3444445443  4589999999999999999988654

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.82  E-value=7.7e-19  Score=151.53  Aligned_cols=155  Identities=19%  Similarity=0.146  Sum_probs=103.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----ccceeEeEEEEEE------------ECCEEEEEEEEeCCCchhhh
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSK----STIGVEFQTQKMD------------INGKEVKAQIWDTAGQERFR   77 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~l~D~~G~~~~~   77 (223)
                      ..-|+++|++++|||||+++|.+..+.....    ++.|.........            ++.....+.+|||||++.+.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            4569999999999999999999876643322    2222222211110            00011238899999999999


Q ss_pred             chhHhhhcCCCEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc------------CHHH-
Q 027417           78 AVTSAYYRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV------------TTAE-  141 (223)
Q Consensus        78 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~------------~~~~-  141 (223)
                      .++..+++.+|++++|+|+++   +.+++.+..+    ..   .+.|+++++||+|+.+....            ..+. 
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            999999999999999999997   5555554322    11   26899999999998642100            0000 


Q ss_pred             -----------HHHHHH------------Hc--CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          142 -----------GKALAE------------AQ--GLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       142 -----------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                                 ...+.+            .+  .++++++||++|+|+++++++|....
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                       011111            11  35799999999999999999886544

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=6.4e-19  Score=156.58  Aligned_cols=156  Identities=20%  Similarity=0.147  Sum_probs=104.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh--------hhchhHh
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--------FRAVTSA   82 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~   82 (223)
                      .....+|+|+|.++||||||+++|++...... ..+.|++..............+.+|||||.+.        +......
T Consensus       272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~  350 (712)
T PRK09518        272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI  350 (712)
T ss_pred             cccCcEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence            34467899999999999999999998654221 22234444443333322235688999999653        3334455


Q ss_pred             hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCC
Q 027417           83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDS  161 (223)
Q Consensus        83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  161 (223)
                      ++..+|++|+|+|.++.-+... ..|...+..   .++|+++|+||+|+.+..    ....++. ..+. ..+++||++|
T Consensus       351 ~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g  421 (712)
T PRK09518        351 AVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHG  421 (712)
T ss_pred             HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCC
Confidence            6789999999999987422111 234444433   378999999999986421    1222221 2333 2578999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVTEIY  176 (223)
Q Consensus       162 ~~i~~~~~~l~~~~~  176 (223)
                      .|+++++++|++.+.
T Consensus       422 ~GI~eLl~~i~~~l~  436 (712)
T PRK09518        422 RGVGDLLDEALDSLK  436 (712)
T ss_pred             CCchHHHHHHHHhcc
Confidence            999999999988764

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.81  E-value=2.4e-19  Score=150.97  Aligned_cols=159  Identities=19%  Similarity=0.140  Sum_probs=107.0

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC----------------------C-----CccceeEeEEEEEEECC
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARD--EFYPN----------------------S-----KSTIGVEFQTQKMDING   60 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~--~~~~~----------------------~-----~~~~~~~~~~~~~~~~~   60 (223)
                      .....++|+++|+.++|||||+.+|+..  .....                      .     ....|.+.......+..
T Consensus         3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~   82 (426)
T TIGR00483         3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET   82 (426)
T ss_pred             CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence            3566799999999999999999999852  21100                      0     01113444444455555


Q ss_pred             EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHH-HHHHHhhcCCCCCcEEEEEeCCCCCCCcc---
Q 027417           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGR-WLNELHTHSDMNVVTILVGNKSDLKDARE---  136 (223)
Q Consensus        61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~---  136 (223)
                      ..+.+.||||||++.+.......+..+|++|+|+|+++++++..... +...+..... ..|+++++||+|+.+..+   
T Consensus        83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHHH
Confidence            56789999999999887777777889999999999998754321111 1111222222 357889999999974221   


Q ss_pred             -cCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 027417          137 -VTTAEGKALAEAQG-----LFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus       137 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  169 (223)
                       ...++...+++..+     ++++++||++|.|+.+.+.
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence             12345556666655     5799999999999987553

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=8.4e-20  Score=130.02  Aligned_cols=162  Identities=22%  Similarity=0.341  Sum_probs=122.3

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCC-------CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhh
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEF-------YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY   83 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~   83 (223)
                      ....+.|+|+|..++|||||+.++.....       +....+|.|.+.....  +.  ...+.+||.+|++..+++|..+
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~--v~--~~~l~fwdlgGQe~lrSlw~~y   89 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE--VC--NAPLSFWDLGGQESLRSLWKKY   89 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee--ec--cceeEEEEcCChHHHHHHHHHH
Confidence            34457899999999999999998764311       1122244444443333  33  4578899999999999999999


Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHh-hcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH------HcCCeEEEE
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTILVGNKSDLKDAREVTTAEGKALAE------AQGLFFMET  156 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~  156 (223)
                      +..++++|+++|.++++.|+.....++.+- ...-.+.|+++.+||-|+.+.  +..++......      +..+++.++
T Consensus        90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pv  167 (197)
T KOG0076|consen   90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPV  167 (197)
T ss_pred             HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccc
Confidence            999999999999999999988876666653 334558999999999998853  33444443332      224669999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHH
Q 027417          157 SALDSSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~~~~~~  178 (223)
                      ||.+|+||++..+|+...+.++
T Consensus       168 Sal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  168 SALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999888665

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.81  E-value=2.9e-19  Score=150.48  Aligned_cols=157  Identities=20%  Similarity=0.161  Sum_probs=104.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------------------CccceeEeEEEEEEECCE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-----------------------------KSTIGVEFQTQKMDINGK   61 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   61 (223)
                      ....++|+++|++++|||||+++|++..-....                             ....|++.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            456799999999999999999999843211100                             012245555555556556


Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc----
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDARE----  136 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----  136 (223)
                      .+.+.+|||||++.+.......+..+|++|+|+|++++.++... ..++..+... . ..|+++++||+|+.+...    
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHHH
Confidence            68899999999988876666667899999999999873222111 1222222222 1 246899999999875221    


Q ss_pred             cCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 027417          137 VTTAEGKALAEAQG-----LFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus       137 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  169 (223)
                      ...++...++...+     ++++++||++|.|+.+.++
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            12244555555555     4699999999999997654

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.81  E-value=6.5e-22  Score=142.23  Aligned_cols=167  Identities=33%  Similarity=0.614  Sum_probs=140.3

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-EEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      ....++++|+|.-|+|||+++.+++...+...+..++|+++..+....+. ..++++|||++|++++..+..-+++.+.+
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            46689999999999999999999999888888888988887666555544 44678899999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhc----CCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCe-EEEEccCCCCC
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTH----SDMNVVTILVGNKSDLKDAREV-TTAEGKALAEAQGLF-FMETSALDSSN  163 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~-~~~~Sa~~~~~  163 (223)
                      .++|||+++..+|+.+..|.+.+...    .....|+|+..||||....... .......+.+.+++. ++++|++.+.+
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn  181 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN  181 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence            99999999999999999999997543    2345788999999998753222 235566788888876 99999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEIYN  177 (223)
Q Consensus       164 i~~~~~~l~~~~~~  177 (223)
                      +.|+-..++++++-
T Consensus       182 i~Ea~r~lVe~~lv  195 (229)
T KOG4423|consen  182 IPEAQRELVEKILV  195 (229)
T ss_pred             hhHHHHHHHHHHHh
Confidence            99999999887743

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=3.6e-19  Score=145.41  Aligned_cols=149  Identities=22%  Similarity=0.141  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh---------hchhHhhhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF---------RAVTSAYYR   85 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~~   85 (223)
                      ..|+|+|.|+||||||+|+|++.......+.+ |++..............+.++||+|.+..         .......+.
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~p-GvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~   82 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTP-GVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE   82 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCC-CCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence            67999999999999999999998766544433 55555444333334456889999996532         223445678


Q ss_pred             CCCEEEEEEECCCHhhH--HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCC
Q 027417           86 GAVGALLVYDISRRQTF--DSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSS  162 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  162 (223)
                      .||++|||+|....-+-  +.+..|+.      ..++|+|+|+||+|-..    ..+.+.+ ...+|.. ++.+||.+|.
T Consensus        83 eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvNK~D~~~----~e~~~~e-fyslG~g~~~~ISA~Hg~  151 (444)
T COG1160          83 EADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVNKIDNLK----AEELAYE-FYSLGFGEPVPISAEHGR  151 (444)
T ss_pred             hCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEEcccCch----hhhhHHH-HHhcCCCCceEeehhhcc
Confidence            99999999999874332  22333333      22699999999999652    1222333 3455665 9999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTEI  175 (223)
Q Consensus       163 ~i~~~~~~l~~~~  175 (223)
                      |+.+++++++..+
T Consensus       152 Gi~dLld~v~~~l  164 (444)
T COG1160         152 GIGDLLDAVLELL  164 (444)
T ss_pred             CHHHHHHHHHhhc
Confidence            9999999998765

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.81  E-value=9.1e-19  Score=133.35  Aligned_cols=117  Identities=21%  Similarity=0.357  Sum_probs=87.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC-CEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA-VGALLVY   94 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~-d~~i~v~   94 (223)
                      +|+++|++|||||||+++|..+.+......+ ............+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999988765544332 2222221221123456789999999999988888889998 9999999


Q ss_pred             ECCCH-hhHHHHHHHHHHHhh---cCCCCCcEEEEEeCCCCCC
Q 027417           95 DISRR-QTFDSIGRWLNELHT---HSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        95 d~~~~-~s~~~~~~~~~~i~~---~~~~~~p~ivv~nK~Dl~~  133 (223)
                      |..+. .++..+..|+..+..   ....++|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99997 677777666554432   1234799999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.80  E-value=9.5e-19  Score=143.32  Aligned_cols=155  Identities=25%  Similarity=0.158  Sum_probs=113.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhH--------hh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTS--------AY   83 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~--------~~   83 (223)
                      ..-++|+|+|.|+||||||+|+|.+.......+-. |+++......++-.++.+.+.||+|...-....+        ..
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~-GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIA-GTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCC-CCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            45699999999999999999999998776555544 6666666555555558888999999665433322        34


Q ss_pred             hcCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027417           84 YRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS  162 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (223)
                      +..+|.+++|+|.+.+.+ .+....+      ....++|+++|.||.|+.........     ....+.+++.+|+++++
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~~~~------~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~  362 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLALIE------LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGE  362 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHHHHH------hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCcc
Confidence            578999999999999632 2221122      33447999999999999865332111     22234568999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTEIYNI  178 (223)
Q Consensus       163 ~i~~~~~~l~~~~~~~  178 (223)
                      |++.+.+.|.+.+...
T Consensus       363 Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         363 GLDALREAIKQLFGKG  378 (454)
T ss_pred             CHHHHHHHHHHHHhhc
Confidence            9999999998877665

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.80  E-value=7.3e-19  Score=134.48  Aligned_cols=149  Identities=25%  Similarity=0.210  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCC------------------------C-----ccceeEeEEEEEEECCEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNS------------------------K-----STIGVEFQTQKMDINGKEVKAQ   66 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~------------------------~-----~~~~~~~~~~~~~~~~~~~~~~   66 (223)
                      ||+|+|++|+|||||+++|++..-....                        +     ...|.+.......+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            6899999999999999999753221110                        0     0013333333334434456788


Q ss_pred             EEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc----CHHHH
Q 027417           67 IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV----TTAEG  142 (223)
Q Consensus        67 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~  142 (223)
                      +|||||+..+.......+..+|++|+|+|++++..-... .....+... . ..++|+|+||+|+.+....    ...+.
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            999999988776666778999999999999875322211 111222221 1 2457889999998743211    12344


Q ss_pred             HHHHHHcCC---eEEEEccCCCCCHHHH
Q 027417          143 KALAEAQGL---FFMETSALDSSNVTAA  167 (223)
Q Consensus       143 ~~~~~~~~~---~~~~~Sa~~~~~i~~~  167 (223)
                      +.+....+.   +++++||++|.|+.+.
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            455556663   4899999999999754

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.80  E-value=2.1e-18  Score=126.90  Aligned_cols=150  Identities=20%  Similarity=0.234  Sum_probs=99.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----------hhchhHhhhc
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----------FRAVTSAYYR   85 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~   85 (223)
                      .|+++|++|+|||||++.+.+........++.+.+........++   .+.+|||||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996555444455545555444444443   778999999432          3333344443


Q ss_pred             ---CCCEEEEEEECCCHhh--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHH--HcCCeEEEE
Q 027417           86 ---GAVGALLVYDISRRQT--FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKALAE--AQGLFFMET  156 (223)
Q Consensus        86 ---~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~  156 (223)
                         +.+++++++|..+..+  ...+..|+...      +.|+++++||+|+......  .........+  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               4678899999987532  23334454432      4899999999998643221  1112222222  334579999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 027417          157 SALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~~  174 (223)
                      |++++.++.+++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.80  E-value=2.3e-18  Score=121.64  Aligned_cols=134  Identities=24%  Similarity=0.300  Sum_probs=98.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC----chhhhchhHhhhcCCCEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----QERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~~i   91 (223)
                      ||+++|+.|||||||+++|.+...  .+..|..+.       +.+     .++||||    +..+..........+|+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~-------~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE-------YYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE-------ecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999998654  233331111       111     2589999    3445555556667999999


Q ss_pred             EEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHH
Q 027417           92 LVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ  169 (223)
Q Consensus        92 ~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~  169 (223)
                      ++.|.+++.+ |..      .+...  ..+|+|-|+||+|+.. +....+.++++.+..|+. +|++|+.+|+|++++.+
T Consensus        69 ll~dat~~~~~~pP------~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   69 LLQDATEPRSVFPP------GFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             EEecCCCCCccCCc------hhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence            9999998654 221      12122  2589999999999984 234677888888888987 89999999999999998


Q ss_pred             HHH
Q 027417          170 TVV  172 (223)
Q Consensus       170 ~l~  172 (223)
                      .|-
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            873

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK10218 GTP-binding protein; Provisional

Probab=99.79  E-value=4.9e-18  Score=147.07  Aligned_cols=159  Identities=19%  Similarity=0.226  Sum_probs=113.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc--CCCCCCC------------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR--DEFYPNS------------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA   78 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~   78 (223)
                      ...+|+|+|+.++|||||+++|+.  +.+....            ....|.++......+....+.+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            467999999999999999999986  3332211            12346666666666666778999999999999999


Q ss_pred             hhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHH-------HcC
Q 027417           79 VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAE-------AQG  150 (223)
Q Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~  150 (223)
                      .+..+++.+|++|+|+|+.+....+. ..++..+..   .++|+++++||+|+..++. ...++..++..       ...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            99999999999999999987533222 222333222   3688999999999875432 12233444432       234


Q ss_pred             CeEEEEccCCCC----------CHHHHHHHHHHHH
Q 027417          151 LFFMETSALDSS----------NVTAAFQTVVTEI  175 (223)
Q Consensus       151 ~~~~~~Sa~~~~----------~i~~~~~~l~~~~  175 (223)
                      +|++.+||.+|.          ++..+++.|+..+
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            779999999998          5777777666544

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.79  E-value=1.3e-17  Score=120.44  Aligned_cols=158  Identities=22%  Similarity=0.357  Sum_probs=119.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC--------CCCc--cceeEeEEEEEEECCEEEEEEEEeCCCchhhhchh
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP--------NSKS--TIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT   80 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~   80 (223)
                      .....||+|.|+.++||||+++++.......        ....  ++++........+. ....++|++||||+++.-+|
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHHH
Confidence            3456899999999999999999998765311        1111  11222333333333 23567899999999999999


Q ss_pred             HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCeEEEEcc
Q 027417           81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ--GLFFMETSA  158 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa  158 (223)
                      ....+++.+.|+++|.+.+..+ .....+..+.....  +|++|++||.|+...  .+.+.++++.+..  +.+.++.+|
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~~a  160 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEIDA  160 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceeeeec
Confidence            9999999999999999999888 44555555544332  999999999999854  5667777776655  788999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027417          159 LDSSNVTAAFQTVVTE  174 (223)
Q Consensus       159 ~~~~~i~~~~~~l~~~  174 (223)
                      .++++..+.++.+...
T Consensus       161 ~e~~~~~~~L~~ll~~  176 (187)
T COG2229         161 TEGEGARDQLDVLLLK  176 (187)
T ss_pred             ccchhHHHHHHHHHhh
Confidence            9999999999988754

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.79  E-value=2.1e-18  Score=149.46  Aligned_cols=157  Identities=21%  Similarity=0.232  Sum_probs=111.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC--CCCCCC------------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchh
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD--EFYPNS------------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT   80 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~   80 (223)
                      .+|+|+|+.++|||||+++|+..  .+....            ....|.+.......+....+.+.||||||+..|....
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            58999999999999999999862  222111            0112444444444444456889999999999999889


Q ss_pred             HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HcCCe
Q 027417           81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV-TTAEGKALAE-------AQGLF  152 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~  152 (223)
                      ..+++.+|++++|+|+.+.. ......|+..+...   ++|+++++||+|+...+.. ..++..++..       ...++
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            99999999999999998742 33334555555432   6899999999998754321 1233334332       23578


Q ss_pred             EEEEccCCCC----------CHHHHHHHHHHHH
Q 027417          153 FMETSALDSS----------NVTAAFQTVVTEI  175 (223)
Q Consensus       153 ~~~~Sa~~~~----------~i~~~~~~l~~~~  175 (223)
                      ++.+||++|.          |+..+|+.|+..+
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            9999999996          7888988887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.79  E-value=8.6e-18  Score=126.93  Aligned_cols=148  Identities=18%  Similarity=0.147  Sum_probs=99.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCC------CC--------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYP------NS--------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV   79 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   79 (223)
                      .++|+++|+.++|||||+++|++.....      .+        ....|.+.......+......+.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            4899999999999999999998631000      00        012244455555555555667889999999888777


Q ss_pred             hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHc-----C
Q 027417           80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV---TTAEGKALAEAQ-----G  150 (223)
Q Consensus        80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~  150 (223)
                      ....+..+|++++|+|+...-.-.. ...+..+...   ++| +|+++||+|+....+.   ..+++..+....     +
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            7888899999999999987432221 2223333322   455 7788999998642221   123455555544     3


Q ss_pred             CeEEEEccCCCCCHH
Q 027417          151 LFFMETSALDSSNVT  165 (223)
Q Consensus       151 ~~~~~~Sa~~~~~i~  165 (223)
                      ++++++||.+|.|+.
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            679999999998853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.79  E-value=1.1e-17  Score=144.97  Aligned_cols=157  Identities=19%  Similarity=0.143  Sum_probs=102.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----ccceeEeEEEEEEE--CCEE-----E-----EEEEEeCCCchh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK----STIGVEFQTQKMDI--NGKE-----V-----KAQIWDTAGQER   75 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~-----~-----~~~l~D~~G~~~   75 (223)
                      .+.+.|+|+|++++|||||+++|.+........    ++.|.+........  .+..     .     .+++|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            345679999999999999999998765432222    22232222211100  0111     1     268999999999


Q ss_pred             hhchhHhhhcCCCEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc----cCH--------H
Q 027417           76 FRAVTSAYYRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE----VTT--------A  140 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----~~~--------~  140 (223)
                      |..++...+..+|++|+|+|+++   +.+++.+..+    ..   .+.|+++++||+|+.....    ...        .
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            99988888899999999999997   6666655422    11   2689999999999852100    000        0


Q ss_pred             -----------HHHHHHHH---------------cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          141 -----------EGKALAEA---------------QGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       141 -----------~~~~~~~~---------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                                 +.......               ..++++++||++|.|++++++.+...+
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                       00011111               135699999999999999998876443

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.79  E-value=3.3e-18  Score=143.05  Aligned_cols=162  Identities=19%  Similarity=0.160  Sum_probs=104.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc-cceeEeEEE----E------------EEE----CC------EEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKS-TIGVEFQTQ----K------------MDI----NG------KEVK   64 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~-~~~~~~~~~----~------------~~~----~~------~~~~   64 (223)
                      +..++|+++|++++|||||+++|.+......... ..+.+....    .            +..    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            4578999999999999999999976422111000 001111110    0            000    11      1467


Q ss_pred             EEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHH
Q 027417           65 AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEG  142 (223)
Q Consensus        65 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~  142 (223)
                      +++||+||++.|...+......+|++++|+|++++.........+..+....  ..|+++++||+|+.+....  ..++.
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHH
Confidence            8999999999998888888889999999999996431111112222222221  2568999999998753221  12334


Q ss_pred             HHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          143 KALAEAQ---GLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       143 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ..+....   +++++++||++|.|+++++++|...+
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            4444432   57899999999999999999987543

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.78  E-value=1.1e-17  Score=145.71  Aligned_cols=152  Identities=18%  Similarity=0.150  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC---CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEF---YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      -|+++|+.++|||||+++|++...   ..+....++.+.....+... ....+.+|||||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            588999999999999999997432   22222222233222222222 22357899999999998888888899999999


Q ss_pred             EEECCC---HhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHcC---CeEEEEccCCCCC
Q 027417           93 VYDISR---RQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV--TTAEGKALAEAQG---LFFMETSALDSSN  163 (223)
Q Consensus        93 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~  163 (223)
                      |+|+++   +.+.+.+.    .+...   +.| +++|+||+|+.+....  ..++..++....+   .+++++||++|.|
T Consensus        81 VVda~eg~~~qT~ehl~----il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         81 VVACDDGVMAQTREHLA----ILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EEECCCCCcHHHHHHHH----HHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            999987   34443332    22211   345 5789999998753221  1234445554444   6799999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEI  175 (223)
Q Consensus       164 i~~~~~~l~~~~  175 (223)
                      ++++++.|....
T Consensus       154 I~~L~~~L~~~~  165 (614)
T PRK10512        154 IDALREHLLQLP  165 (614)
T ss_pred             CHHHHHHHHHhh
Confidence            999999987543

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.78  E-value=7e-18  Score=130.79  Aligned_cols=164  Identities=20%  Similarity=0.211  Sum_probs=108.7

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-----------
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-----------   75 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-----------   75 (223)
                      ++.+..+.++|+|+|.|++|||||.|.+.+....+......+++....-+... ...++.|+||||.-.           
T Consensus        65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~  143 (379)
T KOG1423|consen   65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMM  143 (379)
T ss_pred             CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHH
Confidence            34556788999999999999999999999999888777665544444444333 456889999999211           


Q ss_pred             -hhchhHhhhcCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-------------cC--
Q 027417           76 -FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDARE-------------VT--  138 (223)
Q Consensus        76 -~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-------------~~--  138 (223)
                       ........+.++|.+++++|+++..  ..+ ...+..+..+.  ++|-|+|+||.|....+.             +.  
T Consensus       144 s~lq~~~~a~q~AD~vvVv~Das~tr--~~l~p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~  219 (379)
T KOG1423|consen  144 SVLQNPRDAAQNADCVVVVVDASATR--TPLHPRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL  219 (379)
T ss_pred             HhhhCHHHHHhhCCEEEEEEeccCCc--CccChHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence             1112234557899999999999621  111 12233334443  588999999999754221             11  


Q ss_pred             -HHHHHHHHHH---------cCC----eEEEEccCCCCCHHHHHHHHHHHH
Q 027417          139 -TAEGKALAEA---------QGL----FFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       139 -~~~~~~~~~~---------~~~----~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                       .+-..++...         .++    .+|.+||++|+|++++-++|...+
T Consensus       220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA  270 (379)
T ss_pred             hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence             1111122111         122    279999999999999999987654

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.78  E-value=4.4e-18  Score=142.23  Aligned_cols=161  Identities=19%  Similarity=0.188  Sum_probs=104.0

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEE----EEE----------------EC--C----E
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQ----KMD----------------IN--G----K   61 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~----~~~----------------~~--~----~   61 (223)
                      +..++.++|+++|+.++|||||+.+|.+...+.... ...|.+....    .+.                .+  +    .
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            456777999999999999999999997632211111 0001111111    000                00  0    1


Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH----hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV  137 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~  137 (223)
                      ...++||||||++.+..........+|++++|+|++++    .+.+.+..    +....  ..|+++|+||+|+.+....
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~----l~~~~--i~~iiVVlNK~Dl~~~~~~  157 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA----LDIIG--IKNIVIVQNKIDLVSKERA  157 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEEeeccccchhH
Confidence            35789999999988877666666788999999999964    33333222    22111  2468999999998753321


Q ss_pred             --CHHHHHHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          138 --TTAEGKALAEAQ---GLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       138 --~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                        ..++...++...   +.+++++||+++.|++++++.|...+
T Consensus       158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence              123344444332   57899999999999999999987544

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.77  E-value=7.4e-18  Score=131.06  Aligned_cols=114  Identities=18%  Similarity=0.171  Sum_probs=81.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-------------CCC---ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYP-------------NSK---STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV   79 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   79 (223)
                      +|+++|++|+|||||+++|+...-..             .+.   ...+.+.......+......+.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            58999999999999999998632110             000   11123333344444445678899999999998888


Q ss_pred             hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      +..+++.+|++|+|+|+.+.... ....++..+...   ++|+++++||+|+..
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence            88899999999999999986443 234444444432   689999999999863

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04167 Snu114p Snu114p subfamily

Probab=99.76  E-value=1.2e-17  Score=128.30  Aligned_cols=113  Identities=24%  Similarity=0.302  Sum_probs=80.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------CccceeEeEEEEEEE-----CCEEEEEEEEeCCCc
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNS-----------------KSTIGVEFQTQKMDI-----NGKEVKAQIWDTAGQ   73 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~   73 (223)
                      +|+|+|+.|+|||||+++|+........                 ....+.+.......+     ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875432210                 011122222222221     345688999999999


Q ss_pred             hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                      ..+......++..+|++|+|+|+.+..+... ..|+.....   .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9988888888999999999999988765543 334444332   258999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.76  E-value=3.2e-17  Score=136.58  Aligned_cols=150  Identities=17%  Similarity=0.143  Sum_probs=99.9

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC--------------CCCccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYP--------------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE   74 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   74 (223)
                      ......++|+++|++++|||||+++|++.....              ......|.+.......+......+.+|||||++
T Consensus         7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence            345667999999999999999999998631100              000122455555555565555678899999999


Q ss_pred             hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHcC
Q 027417           75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREVT---TAEGKALAEAQG  150 (223)
Q Consensus        75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~  150 (223)
                      .|.......+..+|++++|+|++....-.. ...+..+...   ++| +|+++||+|+.+..+..   .++...+....+
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            887777777789999999999987422222 1222222222   567 67889999987432221   234555555554


Q ss_pred             -----CeEEEEccCCCC
Q 027417          151 -----LFFMETSALDSS  162 (223)
Q Consensus       151 -----~~~~~~Sa~~~~  162 (223)
                           ++++++||++|.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T PRK12736        163 FPGDDIPVIRGSALKAL  179 (394)
T ss_pred             CCcCCccEEEeeccccc
Confidence                 579999999983

>COG2262 HflX GTPases [General function prediction only]

Probab=99.76  E-value=5.8e-17  Score=130.75  Aligned_cols=162  Identities=20%  Similarity=0.195  Sum_probs=117.4

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc---------hhhhchh
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ---------ERFRAVT   80 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~   80 (223)
                      .....+.|.++|..++|||||+|+|++........-+.+.+.....+.+.+ +..+.+.||.|.         +.|.+..
T Consensus       188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL  266 (411)
T COG2262         188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL  266 (411)
T ss_pred             cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence            345678999999999999999999998766555454445555666666664 456779999993         2233333


Q ss_pred             HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027417           81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD  160 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (223)
                      +.. ..+|++++|+|++++...+.+..-...+.......+|+|+|.||+|+.....     ............+.+||++
T Consensus       267 EE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~  340 (411)
T COG2262         267 EEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKT  340 (411)
T ss_pred             HHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEecc
Confidence            333 6899999999999997777776666666666555699999999999775322     1111111111589999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~~~~  178 (223)
                      +.|++.+++.|...+...
T Consensus       341 ~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         341 GEGLDLLRERIIELLSGL  358 (411)
T ss_pred             CcCHHHHHHHHHHHhhhc
Confidence            999999999998877544

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.75  E-value=1.3e-17  Score=114.90  Aligned_cols=159  Identities=23%  Similarity=0.317  Sum_probs=119.0

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      .+....++|+++|-.++|||||+..|.+... ....+|.|++....  ... ..+.+++||.+|+...+..|..|+.+.|
T Consensus        12 s~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~v--~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd   87 (185)
T KOG0074|consen   12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKKV--EYD-GTFHLNVWDIGGQRGIRPYWSNYYENVD   87 (185)
T ss_pred             CCCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEEE--eec-CcEEEEEEecCCccccchhhhhhhhccc
Confidence            3457789999999999999999999987443 34456656554433  333 4578999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHh-hcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCeEEEEccCCCC
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTILVGNKSDLKDAREVTTAEGKAL-----AEAQGLFFMETSALDSS  162 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  162 (223)
                      ++|+|+|.++...|+++...+-++. ...-...|+.+.+||-|+..+..  .++...-     .....+.+-+|||.+++
T Consensus        88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~--~eeia~klnl~~lrdRswhIq~csals~e  165 (185)
T KOG0074|consen   88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK--VEEIALKLNLAGLRDRSWHIQECSALSLE  165 (185)
T ss_pred             eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc--hHHHHHhcchhhhhhceEEeeeCcccccc
Confidence            9999999999888998866555554 33445799999999999874322  2221111     11123457889999999


Q ss_pred             CHHHHHHHHHH
Q 027417          163 NVTAAFQTVVT  173 (223)
Q Consensus       163 ~i~~~~~~l~~  173 (223)
                      |+.+-.++++.
T Consensus       166 g~~dg~~wv~s  176 (185)
T KOG0074|consen  166 GSTDGSDWVQS  176 (185)
T ss_pred             CccCcchhhhc
Confidence            99999988864

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.75  E-value=3.8e-17  Score=136.29  Aligned_cols=150  Identities=17%  Similarity=0.132  Sum_probs=99.8

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCC-------------CCCC-CccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEF-------------YPNS-KSTIGVEFQTQKMDINGKEVKAQIWDTAGQE   74 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~-------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   74 (223)
                      +...+.++|+++|+.++|||||+++|++...             +... ....|.+.....+.++.....+.||||||++
T Consensus         7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence            3456679999999999999999999974210             0000 0112445555556665566778899999999


Q ss_pred             hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHcC
Q 027417           75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKDAREVT---TAEGKALAEAQG  150 (223)
Q Consensus        75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~  150 (223)
                      .|..........+|++++|+|+.+....+.. ..+..+...   ++|.+ +++||+|+.+..+..   .++.+.++...+
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            9877777777889999999999874222221 222222222   46655 689999987532211   234566666654


Q ss_pred             -----CeEEEEccCCCC
Q 027417          151 -----LFFMETSALDSS  162 (223)
Q Consensus       151 -----~~~~~~Sa~~~~  162 (223)
                           ++++++||.++.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 689999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.75  E-value=5.4e-17  Score=135.31  Aligned_cols=153  Identities=18%  Similarity=0.139  Sum_probs=101.4

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCC-------------CC-CCCccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEF-------------YP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAG   72 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   72 (223)
                      ...+..+.++|+++|++++|||||+++|++...             +. ......|.+.......+......+.|+||||
T Consensus         5 ~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPG   84 (396)
T PRK12735          5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPG   84 (396)
T ss_pred             hcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCC
Confidence            345567789999999999999999999986210             00 0001224555555555555556788999999


Q ss_pred             chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHHH
Q 027417           73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKDAREV---TTAEGKALAEA  148 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~  148 (223)
                      ++.|.......+..+|++++|+|+.+...-+. ..++..+..   .++|.+ +++||+|+.+..+.   ..++...+...
T Consensus        85 h~~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~  160 (396)
T PRK12735         85 HADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK  160 (396)
T ss_pred             HHHHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence            99887777777889999999999987432222 222233322   257755 57999998742221   12345555555


Q ss_pred             cC-----CeEEEEccCCCCC
Q 027417          149 QG-----LFFMETSALDSSN  163 (223)
Q Consensus       149 ~~-----~~~~~~Sa~~~~~  163 (223)
                      .+     ++++++||.++.+
T Consensus       161 ~~~~~~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        161 YDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             cCCCcCceeEEecchhcccc
Confidence            43     6799999999853

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.75  E-value=5.9e-17  Score=138.14  Aligned_cols=153  Identities=18%  Similarity=0.178  Sum_probs=111.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh------hhchhHhhh--c
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER------FRAVTSAYY--R   85 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~------~~~~~~~~~--~   85 (223)
                      ..+|+++|+||+|||||.|+|++.+......|..+++.........+  .+++++|.||.-+      .......++  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            45699999999999999999999877666666555555555555554  4578999999332      222333443  4


Q ss_pred             CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417           86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  165 (223)
                      .+|++|-|+|.+|.+.--.+.-.+.      ..+.|+|++.|++|..+.+-+ .....++.+.+|+|+++++|++|.|++
T Consensus        81 ~~D~ivnVvDAtnLeRnLyltlQLl------E~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYLTLQLL------ELGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchHHHHHHHHHHHH------HcCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            6899999999998754333222222      227899999999998764433 334466778899999999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          166 AAFQTVVTEI  175 (223)
Q Consensus       166 ~~~~~l~~~~  175 (223)
                      ++...+.+..
T Consensus       154 ~l~~~i~~~~  163 (653)
T COG0370         154 ELKRAIIELA  163 (653)
T ss_pred             HHHHHHHHhc
Confidence            9999887533

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.75  E-value=1.3e-16  Score=117.69  Aligned_cols=160  Identities=18%  Similarity=0.229  Sum_probs=110.6

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC----------chhhhch
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----------QERFRAV   79 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~   79 (223)
                      +.+...-|+++|.++||||||||+|++.........|.|.+.....+.+++.   +.++|.||          .+.+...
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence            3446689999999999999999999997755555666688777777777764   66999999          4456666


Q ss_pred             hHhhhc---CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH---HHHHHHHHHcCCe-
Q 027417           80 TSAYYR---GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT---AEGKALAEAQGLF-  152 (223)
Q Consensus        80 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~-  152 (223)
                      ...|+.   +..++++++|...+-.-... ..++.+..   .++|+++++||+|.....+...   ..+..+....... 
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~  172 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQ  172 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccc
Confidence            666764   35678899999886443222 22222222   2799999999999886433321   1111222222222 


Q ss_pred             -EEEEccCCCCCHHHHHHHHHHHHH
Q 027417          153 -FMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       153 -~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                       ++..|+.++.|++++...|.+.+.
T Consensus       173 ~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         173 WVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             eEEEEecccccCHHHHHHHHHHHhh
Confidence             677899999999999998887653

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=5.7e-17  Score=127.20  Aligned_cols=161  Identities=19%  Similarity=0.169  Sum_probs=115.7

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc-hh----hhc---hh
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ-ER----FRA---VT   80 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-~~----~~~---~~   80 (223)
                      ..+...+.|+|.|.|+||||||++++++......+.|+++-......+.  ..+.+++++||||. ++    .+.   ..
T Consensus       163 ~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe--~~~~R~QvIDTPGlLDRPl~ErN~IE~qA  240 (346)
T COG1084         163 AIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFE--RGYLRIQVIDTPGLLDRPLEERNEIERQA  240 (346)
T ss_pred             CCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeee--cCCceEEEecCCcccCCChHHhcHHHHHH
Confidence            3455678999999999999999999999988887777766555555543  34467889999992 11    111   11


Q ss_pred             Hhhhc-CCCEEEEEEECCC--HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEE
Q 027417           81 SAYYR-GAVGALLVYDISR--RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMET  156 (223)
Q Consensus        81 ~~~~~-~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  156 (223)
                      ...++ -.++++|+||.+.  ..+.+....++.++.....  .|+++|.||+|..+...+  +++.......+. ....+
T Consensus       241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~  316 (346)
T COG1084         241 ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKI  316 (346)
T ss_pred             HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccce
Confidence            22233 4778999999987  4567777888888887765  899999999998854333  333333344444 47889


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 027417          157 SALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ++..+.+++.+.+.+...+
T Consensus       317 ~~~~~~~~d~~~~~v~~~a  335 (346)
T COG1084         317 SATKGCGLDKLREEVRKTA  335 (346)
T ss_pred             eeeehhhHHHHHHHHHHHh
Confidence            9999999998887776654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.74  E-value=1.1e-17  Score=128.92  Aligned_cols=147  Identities=20%  Similarity=0.127  Sum_probs=93.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC--------------------------CCC---ccceeEeEEEEEEECCEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYP--------------------------NSK---STIGVEFQTQKMDINGKEVKAQ   66 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~--------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~   66 (223)
                      +|+|+|++++|||||+.+|+...-..                          ...   ...|.+.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            58999999999999999996421100                          000   1113334444444444567889


Q ss_pred             EEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh-------hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC--ccc
Q 027417           67 IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ-------TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA--REV  137 (223)
Q Consensus        67 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--~~~  137 (223)
                      +|||||+..+...+...+..+|++|+|+|+++..       ..+....| ...... . .+|+++++||+|+...  ...
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL-G-VKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc-C-CCeEEEEEEccccccccccHH
Confidence            9999999887777777778899999999999842       11222222 222222 1 3688999999998732  111


Q ss_pred             ----CHHHHHHHHHHcC-----CeEEEEccCCCCCHH
Q 027417          138 ----TTAEGKALAEAQG-----LFFMETSALDSSNVT  165 (223)
Q Consensus       138 ----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  165 (223)
                          ..++...+....+     ++++++||++|.|++
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                1122233344443     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.74  E-value=1.1e-17  Score=139.50  Aligned_cols=162  Identities=27%  Similarity=0.314  Sum_probs=122.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...+||+|+|+.|+||||||-+|+...+.+...+-....  .....+....+..+++|++..+.........++.+|++.
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i--~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI--LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc--ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            345999999999999999999999988876555332211  111333445567889999866665566677789999999


Q ss_pred             EEEECCCHhhHHHH-HHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcC-Ce-EEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSI-GRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAE-GKALAEAQG-LF-FMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~~-~~~~Sa~~~~~i~  165 (223)
                      ++|+++++.+++.+ .+|+..++....  .+.|+|+||||+|..+....+.+. ..-+...+. +. +++|||++-.++.
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~  164 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS  164 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence            99999999999999 579999987752  379999999999998765443333 333444332 33 7999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          166 AAFQTVVTEI  175 (223)
Q Consensus       166 ~~~~~l~~~~  175 (223)
                      ++|....+.+
T Consensus       165 e~fYyaqKaV  174 (625)
T KOG1707|consen  165 ELFYYAQKAV  174 (625)
T ss_pred             hhhhhhhhee
Confidence            9998776544

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=4.6e-18  Score=117.52  Aligned_cols=157  Identities=24%  Similarity=0.356  Sum_probs=116.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      +...+|+++|-.|+||||++.++.-++.. ...|++|.+......    ....+++||.+|+.+.+..|..++.+.|++|
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEE
Confidence            36789999999999999998888766654 345565665544332    6688999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHH-HHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-----HHHHcCCeEEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSIGR-WLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA-----LAEAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~  165 (223)
                      +|+|.+|......... ++..+.+..-.+..+++++||.|....  ....|+..     -.+..-+.+|++||.+|+|++
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld  168 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD  168 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence            9999999877665543 344444333334667788999997642  22333222     122333669999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          166 AAFQTVVTEI  175 (223)
Q Consensus       166 ~~~~~l~~~~  175 (223)
                      +.++||.+-+
T Consensus       169 ~~~DWL~~~l  178 (182)
T KOG0072|consen  169 PAMDWLQRPL  178 (182)
T ss_pred             HHHHHHHHHH
Confidence            9999998765

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.73  E-value=1.2e-16  Score=124.59  Aligned_cols=157  Identities=18%  Similarity=0.146  Sum_probs=112.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh-------hchhHhhhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF-------RAVTSAYYRG   86 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~   86 (223)
                      ...|.++|-|++|||||+++|...+......++++.......+.+++ ...+++-|.||.-.-       .......++.
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHh
Confidence            35688999999999999999998776555555545555555444443 234889999994332       1122334578


Q ss_pred             CCEEEEEEECCCH---hhHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCC
Q 027417           87 AVGALLVYDISRR---QTFDSIGRWLNELHTH--SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALD  160 (223)
Q Consensus        87 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~  160 (223)
                      ++.+++|+|++.+   ..++.++....++..+  .-...|.++|+||+|+.++.   .....++++.+.-+ ++++||++
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecc
Confidence            9999999999998   7777777666665433  23468999999999986431   22235666666655 99999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTE  174 (223)
Q Consensus       161 ~~~i~~~~~~l~~~  174 (223)
                      ++|+.++++.|.+.
T Consensus       352 ~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  352 GEGLEELLNGLREL  365 (366)
T ss_pred             ccchHHHHHHHhhc
Confidence            99999999887653

>CHL00071 tufA elongation factor Tu

Probab=99.72  E-value=3.1e-16  Score=131.30  Aligned_cols=154  Identities=16%  Similarity=0.132  Sum_probs=102.1

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------CCccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPN--------------SKSTIGVEFQTQKMDINGKEVKAQIWDTAG   72 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   72 (223)
                      -+......++|+++|++++|||||+++|++......              .....|.+.......+......+.|+||||
T Consensus         5 ~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPG   84 (409)
T CHL00071          5 KFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPG   84 (409)
T ss_pred             hccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCC
Confidence            344566779999999999999999999986411100              001124444444445544556778999999


Q ss_pred             chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHH
Q 027417           73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV---TTAEGKALAEA  148 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~  148 (223)
                      +..+.......+..+|++++|+|+.....-.. ...+..+..   .++| +|+++||+|+.+..+.   ..++...+...
T Consensus        85 h~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~  160 (409)
T CHL00071         85 HADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK  160 (409)
T ss_pred             hHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence            98887777778889999999999986432221 222222222   2567 7788999999753221   12344555554


Q ss_pred             cC-----CeEEEEccCCCCCH
Q 027417          149 QG-----LFFMETSALDSSNV  164 (223)
Q Consensus       149 ~~-----~~~~~~Sa~~~~~i  164 (223)
                      .+     ++++++||.+|.++
T Consensus       161 ~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        161 YDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             hCCCCCcceEEEcchhhcccc
Confidence            43     67999999998754

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.71  E-value=5.7e-16  Score=119.45  Aligned_cols=153  Identities=18%  Similarity=0.164  Sum_probs=95.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcc-----------------------ceeEeEEEE-------------EEEC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKST-----------------------IGVEFQTQK-------------MDIN   59 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~   59 (223)
                      ||+++|+.++|||||+.+|..+.+.......                       .|.+.....             ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            5899999999999999999976554322100                       011100000             0011


Q ss_pred             CEEEEEEEEeCCCchhhhchhHhhhc--CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027417           60 GKEVKAQIWDTAGQERFRAVTSAYYR--GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV  137 (223)
Q Consensus        60 ~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~  137 (223)
                      .....++++|+||++.+.......+.  .+|++++|+|+.....-. -..++..+..   .++|+++|+||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA---LNIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence            12356889999999888665555553  699999999998753321 1223333322   25899999999998643221


Q ss_pred             C--HHHHHHHHH--------------------------HcCCeEEEEccCCCCCHHHHHHHHH
Q 027417          138 T--TAEGKALAE--------------------------AQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus       138 ~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      .  .++...+..                          ...+|+|.+|+.+|+|++++...|.
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            1  112222222                          1124799999999999999997764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.71  E-value=9e-16  Score=116.41  Aligned_cols=160  Identities=13%  Similarity=0.131  Sum_probs=96.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcccee---EeEEEEEEECCEEEEEEEEeCCCchhhhchh-----Hhhhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGV---EFQTQKMDINGKEVKAQIWDTAGQERFRAVT-----SAYYR   85 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~-----~~~~~   85 (223)
                      .++|+|+|.+|+|||||+|+|++.........+.+.   +.....+.. .....+.+||+||........     ...+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            378999999999999999999986554322222221   111111111 112367899999965322222     22256


Q ss_pred             CCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-----------cCHHHHHHH----HHHc
Q 027417           86 GAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDARE-----------VTTAEGKAL----AEAQ  149 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~----~~~~  149 (223)
                      .+|+++++.+.    .+... ..|++.+...   +.|+++|+||+|+.....           ...++.+..    ....
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            78988887542    23333 3455555543   579999999999843211           011111111    1221


Q ss_pred             C---CeEEEEccC--CCCCHHHHHHHHHHHHHHHHhh
Q 027417          150 G---LFFMETSAL--DSSNVTAAFQTVVTEIYNILSR  181 (223)
Q Consensus       150 ~---~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~~~  181 (223)
                      +   .++|.+|+.  .+.++..+.+.|+..+.++..-
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence            2   348999998  6799999999999888765543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=9.1e-16  Score=127.61  Aligned_cols=153  Identities=20%  Similarity=0.221  Sum_probs=110.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-EEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      +.+=|.++|+...|||||+..+..........-.++.+..-..+..+. ....++|+|||||+.|..++..-..-+|++|
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            456789999999999999999998776544333333333333443331 2346889999999999999999999999999


Q ss_pred             EEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-------HHHcC--CeEEEEccC
Q 027417           92 LVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL-------AEAQG--LFFMETSAL  159 (223)
Q Consensus        92 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~  159 (223)
                      +|+++++   |++.+.       +......+.|+|+++||+|+.+.+.   .....-       .+.++  ..++++||+
T Consensus        84 LVVa~dDGv~pQTiEA-------I~hak~a~vP~iVAiNKiDk~~~np---~~v~~el~~~gl~~E~~gg~v~~VpvSA~  153 (509)
T COG0532          84 LVVAADDGVMPQTIEA-------INHAKAAGVPIVVAINKIDKPEANP---DKVKQELQEYGLVPEEWGGDVIFVPVSAK  153 (509)
T ss_pred             EEEEccCCcchhHHHH-------HHHHHHCCCCEEEEEecccCCCCCH---HHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence            9999998   555444       2223334899999999999985422   222211       22232  358999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027417          160 DSSNVTAAFQTVVTEI  175 (223)
Q Consensus       160 ~~~~i~~~~~~l~~~~  175 (223)
                      +|+|+.++++.++-..
T Consensus       154 tg~Gi~eLL~~ill~a  169 (509)
T COG0532         154 TGEGIDELLELILLLA  169 (509)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999987433

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.71  E-value=6e-16  Score=121.17  Aligned_cols=155  Identities=21%  Similarity=0.159  Sum_probs=113.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYY   84 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~   84 (223)
                      .-..+|+++|.|++|||||++.|++........++++.+..+..+.+++  ..+++.|+||.-.       .........
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence            3457899999999999999999999887776677767777777776666  7788999998322       123455677


Q ss_pred             cCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCC---------------------------------------------
Q 027417           85 RGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDM---------------------------------------------  118 (223)
Q Consensus        85 ~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~---------------------------------------------  118 (223)
                      ++||++|+|+|+..... .+-+...+....-+.+.                                             
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            99999999999997554 44444433332211111                                             


Q ss_pred             --------------------CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          119 --------------------NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       119 --------------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                                          -+|.++|.||.|+..     .++...+.+..  ..+.+||+.+.|++++.+.|-..+
T Consensus       219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                                267899999999874     34444444444  689999999999999999987655

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.70  E-value=1.7e-16  Score=133.79  Aligned_cols=152  Identities=18%  Similarity=0.198  Sum_probs=103.7

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCC--CC------------------------CC---CccceeEeEEEEEEECCE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEF--YP------------------------NS---KSTIGVEFQTQKMDINGK   61 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~--~~------------------------~~---~~~~~~~~~~~~~~~~~~   61 (223)
                      ..+.++|+++|+.++|||||+.+|+...-  ..                        ..   ...-|.+.......+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            45679999999999999999998874211  00                        00   011134444445556666


Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHH-------HHHHHHHHHhhcCCCCC-cEEEEEeCCCCCC
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFD-------SIGRWLNELHTHSDMNV-VTILVGNKSDLKD  133 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-p~ivv~nK~Dl~~  133 (223)
                      ...++++|+||++.|.......+..+|++|+|+|+++. .|+       ..+..+..+..   .++ ++|+++||+|+.+
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATT  159 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCc
Confidence            77889999999999999999999999999999999873 232       22222222221   245 4688899999762


Q ss_pred             Cc--c----cCHHHHHHHHHHcC-----CeEEEEccCCCCCHHH
Q 027417          134 AR--E----VTTAEGKALAEAQG-----LFFMETSALDSSNVTA  166 (223)
Q Consensus       134 ~~--~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  166 (223)
                      ..  +    -..++++.++...+     ++|+++||.+|+|+.+
T Consensus       160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            10  1    11345666667665     6799999999999864

>cd04169 RF3 RF3 subfamily

Probab=99.69  E-value=1.3e-15  Score=120.38  Aligned_cols=116  Identities=16%  Similarity=0.162  Sum_probs=80.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------C---ccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNS-----------------K---STIGVEFQTQKMDINGKEVKAQIWDTAGQE   74 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~-----------------~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   74 (223)
                      .+|+|+|++|+|||||+++|+...-....                 .   ...+.+.......+....+.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            68999999999999999999852111000                 0   001223334444555566889999999998


Q ss_pred             hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417           75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA  134 (223)
Q Consensus        75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  134 (223)
                      .+.......++.+|++|+|+|.++.... ....++.....   .++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence            8877777788999999999999875332 22333333322   36899999999998754

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.69  E-value=5.4e-16  Score=119.13  Aligned_cols=114  Identities=21%  Similarity=0.216  Sum_probs=78.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------------ccceeEeE--EEEEEEC--------CEEEEEEEEeC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK--------------STIGVEFQ--TQKMDIN--------GKEVKAQIWDT   70 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~--------------~~~~~~~~--~~~~~~~--------~~~~~~~l~D~   70 (223)
                      .+|+|+|+.++|||||+++|+...-.....              ..-|.+..  .....+.        +..+.+.+|||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            379999999999999999997532110000              00011111  1122222        34788999999


Q ss_pred             CCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           71 AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        71 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                      ||+..|.......++.+|++|+|+|+.+..+.+....|.. ..   ..++|+++++||+|+.
T Consensus        81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~---~~~~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-AL---KERVKPVLVINKIDRL  138 (222)
T ss_pred             CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HH---HcCCCEEEEEECCCcc
Confidence            9999999999999999999999999998765554333222 22   2257999999999976

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01850 CDC_Septin CDC/Septin

Probab=99.69  E-value=1.1e-15  Score=121.36  Aligned_cols=143  Identities=15%  Similarity=0.239  Sum_probs=93.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc---h
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPN----------SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA---V   79 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~   79 (223)
                      -.++|+|+|.+|+|||||+++|++..+...          ..++.+.......+..++..+.+.+|||||......   .
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999998876543          234444455555566677788999999999432211   0


Q ss_pred             -----------------------hHhhhc--CCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           80 -----------------------TSAYYR--GAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        80 -----------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                                             +...+.  .+|+++++++.+... +... ...++.+.   . .+|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~---~-~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS---K-RVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---c-cCCEEEEEECCCcCC
Confidence                                   001122  477888888876521 1111 22233332   2 589999999999865


Q ss_pred             Cc--ccCHHHHHHHHHHcCCeEEEEccCC
Q 027417          134 AR--EVTTAEGKALAEAQGLFFMETSALD  160 (223)
Q Consensus       134 ~~--~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (223)
                      ..  ......+++.+..+++++|......
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            32  2345556777888899988776543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.69  E-value=1.9e-15  Score=126.03  Aligned_cols=153  Identities=18%  Similarity=0.138  Sum_probs=100.6

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC------C--------CCccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYP------N--------SKSTIGVEFQTQKMDINGKEVKAQIWDTAG   72 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   72 (223)
                      ........++|+++|++++|||||+++|++.....      .        .....|.+.......+......+.++||||
T Consensus         5 ~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG   84 (396)
T PRK00049          5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPG   84 (396)
T ss_pred             hccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCC
Confidence            34455778999999999999999999998731100      0        001224555555555554556788999999


Q ss_pred             chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHHH
Q 027417           73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKDAREV---TTAEGKALAEA  148 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~  148 (223)
                      +..+.......+..+|++++|+|+..+..-.. ..++..+...   +.|.+ +++||+|+.+..+.   ...+...+...
T Consensus        85 ~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~  160 (396)
T PRK00049         85 HADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK  160 (396)
T ss_pred             HHHHHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHh
Confidence            98887777777899999999999987432222 2223333322   57875 57999998742221   12234444444


Q ss_pred             c-----CCeEEEEccCCCCC
Q 027417          149 Q-----GLFFMETSALDSSN  163 (223)
Q Consensus       149 ~-----~~~~~~~Sa~~~~~  163 (223)
                      .     +++++++||.++.+
T Consensus       161 ~~~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        161 YDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             cCCCccCCcEEEeecccccC
Confidence            3     36799999998753

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.69  E-value=6e-16  Score=131.45  Aligned_cols=156  Identities=21%  Similarity=0.164  Sum_probs=99.4

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------C------------------ccceeEeEEEEEEE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-------------K------------------STIGVEFQTQKMDI   58 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~-------------~------------------~~~~~~~~~~~~~~   58 (223)
                      .....++|+++|++++|||||+.+|+...-....             .                  ..-|.+.......+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            3466799999999999999999999754221110             0                  00122333334444


Q ss_pred             CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027417           59 NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT  138 (223)
Q Consensus        59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~  138 (223)
                      ......+.||||||++.+.......+..+|++++|+|+...-.-...+.+. .+... . ..|+|+++||+|+.+.++..
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l-g-~~~iIvvvNKiD~~~~~~~~  179 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL-G-IKHLVVAVNKMDLVDYSEEV  179 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh-C-CCceEEEEEeeccccchhHH
Confidence            445567889999999888766666679999999999998643211111111 11111 1 24788999999987432211


Q ss_pred             HHH----HHHHHHHc----CCeEEEEccCCCCCHHHHH
Q 027417          139 TAE----GKALAEAQ----GLFFMETSALDSSNVTAAF  168 (223)
Q Consensus       139 ~~~----~~~~~~~~----~~~~~~~Sa~~~~~i~~~~  168 (223)
                      .++    ...+....    ..+++++||++|.|+.+.-
T Consensus       180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence            222    22233333    3679999999999998654

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.68  E-value=8.5e-16  Score=128.49  Aligned_cols=150  Identities=23%  Similarity=0.191  Sum_probs=95.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------C------------------ccceeEeEEEEEEECCEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNS-------------K------------------STIGVEFQTQKMDINGKEV   63 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~-------------~------------------~~~~~~~~~~~~~~~~~~~   63 (223)
                      ++|+++|+.++|||||+.+|+...-....             .                  ..-|.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999743211000             0                  0112233333444444456


Q ss_pred             EEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH----
Q 027417           64 KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT----  139 (223)
Q Consensus        64 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~----  139 (223)
                      .+.||||||++.|.......+..+|++|+|+|+.....-+..+.|. .+... . ..++|+++||+|+.+...-..    
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~-~-~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL-G-IRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc-C-CCcEEEEEEecccccchHHHHHHHH
Confidence            7889999999998777777889999999999998653222222221 12221 1 246888999999875322111    


Q ss_pred             HHHHHHHHHcC---CeEEEEccCCCCCHHHH
Q 027417          140 AEGKALAEAQG---LFFMETSALDSSNVTAA  167 (223)
Q Consensus       140 ~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~  167 (223)
                      ++...+....+   ++++++||.+|.|+.+.
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence            22233334443   46999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN03126 Elongation factor Tu; Provisional

Probab=99.67  E-value=1.6e-15  Score=128.53  Aligned_cols=151  Identities=17%  Similarity=0.125  Sum_probs=100.7

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCC------CC--------CCCccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEF------YP--------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER   75 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   75 (223)
                      .....++|+++|++++|||||+++|++...      ..        ......|.+.......+......+.++|+||++.
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            356789999999999999999999985211      00        0011224444444444544456788999999999


Q ss_pred             hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHc--
Q 027417           76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV---TTAEGKALAEAQ--  149 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~--  149 (223)
                      |.......+..+|++++|+|+.+...-.. ..++..+...   ++| +|+++||+|+.+..+.   ..++...+....  
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            98888888889999999999987533222 2233333322   567 7788999998753221   122444455443  


Q ss_pred             ---CCeEEEEccCCCCCH
Q 027417          150 ---GLFFMETSALDSSNV  164 (223)
Q Consensus       150 ---~~~~~~~Sa~~~~~i  164 (223)
                         +++++++|+.++.++
T Consensus       233 ~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        233 PGDDIPIISGSALLALEA  250 (478)
T ss_pred             CcCcceEEEEEccccccc
Confidence               567999999988543

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.67  E-value=2.2e-15  Score=127.11  Aligned_cols=152  Identities=18%  Similarity=0.126  Sum_probs=100.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCC------------------------CCC---ccceeEeEEEEEEECCE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARD--EFYP------------------------NSK---STIGVEFQTQKMDINGK   61 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~--~~~~------------------------~~~---~~~~~~~~~~~~~~~~~   61 (223)
                      ....++|+++|+.++|||||+.+|+..  ....                        ...   ...|.+.......+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            456799999999999999999998752  1110                        000   11134444455555666


Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh---hH----HHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCC
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ---TF----DSIGRWLNELHTHSDMNVV-TILVGNKSDLKD  133 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~  133 (223)
                      ...++|+|+||+..|.......+..+|++|+|+|+....   .+    ...+.| ..+...   ++| +|+++||+|...
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~~---gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFTL---GVKQMIVCINKMDDKT  159 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHHc---CCCeEEEEEEcccccc
Confidence            778999999999999888888889999999999998742   11    111222 222222   555 678999999532


Q ss_pred             --CcccC----HHHHHHHHHHc-----CCeEEEEccCCCCCHHH
Q 027417          134 --AREVT----TAEGKALAEAQ-----GLFFMETSALDSSNVTA  166 (223)
Q Consensus       134 --~~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  166 (223)
                        ..+-.    .++...+....     +++++++|+.+|.|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              11111    23333444433     35799999999999864

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=1.1e-15  Score=126.73  Aligned_cols=161  Identities=20%  Similarity=0.215  Sum_probs=118.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------------ccceeEeEE--EE-EEECCEEEEEEEEeCCCch
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-------------STIGVEFQT--QK-MDINGKEVKAQIWDTAGQE   74 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-------------~~~~~~~~~--~~-~~~~~~~~~~~l~D~~G~~   74 (223)
                      .++..|+.|+-+...|||||.++|+...-.....             .--|++...  .. ++.++..+.++++|||||.
T Consensus        57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv  136 (650)
T KOG0462|consen   57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV  136 (650)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence            3677899999999999999999997532111100             011222222  22 2234677899999999999


Q ss_pred             hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHcCCeE
Q 027417           75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAEAQGLFF  153 (223)
Q Consensus        75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~  153 (223)
                      .|..-....+..++++|+|+|++..-.-+.+..++..+..    +..+|.|+||+|+..++. .-..+..++......++
T Consensus       137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~  212 (650)
T KOG0462|consen  137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV  212 (650)
T ss_pred             cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence            9999888889999999999999987666666665555543    677999999999987642 22334445545555679


Q ss_pred             EEEccCCCCCHHHHHHHHHHHH
Q 027417          154 METSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       154 ~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      +.+||++|.|+.+++++|++++
T Consensus       213 i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  213 IYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             EEEEeccCccHHHHHHHHHhhC
Confidence            9999999999999999999877

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.66  E-value=1.2e-15  Score=120.64  Aligned_cols=140  Identities=18%  Similarity=0.109  Sum_probs=87.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--CCC---C--------CC---ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE--FYP---N--------SK---STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV   79 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~--~~~---~--------~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   79 (223)
                      +|+|+|++++|||||+++|+...  ...   .        +.   ...+.+.......+......+.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            58999999999999999997421  100   0        00   11133333333334334577889999999888888


Q ss_pred             hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHcCCe-EEEEc
Q 027417           80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAEAQGLF-FMETS  157 (223)
Q Consensus        80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~~S  157 (223)
                      +...++.+|++|+|+|..+...-.. ...+..+..   .++|+++++||+|+.+.+. ...++.+.......++ .+++|
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pis  156 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIG  156 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccc
Confidence            8889999999999999987532222 222233322   2689999999999875321 1123333332222223 56666


Q ss_pred             cC
Q 027417          158 AL  159 (223)
Q Consensus       158 a~  159 (223)
                      +.
T Consensus       157 a~  158 (270)
T cd01886         157 EE  158 (270)
T ss_pred             cC
Confidence            65

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.66  E-value=6.3e-16  Score=122.73  Aligned_cols=144  Identities=22%  Similarity=0.196  Sum_probs=89.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCC------cc----------ceeEeEEEEEEECCEEEEEEEEeCCCchhhhch
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSK------ST----------IGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV   79 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   79 (223)
                      +|+|+|++|+|||||+++|++........      .+          .+.+.......+....+.+.+|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999997532111000      00          011111122222224467889999999888778


Q ss_pred             hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEE--Ec
Q 027417           80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFME--TS  157 (223)
Q Consensus        80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S  157 (223)
                      +...+..+|++++|+|.++.........|. .+.   ..++|+++++||+|+....  ..+....+....+.+++.  +.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip  154 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLWE-FAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP  154 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence            888899999999999999865544333332 222   2368999999999987542  122333444455655433  33


Q ss_pred             cCCCCCHH
Q 027417          158 ALDSSNVT  165 (223)
Q Consensus       158 a~~~~~i~  165 (223)
                      ..++.++.
T Consensus       155 ~~~~~~~~  162 (268)
T cd04170         155 IGEGDDFK  162 (268)
T ss_pred             ccCCCcee
Confidence            44544443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PLN03127 Elongation factor Tu; Provisional

Probab=99.66  E-value=6.2e-15  Score=124.25  Aligned_cols=159  Identities=17%  Similarity=0.150  Sum_probs=99.2

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcC------CCCCC--------CCccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARD------EFYPN--------SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER   75 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   75 (223)
                      .....++|+++|++++|||||+++|.+.      .....        ....-|.+.......+......+.++||||+..
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence            3566799999999999999999999732      10000        001124455555555655566788999999988


Q ss_pred             hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHc--
Q 027417           76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREVT---TAEGKALAEAQ--  149 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~--  149 (223)
                      |.......+..+|++++|+|..+...-+. ...+..+..   .++| +|+++||+|+.+..+..   .++..++....  
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            87777677778999999999986432221 222222222   2577 57889999987532211   11233333332  


Q ss_pred             ---CCeEEEEccC---CCCC-------HHHHHHHHH
Q 027417          150 ---GLFFMETSAL---DSSN-------VTAAFQTVV  172 (223)
Q Consensus       150 ---~~~~~~~Sa~---~~~~-------i~~~~~~l~  172 (223)
                         .++++++|+.   ++.|       +.++++.|.
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~  248 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVD  248 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHH
Confidence               3678888875   4544       445555544

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.65  E-value=3.1e-15  Score=118.10  Aligned_cols=165  Identities=22%  Similarity=0.105  Sum_probs=113.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYRG   86 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~   86 (223)
                      .--|.++|-|++|||||++++...+......|+++.......+.+ ...-.+.+-|+||.-+       ........+..
T Consensus       159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            345789999999999999999987776666666566555555555 3334577999999322       11222334467


Q ss_pred             CCEEEEEEECCCHhh---HHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeE-EEEccCC
Q 027417           87 AVGALLVYDISRRQT---FDSIGRWLNELHTHS--DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFF-METSALD  160 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~  160 (223)
                      +.++++|+|++..+.   .+.......++..+.  -.++|.+||+||+|+....+........+.+..+... +.+|+.+
T Consensus       238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t  317 (369)
T COG0536         238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT  317 (369)
T ss_pred             hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence            999999999986442   444444444444332  2368999999999976544444444555555555542 2299999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~~~~~  179 (223)
                      ++|++++...+.+.+.+..
T Consensus       318 ~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         318 REGLDELLRALAELLEETK  336 (369)
T ss_pred             ccCHHHHHHHHHHHHHHhh
Confidence            9999999999987776654

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=1.1e-14  Score=120.83  Aligned_cols=150  Identities=19%  Similarity=0.200  Sum_probs=110.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEE--EEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQ--KMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      .++++-|-|+|+..-|||||+++|..........  .|++....  .+.++ .+-.++|.|||||..|..++..-..-+|
T Consensus       150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~--GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtD  226 (683)
T KOG1145|consen  150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEA--GGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTD  226 (683)
T ss_pred             CCCCCeEEEeecccCChhhHHHHHhhCceehhhc--CCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCcccc
Confidence            3566788899999999999999998766543322  24433333  33334 3467889999999999999999999999


Q ss_pred             EEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-------HcC--CeEEEE
Q 027417           89 GALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE-------AQG--LFFMET  156 (223)
Q Consensus        89 ~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-------~~~--~~~~~~  156 (223)
                      ++++|+.+++   +++.+.       |......+.|+|+++||+|.++.+   .+.+..-..       .+|  ++++++
T Consensus       227 IvVLVVAadDGVmpQT~Ea-------IkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipi  296 (683)
T KOG1145|consen  227 IVVLVVAADDGVMPQTLEA-------IKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPI  296 (683)
T ss_pred             EEEEEEEccCCccHhHHHH-------HHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEe
Confidence            9999999998   455443       333344589999999999987643   333333222       333  458999


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 027417          157 SALDSSNVTAAFQTVVT  173 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~  173 (223)
                      ||++|.|++.+-+++.-
T Consensus       297 SAl~g~nl~~L~eaill  313 (683)
T KOG1145|consen  297 SALTGENLDLLEEAILL  313 (683)
T ss_pred             ecccCCChHHHHHHHHH
Confidence            99999999999998863

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.64  E-value=6.3e-15  Score=126.33  Aligned_cols=118  Identities=17%  Similarity=0.180  Sum_probs=81.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhc--CCCCCC-------------C--C---ccceeEeEEEEEEECCEEEEEEEEeCC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFAR--DEFYPN-------------S--K---STIGVEFQTQKMDINGKEVKAQIWDTA   71 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~--~~~~~~-------------~--~---~~~~~~~~~~~~~~~~~~~~~~l~D~~   71 (223)
                      ....+|+|+|++++|||||+++|+.  +.....             .  .   ...|.++......+....+.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            4578999999999999999999974  111000             0  0   011233333334444455788999999


Q ss_pred             CchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        72 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      |+..+.......++.+|++|+|+|+++...- ....++.....   .++|+++++||+|+..
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence            9998888777788999999999999875322 22333333322   3689999999999753

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.64  E-value=2.9e-15  Score=115.16  Aligned_cols=160  Identities=18%  Similarity=0.244  Sum_probs=98.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE-CCEEEEEEEEeCCCchhhh-----chhHhhhcCCCE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFR-----AVTSAYYRGAVG   89 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----~~~~~~~~~~d~   89 (223)
                      ||+++|+.+|||||..+.+.+...+ ......+.+.......+ ....+.+.+||+||+..+.     ......++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---G-GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            7999999999999998888865433 22222333333333333 1234578999999986543     346778999999


Q ss_pred             EEEEEECCCHhhH---HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--c----CHHHHHHHHHHcC---CeEEEEc
Q 027417           90 ALLVYDISRRQTF---DSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--V----TTAEGKALAEAQG---LFFMETS  157 (223)
Q Consensus        90 ~i~v~d~~~~~s~---~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~----~~~~~~~~~~~~~---~~~~~~S  157 (223)
                      +|+|+|+.+.+-.   ..+...+..+..+.+ +..+.+.++|+|+..+..  .    ..+...+.+...+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            9999999954433   334445555555544 788999999999874311  1    1222333444545   6789999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q 027417          158 ALDSSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       158 a~~~~~i~~~~~~l~~~~~~~  178 (223)
                      ..+ +.+-+.+..+++.+..+
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~  178 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPN  178 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTT
T ss_pred             CcC-cHHHHHHHHHHHHHccc
Confidence            888 58888888888776543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.64  E-value=9.1e-15  Score=117.88  Aligned_cols=81  Identities=20%  Similarity=0.217  Sum_probs=54.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEE---------------------ECC-EEEEEEEEeCCCc-
Q 027417           17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMD---------------------ING-KEVKAQIWDTAGQ-   73 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~l~D~~G~-   73 (223)
                      |+|+|.|+||||||+++|++........|..+.+.......                     .++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998765432223322222222111                     122 3477999999996 


Q ss_pred             ---hhhhchhHh---hhcCCCEEEEEEECC
Q 027417           74 ---ERFRAVTSA---YYRGAVGALLVYDIS   97 (223)
Q Consensus        74 ---~~~~~~~~~---~~~~~d~~i~v~d~~   97 (223)
                         +.+..+...   .++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               333333333   589999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.64  E-value=4.8e-15  Score=130.51  Aligned_cols=154  Identities=21%  Similarity=0.185  Sum_probs=97.3

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------C-------------------ccceeEeEEEEEEE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS------------K-------------------STIGVEFQTQKMDI   58 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~   58 (223)
                      +....++|+|+|++++|||||+++|+...-....            .                   ...|.+.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            3455689999999999999999999864321110            0                   00122233333334


Q ss_pred             CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027417           59 NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT  138 (223)
Q Consensus        59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~  138 (223)
                      ......+.|+||||++.+.......+..+|++++|+|+.....-+..+. +..+....  ..++|+++||+|+.+..+..
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~~--~~~iivvvNK~D~~~~~~~~  176 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASLLG--IRHVVLAVNKMDLVDYDQEV  176 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHHhC--CCeEEEEEEecccccchhHH
Confidence            4445577899999998887666667889999999999976432211111 11222221  25788999999987422111


Q ss_pred             H----HHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 027417          139 T----AEGKALAEAQG---LFFMETSALDSSNVTA  166 (223)
Q Consensus       139 ~----~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  166 (223)
                      .    .+...+....+   ++++++||++|.|+.+
T Consensus       177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            1    22333344444   4599999999999985

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.64  E-value=1.2e-14  Score=110.15  Aligned_cols=158  Identities=20%  Similarity=0.199  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEe--EEEEEEECCEEEEEEEEeCCCchhhhc--------h---hH
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEF--QTQKMDINGKEVKAQIWDTAGQERFRA--------V---TS   81 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~---~~   81 (223)
                      ++|+|+|.+|||||||+|+|++...........+.+.  ........+  ..+.++||||......        +   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            4799999999999999999998765433321112222  222233333  5678999999543211        1   11


Q ss_pred             hhhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc------CHHHHHHHHHHcCCeEE
Q 027417           82 AYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV------TTAEGKALAEAQGLFFM  154 (223)
Q Consensus        82 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~  154 (223)
                      .....+|++|+|+++.+.. ....+-.++..+... ..-.+++++.|+.|......+      .....+.+.+.++-.++
T Consensus        79 ~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~-~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~  157 (196)
T cd01852          79 LSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE-KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV  157 (196)
T ss_pred             hcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh-HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence            2236789999999998721 122222333332211 112578899999997653221      12344556666666665


Q ss_pred             EEcc-----CCCCCHHHHHHHHHHHH
Q 027417          155 ETSA-----LDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       155 ~~Sa-----~~~~~i~~~~~~l~~~~  175 (223)
                      ..+.     ..+.++.++++.|...+
T Consensus       158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~  183 (196)
T cd01852         158 AFNNKAKGEEQEQQVKELLAKVESMV  183 (196)
T ss_pred             EEeCCCCcchhHHHHHHHHHHHHHHH
Confidence            5543     45566777777766554

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK13351 elongation factor G; Reviewed

Probab=99.63  E-value=5.2e-15  Score=131.55  Aligned_cols=118  Identities=15%  Similarity=0.179  Sum_probs=83.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-------------CCCCc---cceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-------------PNSKS---TIGVEFQTQKMDINGKEVKAQIWDTAGQER   75 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   75 (223)
                      +...+|+|+|+.|+|||||+++|+...-.             ..+.+   ..+.+.......+....+.+++|||||+..
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            45689999999999999999999853210             00000   011222222222333457889999999999


Q ss_pred             hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      +...+..+++.+|++|+|+|.++..+......|. .+..   .++|+++++||+|+..
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh---cCCCEEEEEECCCCCC
Confidence            9888899999999999999999876666555453 2322   2689999999999864

>TIGR00503 prfC peptide chain release factor 3

Probab=99.63  E-value=1.8e-14  Score=123.62  Aligned_cols=119  Identities=17%  Similarity=0.204  Sum_probs=82.4

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhc--CCCCC------C-------C-----CccceeEeEEEEEEECCEEEEEEEEe
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFAR--DEFYP------N-------S-----KSTIGVEFQTQKMDINGKEVKAQIWD   69 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~--~~~~~------~-------~-----~~~~~~~~~~~~~~~~~~~~~~~l~D   69 (223)
                      ......+|+|+|++++|||||+++|+.  +....      .       .     ....|.++......++...+.+.+||
T Consensus         7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD   86 (527)
T TIGR00503         7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD   86 (527)
T ss_pred             hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence            345678999999999999999999863  21110      0       0     01113444444455555678899999


Q ss_pred             CCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           70 TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        70 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                      |||+..+.......++.+|++|+|+|..+.-. .....++.....   .+.|+++++||+|+.
T Consensus        87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            99998887767777899999999999987421 122334443332   368999999999974

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=1.8e-15  Score=124.19  Aligned_cols=169  Identities=21%  Similarity=0.173  Sum_probs=111.3

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-hhch--------hH
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-FRAV--------TS   81 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~--------~~   81 (223)
                      .+..++|+|+|+|+||||||+|+|.........+.. |++.+.....++-+++.+.|.||+|... ....        ..
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence            355699999999999999999999988776544444 7777777766666678889999999655 2111        12


Q ss_pred             hhhcCCCEEEEEEECCC--HhhHHHHHHHHHHHhhc------CCCCCcEEEEEeCCCCCCC-cccCHHHHHHHHHH-c-C
Q 027417           82 AYYRGAVGALLVYDISR--RQTFDSIGRWLNELHTH------SDMNVVTILVGNKSDLKDA-REVTTAEGKALAEA-Q-G  150 (223)
Q Consensus        82 ~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~------~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~-~-~  150 (223)
                      ..+..+|++++|+|+..  -++-..+...+.....-      ...+.|++++.||.|+... .++...-....... . .
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~  423 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSV  423 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcc
Confidence            24578999999999943  33322223333333211      1235889999999998764 22222111111111 1 1


Q ss_pred             Ce-EEEEccCCCCCHHHHHHHHHHHHHHHHh
Q 027417          151 LF-FMETSALDSSNVTAAFQTVVTEIYNILS  180 (223)
Q Consensus       151 ~~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  180 (223)
                      .+ ..++|+++++|++.+.+.|...+.....
T Consensus       424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  424 FPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             cceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            22 5669999999999999999876644433

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.62  E-value=2.6e-14  Score=99.17  Aligned_cols=106  Identities=24%  Similarity=0.195  Sum_probs=68.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh---------hchhHhhhc
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF---------RAVTSAYYR   85 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~~   85 (223)
                      +|+|+|.+|+|||||+++|++.... ....+..+.......+.+++..+  .++||||....         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999985432 22222222333334455566544  59999995321         111223348


Q ss_pred             CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 027417           86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK  128 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK  128 (223)
                      .+|++++|+|.+++.. +.....++.+.    .++|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            9999999999888422 22333444442    47999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.61  E-value=1.2e-14  Score=122.36  Aligned_cols=161  Identities=16%  Similarity=0.109  Sum_probs=102.3

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC---C--cc--ceeEeEE-----------EEEEECC------------
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS---K--ST--IGVEFQT-----------QKMDING------------   60 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~---~--~~--~~~~~~~-----------~~~~~~~------------   60 (223)
                      .+..++|.++|+...|||||+.+|++.......   .  -|  .|+....           .....+.            
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            466799999999999999999999974321111   0  01  1111100           0000000            


Q ss_pred             ----EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           61 ----KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        61 ----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                          ....+.|+|+||++.|.......+..+|++++|+|+.++. .-+..+. +..+... . -.++|+++||+|+.+..
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~eh-l~i~~~l-g-i~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEH-LAAVEIM-K-LKHIIILQNKIDLVKEA  187 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHH-HHHHHHc-C-CCcEEEEEecccccCHH
Confidence                0236789999999999888888888999999999998742 1122222 2222211 1 24688999999987532


Q ss_pred             cc--CHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417          136 EV--TTAEGKALAEA---QGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       136 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      ..  ..++..++...   .+.+++++||++|.|++++++.|...
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~  231 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQ  231 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence            21  12333333322   35789999999999999999888753

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=1e-14  Score=117.86  Aligned_cols=190  Identities=21%  Similarity=0.155  Sum_probs=125.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------C------------CCccceeEeEEEEEEECCE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDE--FYP---------------N------------SKSTIGVEFQTQKMDINGK   61 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~--~~~---------------~------------~~~~~~~~~~~~~~~~~~~   61 (223)
                      ....++++++|+..+|||||+-+|+...  ++.               .            ...--|.+.......+.-.
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            3567999999999999999999987631  100               0            0011255666667777777


Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh---hH--HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ---TF--DSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      .+.++++|+||+..|-.........+|+.|+|+|+++.+   +|  +...+....+.+... -..+|+++||+|..+.++
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde  162 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCH
Confidence            788999999999999888888889999999999999863   12  111122222222222 355788899999987544


Q ss_pred             cCHHHHH----HHHHHcC-----CeEEEEccCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecC
Q 027417          137 VTTAEGK----ALAEAQG-----LFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEG  206 (223)
Q Consensus       137 ~~~~~~~----~~~~~~~-----~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (223)
                      -.+++..    .+.+..+     ++|+++|+..|.|+.+.-     ....++.-+-..+....-.....+.++|+++-.
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s-----~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI  236 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS-----ENMPWYKGPTLLEALDQLEPPERPLDKPLRLPI  236 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC-----cCCcCccCChHHHHHhccCCCCCCCCCCeEeEe
Confidence            4444432    2333333     569999999999987655     244555555555555544555555666666543

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.60  E-value=7.7e-15  Score=112.83  Aligned_cols=163  Identities=17%  Similarity=0.178  Sum_probs=106.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhh
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAY   83 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~   83 (223)
                      ....++|+++|..|+|||||||+|++++..+...-..+.+.....+..- ..-.+.|||+||...       +......+
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHHHHHHH
Confidence            3567999999999999999999999876654433222333222222111 224678999999544       66677788


Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC--------cccCHH-------HHHHHHHH
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA--------REVTTA-------EGKALAEA  148 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--------~~~~~~-------~~~~~~~~  148 (223)
                      +...|.++++++..++.---....| +.+....- +.++++++|.+|..+.        ...+.+       .+....+.
T Consensus       115 l~~~DLvL~l~~~~draL~~d~~f~-~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTDEDFL-RDVIILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhhccEEEEeccCCCccccCCHHHH-HHHHHhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999997532222233 33322221 4899999999997643        111111       11111111


Q ss_pred             c--CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417          149 Q--GLFFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       149 ~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      .  --|++.++...++|++.+...++..+.
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence            1  235788889999999999999987664

>PRK12739 elongation factor G; Reviewed

Probab=99.58  E-value=6.6e-14  Score=124.37  Aligned_cols=119  Identities=18%  Similarity=0.109  Sum_probs=79.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCC-----------ccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP-----NSK-----------STIGVEFQTQKMDINGKEVKAQIWDTAGQE   74 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   74 (223)
                      .+...+|+|+|++++|||||+++|+...-..     ...           ...|.+.......+......+.++||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            3457899999999999999999997521100     000           011233333223332344678899999998


Q ss_pred             hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      .+...+...++.+|++|+|+|+.+...-.... .+..+..   .+.|+++++||+|+..
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence            88888888899999999999998754333222 2222222   2589999999999864

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.58  E-value=9.3e-14  Score=108.94  Aligned_cols=163  Identities=18%  Similarity=0.328  Sum_probs=118.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE--CCEEEEEEEEeCCCchhhhchhHhhhcC----
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI--NGKEVKAQIWDTAGQERFRAVTSAYYRG----   86 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~----   86 (223)
                      ..-+|+|+|+.|+||||||.+|-+.+   .+.+..|..+-+..+.-  .+...++.+|-.-|.-....+....+..    
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            34689999999999999999998854   33333455554444433  2344567799888866666666655543    


Q ss_pred             CCEEEEEEECCCHhh-HHHHHHHHHHHhhcCC------------------------------------------------
Q 027417           87 AVGALLVYDISRRQT-FDSIGRWLNELHTHSD------------------------------------------------  117 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------  117 (223)
                      -.++|++.|+++|++ ++++..|...+.++.+                                                
T Consensus       128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~  207 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH  207 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence            246899999999965 7788888877654211                                                


Q ss_pred             -------------CCCcEEEEEeCCCCC----CCcccC-------HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417          118 -------------MNVVTILVGNKSDLK----DAREVT-------TAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus       118 -------------~~~p~ivv~nK~Dl~----~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                                   .++|++||.||+|..    .+.+..       ....+.||.++|+.++.+|+++..|++.+...|.+
T Consensus       208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence                         168899999999973    222222       23467889999999999999999999999999999


Q ss_pred             HHHHH
Q 027417          174 EIYNI  178 (223)
Q Consensus       174 ~~~~~  178 (223)
                      ++|..
T Consensus       288 r~yG~  292 (473)
T KOG3905|consen  288 RSYGF  292 (473)
T ss_pred             HhcCc
Confidence            88653

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.57  E-value=7.3e-14  Score=114.43  Aligned_cols=160  Identities=22%  Similarity=0.226  Sum_probs=116.8

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCCCccceeEeEEE--EEEE-CCEEEEEEEEeCC
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEF---------------YPNSKSTIGVEFQTQ--KMDI-NGKEVKAQIWDTA   71 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~---------------~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~D~~   71 (223)
                      +.....|..|+-+-..|||||.++|+...-               +.+....++..-...  .+.. +++.+.++|+|||
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP   84 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP   84 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence            345567889999999999999999975311               111111111211222  2222 5588999999999


Q ss_pred             CchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 027417           72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL  151 (223)
Q Consensus        72 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  151 (223)
                      ||-.|.--....+..|.+.++++|++..-.-+.+.+.|..+..    +.-+|-|.||+|++.++.  ..-.+++-.-.|+
T Consensus        85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp--ervk~eIe~~iGi  158 (603)
T COG0481          85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP--ERVKQEIEDIIGI  158 (603)
T ss_pred             CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH--HHHHHHHHHHhCC
Confidence            9998877777778899999999999998777777777777654    566899999999986532  2223344445666


Q ss_pred             e---EEEEccCCCCCHHHHHHHHHHHH
Q 027417          152 F---FMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       152 ~---~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      +   .+.+||++|.||++++++|++++
T Consensus       159 d~~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         159 DASDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             CcchheeEecccCCCHHHHHHHHHhhC
Confidence            5   78999999999999999999876

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.57  E-value=3.9e-14  Score=125.87  Aligned_cols=120  Identities=19%  Similarity=0.142  Sum_probs=82.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCC-----------ccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP-----NSK-----------STIGVEFQTQKMDINGKEVKAQIWDTAGQE   74 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   74 (223)
                      .+...+|+|+|++++|||||+++|+...-..     ...           ...|++.......+......+.+|||||+.
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~   86 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV   86 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence            4457899999999999999999997421110     000           011333333333333345788999999998


Q ss_pred             hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417           75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA  134 (223)
Q Consensus        75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  134 (223)
                      .+.......++.+|++|+|+|+.+....+...-| ..+..   .++|+++++||+|+...
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCCC
Confidence            8877788889999999999999886544433333 23322   26899999999998864

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09866 hypothetical protein; Provisional

Probab=99.55  E-value=5.8e-13  Score=113.87  Aligned_cols=108  Identities=15%  Similarity=0.135  Sum_probs=71.4

Q ss_pred             EEEEEeCCCchhh-----hchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027417           64 KAQIWDTAGQERF-----RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT  138 (223)
Q Consensus        64 ~~~l~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~  138 (223)
                      .+.|+||||....     .......+..+|++++|+|.....+... ....+.+.... ...|+++|+||+|+.+.....
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence            4679999996442     2234457899999999999987533332 22333343322 135999999999986432222


Q ss_pred             HHHHHHHHH----HcCC---eEEEEccCCCCCHHHHHHHHHH
Q 027417          139 TAEGKALAE----AQGL---FFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus       139 ~~~~~~~~~----~~~~---~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      .+....+..    ....   .+|++||++|.|++++++.|..
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            444444422    2222   4999999999999999999875

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.55  E-value=5.4e-14  Score=95.29  Aligned_cols=135  Identities=21%  Similarity=0.242  Sum_probs=97.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC----chhhhchhHhhhcCCCEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----QERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~~i   91 (223)
                      |++++|..|+|||||.+.|.+....  +..|-.       +.++...    .+||||    +..+..........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            7899999999999999999885432  222211       2222222    679999    3444444555667899999


Q ss_pred             EEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHH
Q 027417           92 LVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ  169 (223)
Q Consensus        92 ~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~  169 (223)
                      +|-.++++++ |..      .+...  ...|+|-|++|.|+.+.  ...+..+.+..+-|.. +|++|+.++.|+++++.
T Consensus        70 ~v~~and~~s~f~p------~f~~~--~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~  139 (148)
T COG4917          70 YVHAANDPESRFPP------GFLDI--GVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVD  139 (148)
T ss_pred             eeecccCccccCCc------ccccc--cccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence            9999999876 221      11111  24669999999999963  3456777788888875 99999999999999999


Q ss_pred             HHHH
Q 027417          170 TVVT  173 (223)
Q Consensus       170 ~l~~  173 (223)
                      .|..
T Consensus       140 ~L~~  143 (148)
T COG4917         140 YLAS  143 (148)
T ss_pred             HHHh
Confidence            8864

>PRK00007 elongation factor G; Reviewed

Probab=99.55  E-value=2.8e-13  Score=120.39  Aligned_cols=119  Identities=18%  Similarity=0.158  Sum_probs=79.7

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhc--CCCCC---CCC-----------ccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFAR--DEFYP---NSK-----------STIGVEFQTQKMDINGKEVKAQIWDTAGQE   74 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~--~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   74 (223)
                      .+...+|+|+|++++|||||+++|+.  +....   ...           ...|.+.......+......+.++||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            45578999999999999999999974  11100   000           111233333333333334678899999998


Q ss_pred             hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      .+.......+..+|++|+|+|+...-.-+...-|. .+..   .+.|+++++||+|+..
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~---~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK---YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCCCC
Confidence            87776777789999999999988764444333332 2222   2688999999999864

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.54  E-value=3.5e-13  Score=111.89  Aligned_cols=83  Identities=18%  Similarity=0.196  Sum_probs=56.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE---------------------C-CEEEEEEEEeCCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI---------------------N-GKEVKAQIWDTAG   72 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~D~~G   72 (223)
                      ++|+|+|.|+||||||+++|++........+..+.+.......+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999987665433333233333322221                     1 1346789999999


Q ss_pred             ch----hhhchhHh---hhcCCCEEEEEEECC
Q 027417           73 QE----RFRAVTSA---YYRGAVGALLVYDIS   97 (223)
Q Consensus        73 ~~----~~~~~~~~---~~~~~d~~i~v~d~~   97 (223)
                      ..    ....+...   .++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            42    22223333   378999999999996

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=6.1e-14  Score=99.56  Aligned_cols=155  Identities=18%  Similarity=0.221  Sum_probs=111.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      +..=|++++|-.++|||||++.|..+... ...||.-.+...  ..+  .+.+++-+|.+|+..-+..|..++..+|+++
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE~--l~I--g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv   92 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEE--LSI--GGMTFTTFDLGGHLQARRVWKDYFPQVDAIV   92 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChHH--hee--cCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence            34568999999999999999999876543 233332222222  222  4478889999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHH---HHHcC-----------C---eE
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKAL---AEAQG-----------L---FF  153 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~-----------~---~~  153 (223)
                      +.+|+.+.+.|.+.+..+..+... .-...|+++.+||+|...+-  +.++.+..   ....+           +   .+
T Consensus        93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev  170 (193)
T KOG0077|consen   93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV  170 (193)
T ss_pred             eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence            999999999998887777665433 23469999999999988642  34443322   11111           1   26


Q ss_pred             EEEccCCCCCHHHHHHHHHH
Q 027417          154 METSALDSSNVTAAFQTVVT  173 (223)
Q Consensus       154 ~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      |.||...+.+-.+.|.|+.+
T Consensus       171 fmcsi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  171 FMCSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             EEEEEEccCccceeeeehhh
Confidence            77898888887777777643

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.52  E-value=4.9e-14  Score=125.57  Aligned_cols=126  Identities=18%  Similarity=0.142  Sum_probs=85.4

Q ss_pred             cccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCC---------------CCCC---CCccceeEeEEEEEEECCEEEEE
Q 027417            4 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDE---------------FYPN---SKSTIGVEFQTQKMDINGKEVKA   65 (223)
Q Consensus         4 ~~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~   65 (223)
                      ..+.....+...||+|+|+.++|||||+++|+...               +.+.   +..|.........+.+++..+.+
T Consensus         9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i   88 (720)
T TIGR00490         9 IKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLI   88 (720)
T ss_pred             HHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEE
Confidence            33344445667999999999999999999997521               1110   11122222222233456677899


Q ss_pred             EEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           66 QIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        66 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      .+|||||+..+.......++.+|++|+|+|+......+....|.. +.   ..+.|+++++||+|...
T Consensus        89 ~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        89 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL---KENVKPVLFINKVDRLI  152 (720)
T ss_pred             EEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH---HcCCCEEEEEEChhccc
Confidence            999999999888888888999999999999987533333222322 11   22578889999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.51  E-value=4.2e-14  Score=104.38  Aligned_cols=117  Identities=23%  Similarity=0.319  Sum_probs=70.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE-CCEEEEEEEEeCCCchhhhchhHhh---hcCCCE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRAVTSAY---YRGAVG   89 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~---~~~~d~   89 (223)
                      ...|+|+|+.|||||+|...|..+......... ..  .. ...+ ......+.++|+|||.+.+......   ...+-+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~--n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-EN--NI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SE--EE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cC--Cc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            357999999999999999999998543322211 11  11 1112 2233467799999999877654443   788999


Q ss_pred             EEEEEECCC-HhhHHHHHH-HHHHHh--hcCCCCCcEEEEEeCCCCCCC
Q 027417           90 ALLVYDISR-RQTFDSIGR-WLNELH--THSDMNVVTILVGNKSDLKDA  134 (223)
Q Consensus        90 ~i~v~d~~~-~~s~~~~~~-~~~~i~--~~~~~~~p~ivv~nK~Dl~~~  134 (223)
                      +|||+|.+. +..+..+.. ++..+.  ......+|++|++||.|+..+
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            999999985 334444433 333332  223457999999999998753

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.50  E-value=2.8e-13  Score=111.67  Aligned_cols=179  Identities=16%  Similarity=0.138  Sum_probs=127.7

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----hhchhHh--
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FRAVTSA--   82 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~--   82 (223)
                      ..++....++|+|.|++|||||++.++.......+.++++......  .++-....++++||||.-.    ..++.++  
T Consensus       163 sIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqs  240 (620)
T KOG1490|consen  163 AIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI  240 (620)
T ss_pred             CCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence            4456678899999999999999999998777766666644333333  3344567788999999321    1112211  


Q ss_pred             ---hhcCCCEEEEEEECCC--HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH---HHHHHHHcCCeEE
Q 027417           83 ---YYRGAVGALLVYDISR--RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAE---GKALAEAQGLFFM  154 (223)
Q Consensus        83 ---~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~  154 (223)
                         ...--.+|+++.|++.  ..|...-..++..+..... +.|+|+|+||+|......++.+.   ...+...-+++++
T Consensus       241 ITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~  319 (620)
T KOG1490|consen  241 ITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVV  319 (620)
T ss_pred             HHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEE
Confidence               1122346788999987  4566776777878776655 69999999999998766555443   3333444458899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 027417          155 ETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELK  190 (223)
Q Consensus       155 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~  190 (223)
                      ++|..+.+|+-++....+.+++..+....+......
T Consensus       320 ~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~  355 (620)
T KOG1490|consen  320 QTSCVQEEGVMDVRTTACEALLAARVEQKLKSESRV  355 (620)
T ss_pred             EecccchhceeeHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999999999998887776554333

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.49  E-value=1.5e-12  Score=118.22  Aligned_cols=143  Identities=20%  Similarity=0.202  Sum_probs=91.9

Q ss_pred             CHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-E---------------EEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           26 GKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-K---------------EVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        26 GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      +||||+++|.+........-.++.......+..+. .               .-.+.||||||++.+..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            49999999998776543332222222222222221 0               0127899999999998888888889999


Q ss_pred             EEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC------------HHHH-HH-------H-
Q 027417           90 ALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT------------TAEG-KA-------L-  145 (223)
Q Consensus        90 ~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~------------~~~~-~~-------~-  145 (223)
                      +++|+|+++   +.+++.+..    +..   .+.|+++|+||+|+.......            .+.+ .+       + 
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~~----lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAINI----LRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHHH----HHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            999999987   555554432    222   258999999999986321100            0100 00       0 


Q ss_pred             --HHH---------------cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          146 --AEA---------------QGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       146 --~~~---------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                        ...               -.++++++||++|+|++++++.|....
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence              011               135799999999999999998776433

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.49  E-value=9.7e-13  Score=110.25  Aligned_cols=163  Identities=19%  Similarity=0.296  Sum_probs=124.4

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   86 (223)
                      .++.....+++.++|+.++|||.|++.++++.+......+....+....+.+.+....+.+-|.+-. ....+...- ..
T Consensus       418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~  495 (625)
T KOG1707|consen  418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA  495 (625)
T ss_pred             cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence            4455677899999999999999999999999888766566566666666667777777888888753 222222222 78


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHcCCe-EEEEccCCCCCH
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAEAQGLF-FMETSALDSSNV  164 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i  164 (223)
                      +|+++++||.+++.+|+.+...++.-...  .+.|+++|++|+|+.+..+ ..... .+++.+++++ ...+|.+.... 
T Consensus       496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-  571 (625)
T KOG1707|consen  496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-  571 (625)
T ss_pred             eeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-
Confidence            99999999999999999988776665443  4799999999999987643 33334 8899999987 67778775333 


Q ss_pred             HHHHHHHHHHH
Q 027417          165 TAAFQTVVTEI  175 (223)
Q Consensus       165 ~~~~~~l~~~~  175 (223)
                      .++|..|+.++
T Consensus       572 ~~lf~kL~~~A  582 (625)
T KOG1707|consen  572 NELFIKLATMA  582 (625)
T ss_pred             chHHHHHHHhh
Confidence            88998887655

>PRK12740 elongation factor G; Reviewed

Probab=99.48  E-value=9.7e-13  Score=116.91  Aligned_cols=110  Identities=20%  Similarity=0.183  Sum_probs=73.9

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCC----C------------ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhh
Q 027417           20 IGDSAVGKSNLLARFARDEFYPNS----K------------STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY   83 (223)
Q Consensus        20 ~G~~~sGKStli~~l~~~~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~   83 (223)
                      +|++++|||||+++|+...-....    .            ...|.+.......+....+.+.+|||||+..+...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999643111000    0            001222222222233344788999999998887778888


Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      +..+|++|+|+|.+..........|. .+..   .+.|+++|+||+|+..
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~---~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETVWR-QAEK---YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH---cCCCEEEEEECCCCCC
Confidence            89999999999999876555443332 2222   2689999999999764

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.48  E-value=1e-12  Score=110.57  Aligned_cols=165  Identities=18%  Similarity=0.348  Sum_probs=117.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC--CEEEEEEEEeCCCchhhhchhHhhhcC---
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN--GKEVKAQIWDTAGQERFRAVTSAYYRG---   86 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~---   86 (223)
                      ...-.|+|+|..++|||||+.+|.+..   .+.++.+.+|....+.-.  +...++.+|...|...+..+....+..   
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            345789999999999999999987643   344555666655554332  234568999998866666666655543   


Q ss_pred             -CCEEEEEEECCCHhh-HHHHHHHHHHHhhcC------------------------------------------------
Q 027417           87 -AVGALLVYDISRRQT-FDSIGRWLNELHTHS------------------------------------------------  116 (223)
Q Consensus        87 -~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~------------------------------------------------  116 (223)
                       --++|+|+|.+.|+. ++.+..|+..+..+.                                                
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~  179 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD  179 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence             346899999999976 456666655443200                                                


Q ss_pred             --------------CCCCcEEEEEeCCCCCC----Ccc-------cCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417          117 --------------DMNVVTILVGNKSDLKD----ARE-------VTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus       117 --------------~~~~p~ivv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                                    +.++|++||++|+|...    ...       .-.+-.+.+|..+|+.+|.+|++...+++.++..|
T Consensus       180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence                          01479999999999642    111       11233677889999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027417          172 VTEIYNIL  179 (223)
Q Consensus       172 ~~~~~~~~  179 (223)
                      .++++..-
T Consensus       260 ~h~l~~~~  267 (472)
T PF05783_consen  260 LHRLYGFP  267 (472)
T ss_pred             HHHhccCC
Confidence            98886543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.48  E-value=9.4e-13  Score=102.91  Aligned_cols=122  Identities=16%  Similarity=0.180  Sum_probs=72.1

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchhhh--c-h-----
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFR--A-V-----   79 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--~-~-----   79 (223)
                      +.....++|+|+|.+|||||||+|+|++........ ...+..........++  ..+.+|||||.....  . .     
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~  103 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL  103 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence            455678999999999999999999999876543222 1112222222233333  678899999955331  0 1     


Q ss_pred             --hHhhh--cCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCC--CCcEEEEEeCCCCCC
Q 027417           80 --TSAYY--RGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDM--NVVTILVGNKSDLKD  133 (223)
Q Consensus        80 --~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~  133 (223)
                        ...++  ...|++++|..++... .... ...++.+......  -.++++|.||+|...
T Consensus       104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence              11222  2678888887666431 2221 1222333222111  257999999999764

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.48  E-value=1.2e-12  Score=104.10  Aligned_cols=124  Identities=13%  Similarity=0.141  Sum_probs=72.3

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch-------h
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV-------T   80 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~   80 (223)
                      +.....++|+|+|.+|+||||++|+|++........ .+.+.+.........  +..+.+|||||.......       .
T Consensus        33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~i  110 (313)
T TIGR00991        33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNII  110 (313)
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHH
Confidence            334667999999999999999999999876532211 222222222222233  467889999996543221       1


Q ss_pred             Hhhh--cCCCEEEEEEECCCH--hhH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           81 SAYY--RGAVGALLVYDISRR--QTF-DSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        81 ~~~~--~~~d~~i~v~d~~~~--~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      ..++  ...|++|+|..++..  ... ..+-..+..+.... .-.++|++.|+.|....+
T Consensus       111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~-iw~~~IVVfTh~d~~~pd  169 (313)
T TIGR00991       111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD-IWRKSLVVLTHAQFSPPD  169 (313)
T ss_pred             HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh-hhccEEEEEECCccCCCC
Confidence            1111  269999999665532  111 11222222222111 125789999999976433

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.47  E-value=1e-12  Score=104.25  Aligned_cols=153  Identities=24%  Similarity=0.221  Sum_probs=107.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC----------CC---------------------CccceeEeEEEEEEEC
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP----------NS---------------------KSTIGVEFQTQKMDIN   59 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~----------~~---------------------~~~~~~~~~~~~~~~~   59 (223)
                      ....++++-+|...=||||||-+|+.+....          .+                     ..--|+++.....++.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            4567999999999999999999998742110          00                     0111456666667777


Q ss_pred             CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 027417           60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT  139 (223)
Q Consensus        60 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~  139 (223)
                      -...+|.+.|||||+.|.+.+-.-...||+.|+++|+...-.-+.  .-...+..... -.++|+++||+||.+-.+-.+
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QT--rRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQT--RRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHh--HHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence            777889999999999999988888889999999999965322111  11222222222 266888899999986443333


Q ss_pred             H----HHHHHHHHcCCe---EEEEccCCCCCHHH
Q 027417          140 A----EGKALAEAQGLF---FMETSALDSSNVTA  166 (223)
Q Consensus       140 ~----~~~~~~~~~~~~---~~~~Sa~~~~~i~~  166 (223)
                      +    +-..|+..+++.   ++++||..|.|+-.
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            3    344577888764   89999999999754

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.47  E-value=4.1e-13  Score=93.90  Aligned_cols=114  Identities=32%  Similarity=0.373  Sum_probs=82.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      +||+++|+.|+|||+|+.++....+...+. ++.+                           +........+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997766643333 3322                           222334456788999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  165 (223)
                      |+.++..+++.+  |...+....+...|.++++||.|+.+...+..++..        .++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999998876  877776655567889999999998543344333332        35677889999884

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=6.9e-13  Score=98.23  Aligned_cols=155  Identities=19%  Similarity=0.245  Sum_probs=100.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhc---CCCEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYR---GAVGA   90 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~---~~d~~   90 (223)
                      .-.|+++|+.+||||+|.-.|..+.......   ..+.....+.+...  ..+++|.|||.+.+.-...+++   .+-++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            3679999999999999999998874433222   22222333333322  2679999999998887777776   78899


Q ss_pred             EEEEECCC--HhhHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCcc------------------------------
Q 027417           91 LLVYDISR--RQTFDSIGRWLNELHTH--SDMNVVTILVGNKSDLKDARE------------------------------  136 (223)
Q Consensus        91 i~v~d~~~--~~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~Dl~~~~~------------------------------  136 (223)
                      |||+|...  ++-.+-.+..+..+...  ...++|++++.||.|+.-+..                              
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~  192 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI  192 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence            99999765  22233334444444433  355788999999999753210                              


Q ss_pred             ----cCHHHHHHH--HH--HcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417          137 ----VTTAEGKAL--AE--AQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       137 ----~~~~~~~~~--~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                          ....++.+|  +.  ...+.|.++|++++ +++++-+||.+.
T Consensus       193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                011111111  11  12345788999998 899999998764

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=5.7e-13  Score=114.12  Aligned_cols=170  Identities=22%  Similarity=0.196  Sum_probs=115.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----ccceeEeEEEEE--------EECC----EEEEEEEEeCCCchhh
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSK----STIGVEFQTQKM--------DING----KEVKAQIWDTAGQERF   76 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~--------~~~~----~~~~~~l~D~~G~~~~   76 (223)
                      +.+-|||+|+..+|||-|+..+.+.++.....    +.+|.++....-        .-++    .---+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            45679999999999999999999876654333    223333333220        0000    1113679999999999


Q ss_pred             hchhHhhhcCCCEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------c-------cCHH
Q 027417           77 RAVTSAYYRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR------E-------VTTA  140 (223)
Q Consensus        77 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------~-------~~~~  140 (223)
                      ..++......||+.|+|+|+.+   +.+++++    +.+   ...+.|+||++||+|..-..      .       ....
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lL---R~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~  626 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLL---RMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD  626 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhHHH----HHH---HhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence            9999999999999999999987   4444442    222   23378999999999964210      0       0000


Q ss_pred             H-----------HHHHHH-HcC-------------CeEEEEccCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 027417          141 E-----------GKALAE-AQG-------------LFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQEL  189 (223)
Q Consensus       141 ~-----------~~~~~~-~~~-------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~  189 (223)
                      -           +.+|+. .++             +.++++||.+|+||-+++-+|++..-..|..++.....+
T Consensus       627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev  700 (1064)
T KOG1144|consen  627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEV  700 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence            0           111211 111             236789999999999999999999999998888655443

>PTZ00258 GTP-binding protein; Provisional

Probab=99.44  E-value=3.6e-12  Score=104.95  Aligned_cols=87  Identities=16%  Similarity=0.196  Sum_probs=61.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCE---------------EEEEEEEeCCCchh
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQER   75 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~   75 (223)
                      ....++|+|+|.|+||||||+++|++........|.++.+.....+.+.+.               ..++.++|+||...
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            355689999999999999999999887665544455455555555544432               23588999999432


Q ss_pred             -------hhchhHhhhcCCCEEEEEEECC
Q 027417           76 -------FRAVTSAYYRGAVGALLVYDIS   97 (223)
Q Consensus        76 -------~~~~~~~~~~~~d~~i~v~d~~   97 (223)
                             ........++.+|++++|+|..
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                   1222334568899999999973

>cd00066 G-alpha G protein alpha subunit

Probab=99.43  E-value=9.2e-12  Score=100.98  Aligned_cols=118  Identities=19%  Similarity=0.219  Sum_probs=83.2

Q ss_pred             EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH----------hhHHHHHHHHHHHh-hcCCCCCcEEEEEeCC
Q 027417           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR----------QTFDSIGRWLNELH-THSDMNVVTILVGNKS  129 (223)
Q Consensus        61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~-~~~~~~~p~ivv~nK~  129 (223)
                      ..+.+.+||++|+...+..|.+++.+++++|+|+|+++.          ..+......+..+- ...-.+.|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            346788999999999999999999999999999999873          23333333333332 2233479999999999


Q ss_pred             CCCCC----------------cccCHHHHHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027417          130 DLKDA----------------REVTTAEGKALAEA----------QGLFFMETSALDSSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       130 Dl~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  178 (223)
                      |+.++                .....+.+..+...          ..+....++|.+..+++.+|+.+...+...
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            96321                12234454444321          123456789999999999999998877654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.43  E-value=2.6e-12  Score=98.51  Aligned_cols=160  Identities=20%  Similarity=0.235  Sum_probs=89.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--ccceeEeEEEEEEECCEEEEEEEEeCCCchhhh----c----hh---H
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK--STIGVEFQTQKMDINGKEVKAQIWDTAGQERFR----A----VT---S   81 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~----~~---~   81 (223)
                      ++|+|+|..||||||++|.+++........  ...+.........+.+  ..+.++||||.....    .    +.   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999987655432  1222233344445666  556799999932211    1    11   1


Q ss_pred             hhhcCCCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-------HHHHHHHHHHcCCe
Q 027417           82 AYYRGAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT-------TAEGKALAEAQGLF  152 (223)
Q Consensus        82 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~  152 (223)
                      ....+.+++|+|+.+... +-.  ..-.++..+....- -..++||.|..|......+.       ....+.+.+.++-.
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCcc-hHHHHHHHHHHHHHccHHH-HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            123579999999999842 211  12233333322211 25688888988866543311       12245566777877


Q ss_pred             EEEEccC------CCCCHHHHHHHHHHHHHHH
Q 027417          153 FMETSAL------DSSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       153 ~~~~Sa~------~~~~i~~~~~~l~~~~~~~  178 (223)
                      |...+.+      ....+.++++.+-..+.+.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            8777666      2244566666655444433

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.41  E-value=3.6e-12  Score=114.02  Aligned_cols=123  Identities=19%  Similarity=0.186  Sum_probs=81.8

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----------c---cceeEeE----EEEEEECCEEEEEEEE
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-----------S---TIGVEFQ----TQKMDINGKEVKAQIW   68 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-----------~---~~~~~~~----~~~~~~~~~~~~~~l~   68 (223)
                      .....+...+|+|+|+.++|||||+.+|+...-.....           +   .-+.+..    ...+...+..+.+.|+
T Consensus        13 ~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~li   92 (731)
T PRK07560         13 LMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLI   92 (731)
T ss_pred             HhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEE
Confidence            33445677899999999999999999997532111000           0   0011111    1122234456788999


Q ss_pred             eCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        69 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      ||||+..+.......++.+|++|+|+|....-..+...-|..... .   +.|+|+++||+|+..
T Consensus        93 DtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~-~---~~~~iv~iNK~D~~~  153 (731)
T PRK07560         93 DTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR-E---RVKPVLFINKVDRLI  153 (731)
T ss_pred             cCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH-c---CCCeEEEEECchhhc
Confidence            999999988888888899999999999987543333333332222 1   467899999999763

>TIGR00101 ureG urease accessory protein UreG

Probab=99.40  E-value=5.3e-12  Score=95.69  Aligned_cols=102  Identities=13%  Similarity=0.046  Sum_probs=63.8

Q ss_pred             EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEG  142 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  142 (223)
                      ....++++.|..-...... .  -+|.+|.|+|+.+.++...  .+...+      ...-++++||+|+.+......+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence            4456778887322111111 1  2678999999998665321  111121      122389999999985322233443


Q ss_pred             HHHHHH--cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          143 KALAEA--QGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       143 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      .+..+.  .+.+++++||++|+|++++|++|.+.+
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            444443  457799999999999999999998654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.40  E-value=1.6e-12  Score=101.58  Aligned_cols=96  Identities=18%  Similarity=0.228  Sum_probs=78.9

Q ss_pred             hhhhchhHhhhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe
Q 027417           74 ERFRAVTSAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF  152 (223)
Q Consensus        74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  152 (223)
                      +++..+...+++++|++++|+|++++. +++.+..|+..+..   .++|+++|+||+|+.+.+.+..+.+..+ ...+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            667777778899999999999999887 89999999987653   3699999999999976444444444444 357889


Q ss_pred             EEEEccCCCCCHHHHHHHHHH
Q 027417          153 FMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus       153 ~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      ++++||+++.|++++|+.+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999998864

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.39  E-value=1.4e-12  Score=117.98  Aligned_cols=122  Identities=19%  Similarity=0.186  Sum_probs=83.6

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------Cc---cceeEeE--EEEEEE------------
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-----------KS---TIGVEFQ--TQKMDI------------   58 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~-----------~~---~~~~~~~--~~~~~~------------   58 (223)
                      .....+...+|+|+|+.++|||||+++|+...-....           .+   ..|.+..  .....+            
T Consensus        12 ~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~   91 (843)
T PLN00116         12 IMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKG   91 (843)
T ss_pred             HhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccc
Confidence            3445667889999999999999999999854311000           00   0011111  111111            


Q ss_pred             --CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           59 --NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        59 --~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                        .+..+.++++||||+..|.......++.+|++|+|+|+...-......-|....    ..++|+|+++||+|+.
T Consensus        92 ~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~----~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         92 ERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRC  163 (843)
T ss_pred             ccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH----HCCCCEEEEEECCccc
Confidence              123577899999999999888888899999999999999865444433343322    2368999999999986

>smart00275 G_alpha G protein alpha subunit

Probab=99.36  E-value=3.2e-11  Score=98.61  Aligned_cols=118  Identities=16%  Similarity=0.169  Sum_probs=81.9

Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH----------hhHHHHHHHHHHHhh-cCCCCCcEEEEEeCCC
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR----------QTFDSIGRWLNELHT-HSDMNVVTILVGNKSD  130 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~D  130 (223)
                      .+.+.+||++|+...+..|.+++.+++++|+|+|+++.          ..+......+..+-. ..-.+.|++|++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            35678999999999999999999999999999999973          234443344444432 2334799999999999


Q ss_pred             CCCC---------------cccCHHHHHHHHH-----Hc------CCeEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 027417          131 LKDA---------------REVTTAEGKALAE-----AQ------GLFFMETSALDSSNVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       131 l~~~---------------~~~~~~~~~~~~~-----~~------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  179 (223)
                      +...               ...+.+.+..+..     ..      .+..+.++|.+-.++..+|+.+...+.+..
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            6431               0123334443321     11      234567889999999999999887776543

Subunit of G proteins that contains the guanine nucleotide binding site

>PTZ00416 elongation factor 2; Provisional

Probab=99.36  E-value=3.1e-12  Score=115.63  Aligned_cols=120  Identities=19%  Similarity=0.188  Sum_probs=80.2

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc--------------cceeEeE--EEEEEEC--------CEEEE
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKS--------------TIGVEFQ--TQKMDIN--------GKEVK   64 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~--------------~~~~~~~--~~~~~~~--------~~~~~   64 (223)
                      +..+...+|+|+|+.++|||||+++|+...-......              .-|.+..  .....+.        +..+.
T Consensus        14 ~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~   93 (836)
T PTZ00416         14 DNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFL   93 (836)
T ss_pred             hCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceE
Confidence            3356678999999999999999999986321100000              0011111  1112222        22567


Q ss_pred             EEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           65 AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        65 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                      +.|+||||+..+.......++.+|++|+|+|+...-.-....-| ..+..   .+.|+|+++||+|+.
T Consensus        94 i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         94 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence            89999999999888888888999999999999885443333333 23222   258999999999986

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=8.3e-12  Score=104.76  Aligned_cols=203  Identities=22%  Similarity=0.145  Sum_probs=129.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------------------CCCccceeEeEEEEEEECCE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP-----------------------------NSKSTIGVEFQTQKMDINGK   61 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   61 (223)
                      ....++++++|+..+|||||+.+|+...-..                             ....--|++.......++-.
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~  253 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK  253 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence            3467999999999999999999987621100                             00112256677777777777


Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh---hHHHHH--HHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ---TFDSIG--RWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~--~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      ...++|+|+||+..|......-...+|+.|+|+|.+..+   +|+...  +....+.+... -..+||++||+|+.+..+
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq  332 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQ  332 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccH
Confidence            788999999999999998988889999999999998632   233211  11222222222 356788899999988665


Q ss_pred             cCHHHHH----HHH-HHcC-----CeEEEEccCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhccCCCCCCceeeecC
Q 027417          137 VTTAEGK----ALA-EAQG-----LFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEG  206 (223)
Q Consensus       137 ~~~~~~~----~~~-~~~~-----~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (223)
                      -..+++.    .|. +..|     +.|++||+.+|+|+-..-..  ..+.+++.-+-......+-.....+-.+|++.-.
T Consensus       333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~--~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltI  410 (603)
T KOG0458|consen  333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQE--NELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTI  410 (603)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccc--hhhhhhhcCChHHHHHhhccCCCCcccCCeEEEh
Confidence            5555543    333 3444     45999999999997654211  1345555555444443433333333555666555


Q ss_pred             CCcccccCCC
Q 027417          207 EKKEADAEPK  216 (223)
Q Consensus       207 ~~~~~~~~~~  216 (223)
                      ..-....+.+
T Consensus       411 sdi~~~~~~~  420 (603)
T KOG0458|consen  411 SDIYPLPSSG  420 (603)
T ss_pred             hheeecCCCe
Confidence            4444433333

>PRK13768 GTPase; Provisional

Probab=99.35  E-value=7.4e-12  Score=98.39  Aligned_cols=109  Identities=18%  Similarity=0.145  Sum_probs=68.4

Q ss_pred             EEEEEeCCCchhh---hchhHhhh---cC--CCEEEEEEECCCHhhHHHH--HHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           64 KAQIWDTAGQERF---RAVTSAYY---RG--AVGALLVYDISRRQTFDSI--GRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        64 ~~~l~D~~G~~~~---~~~~~~~~---~~--~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      .+.+||+||+.+.   ...+..+.   ..  ++++++++|..........  ..|+...... ..+.|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            5779999997653   22332222   22  8999999999764432222  2222222211 23699999999999875


Q ss_pred             CcccCHHHHHH----------------------------HHHHcC--CeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          134 AREVTTAEGKA----------------------------LAEAQG--LFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       134 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ..+.  ++...                            .....+  .+++++|++++.|+++++++|.+.+
T Consensus       177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            4322  11111                            112223  4689999999999999999997665

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.34  E-value=4.9e-11  Score=97.25  Aligned_cols=83  Identities=17%  Similarity=0.143  Sum_probs=58.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEE---------------EEEEEEeCCCchh----
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKE---------------VKAQIWDTAGQER----   75 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~----   75 (223)
                      ++|+|+|.|+||||||+++|++........|.++.+.....+.+.+..               ..+.++|+||...    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999877544444444445555555554421               3588999999432    


Q ss_pred             ---hhchhHhhhcCCCEEEEEEECC
Q 027417           76 ---FRAVTSAYYRGAVGALLVYDIS   97 (223)
Q Consensus        76 ---~~~~~~~~~~~~d~~i~v~d~~   97 (223)
                         ........++.+|++++|+|..
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1122333468999999999984

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.33  E-value=2.5e-11  Score=92.75  Aligned_cols=153  Identities=12%  Similarity=0.135  Sum_probs=85.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCC-C-----------CCCc----cceeEeEEEE---E-------------EE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFY-P-----------NSKS----TIGVEFQTQK---M-------------DI   58 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~-~-----------~~~~----~~~~~~~~~~---~-------------~~   58 (223)
                      ......|+|+|+.|+|||||++++...... .           ..+.    ..+.......   .             ..
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~   98 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL   98 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence            345788999999999999999998753110 0           0000    0000000000   0             00


Q ss_pred             CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027417           59 NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT  138 (223)
Q Consensus        59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~  138 (223)
                      ......+.++|+.|.-..   ...+....+..+.++|+.+.+....  .. ...     ...|.++++||+|+.......
T Consensus        99 ~~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~~--~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~  167 (207)
T TIGR00073        99 PLDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKPL--KY-PGM-----FKEADLIVINKADLAEAVGFD  167 (207)
T ss_pred             ccCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchhh--hh-HhH-----HhhCCEEEEEHHHccccchhh
Confidence            001235567777772110   0111123455567777775432111  00 011     146789999999997533223


Q ss_pred             HHHHHHHHHHcC--CeEEEEccCCCCCHHHHHHHHHHH
Q 027417          139 TAEGKALAEAQG--LFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       139 ~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      .++.....+..+  ++++++||+++.|++++++++.+.
T Consensus       168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            344444444443  789999999999999999999764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.32  E-value=4.6e-11  Score=96.69  Aligned_cols=104  Identities=14%  Similarity=0.098  Sum_probs=66.5

Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CH
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TT  139 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~  139 (223)
                      ++.+.|+||+|.......   ....+|.++++.+...++.+....   ..+.     ...-++|+||+|+......  ..
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~-----E~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIM-----ELADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhh-----hhhheEEeehhcccchhHHHHHH
Confidence            467889999996533222   456799999997755554444332   1121     2234899999998753211  11


Q ss_pred             HHHHHHHHH-------cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417          140 AEGKALAEA-------QGLFFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       140 ~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      .+.......       +..+++.+||+++.|++++++.|.+.+-
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            222222221       2257999999999999999999987654

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.30  E-value=1.7e-10  Score=87.93  Aligned_cols=106  Identities=22%  Similarity=0.191  Sum_probs=76.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYRG   86 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~   86 (223)
                      --+|+++|-|++|||||+..++..........+++.+..+..+.+++  ..+++.|.||.-.       ..+...+..+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence            47899999999999999999987665555555556666677777776  5567999999433       23344556789


Q ss_pred             CCEEEEEEECCCHhhH-HHHHHHHHHHhhcCCCCCc
Q 027417           87 AVGALLVYDISRRQTF-DSIGRWLNELHTHSDMNVV  121 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p  121 (223)
                      +|.+++|+|++..+.- +-+++.++.+.-+.+..+|
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~P  175 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKP  175 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCC
Confidence            9999999999986653 3456777776554443333

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.30  E-value=8e-11  Score=96.28  Aligned_cols=163  Identities=18%  Similarity=0.229  Sum_probs=98.3

Q ss_pred             cccccccCCeeeEEEEEcCCCCCHHHHHHHHhcC----CCCC----------CCCccce---eEeEEEE-------EEE-
Q 027417            4 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARD----EFYP----------NSKSTIG---VEFQTQK-------MDI-   58 (223)
Q Consensus         4 ~~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~----~~~~----------~~~~~~~---~~~~~~~-------~~~-   58 (223)
                      |.+-..+....+-|.|+|+.++|||||+++|.+.    +...          -.....|   ++..++.       +.. 
T Consensus         7 ykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~   86 (492)
T TIGR02836         7 YKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININ   86 (492)
T ss_pred             HHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEecc
Confidence            3444556677899999999999999999999987    3320          1111122   2222222       211 


Q ss_pred             CCEEEEEEEEeCCCchhh--------hc---------------------hhHhhhc-CCCEEEEEE-ECC----CHhhH-
Q 027417           59 NGKEVKAQIWDTAGQERF--------RA---------------------VTSAYYR-GAVGALLVY-DIS----RRQTF-  102 (223)
Q Consensus        59 ~~~~~~~~l~D~~G~~~~--------~~---------------------~~~~~~~-~~d~~i~v~-d~~----~~~s~-  102 (223)
                      ++....+.++||+|...-        ..                     -+...+. ++|+.|+|. |.+    .++.+ 
T Consensus        87 ~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~  166 (492)
T TIGR02836        87 EGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYV  166 (492)
T ss_pred             CCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccch
Confidence            344567889999992211        11                     0223444 899999988 764    11222 


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC--CCCCHHHHHHHH
Q 027417          103 DSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL--DSSNVTAAFQTV  171 (223)
Q Consensus       103 ~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~l  171 (223)
                      +.-..|+..+...   ++|+++++|+.|.....  ..+.+..+..+++++++.+|+.  +...|..+++.+
T Consensus       167 ~aEe~~i~eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~v  232 (492)
T TIGR02836       167 EAEERVIEELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEV  232 (492)
T ss_pred             HHHHHHHHHHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence            2235566666554   79999999999943211  4455556667788887776653  445555555543

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.29  E-value=1e-10  Score=96.00  Aligned_cols=159  Identities=20%  Similarity=0.256  Sum_probs=108.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCC----------C--ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARD--EFYPNS----------K--STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA   78 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~--~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~   78 (223)
                      ...+|+|+-+...|||||++.|+..  .+....          +  .--|.++-.+.--+..+.+.+.++|||||..|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            4578999999999999999999753  121110          0  1124444444444455668899999999999999


Q ss_pred             hhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHH-------HcC
Q 027417           79 VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAE-------AQG  150 (223)
Q Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~  150 (223)
                      -.+..+.-.|++++++|+.+.- +..-+.-   +.+....+.+.|+|+||+|...++. .-.+++.++..       +++
T Consensus        84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFV---lkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd  159 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGP-MPQTRFV---LKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD  159 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCC-CCchhhh---HHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence            9999999999999999998731 1111111   2222333678899999999987653 23445555544       445


Q ss_pred             CeEEEEccCCC----------CCHHHHHHHHHHHH
Q 027417          151 LFFMETSALDS----------SNVTAAFQTVVTEI  175 (223)
Q Consensus       151 ~~~~~~Sa~~~----------~~i~~~~~~l~~~~  175 (223)
                      .|++..|+..|          .++..+|+.|++++
T Consensus       160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv  194 (603)
T COG1217         160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHV  194 (603)
T ss_pred             CcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence            67888888755          35777888877665

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=9.7e-11  Score=92.92  Aligned_cols=160  Identities=16%  Similarity=0.172  Sum_probs=96.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCC----CCCCCCccc-eeEeEE--EEEE-------ECCEEEEEEEEeCCCchhhh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDE----FYPNSKSTI-GVEFQT--QKMD-------INGKEVKAQIWDTAGQERFR   77 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~----~~~~~~~~~-~~~~~~--~~~~-------~~~~~~~~~l~D~~G~~~~~   77 (223)
                      +..+++.|+|+..||||||.++|....    ++.....+. |.+.+.  ..+.       -.++...++++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            445999999999999999999997532    222211111 111111  1111       14566789999999998877


Q ss_pred             chhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC-cccC--HHHHHHHHHHc-----
Q 027417           78 AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA-REVT--TAEGKALAEAQ-----  149 (223)
Q Consensus        78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-~~~~--~~~~~~~~~~~-----  149 (223)
                      +.......-.|..++|+|+.....-+..+-.  .+....  -...|+|+||+|...+ ...+  .+.+....+.+     
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f  160 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF  160 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence            6666666778899999999875443333222  122221  2345777787776533 2211  12233333222     


Q ss_pred             --CCeEEEEccCCC----CCHHHHHHHHHHHH
Q 027417          150 --GLFFMETSALDS----SNVTAAFQTVVTEI  175 (223)
Q Consensus       150 --~~~~~~~Sa~~~----~~i~~~~~~l~~~~  175 (223)
                        +.|++++||+.|    +++.++.+.|..++
T Consensus       161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  161 DGNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             CCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence              368999999999    66666666555444

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.28  E-value=7.4e-11  Score=87.05  Aligned_cols=62  Identities=24%  Similarity=0.236  Sum_probs=45.1

Q ss_pred             EEEEeCCCchh----hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q 027417           65 AQIWDTAGQER----FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKS  129 (223)
Q Consensus        65 ~~l~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~  129 (223)
                      +.|+||||...    ....+..++..+|++|+|.+.++..+-.....+.+.....   ...+++|.||+
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            77999999543    3356777889999999999999976656656666665444   34488889984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.28  E-value=2.7e-11  Score=98.86  Aligned_cols=162  Identities=15%  Similarity=0.166  Sum_probs=81.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcccee---EeEEEEEEECCEEEEEEEEeCCCchhhhchhHhh----
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGV---EFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY----   83 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~----   83 (223)
                      ....++|+|+|.+|+|||||||+|.|-.........+|+   +......... ..-.+.+||.||.....-....|    
T Consensus        32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred             hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence            356799999999999999999999874433222222222   2222222222 22247799999965433333333    


Q ss_pred             -hcCCCEEEEEEECCCHhhHHHHHHHH-HHHhhcCCCCCcEEEEEeCCCCC-------CCcccC----HHHHHHHHH---
Q 027417           84 -YRGAVGALLVYDISRRQTFDSIGRWL-NELHTHSDMNVVTILVGNKSDLK-------DAREVT----TAEGKALAE---  147 (223)
Q Consensus        84 -~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~Dl~-------~~~~~~----~~~~~~~~~---  147 (223)
                       +..-|.+|++.+-.    |....-++ ..+...   ++|+++|-||+|..       .++...    .+++++-+.   
T Consensus       111 ~~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  111 KFYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL  183 (376)
T ss_dssp             TGGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred             cccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence             45789888877743    33333332 333332   78999999999951       111222    223333322   


Q ss_pred             -HcCC---eEEEEccCCC--CCHHHHHHHHHHHHHHHHh
Q 027417          148 -AQGL---FFMETSALDS--SNVTAAFQTVVTEIYNILS  180 (223)
Q Consensus       148 -~~~~---~~~~~Sa~~~--~~i~~~~~~l~~~~~~~~~  180 (223)
                       ..++   ++|-+|+.+-  .++..+.+.|...+.....
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence             2233   4888998765  5577788877766655444

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd01882 BMS1 Bms1

Probab=99.26  E-value=1.7e-10  Score=89.18  Aligned_cols=140  Identities=20%  Similarity=0.205  Sum_probs=82.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      .....|+|+|.+|+|||||++.+.+...........|. +   .+ .......+.++||||.-  ..+ ....+.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEE
Confidence            44578999999999999999999864221111111121 1   11 11244567899999853  222 23457899999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCCcc-c--CHHHHHH-HHHH--cCCeEEEEccCCCCC
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVT-ILVGNKSDLKDARE-V--TTAEGKA-LAEA--QGLFFMETSALDSSN  163 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl~~~~~-~--~~~~~~~-~~~~--~~~~~~~~Sa~~~~~  163 (223)
                      +++|.+....... ...+..+...   +.|. ++|+||+|+.+... .  ...+.+. +...  .+.+++.+||+++-.
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            9999986443222 2233333222   4664 45999999864321 1  1112222 3221  246799999998843

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.26  E-value=3.9e-10  Score=86.96  Aligned_cols=169  Identities=17%  Similarity=0.194  Sum_probs=94.6

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------ccc-----eeEeEEEE----------------------
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-------STI-----GVEFQTQK----------------------   55 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-------~~~-----~~~~~~~~----------------------   55 (223)
                      ..+.+.-|+++|..|||||||+++|..........       |..     +.+...+.                      
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts   94 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS   94 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence            45667889999999999999999997642221111       100     00000000                      


Q ss_pred             --------------EEECCEEEEEEEEeCCCchh-h-----hchhHhhh--cCCCEEEEEEECCC---HhhHHHHHHHHH
Q 027417           56 --------------MDINGKEVKAQIWDTAGQER-F-----RAVTSAYY--RGAVGALLVYDISR---RQTFDSIGRWLN  110 (223)
Q Consensus        56 --------------~~~~~~~~~~~l~D~~G~~~-~-----~~~~~~~~--~~~d~~i~v~d~~~---~~s~~~~~~~~~  110 (223)
                                    +.-....+...++||||+-+ |     +.+....+  ...-++++++|...   +.+|=+-.-+.-
T Consensus        95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc  174 (366)
T KOG1532|consen   95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC  174 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence                          00011234567999999543 2     22333322  34556777777644   444433222222


Q ss_pred             HHhhcCCCCCcEEEEEeCCCCCCCcc-----cCH---HHHHH-------------HH-----HHcCCeEEEEccCCCCCH
Q 027417          111 ELHTHSDMNVVTILVGNKSDLKDARE-----VTT---AEGKA-------------LA-----EAQGLFFMETSALDSSNV  164 (223)
Q Consensus       111 ~i~~~~~~~~p~ivv~nK~Dl~~~~~-----~~~---~~~~~-------------~~-----~~~~~~~~~~Sa~~~~~i  164 (223)
                      .+.  ...+.|.|++.||+|+.....     ...   +++..             .+     -..++..+-||+.+|.|+
T Consensus       175 Sil--yktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~  252 (366)
T KOG1532|consen  175 SIL--YKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF  252 (366)
T ss_pred             HHH--HhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence            222  233799999999999875311     001   11111             00     022456788999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027417          165 TAAFQTVVTEIYNILS  180 (223)
Q Consensus       165 ~~~~~~l~~~~~~~~~  180 (223)
                      +++|..+-+.+-+...
T Consensus       253 ddf~~av~~~vdEy~~  268 (366)
T KOG1532|consen  253 DDFFTAVDESVDEYEE  268 (366)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999776655443

>cd01900 YchF YchF subfamily

Probab=99.25  E-value=1.1e-10  Score=92.31  Aligned_cols=81  Identities=15%  Similarity=0.119  Sum_probs=56.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCE---------------EEEEEEEeCCCchh------
Q 027417           17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQER------   75 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~------   75 (223)
                      |+|+|.|+||||||+++|++........+.++.+.....+.+.+.               ...+.++|+||...      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999998765444455455555555555443               23588999999432      


Q ss_pred             -hhchhHhhhcCCCEEEEEEECC
Q 027417           76 -FRAVTSAYYRGAVGALLVYDIS   97 (223)
Q Consensus        76 -~~~~~~~~~~~~d~~i~v~d~~   97 (223)
                       ........++++|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1122233457899999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.23  E-value=7.7e-12  Score=97.19  Aligned_cols=111  Identities=17%  Similarity=0.173  Sum_probs=58.0

Q ss_pred             EEEEEeCCCchhhhchhHhhh--------cCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417           64 KAQIWDTAGQERFRAVTSAYY--------RGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA  134 (223)
Q Consensus        64 ~~~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  134 (223)
                      ...++|||||.+....+....        ...-++++++|.....+ ...+..++..+......+.|.|.|.||+|+.+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            467999999888665555443        34557888888764322 222333333322222237999999999999862


Q ss_pred             c------------cc-------CHHHHHHHHHHc---C-C-eEEEEccCCCCCHHHHHHHHHHH
Q 027417          135 R------------EV-------TTAEGKALAEAQ---G-L-FFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       135 ~------------~~-------~~~~~~~~~~~~---~-~-~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      .            ..       .....+.++...   + . .++.+|+.+++|+.+++..+-+.
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            1            00       011122222222   3 3 58999999999999999887643

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=9.9e-10  Score=88.63  Aligned_cols=84  Identities=17%  Similarity=0.138  Sum_probs=62.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC----------------EEEEEEEEeCCC-----
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING----------------KEVKAQIWDTAG-----   72 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~D~~G-----   72 (223)
                      .+++.|+|-|+||||||.++++.........|+.+++.....+.+..                ....+.++|++|     
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999998776655556556655554443321                345688999998     


Q ss_pred             --chhhhchhHhhhcCCCEEEEEEECC
Q 027417           73 --QERFRAVTSAYYRGAVGALLVYDIS   97 (223)
Q Consensus        73 --~~~~~~~~~~~~~~~d~~i~v~d~~   97 (223)
                        .+..++....-++.+|+++.|+|..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence              2335556666779999999999976

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.20  E-value=2.2e-10  Score=91.15  Aligned_cols=139  Identities=17%  Similarity=0.243  Sum_probs=76.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc---h
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNS----------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA---V   79 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~   79 (223)
                      -.++|+|+|.+|+|||||++.|++.......          ..+...........-++..+.++++||||......   .
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            3689999999999999999999986544331          12223333344445577888999999999221100   0


Q ss_pred             h-----------Hhhh-------------cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           80 T-----------SAYY-------------RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        80 ~-----------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      +           ..++             ...|++|++++.+...--+.=...++.+..    ..++|-|..|+|.....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~----~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK----RVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT----TSEEEEEESTGGGS-HH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc----cccEEeEEecccccCHH
Confidence            0           0011             358899999998763211111234455443    47789999999976432


Q ss_pred             cc--CHHHHHHHHHHcCCeEEE
Q 027417          136 EV--TTAEGKALAEAQGLFFME  155 (223)
Q Consensus       136 ~~--~~~~~~~~~~~~~~~~~~  155 (223)
                      ++  ....+..-....++.+|.
T Consensus       159 el~~~k~~i~~~l~~~~I~~f~  180 (281)
T PF00735_consen  159 ELQAFKQRIREDLEENNIKIFD  180 (281)
T ss_dssp             HHHHHHHHHHHHHHHTT--S--
T ss_pred             HHHHHHHHHHHHHHHcCceeec
Confidence            22  123334445566776554

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=1.1e-10  Score=91.74  Aligned_cols=162  Identities=18%  Similarity=0.128  Sum_probs=104.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---cccee-------EeEEEE-------EEE----------CCEEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK---STIGV-------EFQTQK-------MDI----------NGKEVK   64 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~---~~~~~-------~~~~~~-------~~~----------~~~~~~   64 (223)
                      +..++|.++|+..-|||||..+|.+--....+.   ..++.       .++.+.       ...          ..-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            678999999999999999999998731111100   00000       000000       000          012345


Q ss_pred             EEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHH
Q 027417           65 AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEG  142 (223)
Q Consensus        65 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~  142 (223)
                      +.|.|.|||+-......+-..--|+.++|++.+.+-.-.+-+..+-.+.-..  -..+|++=||+|+....+  -+++++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            7899999999877766666667899999999998432222122122221111  356899999999986422  356667


Q ss_pred             HHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          143 KALAEA---QGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       143 ~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ++|.+.   .++|++++||..+.||+-+++.|...+
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence            777653   367899999999999999999887544

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.17  E-value=6.2e-10  Score=95.96  Aligned_cols=120  Identities=16%  Similarity=0.180  Sum_probs=71.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeE-eEEEEEEECCEEEEEEEEeCCCchhhh-------ch---h
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVE-FQTQKMDINGKEVKAQIWDTAGQERFR-------AV---T   80 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~---~   80 (223)
                      +..++|+|+|.+|+||||++|+|++...........+++ .........+  ..+.++||||.....       .+   .
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            456899999999999999999999876543332111222 2222222333  568899999954321       11   1


Q ss_pred             Hhhh--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCC--CCcEEEEEeCCCCCC
Q 027417           81 SAYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM--NVVTILVGNKSDLKD  133 (223)
Q Consensus        81 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~  133 (223)
                      ..++  ..+|++|+|..++.......-..+++.+......  -..+|||.|+.|...
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            1122  2589999999886432221112334444333221  266899999999775

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=6.4e-10  Score=91.05  Aligned_cols=157  Identities=16%  Similarity=0.057  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      -|+..|+-.-|||||+.++.+..-..... .--|++......+.......+.|+|+||++.+-......+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            47788999999999999999865432111 11244444444444444458899999999999888888889999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH---HcCCeEEEEccCCCCCHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE---AQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      |.++.-..+..+.. ..+. ... -...++|+||+|..++.++ .+..+.+..   ..+.++|.+|+++|.||+++.+.|
T Consensus        82 ~~deGl~~qtgEhL-~iLd-llg-i~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l  157 (447)
T COG3276          82 AADEGLMAQTGEHL-LILD-LLG-IKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKNEL  157 (447)
T ss_pred             eCccCcchhhHHHH-HHHH-hcC-CCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHHHH
Confidence            99764332222211 1111 111 2446899999998864322 222222222   234678999999999999999999


Q ss_pred             HHHHH
Q 027417          172 VTEIY  176 (223)
Q Consensus       172 ~~~~~  176 (223)
                      ...+-
T Consensus       158 ~~L~~  162 (447)
T COG3276         158 IDLLE  162 (447)
T ss_pred             HHhhh
Confidence            87663

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.15  E-value=7e-11  Score=92.95  Aligned_cols=160  Identities=20%  Similarity=0.180  Sum_probs=101.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch---------hhhchhHh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE---------RFRAVTSA   82 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~   82 (223)
                      ....-|.++|..++|||||+++|+.....+...-+.+.+......... .+-.+.+.||.|.-         .|......
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-sg~~vlltDTvGFisdLP~~LvaAF~ATLee  254 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-SGNFVLLTDTVGFISDLPIQLVAAFQATLEE  254 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-CCcEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence            344678999999999999999999766655444333333333333332 22356688999832         23333333


Q ss_pred             hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCC----CcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027417           83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN----VVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA  158 (223)
Q Consensus        83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~----~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (223)
                      . ..+|+++.|.|+++|.--+....-+..+....-..    ..++=|-||.|..+.. . .      .+.++  -+.+|+
T Consensus       255 V-aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~-e------~E~n~--~v~isa  323 (410)
T KOG0410|consen  255 V-AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-V-E------EEKNL--DVGISA  323 (410)
T ss_pred             H-hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-C-c------cccCC--cccccc
Confidence            3 67999999999999876554444444443332111    2245668888876531 1 1      11222  578899


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhhh
Q 027417          159 LDSSNVTAAFQTVVTEIYNILSRKV  183 (223)
Q Consensus       159 ~~~~~i~~~~~~l~~~~~~~~~~~~  183 (223)
                      ++|.|++++.+.+-.++.....-..
T Consensus       324 ltgdgl~el~~a~~~kv~~~t~~~e  348 (410)
T KOG0410|consen  324 LTGDGLEELLKAEETKVASETTVDE  348 (410)
T ss_pred             ccCccHHHHHHHHHHHhhhhheeee
Confidence            9999999999998777766555443

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=2.2e-10  Score=97.60  Aligned_cols=126  Identities=23%  Similarity=0.278  Sum_probs=90.3

Q ss_pred             CccccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcc---------------ceeEeE--EEEE---EECCE
Q 027417            2 AFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKST---------------IGVEFQ--TQKM---DINGK   61 (223)
Q Consensus         2 ~~~~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~---------------~~~~~~--~~~~---~~~~~   61 (223)
                      .|.....+-....++|.++|+-++|||+|+..|.....+.-+...               -|....  ..+.   ...+.
T Consensus       116 ~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~K  195 (971)
T KOG0468|consen  116 EYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGK  195 (971)
T ss_pred             HHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCc
Confidence            345556667788899999999999999999999875443221100               011111  1111   12456


Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL  131 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl  131 (223)
                      .+-++++|||||-.+..-..+.++.+|++++++|+.+.-.++.-+-....+    ....|+++|.||+|+
T Consensus       196 S~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai----q~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  196 SYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI----QNRLPIVVVINKVDR  261 (971)
T ss_pred             eeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH----hccCcEEEEEehhHH
Confidence            778999999999999999999999999999999999877766533333333    336899999999995

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.15  E-value=1.2e-09  Score=88.12  Aligned_cols=104  Identities=19%  Similarity=0.112  Sum_probs=64.6

Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAE  141 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  141 (223)
                      ++.+.|+||+|.....   ......+|.++++.+..   +.+.+......+.     ++|.++|+||+|+..........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence            4678899999854222   23456788888875443   3334333333332     47789999999987532211000


Q ss_pred             ------HHHHHH---HcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417          142 ------GKALAE---AQGLFFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       142 ------~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                            ...+..   .+..+++.+||+++.|+++++++|.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                  011111   12346999999999999999999987643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.14  E-value=4.7e-10  Score=84.40  Aligned_cols=145  Identities=22%  Similarity=0.318  Sum_probs=90.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh-----chhHhhhcCC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-----AVTSAYYRGA   87 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-----~~~~~~~~~~   87 (223)
                      .-||+++|.+|||||++--.+..+... ....++.+.++......+-|+ ..+.+||.+|++.+-     ......+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            468999999999999976555533221 122233233444444444433 568899999988542     2456688999


Q ss_pred             CEEEEEEECCCHhhHHHH---HHHHHHHhhcCCCCCcEEEEEeCCCCCCC--cccCHHHHHH----HHHHcCCeEEEEcc
Q 027417           88 VGALLVYDISRRQTFDSI---GRWLNELHTHSDMNVVTILVGNKSDLKDA--REVTTAEGKA----LAEAQGLFFMETSA  158 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~----~~~~~~~~~~~~Sa  158 (223)
                      +++|++||++..+--..+   ++.++.+.++.+ ...+.+..+|+|+...  ++...++...    +....++.+|++|.
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            999999999987543333   444455555544 5667788999999753  2222333222    22333455777776


Q ss_pred             CC
Q 027417          159 LD  160 (223)
Q Consensus       159 ~~  160 (223)
                      .+
T Consensus       162 wD  163 (295)
T KOG3886|consen  162 WD  163 (295)
T ss_pred             hh
Confidence            54

>smart00053 DYNc Dynamin, GTPase

Probab=99.14  E-value=1.1e-09  Score=84.95  Aligned_cols=68  Identities=18%  Similarity=0.129  Sum_probs=42.5

Q ss_pred             EEEEEEeCCCchh-------------hhchhHhhhc-CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 027417           63 VKAQIWDTAGQER-------------FRAVTSAYYR-GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK  128 (223)
Q Consensus        63 ~~~~l~D~~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK  128 (223)
                      ..++++|+||...             ...+...+++ ..+++++|+|....-.-.......+.+   ...+.++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l---d~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV---DPQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH---HHcCCcEEEEEEC
Confidence            4588999999632             1223455666 456899999886532221212222222   2336899999999


Q ss_pred             CCCCC
Q 027417          129 SDLKD  133 (223)
Q Consensus       129 ~Dl~~  133 (223)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99875

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.14  E-value=1.8e-09  Score=87.13  Aligned_cols=119  Identities=19%  Similarity=0.230  Sum_probs=81.6

Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhH-------HHHH---HHHHHH-hhcCCCCCcEEEEEeCCC
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTF-------DSIG---RWLNEL-HTHSDMNVVTILVGNKSD  130 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~---~~~~~i-~~~~~~~~p~ivv~nK~D  130 (223)
                      ...+.++|++|+...+.-|.+++.+++++|||+++++-+..       +.+.   ..+..+ ...+=.+.++|+++||.|
T Consensus       194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D  273 (354)
T KOG0082|consen  194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD  273 (354)
T ss_pred             CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence            36788999999999999999999999999999999873321       1122   223333 222334689999999999


Q ss_pred             CCCC---------------cccCHHHHHHHHH--------H--cCCeEEEEccCCCCCHHHHHHHHHHHHHHHHh
Q 027417          131 LKDA---------------REVTTAEGKALAE--------A--QGLFFMETSALDSSNVTAAFQTVVTEIYNILS  180 (223)
Q Consensus       131 l~~~---------------~~~~~~~~~~~~~--------~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  180 (223)
                      +-++               -....+++..+..        .  ..+.+..+.|.+-.+|+.+|..+...+...-.
T Consensus       274 LFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl  348 (354)
T KOG0082|consen  274 LFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL  348 (354)
T ss_pred             HHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence            7431               0123444444321        1  12345667899999999999999887765543

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=7.6e-10  Score=97.35  Aligned_cols=120  Identities=19%  Similarity=0.181  Sum_probs=88.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC---C-------------ccceeEeEEEEEEECCE-EEEEEEEeCCCc
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS---K-------------STIGVEFQTQKMDINGK-EVKAQIWDTAGQ   73 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~---~-------------~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~   73 (223)
                      .+...+|.|+|+.++|||||..+|+...-....   .             ..-|.+........... .+.++++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            567799999999999999999998753211110   0             11134444444444444 488999999999


Q ss_pred             hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417           74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA  134 (223)
Q Consensus        74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  134 (223)
                      -.|..-....++-+|+.|+|+|+...-..+.-.-|.+...    .++|.++++||+|....
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRLGA  143 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECcccccc
Confidence            9999999999999999999999998655555455554433    37999999999998653

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.09  E-value=2.4e-10  Score=88.12  Aligned_cols=153  Identities=20%  Similarity=0.194  Sum_probs=85.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCC-----------CCCCCCccce---------------eEeEEEEEEECC-----
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDE-----------FYPNSKSTIG---------------VEFQTQKMDING-----   60 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~-----------~~~~~~~~~~---------------~~~~~~~~~~~~-----   60 (223)
                      ...+.|.|.|+||+|||||+++|...-           +++++..+-|               ...+.+.+-..+     
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            456899999999999999999885421           1111111111               012222222111     


Q ss_pred             -------------EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 027417           61 -------------KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN  127 (223)
Q Consensus        61 -------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n  127 (223)
                                   .++.+.|++|.|.-...   .....-+|.+++|....-.+..+.+..-+-+        +.=++|+|
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vVN  175 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVVN  175 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEEE
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEEe
Confidence                         13557788988743322   2234569999999998776655544332222        23489999


Q ss_pred             CCCCCCCcccCHHHHHHHHH-------HcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417          128 KSDLKDAREVTTAEGKALAE-------AQGLFFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       128 K~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      |+|+..+... ..+.+....       .+..|++.+||.++.|++++++.|.+..-
T Consensus       176 KaD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  176 KADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             --SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            9996543222 222222222       12357999999999999999999976443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.05  E-value=1.7e-09  Score=79.67  Aligned_cols=79  Identities=13%  Similarity=0.042  Sum_probs=52.9

Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCeEEEEccCCCCCHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ--GLFFMETSALDSSNVTA  166 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~  166 (223)
                      .-|+|+|++..+-...  +-...+.      ..=++|.||.|+...-..+.+...+-+++.  +.+++++|+++|+|+++
T Consensus       120 ~~v~VidvteGe~~P~--K~gP~i~------~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~  191 (202)
T COG0378         120 LRVVVIDVTEGEDIPR--KGGPGIF------KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDE  191 (202)
T ss_pred             eEEEEEECCCCCCCcc--cCCCcee------EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHH
Confidence            6788888887532110  0000111      124899999999876555555555555544  57899999999999999


Q ss_pred             HHHHHHHHH
Q 027417          167 AFQTVVTEI  175 (223)
Q Consensus       167 ~~~~l~~~~  175 (223)
                      +++++...+
T Consensus       192 ~~~~i~~~~  200 (202)
T COG0378         192 WLRFIEPQA  200 (202)
T ss_pred             HHHHHHhhc
Confidence            999987643

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.05  E-value=4.1e-09  Score=82.53  Aligned_cols=154  Identities=19%  Similarity=0.155  Sum_probs=92.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCC-----------CCCCCCccceeE---------------eEEEEEEE-------
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDE-----------FYPNSKSTIGVE---------------FQTQKMDI-------   58 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~-----------~~~~~~~~~~~~---------------~~~~~~~~-------   58 (223)
                      .+...|.|.|.||+|||||+..|....           +++++..|-|.-               .+...+..       
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl  128 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL  128 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence            445789999999999999999885421           123333222210               11111111       


Q ss_pred             -----------CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 027417           59 -----------NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN  127 (223)
Q Consensus        59 -----------~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n  127 (223)
                                 +..++.+.|++|.|.-....   ....-+|.++++.-..-.+..+.++.-+-++        -=|+|+|
T Consensus       129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vIN  197 (323)
T COG1703         129 SRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVIN  197 (323)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEe
Confidence                       12345688899988543322   2335689988888777666655544433332        2389999


Q ss_pred             CCCCCCCcccCHHHH--HHHH----H--HcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417          128 KSDLKDAREVTTAEG--KALA----E--AQGLFFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       128 K~Dl~~~~~~~~~~~--~~~~----~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      |.|.........+..  ..+.    .  .+..+++.+||.+|+|++++++.+..+..
T Consensus       198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            999665322111111  1111    1  12346999999999999999999976653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.03  E-value=1.3e-09  Score=91.13  Aligned_cols=167  Identities=19%  Similarity=0.326  Sum_probs=124.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .-..+|+.|+|..++|||+|+++++.+.+.....+- + ..+...+.+.+....+.+.|.+|.     ....+-..+|++
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e-~-~~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdav   99 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-G-GRFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAV   99 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCCc-C-ccceeeEEeeccceEeeeecccCC-----chhhhhhhccce
Confidence            345699999999999999999999988776544433 2 234555667777777888888873     233445679999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCC--CcccCHHHHHHHHH-HcCCeEEEEccCCCCCHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKD--AREVTTAEGKALAE-AQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~  166 (223)
                      ||||.+.+..+|+.+..+...+..+ ....+|.++++++--...  .+.+...+++.++. ...+.+|++++..|.++..
T Consensus       100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r  179 (749)
T KOG0705|consen  100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER  179 (749)
T ss_pred             EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence            9999999999999998887776544 344688888887654332  24455566665544 4467799999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 027417          167 AFQTVVTEIYNILSRKVM  184 (223)
Q Consensus       167 ~~~~l~~~~~~~~~~~~~  184 (223)
                      +|..++.++.....+...
T Consensus       180 vf~~~~~k~i~~~~~qq~  197 (749)
T KOG0705|consen  180 VFQEVAQKIVQLRKYQQL  197 (749)
T ss_pred             HHHHHHHHHHHHHhhhhc
Confidence            999999888777655553

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=1.1e-08  Score=79.84  Aligned_cols=146  Identities=20%  Similarity=0.182  Sum_probs=97.4

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCC------CCCC--------CccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEF------YPNS--------KSTIGVEFQTQKMDINGKEVKAQIWDTAG   72 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   72 (223)
                      ...+....+||..+|+.+-|||||..+++.--.      ...+        ...-|+++....+.+.-.....-..|+||
T Consensus         5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPG   84 (394)
T COG0050           5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPG   84 (394)
T ss_pred             hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCC
Confidence            345667789999999999999999888754110      0000        11225555555555543334455899999


Q ss_pred             chhhhchhHhhhcCCCEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcc---cCHHHHHHH
Q 027417           73 QERFRAVTSAYYRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDARE---VTTAEGKAL  145 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~  145 (223)
                      +..|-.+...-..+.|+.|+|+++++   |++.+.       +.-...-+.| +++++||+|+.+..+   .-..+.+++
T Consensus        85 HaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEH-------iLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreL  157 (394)
T COG0050          85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREH-------ILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVREL  157 (394)
T ss_pred             hHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhh-------hhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence            99998888888889999999999998   344332       2112222565 556699999987433   345667888


Q ss_pred             HHHcCCe-----EEEEccC
Q 027417          146 AEAQGLF-----FMETSAL  159 (223)
Q Consensus       146 ~~~~~~~-----~~~~Sa~  159 (223)
                      ...++.+     ++.-||.
T Consensus       158 Ls~y~f~gd~~Pii~gSal  176 (394)
T COG0050         158 LSEYGFPGDDTPIIRGSAL  176 (394)
T ss_pred             HHHcCCCCCCcceeechhh
Confidence            8887654     6666764

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.98  E-value=1e-08  Score=82.46  Aligned_cols=117  Identities=16%  Similarity=0.282  Sum_probs=74.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCccceeEeEEEEEEECCEEEEEEEEeCCCchhh---hc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPN----------SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF---RA   78 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~~   78 (223)
                      ...++|+++|+.|+|||||+|.|++......          ..+++........+.-++..+.++++||||...+   ..
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            5579999999999999999999998633322          1233334444444555677888999999992221   11


Q ss_pred             hh-----------Hhhh--------------cCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           79 VT-----------SAYY--------------RGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        79 ~~-----------~~~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                      .|           ..++              ..++++++.+..+... +..+ ...+..+...    +.+|-|..|+|..
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~~----vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSKR----VNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhcc----cCeeeeeeccccC
Confidence            11           1111              3578899998877643 2222 3345555443    5577778899975


Q ss_pred             C
Q 027417          133 D  133 (223)
Q Consensus       133 ~  133 (223)
                      .
T Consensus       176 T  176 (373)
T COG5019         176 T  176 (373)
T ss_pred             C
Confidence            3

>cd01859 MJ1464 MJ1464

Probab=98.94  E-value=4.1e-09  Score=76.86  Aligned_cols=95  Identities=16%  Similarity=0.135  Sum_probs=65.2

Q ss_pred             hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q 027417           76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFME  155 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (223)
                      ++.+..+.++++|++|+|+|++++..... ..+...+.   ..++|+++|+||+|+......  .....+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence            45677888889999999999987643222 11222221   225899999999998642211  1111333445678999


Q ss_pred             EccCCCCCHHHHHHHHHHHHH
Q 027417          156 TSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       156 ~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      +||+++.|++++++.|.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999987653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.93  E-value=3.8e-09  Score=83.60  Aligned_cols=56  Identities=16%  Similarity=0.099  Sum_probs=40.1

Q ss_pred             CCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHH
Q 027417          119 NVVTILVGNKSDLKDAREVTTAEGKALAEAQ--GLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       119 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      ..+-++|+||+|+........+...+..+..  .++++.+|+++|+|+++++++|..+
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3556999999999753222333333333333  5779999999999999999999763

>cd01855 YqeH YqeH

Probab=98.93  E-value=7.5e-09  Score=78.03  Aligned_cols=93  Identities=22%  Similarity=0.111  Sum_probs=65.1

Q ss_pred             hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcC
Q 027417           76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQG  150 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~  150 (223)
                      +...+..+++.+|++++|+|++++..     .|...+... ..+.|+++|+||+|+... ....+....+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcC
Confidence            47778888999999999999987542     122222112 236899999999998753 22333333333     2333


Q ss_pred             C---eEEEEccCCCCCHHHHHHHHHHHH
Q 027417          151 L---FFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       151 ~---~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      .   .++.+||+++.|++++++.|...+
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3   589999999999999999998765

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.92  E-value=9.9e-09  Score=78.70  Aligned_cols=96  Identities=19%  Similarity=0.156  Sum_probs=64.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhhcCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYRGA   87 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~   87 (223)
                      -+|.++|-|++||||++..+.+...+......+..+.......++  ...+++.|.||.-+       ......+..+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~--gaKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYK--GAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecc--ccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            489999999999999999999865443333332333333333333  36788999999422       233455667889


Q ss_pred             CEEEEEEECCCHhhHHHH-HHHHHHH
Q 027417           88 VGALLVYDISRRQTFDSI-GRWLNEL  112 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~-~~~~~~i  112 (223)
                      +.+++|+|+..|-+...+ +..++.+
T Consensus       138 nli~~vld~~kp~~hk~~ie~eleg~  163 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIEKELEGF  163 (358)
T ss_pred             cEEEEEeeccCcccHHHHHHHhhhcc
Confidence            999999999887665443 3344443

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=8.7e-09  Score=84.34  Aligned_cols=133  Identities=16%  Similarity=0.173  Sum_probs=88.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc--CCCC-------------CCCC-----ccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR--DEFY-------------PNSK-----STIGVEFQTQKMDINGKEVKAQIWDTAG   72 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~--~~~~-------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~G   72 (223)
                      .....+|+-+|.+|||||-..|+-  +.+.             ..++     ..-|+......+.++.....+.|.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            345678999999999999988752  2111             0000     1224555556666666678889999999


Q ss_pred             chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 027417           73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL  151 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  151 (223)
                      |+.+..-+=..+..+|..|+|+|+...-.-.. .++++..+   -.+.|++-++||.|....  -..+...++-+.+++
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcr---lR~iPI~TFiNKlDR~~r--dP~ELLdEiE~~L~i  163 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCR---LRDIPIFTFINKLDREGR--DPLELLDEIEEELGI  163 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHh---hcCCceEEEeeccccccC--ChHHHHHHHHHHhCc
Confidence            99988877777888999999999976422111 22233322   237999999999997642  234444455555544

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.90  E-value=1.6e-08  Score=94.83  Aligned_cols=113  Identities=21%  Similarity=0.244  Sum_probs=74.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCC----C--ccceeEeEEEEEEECCEEEEEEEEeCCCc----h----hhhchhHh
Q 027417           17 VVLIGDSAVGKSNLLARFARDEFYPNS----K--STIGVEFQTQKMDINGKEVKAQIWDTAGQ----E----RFRAVTSA   82 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----~----~~~~~~~~   82 (223)
                      -+|+|++|+||||++..- +..++-..    .  ...+.+ ..+.+.+.++.+   ++||+|.    +    .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t-~~c~wwf~~~av---liDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGT-RNCDWWFTDEAV---LIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCC-cccceEecCCEE---EEcCCCccccCCCcccccHHHHHH
Confidence            579999999999999866 44443211    1  111212 234455566555   9999992    1    12233444


Q ss_pred             hh---------cCCCEEEEEEECCCHh-----h----HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417           83 YY---------RGAVGALLVYDISRRQ-----T----FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA  134 (223)
Q Consensus        83 ~~---------~~~d~~i~v~d~~~~~-----s----~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  134 (223)
                      ++         +..|++|+++|+.+..     .    -..++..+.++........||.|+.||+|+...
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            43         4699999999997632     1    134566777777777779999999999998754

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.90  E-value=1.7e-08  Score=82.78  Aligned_cols=91  Identities=16%  Similarity=0.148  Sum_probs=67.3

Q ss_pred             hhHhhhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEc
Q 027417           79 VTSAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (223)
                      +....+.++|.+++|+|+.++. ....+..|+..+..   .++|+++|+||+|+....+.  +...+....++.+++.+|
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS  156 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS  156 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence            3344578999999999999875 44466777766532   36899999999999743221  222233356788899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 027417          158 ALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       158 a~~~~~i~~~~~~l~~~  174 (223)
                      |+++.|++++++.|...
T Consensus       157 A~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        157 VETGIGLEALLEQLRNK  173 (352)
T ss_pred             cCCCCCHHHHhhhhccc
Confidence            99999999999988654

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=4.3e-08  Score=74.44  Aligned_cols=151  Identities=17%  Similarity=0.218  Sum_probs=86.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCC---------CCCccceeEeEEEEEEECCEEEEEEEEeCCCchh---hhchhH
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYP---------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER---FRAVTS   81 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---~~~~~~   81 (223)
                      .++|+++|.+|.|||||++.|.......         ....|+........+.-++....++++||||...   ....|.
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            5999999999999999999987643322         1112222333333344466777889999999221   111111


Q ss_pred             -----------hhh--------------cCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC--
Q 027417           82 -----------AYY--------------RGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD--  133 (223)
Q Consensus        82 -----------~~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~--  133 (223)
                                 .++              ..++++++.+..+.. ++..+ ..+++.+.+.    ..+|-|.-|+|-..  
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v----vNvvPVIakaDtlTle  200 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV----VNVVPVIAKADTLTLE  200 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh----heeeeeEeecccccHH
Confidence                       111              246677777777653 33333 2344444433    44676777999542  


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417          134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      ++..-.+.++.-...+++.+++-.+.+-..=+..++
T Consensus       201 Er~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN  236 (336)
T KOG1547|consen  201 ERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN  236 (336)
T ss_pred             HHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence            233334445555677888877765554433333333

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=3.8e-08  Score=79.66  Aligned_cols=145  Identities=19%  Similarity=0.267  Sum_probs=87.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCccceeEeEEEEEEECCEEEEEEEEeCCCchhh------
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPN---------SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF------   76 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------   76 (223)
                      .-.++++++|+.|.|||||+|.|+...+...         ...+.........+.-++-.+.++++||||....      
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            3459999999999999999999988644332         1123333334444444677888999999992211      


Q ss_pred             -h-------chhHhhh-------------cCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417           77 -R-------AVTSAYY-------------RGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA  134 (223)
Q Consensus        77 -~-------~~~~~~~-------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  134 (223)
                       .       .....++             ..++++++.+..+... +..+ ...++.+..    .+.+|-|..|+|....
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~~----~vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLSK----KVNLIPVIAKADTLTK  173 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHhc----cccccceeeccccCCH
Confidence             0       0111111             2688899999887642 2222 233444433    4667878889997654


Q ss_pred             ccc--CHHHHHHHHHHcCCeEEEEccCCC
Q 027417          135 REV--TTAEGKALAEAQGLFFMETSALDS  161 (223)
Q Consensus       135 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~  161 (223)
                      .++  ....+.......++++|....-..
T Consensus       174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  174 DELNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            322  233345556677888666554443

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=3.5e-08  Score=75.02  Aligned_cols=171  Identities=18%  Similarity=0.216  Sum_probs=101.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc---hhHhhhcCCCEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA---VTSAYYRGAVGA   90 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~~   90 (223)
                      ..+|+++|...+||||+-..... +..+...-....+.....-.+.+.-+.+.+||.||+-.+-.   -....++.+.++
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFh-kMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             CceEEEEeecccCcchhhheeee-ccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            46799999999999997765543 44443322222222222223344567899999999765422   246678999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCc-ccC-----HHHHHHHHHHc---CC--eEEEEc
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTH--SDMNVVTILVGNKSDLKDAR-EVT-----TAEGKALAEAQ---GL--FFMETS  157 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~Dl~~~~-~~~-----~~~~~~~~~~~---~~--~~~~~S  157 (223)
                      |+|+|.-+. -.+.+..+...+.+.  .+.++.+=+...|.|...+. .+.     .+.+.+-....   ++  .|+-+|
T Consensus       106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS  184 (347)
T KOG3887|consen  106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS  184 (347)
T ss_pred             EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence            999998653 233333333333222  34467777889999965421 111     11111111112   22  344444


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhhhhhhH
Q 027417          158 ALDSSNVTAAFQTVVTEIYNILSRKVMISQ  187 (223)
Q Consensus       158 a~~~~~i~~~~~~l~~~~~~~~~~~~~~~~  187 (223)
                       .-...|-+.|..+++++..+++--++...
T Consensus       185 -IyDHSIfEAFSkvVQkLipqLptLEnlLn  213 (347)
T KOG3887|consen  185 -IYDHSIFEAFSKVVQKLIPQLPTLENLLN  213 (347)
T ss_pred             -ecchHHHHHHHHHHHHHhhhchhHHHHHH
Confidence             45578999999999999888776554433

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=3.2e-08  Score=79.50  Aligned_cols=127  Identities=20%  Similarity=0.249  Sum_probs=81.4

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEE------CCEEE----------------
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDI------NGKEV----------------   63 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~----------------   63 (223)
                      ...+-....-|+++|+-+.||||||+.|+...++.... +-.++++....+.-      +|+..                
T Consensus        51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~  130 (532)
T KOG1954|consen   51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN  130 (532)
T ss_pred             cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence            33445667889999999999999999999887763222 11122222222211      11111                


Q ss_pred             -----------------EEEEEeCCCchh-----------hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhc
Q 027417           64 -----------------KAQIWDTAGQER-----------FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTH  115 (223)
Q Consensus        64 -----------------~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  115 (223)
                                       .++++||||.-+           |......+...+|.+|++||....+--++....+..++.+
T Consensus       131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~  210 (532)
T KOG1954|consen  131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH  210 (532)
T ss_pred             HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence                             288999999322           3445667788999999999987654434444444444443


Q ss_pred             CCCCCcEEEEEeCCCCCCCcc
Q 027417          116 SDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus       116 ~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                         .-.+-||+||+|..+..+
T Consensus       211 ---EdkiRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  211 ---EDKIRVVLNKADQVDTQQ  228 (532)
T ss_pred             ---cceeEEEeccccccCHHH
Confidence               345778999999886433

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.85  E-value=7.5e-09  Score=74.24  Aligned_cols=54  Identities=24%  Similarity=0.279  Sum_probs=40.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ   73 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   73 (223)
                      +++++|.+|+|||||+|++.+........ ..+.+.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999876643222 234555555555554   4679999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.84  E-value=1.7e-08  Score=80.93  Aligned_cols=88  Identities=16%  Similarity=0.118  Sum_probs=68.5

Q ss_pred             HhhhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027417           81 SAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL  159 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (223)
                      ...+.++|.+++|+|+.++. ++..+..|+..+...   ++|+++|+||+|+....+  ...........+.+++.+||+
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence            34578999999999999988 888888888776542   689999999999975311  122233345578899999999


Q ss_pred             CCCCHHHHHHHHHH
Q 027417          160 DSSNVTAAFQTVVT  173 (223)
Q Consensus       160 ~~~~i~~~~~~l~~  173 (223)
                      ++.|+++++..|..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.83  E-value=6e-08  Score=81.15  Aligned_cols=112  Identities=19%  Similarity=0.199  Sum_probs=75.5

Q ss_pred             EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh----------hH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ----------TF-DSIGRWLNELHTHSDMNVVTILVGNKSDL  131 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl  131 (223)
                      ..+.++|++|+...+.-|.+++.+++++|+|+++++-+          .+ +++.-|-..+....-.+.|+||+.||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            56789999999999999999999999999999987521          12 22233333333333347999999999995


Q ss_pred             CC-----C------------c-ccCHHHHHHHHHH------------cCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417          132 KD-----A------------R-EVTTAEGKALAEA------------QGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       132 ~~-----~------------~-~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      -+     .            . .-..+.+..+...            ..+.+..++|.+..++..+|+.+...
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            22     0            0 1234555554321            12245678999999999999988753

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.81  E-value=1.4e-08  Score=75.10  Aligned_cols=58  Identities=26%  Similarity=0.362  Sum_probs=41.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ   73 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   73 (223)
                      ...++|+++|.||+|||||+|+|.+........ ..|++.....+....   .+.++||||.
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~~~~---~~~l~DtPGi  172 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVHLDK---KVKLLDSPGI  172 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEEeCC---CEEEEECcCC
Confidence            445899999999999999999999876543322 235555555554443   4679999983

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.81  E-value=1.8e-08  Score=73.60  Aligned_cols=57  Identities=19%  Similarity=0.209  Sum_probs=39.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ   73 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   73 (223)
                      ..++|+++|.||+|||||+|+|.+........ ..|.+.....+..+.   .+.++||||.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYITLMK---RIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEEcCC---CEEEEECcCC
Confidence            35789999999999999999999865533322 235555444444433   2559999983

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.79  E-value=2.6e-08  Score=80.22  Aligned_cols=87  Identities=24%  Similarity=0.193  Sum_probs=65.6

Q ss_pred             hhcCCCEEEEEEECCCHhhHHH-HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027417           83 YYRGAVGALLVYDISRRQTFDS-IGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS  161 (223)
Q Consensus        83 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (223)
                      ...++|++++|+|+.++.+... +..|+..+..   .++|+++|+||+|+.+... ..++.....+..+.+++.+||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3589999999999998876544 4677766543   3689999999999963222 122334445667889999999999


Q ss_pred             CCHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVT  173 (223)
Q Consensus       162 ~~i~~~~~~l~~  173 (223)
                      .|++++++.+..
T Consensus       153 ~gi~~L~~~l~g  164 (298)
T PRK00098        153 EGLDELKPLLAG  164 (298)
T ss_pred             ccHHHHHhhccC
Confidence            999999988753

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.78  E-value=1.6e-07  Score=75.95  Aligned_cols=158  Identities=18%  Similarity=0.133  Sum_probs=97.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcc--------------ceeEeEEEEEEECCE---------------
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKST--------------IGVEFQTQKMDINGK---------------   61 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~---------------   61 (223)
                      .+..+.|.+.|+.+.|||||+-.|..+..+...-.+              .+.+.....+-+++.               
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            455789999999999999999998776554322211              011122222222211               


Q ss_pred             ------EEEEEEEeCCCchhhhchhHh--hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           62 ------EVKAQIWDTAGQERFRAVTSA--YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        62 ------~~~~~l~D~~G~~~~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                            ..-+.|+||.|++.|.+....  +-...|-.++++.+++.-+.-.    .+.+.-....+.|+++++||+|+..
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t----kEHLgi~~a~~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT----KEHLGIALAMELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh----hHhhhhhhhhcCCEEEEEEecccCc
Confidence                  123679999999998765544  4467999999999998644222    1222222233799999999999865


Q ss_pred             Cccc--CHHHHHH----------------------HHHHcC---CeEEEEccCCCCCHHHHHHHHH
Q 027417          134 AREV--TTAEGKA----------------------LAEAQG---LFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus       134 ~~~~--~~~~~~~----------------------~~~~~~---~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ...+  ..+++..                      .+.+.+   +|+|.+|+.+|+|++-+.+.+.
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~  335 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence            2111  0111111                      111122   4789999999999986665443

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=1.6e-08  Score=81.42  Aligned_cols=161  Identities=18%  Similarity=0.219  Sum_probs=96.8

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----------------------ccceeEeEEEEEEECC---
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-----------------------STIGVEFQTQKMDING---   60 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~---   60 (223)
                      |++..-..++|+++|...+|||||+-.|+.+..+....                       ...|++-....+.+.+   
T Consensus       160 Pd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t  239 (591)
T KOG1143|consen  160 PDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT  239 (591)
T ss_pred             CCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence            34445567999999999999999999888765543221                       0111111111111111   


Q ss_pred             -------EEEEEEEEeCCCchhhhchhHhhhc--CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027417           61 -------KEVKAQIWDTAGQERFRAVTSAYYR--GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL  131 (223)
Q Consensus        61 -------~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl  131 (223)
                             ..--++++|.+|+..|.......+.  ..|...++++++..-.+..-+ .+-.+   ...++|++++++|+|+
T Consensus       240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrE-HLgl~---~AL~iPfFvlvtK~Dl  315 (591)
T KOG1143|consen  240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTRE-HLGLI---AALNIPFFVLVTKMDL  315 (591)
T ss_pred             HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHH-HHHHH---HHhCCCeEEEEEeecc
Confidence                   1223789999999999877665443  477788888887754332211 11112   2237999999999998


Q ss_pred             CCCc------------------------ccCHHHHHHHHH----HcCCeEEEEccCCCCCHHHHHHHH
Q 027417          132 KDAR------------------------EVTTAEGKALAE----AQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus       132 ~~~~------------------------~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      ....                        --+..++-..+.    ..-.|+|.+|+.+|+|++.+...|
T Consensus       316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence            6520                        011122222222    222468999999999988765444

>PRK12288 GTPase RsgA; Reviewed

Probab=98.77  E-value=6.3e-08  Score=79.37  Aligned_cols=88  Identities=16%  Similarity=0.157  Sum_probs=67.5

Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCeEEEEccCCCC
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV-TTAEGKALAEAQGLFFMETSALDSS  162 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (223)
                      ..++|.+++|+++....++..+..|+..+..   .++|+++|+||+|+....+. ...+........+.+++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            3679999999999888889999999875542   36899999999999753211 1122233345678899999999999


Q ss_pred             CHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTE  174 (223)
Q Consensus       163 ~i~~~~~~l~~~  174 (223)
                      |++++++.|...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999988653

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.72  E-value=1.6e-06  Score=62.14  Aligned_cols=147  Identities=16%  Similarity=0.207  Sum_probs=82.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCC-C------------------
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA-G------------------   72 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-G------------------   72 (223)
                      ...++|.|.|+|||||||++..+...--...+.-   .-+....+.-.+...-|.+.|+. |                  
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv---gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY   79 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKV---GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY   79 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCcee---eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence            3568999999999999999988875322222111   12334444556666777777776 3                  


Q ss_pred             ---chhhh----chhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 027417           73 ---QERFR----AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL  145 (223)
Q Consensus        73 ---~~~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  145 (223)
                         .+.+.    ......++.+|+  +++|--.+..+.. ..+...+....+.+.|++.++.+.+..       -..+++
T Consensus        80 ~V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElks-~~f~~~ve~vl~~~kpliatlHrrsr~-------P~v~~i  149 (179)
T COG1618          80 GVNVEGLEEIAIPALRRALEEADV--IIIDEIGPMELKS-KKFREAVEEVLKSGKPLIATLHRRSRH-------PLVQRI  149 (179)
T ss_pred             EeeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhcc-HHHHHHHHHHhcCCCcEEEEEecccCC-------hHHHHh
Confidence               11111    122233456774  4667665533322 344555555555678888888766532       112223


Q ss_pred             HHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       146 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ....++.+|    .+.+|-+.+++.+++.+
T Consensus       150 k~~~~v~v~----lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         150 KKLGGVYVF----LTPENRNRILNEILSVL  175 (179)
T ss_pred             hhcCCEEEE----EccchhhHHHHHHHHHh
Confidence            222334444    55556667777777654

>TIGR00092 GTP-binding protein YchF

Probab=98.71  E-value=7.2e-08  Score=78.92  Aligned_cols=83  Identities=17%  Similarity=0.027  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCccceeEeEEEEEEECCE---------------EEEEEEEeCCCchh---
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQER---   75 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~---   75 (223)
                      +++.|+|.|++|||||+++|++... .....|..+.......+.+.+.               ...+.+.|+||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998876 5544455455555555555442               24678999999433   


Q ss_pred             ----hhchhHhhhcCCCEEEEEEECC
Q 027417           76 ----FRAVTSAYYRGAVGALLVYDIS   97 (223)
Q Consensus        76 ----~~~~~~~~~~~~d~~i~v~d~~   97 (223)
                          ........++++|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                3334555679999999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.69  E-value=9.9e-08  Score=78.87  Aligned_cols=94  Identities=22%  Similarity=0.257  Sum_probs=68.9

Q ss_pred             chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHH
Q 027417           73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK----ALAEA  148 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~  148 (223)
                      .+.+..+...+.+.++++++|+|+.+..     ..|...+..... +.|+++|+||+|+.. +....+...    ++++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence            4678888888889999999999997643     234444443332 579999999999875 233333433    34566


Q ss_pred             cCC---eEEEEccCCCCCHHHHHHHHHH
Q 027417          149 QGL---FFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus       149 ~~~---~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      .++   .++.+||+++.|++++++.|.+
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~  150 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKK  150 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence            676   3899999999999999999865

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.68  E-value=3.8e-08  Score=78.23  Aligned_cols=88  Identities=13%  Similarity=0.143  Sum_probs=66.1

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC---------------EEEEEEEEeCCCch
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING---------------KEVKAQIWDTAGQE   74 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~D~~G~~   74 (223)
                      +....+++.|+|-|+||||||+|+|+.....+...|..+++.....+.+..               ....++++|++|..
T Consensus        16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv   95 (391)
T KOG1491|consen   16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV   95 (391)
T ss_pred             CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence            445678999999999999999999999887777677766666655554432               34568999999832


Q ss_pred             -------hhhchhHhhhcCCCEEEEEEECC
Q 027417           75 -------RFRAVTSAYYRGAVGALLVYDIS   97 (223)
Q Consensus        75 -------~~~~~~~~~~~~~d~~i~v~d~~   97 (223)
                             ..++-....++++|+++.|+++.
T Consensus        96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cCcccCcCchHHHHHhhhhccceeEEEEec
Confidence                   23444455678999999998865

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=6.5e-07  Score=77.18  Aligned_cols=119  Identities=15%  Similarity=0.191  Sum_probs=72.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEe----------------------------------------
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEF----------------------------------------   51 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~----------------------------------------   51 (223)
                      ....||+|.|..++||||++|+++.....+.....++.-+                                        
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            4568999999999999999999987554433221111000                                        


Q ss_pred             ---EEEEEEECCE-----EEEEEEEeCCCchh---hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCC
Q 027417           52 ---QTQKMDINGK-----EVKAQIWDTAGQER---FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV  120 (223)
Q Consensus        52 ---~~~~~~~~~~-----~~~~~l~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  120 (223)
                         ....+..+..     .-.+.++|.||.+.   ...-.......+|++|+|....+..+..+...+.    .....++
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~----~vs~~Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFH----KVSEEKP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHH----HhhccCC
Confidence               0011111111     11366889999543   3333344557899999999999877665533332    2233356


Q ss_pred             cEEEEEeCCCCCCC
Q 027417          121 VTILVGNKSDLKDA  134 (223)
Q Consensus       121 p~ivv~nK~Dl~~~  134 (223)
                      .++|+.||.|....
T Consensus       263 niFIlnnkwDasas  276 (749)
T KOG0448|consen  263 NIFILNNKWDASAS  276 (749)
T ss_pred             cEEEEechhhhhcc
Confidence            67777889997654

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=1.3e-07  Score=87.07  Aligned_cols=164  Identities=22%  Similarity=0.252  Sum_probs=96.0

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCCCCCC----ccceeEeEEEEEEECCEEEEEEEEeCCC----c----hhhhchhHhhh-
Q 027417           18 VLIGDSAVGKSNLLARFARDEFYPNSK----STIGVEFQTQKMDINGKEVKAQIWDTAG----Q----ERFRAVTSAYY-   84 (223)
Q Consensus        18 ~i~G~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~----~~~~~~~~~~~-   84 (223)
                      +|+|++|+||||++..- +..++....    ...+..+..+...+.++.+   ++||+|    +    +.....|..++ 
T Consensus       129 ~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaV---lIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         129 MVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTDEAV---LIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             EEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccccceE---EEcCCcceecccCcchhhHHHHHHHHH
Confidence            79999999999998732 223321110    1111112334455666666   999998    2    12334455442 


Q ss_pred             --------cCCCEEEEEEECCCHhh---------HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-----ccCHHHH
Q 027417           85 --------RGAVGALLVYDISRRQT---------FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR-----EVTTAEG  142 (223)
Q Consensus        85 --------~~~d~~i~v~d~~~~~s---------~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~  142 (223)
                              +..|++|+.+|+.+..+         ...++.-+.++........||+|++||.|+...-     ..+.++.
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~~~r  284 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNKEER  284 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccCHHHH
Confidence                    67999999999976211         2234555667777777789999999999987531     1121221


Q ss_pred             HHHHHHcCCeEEEEccCCCCC----HHHHHHHHHHHHHHHHhhhhhhhHhh
Q 027417          143 KALAEAQGLFFMETSALDSSN----VTAAFQTVVTEIYNILSRKVMISQEL  189 (223)
Q Consensus       143 ~~~~~~~~~~~~~~Sa~~~~~----i~~~~~~l~~~~~~~~~~~~~~~~~~  189 (223)
                      ..   -+|+ -|...+....+    +..-|..++.++..++..++..+...
T Consensus       285 ~q---vwG~-tf~~~~~~~~~~~~~~~~e~~~L~~rl~~~l~~rl~~e~~~  331 (1188)
T COG3523         285 EQ---VWGV-TFPLDARRNANLAAELEQEFRLLLDRLNAQLVERLQQERDL  331 (1188)
T ss_pred             hh---hcee-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence            11   1222 35556655533    45556666666666666666555444

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=2.7e-07  Score=78.09  Aligned_cols=140  Identities=19%  Similarity=0.167  Sum_probs=84.4

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      +.++++-|+|+|+||+||||||+.|+.+-.....+...|    ..+ .+.+...++++.++|.  .. .......+-+|.
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~--Dl-~~miDvaKIaDL  136 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPS--DL-HQMIDVAKIADL  136 (1077)
T ss_pred             cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChH--HH-HHHHhHHHhhhe
Confidence            345678889999999999999999986422111111111    111 2466778899999982  22 234445577999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccCHHHHH----HHHH--HcCCeEEEEccCCC
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREVTTAEGK----ALAE--AQGLFFMETSALDS  161 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~----~~~~--~~~~~~~~~Sa~~~  161 (223)
                      +++++|.+-.-.++.. .+++.+..+   +.| ++-|+|+.|+-.......+...    .|..  ..|+.+|.+|...+
T Consensus       137 VlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n  211 (1077)
T COG5192         137 VLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN  211 (1077)
T ss_pred             eEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence            9999998765333332 223333333   344 5667999998754322222222    1221  23788899887543

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=5.7e-08  Score=84.28  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=85.5

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC--------------CCCccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYP--------------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER   75 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   75 (223)
                      ..+...+|+++-+...|||||++.|+..+-..              ...++-|++.....+..-...+.+.++|+|||-.
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd   84 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD   84 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence            44567899999999999999999997643211              1123445666555555555678899999999999


Q ss_pred             hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027417           76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL  131 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl  131 (223)
                      |........+-+|++++++|+...-.-+.    +..++..+..+..+++|.||+|.
T Consensus        85 f~sevssas~l~d~alvlvdvvegv~~qt----~~vlrq~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   85 FSSEVSSASRLSDGALVLVDVVEGVCSQT----YAVLRQAWIEGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhhhcCCcEEEEeeccccchhH----HHHHHHHHHccCceEEEEehhhh
Confidence            99999999999999999999987533222    22222222335678999999994

>cd01856 YlqF YlqF

Probab=98.66  E-value=8e-08  Score=71.20  Aligned_cols=58  Identities=24%  Similarity=0.283  Sum_probs=41.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ   73 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   73 (223)
                      +..++++++|.+|+|||||++++.+..+... ....+++.....+.+.   ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4458999999999999999999998765422 2333455555555444   34679999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.65  E-value=7.2e-08  Score=74.75  Aligned_cols=154  Identities=21%  Similarity=0.162  Sum_probs=92.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCC----------chhhhch
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAG----------QERFRAV   79 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~   79 (223)
                      ....+.++++|.+++|||+|++.++......... +..|.+.....+.+..   .+.++|.||          -..+...
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence            4567999999999999999999998754433222 2445555555555554   455999999          2234555


Q ss_pred             hHhhhcCCC---EEEEEEECCCHh--hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc----cCHHHHHH------
Q 027417           80 TSAYYRGAV---GALLVYDISRRQ--TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE----VTTAEGKA------  144 (223)
Q Consensus        80 ~~~~~~~~d---~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~------  144 (223)
                      ...++.+-+   -+++++|++-+-  .-.....|+.+      .++|..+|.||||....--    -....+..      
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~  283 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI  283 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence            555553322   345566665431  11122333322      3799999999999753210    00111111      


Q ss_pred             -HHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417          145 -LAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus       145 -~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                       -......|++.+|+.++.|+++++-.+.+
T Consensus       284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ccceeccCCceeeecccccCceeeeeehhh
Confidence             11222456778999999999999877764

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.64  E-value=1e-07  Score=76.05  Aligned_cols=58  Identities=24%  Similarity=0.365  Sum_probs=42.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ   73 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   73 (223)
                      ...++|+++|.||+|||||+|+|.+........ ..|++.....+.+..   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEeCC---CEEEEECCCc
Confidence            356899999999999999999999866443322 235555555555543   4679999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.63  E-value=1.4e-07  Score=75.65  Aligned_cols=58  Identities=26%  Similarity=0.367  Sum_probs=42.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ   73 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   73 (223)
                      ...++|+|+|.||||||||+|+|.+...... ....|++.....+....   .+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            4568999999999999999999998765333 22335665555555543   4669999995

>cd01855 YqeH YqeH

Probab=98.63  E-value=7.2e-08  Score=72.65  Aligned_cols=57  Identities=21%  Similarity=0.350  Sum_probs=40.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYP-------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ   73 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   73 (223)
                      ..+++++|.+|+|||||+|+|.+.....       ......|++.....+.+..   .+.++||||.
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence            3689999999999999999999754311       1222235666666665543   4679999993

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.60  E-value=1.8e-07  Score=68.21  Aligned_cols=56  Identities=25%  Similarity=0.290  Sum_probs=39.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG   72 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   72 (223)
                      ...+++++|.+++|||||++++.+... ....++.|.+.....+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            457899999999999999999997553 23344555554443333333   577999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.60  E-value=4.7e-08  Score=70.93  Aligned_cols=59  Identities=24%  Similarity=0.281  Sum_probs=34.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CccceeEeEEEEEEECCEEEEEEEEeCCCchhh
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNS------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF   76 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   76 (223)
                      -.++++|++|||||||+|.|.+.......      ....-++.....+.++...+   ++||||...+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~---iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGY---IIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEE---EECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcE---EEECCCCCcc
Confidence            46789999999999999999986322111      11111222344445544444   9999996554

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.58  E-value=3.4e-08  Score=74.64  Aligned_cols=121  Identities=17%  Similarity=0.179  Sum_probs=81.4

Q ss_pred             EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh----------hHHHHHHHHHHHhhc-CCCCCcEEEEEeCC
Q 027417           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ----------TFDSIGRWLNELHTH-SDMNVVTILVGNKS  129 (223)
Q Consensus        61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~  129 (223)
                      ..+.+.+.|++|+.+.+.-|.+.+.+...+++++.++.-+          .+++-...+..+..+ +-.+.++|+.+||.
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence            4456779999999999999999999988888877766422          223333344444333 44578999999999


Q ss_pred             CCCCC----------------cccCHHHHHHHHHHc----CC------eEEEEccCCCCCHHHHHHHHHHHHHHHHhh
Q 027417          130 DLKDA----------------REVTTAEGKALAEAQ----GL------FFMETSALDSSNVTAAFQTVVTEIYNILSR  181 (223)
Q Consensus       130 Dl~~~----------------~~~~~~~~~~~~~~~----~~------~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  181 (223)
                      |+.++                .+...+.+++|..+.    +.      .-..+.|.+-+||.-+|.++...++....+
T Consensus       277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~Lk  354 (359)
T KOG0085|consen  277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK  354 (359)
T ss_pred             hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhH
Confidence            98652                223444555554322    21      124477889999999999988777665443

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.55  E-value=1.7e-07  Score=76.19  Aligned_cols=57  Identities=23%  Similarity=0.311  Sum_probs=45.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ   73 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   73 (223)
                      ..++++|+|.|+||||||||+|.+...... .+..|++.....+.....   +.|+||||.
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence            358899999999999999999999776433 333388887877777664   669999994

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.53  E-value=3.4e-06  Score=71.34  Aligned_cols=140  Identities=21%  Similarity=0.322  Sum_probs=86.4

Q ss_pred             ccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCccc------------------------------------
Q 027417            5 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPN-SKSTI------------------------------------   47 (223)
Q Consensus         5 ~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~-~~~~~------------------------------------   47 (223)
                      +..+...+..++|+|+|+.++||||.+..+....+.+. +....                                    
T Consensus       299 D~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~  378 (980)
T KOG0447|consen  299 DASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAA  378 (980)
T ss_pred             cccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHH
Confidence            34456667889999999999999999998865433221 11000                                    


Q ss_pred             ---------------e--eEeEEEEEEECCE-EEEEEEEeCCCc-------------hhhhchhHhhhcCCCEEEEEEEC
Q 027417           48 ---------------G--VEFQTQKMDINGK-EVKAQIWDTAGQ-------------ERFRAVTSAYYRGAVGALLVYDI   96 (223)
Q Consensus        48 ---------------~--~~~~~~~~~~~~~-~~~~~l~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~   96 (223)
                                     |  +........+.|. --++.+.|.||.             +..-.+..++..+++++|+|+--
T Consensus       379 LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD  458 (980)
T KOG0447|consen  379 LRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD  458 (980)
T ss_pred             HHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc
Confidence                           0  0011112222221 124679999992             22334567788999999999854


Q ss_pred             CCH-hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH
Q 027417           97 SRR-QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE  147 (223)
Q Consensus        97 ~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  147 (223)
                      ..- .....+......   ..+.+...|+|+||.|+.+.+-.+...++.+..
T Consensus       459 GSVDAERSnVTDLVsq---~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  459 GSVDAERSIVTDLVSQ---MDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             CCcchhhhhHHHHHHh---cCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence            332 222333333333   344578899999999999876677777777654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.52  E-value=3.4e-07  Score=66.72  Aligned_cols=57  Identities=23%  Similarity=0.315  Sum_probs=38.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ   73 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   73 (223)
                      ....+++++|.+|+|||||+|+|.+..... ...+  +++.........   ..+.++||||.
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~--~~t~~~~~~~~~---~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP--GTTTSQQEVKLD---NKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCC--CcccceEEEEec---CCEEEEECCCC
Confidence            456889999999999999999999865322 2222  333333334333   24679999983

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01858 NGP_1 NGP-1

Probab=98.52  E-value=5.9e-07  Score=65.55  Aligned_cols=87  Identities=15%  Similarity=0.046  Sum_probs=56.4

Q ss_pred             hhcCCCEEEEEEECCCHhh--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027417           83 YYRGAVGALLVYDISRRQT--FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD  160 (223)
Q Consensus        83 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (223)
                      .+..+|++++|+|++++..  ...+..++.   .. ..+.|+++|+||+|+...... ......+.+......+.+||++
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence            3578999999999998642  223333332   22 335899999999999643211 1112222222223357899999


Q ss_pred             CCCHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTE  174 (223)
Q Consensus       161 ~~~i~~~~~~l~~~  174 (223)
                      +.|++++++.+...
T Consensus        80 ~~~~~~L~~~l~~~   93 (157)
T cd01858          80 PFGKGSLIQLLRQF   93 (157)
T ss_pred             cccHHHHHHHHHHH
Confidence            99999999998654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.47  E-value=9.2e-07  Score=64.41  Aligned_cols=84  Identities=17%  Similarity=0.013  Sum_probs=55.1

Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      |++|+|+|+.++.+...  .++.. ......++|+++|+||+|+....++ .+....+....+..++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999988765432  23321 1112236899999999998642211 11111232333556899999999999999


Q ss_pred             HHHHHHHH
Q 027417          168 FQTVVTEI  175 (223)
Q Consensus       168 ~~~l~~~~  175 (223)
                      ++.+.+..
T Consensus        77 ~~~i~~~~   84 (155)
T cd01849          77 ESAFTKQT   84 (155)
T ss_pred             HHHHHHHh
Confidence            99987654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.46  E-value=3.3e-07  Score=75.17  Aligned_cols=58  Identities=17%  Similarity=0.266  Sum_probs=36.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCcc------ceeEeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027417           17 VVLIGDSAVGKSNLLARFARDEFYPNSKST------IGVEFQTQKMDINGKEVKAQIWDTAGQERFR   77 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   77 (223)
                      ++|+|.+|||||||+|+|++........-.      --++.....+.+.+..   .|+||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            789999999999999999976433211110      0123333444444333   399999976554

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.43  E-value=7.1e-06  Score=63.45  Aligned_cols=88  Identities=18%  Similarity=0.066  Sum_probs=53.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCC---ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc------h
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARD--EFYPNSK---STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA------V   79 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~   79 (223)
                      .....-|.|+|++++|||+|+|.|++.  .+.....   .|.|+-.....+. .+....+.++||+|......      .
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~   82 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDA   82 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhh
Confidence            345677899999999999999999987  5543222   2222221111111 12346788999999543222      1


Q ss_pred             hHhhhc--CCCEEEEEEECCCH
Q 027417           80 TSAYYR--GAVGALLVYDISRR   99 (223)
Q Consensus        80 ~~~~~~--~~d~~i~v~d~~~~   99 (223)
                      ....+.  -++++|+..+....
T Consensus        83 ~~~~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          83 RLFALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHHHHHhCEEEEeccCccc
Confidence            222233  38888887777653

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=1.8e-06  Score=68.98  Aligned_cols=148  Identities=19%  Similarity=0.149  Sum_probs=95.0

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcC-------------CCCCCC-CccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARD-------------EFYPNS-KSTIGVEFQTQKMDINGKEVKAQIWDTAGQE   74 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~-------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   74 (223)
                      .++.+..||.-+|+..-|||||-.+++.-             .++..+ ...-|+++....+.+.-.....-=.|+||+.
T Consensus        49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA  128 (449)
T KOG0460|consen   49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA  128 (449)
T ss_pred             ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence            45677899999999999999998777531             011000 0122555666655554333334467999999


Q ss_pred             hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc---ccCHHHHHHHHHHcC-
Q 027417           75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR---EVTTAEGKALAEAQG-  150 (223)
Q Consensus        75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~-  150 (223)
                      .|-.....-..+-|+.|+|+..++..--+. +..+-..+...  -..+++.+||.|+.+..   ++-..+.+++...++ 
T Consensus       129 DYIKNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf  205 (449)
T KOG0460|consen  129 DYIKNMITGAAQMDGAILVVAATDGPMPQT-REHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF  205 (449)
T ss_pred             HHHHHhhcCccccCceEEEEEcCCCCCcch-HHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence            998888877789999999999999432111 11122222221  14566779999998432   344567788877776 


Q ss_pred             ----CeEEEEccC
Q 027417          151 ----LFFMETSAL  159 (223)
Q Consensus       151 ----~~~~~~Sa~  159 (223)
                          +|++.-||.
T Consensus       206 ~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  206 DGDNTPVIRGSAL  218 (449)
T ss_pred             CCCCCCeeecchh
Confidence                467776653

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.41  E-value=4.1e-06  Score=68.03  Aligned_cols=145  Identities=19%  Similarity=0.216  Sum_probs=80.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------Cc--------------cceeEeEEEEEE-------E------C
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNS-------KS--------------TIGVEFQTQKMD-------I------N   59 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~-------~~--------------~~~~~~~~~~~~-------~------~   59 (223)
                      .--|+++|++|+||||++..|.+.......       +.              ..+..+......       +      .
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~  193 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK  193 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            457889999999999999887652111100       00              001111111000       0      1


Q ss_pred             CEEEEEEEEeCCCchhhhch----hHhh--------hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 027417           60 GKEVKAQIWDTAGQERFRAV----TSAY--------YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN  127 (223)
Q Consensus        60 ~~~~~~~l~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n  127 (223)
                      ...+.+.++||||.......    ....        -..++..++|+|++...  +.+.. ...+...   -.+.-+|+|
T Consensus       194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~---~~~~giIlT  267 (318)
T PRK10416        194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA---VGLTGIILT  267 (318)
T ss_pred             hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh---CCCCEEEEE
Confidence            13457889999995432221    1111        13577889999998632  22222 1222211   134578899


Q ss_pred             CCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417          128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus       128 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |.|...    ..-.+...+...++|+..++  +|++++++-..
T Consensus       268 KlD~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~  304 (318)
T PRK10416        268 KLDGTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQPF  304 (318)
T ss_pred             CCCCCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence            999543    12344555667799988887  77777766443

>PRK12289 GTPase RsgA; Reviewed

Probab=98.41  E-value=4.6e-07  Score=74.35  Aligned_cols=55  Identities=27%  Similarity=0.371  Sum_probs=35.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCccce-------eEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417           17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIG-------VEFQTQKMDINGKEVKAQIWDTAGQER   75 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~D~~G~~~   75 (223)
                      ++|+|++|||||||||+|++.......... +       ++.....+..++..   .|+||||...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs-~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~  236 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVS-GKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ  236 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCcccccccccc-CCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence            799999999999999999975433211111 1       23344444454333   4999999644

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=3.8e-07  Score=74.53  Aligned_cols=135  Identities=19%  Similarity=0.219  Sum_probs=98.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCCCC--------ccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARD--------EFYPNSK--------STIGVEFQTQKMDINGKEVKAQIWDTAGQER   75 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~--------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   75 (223)
                      ....+|.|+.+-.+||||.-.++++-        ..+....        ..-|.+....-+.++..++++.++||||+-.
T Consensus        35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd  114 (753)
T KOG0464|consen   35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD  114 (753)
T ss_pred             hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence            44578999999999999998887652        1111110        1225677788888899999999999999999


Q ss_pred             hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe
Q 027417           76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF  152 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  152 (223)
                      |.--.+..++-.|+++.|||.+..-.-+.+.-|.+.    .+.++|.+...||+|...++.  ...+...-+++++.
T Consensus       115 f~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~anf--e~avdsi~ekl~ak  185 (753)
T KOG0464|consen  115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLAANF--ENAVDSIEEKLGAK  185 (753)
T ss_pred             EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhCCc
Confidence            999999999999999999999986655566666443    344789999999999865422  12223334455554

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.40  E-value=3.5e-06  Score=68.29  Aligned_cols=155  Identities=17%  Similarity=0.150  Sum_probs=86.1

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------CCccceeEe--------------------
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPN------------------SKSTIGVEF--------------------   51 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~------------------~~~~~~~~~--------------------   51 (223)
                      .+=.+++|+++|+..+|||||+..|+.+..+..                  .....|.++                    
T Consensus       129 ~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~L  208 (641)
T KOG0463|consen  129 KDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNL  208 (641)
T ss_pred             ccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcc
Confidence            344579999999999999999987765433211                  111111111                    


Q ss_pred             EEEEEEECCEEEEEEEEeCCCchhhhchh--HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q 027417           52 QTQKMDINGKEVKAQIWDTAGQERFRAVT--SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKS  129 (223)
Q Consensus        52 ~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~  129 (223)
                      ....+ ..+..-.++++|.+|++.|....  .+.-.-.|...+++..+-.-  -...  .+.+.-......|+++|+||+
T Consensus       209 dWvkI-ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI--iGmT--KEHLgLALaL~VPVfvVVTKI  283 (641)
T KOG0463|consen  209 DWVKI-CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI--IGMT--KEHLGLALALHVPVFVVVTKI  283 (641)
T ss_pred             cceee-ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc--eecc--HHhhhhhhhhcCcEEEEEEee
Confidence            11111 11223347899999999986543  22234467667776665421  0000  111211223368999999999


Q ss_pred             CCCCCcccCH--HHHHHHHH--------------------------HcCCeEEEEccCCCCCHHHHHH
Q 027417          130 DLKDAREVTT--AEGKALAE--------------------------AQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus       130 Dl~~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      |+..++.+..  .....+.+                          +.=||+|.+|..+|.|+..+..
T Consensus       284 DMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm  351 (641)
T KOG0463|consen  284 DMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM  351 (641)
T ss_pred             ccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence            9765432211  11112222                          2235688999999999876543

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.38  E-value=1.7e-06  Score=61.97  Aligned_cols=77  Identities=18%  Similarity=0.190  Sum_probs=52.6

Q ss_pred             HhhhcCCCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027417           81 SAYYRGAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA  158 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (223)
                      ...+..+|++++|+|+.++.+..  .+..|+...   . .++|+++|+||+|+.+...  .....+.....+..++.+||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            34558899999999999876533  444554432   1 3689999999999864322  23334455566778999999


Q ss_pred             CCCCC
Q 027417          159 LDSSN  163 (223)
Q Consensus       159 ~~~~~  163 (223)
                      .++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            87653

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.36  E-value=4.2e-06  Score=66.50  Aligned_cols=96  Identities=15%  Similarity=0.054  Sum_probs=57.7

Q ss_pred             EEEEEEEeCCCchhhhchhH-------hhh-----cCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 027417           62 EVKAQIWDTAGQERFRAVTS-------AYY-----RGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNK  128 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK  128 (223)
                      .+.+.++||||.........       ...     ..+|.+++|+|.+... .+..+    ..+.+..   .+.-+|.||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEEc
Confidence            46788999999654322211       111     2388999999997532 23322    2222211   245788999


Q ss_pred             CCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417          129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus       129 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      .|...    ..-.+..+....+.|+..++  +|++++++-..
T Consensus       227 lDe~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~  262 (272)
T TIGR00064       227 LDGTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLAPF  262 (272)
T ss_pred             cCCCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence            99653    23344555666789987777  77777666443

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.34  E-value=8.1e-07  Score=70.40  Aligned_cols=59  Identities=24%  Similarity=0.257  Sum_probs=38.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC------CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEF------YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR   77 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   77 (223)
                      -.+++|++|||||||+|+|.....      .......--+++....+.+++.++   ++||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence            457999999999999999986322      111111112344555666665555   89999975543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.34  E-value=5.4e-07  Score=67.76  Aligned_cols=137  Identities=23%  Similarity=0.264  Sum_probs=73.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE-----
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA-----   90 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~-----   90 (223)
                      .|+|+|++|||||||++++.+-+...           ...+.+++..+.... |   ....+......+.+.+.+     
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~~~-----------~G~I~i~g~~~~~~~-~---~~~~R~~vGmVFQ~fnLFPHlTv   94 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEEPD-----------SGSITVDGEDVGDKK-D---ILKLRRKVGMVFQQFNLFPHLTV   94 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcCCC-----------CceEEECCEeccchh-h---HHHHHHhcCeecccccccccchH
Confidence            57899999999999999998754322           223334443221000 1   111222222223322222     


Q ss_pred             --------EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC-----CCCCcccCHHHHHHHHHHcCCeEEE--
Q 027417           91 --------LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD-----LKDAREVTTAEGKALAEAQGLFFME--  155 (223)
Q Consensus        91 --------i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D-----l~~~~~~~~~~~~~~~~~~~~~~~~--  155 (223)
                              +.|-.....+.-+....++..+.           +..|.|     |....+...+-++.++....+-+|.  
T Consensus        95 leNv~lap~~v~~~~k~eA~~~A~~lL~~VG-----------L~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEP  163 (240)
T COG1126          95 LENVTLAPVKVKKLSKAEAREKALELLEKVG-----------LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEP  163 (240)
T ss_pred             HHHHHhhhHHHcCCCHHHHHHHHHHHHHHcC-----------chhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCC
Confidence                    11222222233333344444432           122333     2233445566677777777776664  


Q ss_pred             EccCCCCCHHHHHHHHHHHHHHH
Q 027417          156 TSALDSSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       156 ~Sa~~~~~i~~~~~~l~~~~~~~  178 (223)
                      +||.+.+-+.++++.+...+.+-
T Consensus       164 TSALDPElv~EVL~vm~~LA~eG  186 (240)
T COG1126         164 TSALDPELVGEVLDVMKDLAEEG  186 (240)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcC
Confidence            89999999999999887766443

>cd01856 YlqF YlqF

Probab=98.32  E-value=2.4e-06  Score=63.27  Aligned_cols=91  Identities=18%  Similarity=0.049  Sum_probs=60.0

Q ss_pred             hchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEE
Q 027417           77 RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMET  156 (223)
Q Consensus        77 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (223)
                      .......+.++|++++|+|++++...... .+...+     .+.|+++|+||+|+.....  .....++....+..++.+
T Consensus        10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~i   81 (171)
T cd01856          10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFV   81 (171)
T ss_pred             HHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence            33445567899999999999876442211 122221     1478999999999864211  111112223334568999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 027417          157 SALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ||+++.|++++.+.+...+
T Consensus        82 Sa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          82 NAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             ECCCcccHHHHHHHHHHHH
Confidence            9999999999999988765

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=9.7e-06  Score=62.26  Aligned_cols=155  Identities=21%  Similarity=0.292  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCC--CHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEE----EEEEeCCCchhhhchhHhhhcCCC
Q 027417           15 FKVVLIGDSAV--GKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK----AQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus        15 ~~i~i~G~~~s--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      .-++++|.+|+  ||.+|+.+|....+.........+.+..  ++++.++|.    +.+.-..  +.+.-..........
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hg--wtid~kyysadi~lcishic--de~~lpn~~~a~pl~   80 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHG--WTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPLQ   80 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeec--eEecceeeecceeEEeeccc--chhccCCccccccee
Confidence            34789999998  9999999998877765444332233332  333433332    2222221  112111222234567


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCC----------------------------------
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKD----------------------------------  133 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~----------------------------------  133 (223)
                      +++++||.+...++..++.|+..-...   ..- .+.|+||.|...                                  
T Consensus        81 a~vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset  157 (418)
T KOG4273|consen   81 AFVMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET  157 (418)
T ss_pred             eEEEEEeccchhhhHHHHhhccccccc---cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence            899999999999999999998754322   122 345589998632                                  


Q ss_pred             --------C--cccCHHHHHHHHHHcCCeEEEEccC------------CCCCHHHHHHHHHHHHH
Q 027417          134 --------A--REVTTAEGKALAEAQGLFFMETSAL------------DSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       134 --------~--~~~~~~~~~~~~~~~~~~~~~~Sa~------------~~~~i~~~~~~l~~~~~  176 (223)
                              +  .-.....+.+++.++++.|++.++.            +..|+..+|.+|-..+-
T Consensus       158 egssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw  222 (418)
T KOG4273|consen  158 EGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW  222 (418)
T ss_pred             ccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence                    0  0012234567888999999998874            33577778877755543

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.31  E-value=4.5e-06  Score=66.63  Aligned_cols=99  Identities=16%  Similarity=0.053  Sum_probs=64.3

Q ss_pred             CCchh-hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 027417           71 AGQER-FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ  149 (223)
Q Consensus        71 ~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  149 (223)
                      |||.. ........+..+|++|+|+|+..+.+... ......+     .+.|+++|+||+|+.+...  .....+.....
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~   76 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK   76 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence            55432 33445667789999999999987654322 1111112     1579999999999864211  11111222334


Q ss_pred             CCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417          150 GLFFMETSALDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       150 ~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  177 (223)
                      +.+++.+||+++.|++++.+.+.+.+.+
T Consensus        77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        77 GIKALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            5678999999999999999998776644

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=3.4e-06  Score=72.04  Aligned_cols=117  Identities=21%  Similarity=0.168  Sum_probs=84.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCC-------------ccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEF---YPNSK-------------STIGVEFQTQKMDINGKEVKAQIWDTAGQER   75 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~---~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   75 (223)
                      ....+|.+.-+-.+||||+-++.+...-   .....             ...|++....-..+....+.+.++|||||-.
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            5667899999999999999887754211   00000             1113444444445555678899999999999


Q ss_pred             hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                      |.--.+..++-.|+.|+++|....-.-+...-|.+.-+.    ++|.|..+||+|..
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry----~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY----NVPRICFINKMDRM  169 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhc----CCCeEEEEehhhhc
Confidence            888888888999999999998876555555566555332    68999999999963

>PRK14974 cell division protein FtsY; Provisional

Probab=98.30  E-value=1.5e-06  Score=70.92  Aligned_cols=96  Identities=11%  Similarity=0.030  Sum_probs=56.9

Q ss_pred             EEEEEEeCCCchhhhc-h---hHhh--hcCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           63 VKAQIWDTAGQERFRA-V---TSAY--YRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      +.+.|+||+|...... +   ....  ..+.|.+++|+|+..... .+.+..+...       -.+--+|.||.|.... 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~~giIlTKlD~~~~-  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGIDGVILTKVDADAK-  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCCCEEEEeeecCCCC-
Confidence            4688999999653221 1   1111  135788899999976432 2222222221       1235788999997532 


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417          136 EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                         .-.+..++...+.|+..++  +|.+++++...=
T Consensus       295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~  325 (336)
T PRK14974        295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLIPFD  325 (336)
T ss_pred             ---ccHHHHHHHHHCcCEEEEe--CCCChhhcccCC
Confidence               2233444556789987776  788887765443

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.28  E-value=2.1e-05  Score=65.01  Aligned_cols=161  Identities=19%  Similarity=0.249  Sum_probs=91.1

Q ss_pred             cccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC--------------CCCccceeEe----------EEEEEEE-CC
Q 027417            6 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYP--------------NSKSTIGVEF----------QTQKMDI-NG   60 (223)
Q Consensus         6 ~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~--------------~~~~~~~~~~----------~~~~~~~-~~   60 (223)
                      +-..+....+=|.|+||..+||||||.++...-.-+              -+....|-+.          ....+.+ ++
T Consensus         9 DIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~   88 (492)
T PF09547_consen    9 DIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDG   88 (492)
T ss_pred             HHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCC
Confidence            344555667889999999999999999986521111              1111111111          1122333 45


Q ss_pred             EEEEEEEEeCCCc--------hh---hh---chh--------Hh-------hh-c-CCCEEEEEEECCC----HhhHHHH
Q 027417           61 KEVKAQIWDTAGQ--------ER---FR---AVT--------SA-------YY-R-GAVGALLVYDISR----RQTFDSI  105 (223)
Q Consensus        61 ~~~~~~l~D~~G~--------~~---~~---~~~--------~~-------~~-~-~~d~~i~v~d~~~----~~s~~~~  105 (223)
                      -.+++.++|+.|-        ..   .+   +-|        .+       .+ . ..-++++.-|.+=    ++.+...
T Consensus        89 ~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eA  168 (492)
T PF09547_consen   89 IKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEA  168 (492)
T ss_pred             ceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHH
Confidence            6788999999881        00   00   000        00       01 1 2335666666542    3333333


Q ss_pred             -HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC--CCCCHHHHHHHH
Q 027417          106 -GRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL--DSSNVTAAFQTV  171 (223)
Q Consensus       106 -~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~l  171 (223)
                       +.-..++...   ++|+|+++|-.+-.  .+-..+.+.++..+++++++.+++.  +...|..+++.+
T Consensus       169 EervI~ELk~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v  232 (492)
T PF09547_consen  169 EERVIEELKEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV  232 (492)
T ss_pred             HHHHHHHHHHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence             3344444443   79999999977744  2335677788888999998877653  334555555443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK13796 GTPase YqeH; Provisional

Probab=98.27  E-value=6.6e-06  Score=68.24  Aligned_cols=94  Identities=24%  Similarity=0.301  Sum_probs=62.1

Q ss_pred             hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHHHc
Q 027417           74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA----LAEAQ  149 (223)
Q Consensus        74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~~  149 (223)
                      +.+...........+.+++|+|+.+..     ..|...+..... +.|+++|+||+|+.. .....+....    +++..
T Consensus        57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence            345554444433344899999997743     234444443332 578999999999964 2333333333    35556


Q ss_pred             CC---eEEEEccCCCCCHHHHHHHHHHH
Q 027417          150 GL---FFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       150 ~~---~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      ++   .++.+||+++.|++++++.|.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            65   58999999999999999998653

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.27  E-value=6.2e-06  Score=60.25  Aligned_cols=64  Identities=16%  Similarity=0.131  Sum_probs=37.6

Q ss_pred             EEEEEEEeCCCchhhhchhHh--------hhcCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027417           62 EVKAQIWDTAGQERFRAVTSA--------YYRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDL  131 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl  131 (223)
                      .....++|++|..........        ..-..|.+++++|+.+... ++....+..++...      =++|+||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence            345679999996543333322        2235888999999865332 22222333444322      2778999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK13796 GTPase YqeH; Provisional

Probab=98.27  E-value=1.4e-06  Score=72.26  Aligned_cols=57  Identities=21%  Similarity=0.348  Sum_probs=38.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC----CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEF----YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE   74 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   74 (223)
                      .++.++|.+|||||||+|+|+....    ........|++.....+.+++..   .++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~---~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGS---FLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCc---EEEECCCcc
Confidence            4799999999999999999986431    11112233555555555555432   599999964

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.27  E-value=1.4e-06  Score=68.25  Aligned_cols=58  Identities=24%  Similarity=0.248  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CccceeEeEEEEEEECCEEEEEEEEeCCCchhh
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNS------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF   76 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   76 (223)
                      -.++++|.+|||||||+|+|.+.......      .....++.....+...+ .   .++||||...+
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~-~---~liDtPG~~~~  184 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG-G---LIADTPGFNEF  184 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC-c---EEEeCCCcccc
Confidence            36789999999999999999975432211      11111233333344432 2   49999996543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.22  E-value=3.1e-06  Score=70.07  Aligned_cols=58  Identities=19%  Similarity=0.331  Sum_probs=38.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC----CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFY----PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER   75 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   75 (223)
                      .+|+++|.+|||||||+|+|++....    .......|++.....+...+.   +.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCC
Confidence            58999999999999999999974321    111222345555555555332   45999999543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.20  E-value=7.6e-06  Score=65.69  Aligned_cols=100  Identities=18%  Similarity=0.146  Sum_probs=65.3

Q ss_pred             CCCchh-hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 027417           70 TAGQER-FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEA  148 (223)
Q Consensus        70 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  148 (223)
                      .|||.. -.......+..+|++|+|+|+..+.+...  .++....   . +.|+++|+||+|+.+...  .+...++...
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            466432 33345566789999999999987654322  1122211   1 589999999999864211  1122222334


Q ss_pred             cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417          149 QGLFFMETSALDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       149 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  177 (223)
                      .+.+++.+|++++.|++++.+.+...+.+
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            46778999999999999999988776543

>PRK01889 GTPase RsgA; Reviewed

Probab=98.18  E-value=1e-05  Score=66.89  Aligned_cols=83  Identities=18%  Similarity=0.216  Sum_probs=59.1

Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEEccCCCC
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE-AQGLFFMETSALDSS  162 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  162 (223)
                      ..++|.+++|+++..+-....+..++..+...   ++++++|+||+|+.+...   +....+.. ..+.+++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence            57899999999997544555566666665443   577899999999975311   11222222 446789999999999


Q ss_pred             CHHHHHHHHH
Q 027417          163 NVTAAFQTVV  172 (223)
Q Consensus       163 ~i~~~~~~l~  172 (223)
                      |++++..+|.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999988874

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.17  E-value=3.9e-06  Score=67.34  Aligned_cols=59  Identities=25%  Similarity=0.326  Sum_probs=37.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------ccceeEeEEEEEEECCEEEEEEEEeCCCchhh
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK------STIGVEFQTQKMDINGKEVKAQIWDTAGQERF   76 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   76 (223)
                      ..++++|++|+|||||+|.|.+........      ....++.....+...+..   .++||||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence            468999999999999999999864432111      111123334444444333   49999997655

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.14  E-value=5e-06  Score=67.08  Aligned_cols=58  Identities=31%  Similarity=0.359  Sum_probs=35.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcc----ce--eEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKST----IG--VEFQTQKMDINGKEVKAQIWDTAGQER   75 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~l~D~~G~~~   75 (223)
                      ..++++|++|||||||+|+|.+........-.    .|  ++.....+..++..   .++||||...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~---~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGG---LLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCc---EEEECCCcCc
Confidence            35899999999999999999875433211110    01  22233333344333   5999999643

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.14  E-value=2.4e-05  Score=60.53  Aligned_cols=72  Identities=21%  Similarity=0.225  Sum_probs=51.0

Q ss_pred             EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh-------hHHHHHHHHHHH----hhcCCCCCcEEEEEeCC
Q 027417           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ-------TFDSIGRWLNEL----HTHSDMNVVTILVGNKS  129 (223)
Q Consensus        61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i----~~~~~~~~p~ivv~nK~  129 (223)
                      ..+.++++|++|+...++-|...+....++|+|...+.-.       +-+.++.-+..+    ...+-..+.+|+.+||-
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            3467899999999999999999999999999999987521       122233222222    22222357789999999


Q ss_pred             CCC
Q 027417          130 DLK  132 (223)
Q Consensus       130 Dl~  132 (223)
                      |+.
T Consensus       280 Dll  282 (379)
T KOG0099|consen  280 DLL  282 (379)
T ss_pred             HHH
Confidence            973

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=3.3e-06  Score=66.61  Aligned_cols=159  Identities=18%  Similarity=0.159  Sum_probs=96.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCC---CC--CCCccceeEe-----E------------------------EEEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEF---YP--NSKSTIGVEF-----Q------------------------TQKM   56 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~---~~--~~~~~~~~~~-----~------------------------~~~~   56 (223)
                      .+-.++|.-+|+...||||++.++.+-..   ..  +..-|+..-+     +                        .+..
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            45679999999999999999998865210   00  0000000000     0                        0000


Q ss_pred             E-ECC---EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCC----HhhHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 027417           57 D-ING---KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISR----RQTFDSIGRWLNELHTHSDMNVVTILVGNK  128 (223)
Q Consensus        57 ~-~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK  128 (223)
                      . ..+   --..+.+.|+||++-.......-..-.|+.++++..+.    |++-+.+...  ++-.    -++++++-||
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav--eiM~----LkhiiilQNK  188 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV--EIMK----LKHIIILQNK  188 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH--HHhh----hceEEEEech
Confidence            0 000   01236699999998765555444445677777777765    3333332211  1111    2568889999


Q ss_pred             CCCCCCccc--CHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          129 SDLKDAREV--TTAEGKALAEA---QGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       129 ~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      +|+..+.+.  ..++++.|...   .++|++++||--+.|++-+.+.|+.++
T Consensus       189 iDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  189 IDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            999864332  23445555543   367899999999999999999988655

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.12  E-value=1.1e-05  Score=62.99  Aligned_cols=61  Identities=21%  Similarity=0.461  Sum_probs=44.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----ccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK----STIGVEFQTQKMDINGKEVKAQIWDTAG   72 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~G   72 (223)
                      .-.++|+-+|..|.||||||+.|.+..+...+.    +............-.+..+.+++.||.|
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            346999999999999999999999987765443    2222222333334466778899999998

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.07  E-value=4e-05  Score=64.37  Aligned_cols=84  Identities=14%  Similarity=0.005  Sum_probs=46.3

Q ss_pred             EEEEEEEeCCCchhhhchh-H---hh--hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           62 EVKAQIWDTAGQERFRAVT-S---AY--YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~-~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      .+.+.|+||+|........ .   .+  ...++-+++|+|.+....-   ......+...   -.+.-+|+||.|.... 
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~---~~~~g~IlTKlD~~ar-  254 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS---VDVGSVIITKLDGHAK-  254 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc---cCCcEEEEECccCCCC-
Confidence            4678899999954432211 1   11  2357889999998754322   1122222221   2356788999996531 


Q ss_pred             ccCHHHHHHHHHHcCCeEEE
Q 027417          136 EVTTAEGKALAEAQGLFFME  155 (223)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~  155 (223)
                         .=.+.......+.|+..
T Consensus       255 ---gG~aLs~~~~t~~PI~f  271 (429)
T TIGR01425       255 ---GGGALSAVAATKSPIIF  271 (429)
T ss_pred             ---ccHHhhhHHHHCCCeEE
Confidence               22233444555666444

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=6.5e-05  Score=62.08  Aligned_cols=140  Identities=14%  Similarity=0.057  Sum_probs=71.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCC-C--CCccceeEeE------------------EEEEEE---------CCEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYP-N--SKSTIGVEFQ------------------TQKMDI---------NGKEV   63 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~-~--~~~~~~~~~~------------------~~~~~~---------~~~~~   63 (223)
                      .-.++|+|++|+||||++..|....... .  .......+.+                  ......         .-...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            3578899999999999999887532111 0  0000011110                  000000         01234


Q ss_pred             EEEEEeCCCchhhhchhHh---hh---cCCCEEEEEEECCC-HhhHHHHHHHHHHHhhcCCC--CCcEEEEEeCCCCCCC
Q 027417           64 KAQIWDTAGQERFRAVTSA---YY---RGAVGALLVYDISR-RQTFDSIGRWLNELHTHSDM--NVVTILVGNKSDLKDA  134 (223)
Q Consensus        64 ~~~l~D~~G~~~~~~~~~~---~~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~~  134 (223)
                      .+.|+||+|..........   .+   ...+-.++|++.+. ......+..-+.........  ..+--+|.||.|... 
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-  295 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-  295 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence            6789999995543222111   12   23345678888876 34444443322322111000  013357789999653 


Q ss_pred             cccCHHHHHHHHHHcCCeEEEEc
Q 027417          135 REVTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~S  157 (223)
                         ..=.+..++...+.|+..++
T Consensus       296 ---~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        296 ---NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             ---CccHHHHHHHHHCcCeEEEe
Confidence               34445666677788855544

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.02  E-value=2.3e-05  Score=57.74  Aligned_cols=135  Identities=19%  Similarity=0.221  Sum_probs=66.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDT-AGQ---------------------   73 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~G~---------------------   73 (223)
                      +|+|.|++|+|||||+++++...... ..+..|+  ....+.-++..+-+.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~Gf--~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGGF--YTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEEE--EEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCccceE--EeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999987632211 1122232  2233334555555666666 331                     


Q ss_pred             -hhhhc----hhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCC-CCCCCcccCHHHHHHHHH
Q 027417           74 -ERFRA----VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKS-DLKDAREVTTAEGKALAE  147 (223)
Q Consensus        74 -~~~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~  147 (223)
                       +.+..    .....+..+|  ++++|---+..+. ...|.+.+....+.++|++.++.+. +..        ....+..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~s~~~vi~vv~~~~~~~--------~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLDSNKPVIGVVHKRSDNP--------FLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCTTSEEEEE--SS--SC--------CHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHcCCCcEEEEEecCCCcH--------HHHHHHh
Confidence             11111    1112224556  6778854432111 1234444444444568887777655 321        2344556


Q ss_pred             HcCCeEEEEccCCCCCH
Q 027417          148 AQGLFFMETSALDSSNV  164 (223)
Q Consensus       148 ~~~~~~~~~Sa~~~~~i  164 (223)
                      ..++.+++++..+...+
T Consensus       147 ~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTSEEEE--TTTCCCH
T ss_pred             CCCcEEEEeChhHHhhH
Confidence            67788999877765554

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK13695 putative NTPase; Provisional

Probab=98.01  E-value=0.00017  Score=53.42  Aligned_cols=77  Identities=9%  Similarity=0.061  Sum_probs=43.4

Q ss_pred             hhcCCCEEEEEEEC---CCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027417           83 YYRGAVGALLVYDI---SRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL  159 (223)
Q Consensus        83 ~~~~~d~~i~v~d~---~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (223)
                      .+..+++  +++|-   .+..+    ..+.+.+......+.|++++.+|....       ..+..+....+..++++   
T Consensus        93 ~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~---  156 (174)
T PRK13695         93 ALEEADV--IIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL---  156 (174)
T ss_pred             ccCCCCE--EEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---
Confidence            3456775  68883   22222    223333333333468999999874321       22344555567777777   


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027417          160 DSSNVTAAFQTVVTEI  175 (223)
Q Consensus       160 ~~~~i~~~~~~l~~~~  175 (223)
                      +.+|-+++.+.++..+
T Consensus       157 ~~~~r~~~~~~~~~~~  172 (174)
T PRK13695        157 TPENRDSLPFEILNRL  172 (174)
T ss_pred             cchhhhhHHHHHHHHH
Confidence            5556668888777644

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.01  E-value=5.6e-05  Score=63.60  Aligned_cols=197  Identities=15%  Similarity=0.117  Sum_probs=113.6

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCC------------CCCC--CccceeEeEEEEEE----------------E
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEF------------YPNS--KSTIGVEFQTQKMD----------------I   58 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~------------~~~~--~~~~~~~~~~~~~~----------------~   58 (223)
                      .......++.++-+...|||||-+.|....-            ....  .+.-++++...-+.                -
T Consensus        14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~   93 (842)
T KOG0469|consen   14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG   93 (842)
T ss_pred             ccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence            3455677889999999999999999875311            1100  01112222222111                1


Q ss_pred             CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-Cccc
Q 027417           59 NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD-AREV  137 (223)
Q Consensus        59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~  137 (223)
                      ++..+-+.++|.||+-.|.+-..+.++-.|+.++|+|..+.--.+.-.-+.+.+.+    .+..++++||.|..- +-++
T Consensus        94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~  169 (842)
T KOG0469|consen   94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQL  169 (842)
T ss_pred             CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcC
Confidence            34567799999999999999999999999999999998875333322222223332    355688999999531 2345


Q ss_pred             CHHHHHHHHH----HcCCe--------------------EEEEccCCCCCHHHHHHHHHHHHHHHHh-hhhhhhHhhhhc
Q 027417          138 TTAEGKALAE----AQGLF--------------------FMETSALDSSNVTAAFQTVVTEIYNILS-RKVMISQELKQK  192 (223)
Q Consensus       138 ~~~~~~~~~~----~~~~~--------------------~~~~Sa~~~~~i~~~~~~l~~~~~~~~~-~~~~~~~~~~~~  192 (223)
                      +.++..+...    ..++.                    +-.+|..+|+.+.  +...++...+... ........++-.
T Consensus       170 ~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFT--lrQFa~~Y~~KF~~~~~kmm~~LWg~  247 (842)
T KOG0469|consen  170 SQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFT--LRQFAEMYAKKFGIDVRKMMNRLWGD  247 (842)
T ss_pred             CHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhh--HHHHHHHHHHHhCCcHHHHHHHhhcc
Confidence            5555443322    12211                    1225666766643  2222333333322 222334455555


Q ss_pred             cCCCCCCceeeecCCCccc
Q 027417          193 DSSSFNGKTVVLEGEKKEA  211 (223)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~  211 (223)
                      .-.-+..++.+...+....
T Consensus       248 ~~f~~ktkk~~~s~t~~~g  266 (842)
T KOG0469|consen  248 NFFNPKTKKWSKSATDAEG  266 (842)
T ss_pred             cccCccCCccccccccccc
Confidence            5566666666666666555

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.99  E-value=7.6e-05  Score=56.46  Aligned_cols=85  Identities=16%  Similarity=0.068  Sum_probs=49.2

Q ss_pred             EEEEEEeCCCchhhhch----hHhh--hcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           63 VKAQIWDTAGQERFRAV----TSAY--YRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      +.+.|+||+|.......    +..+  ....+-+++|++.+... ..+.+...+..+       .+--+|.||.|...  
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~~~~lIlTKlDet~--  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------GIDGLILTKLDETA--  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------STCEEEEESTTSSS--
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------cCceEEEEeecCCC--
Confidence            45789999995443221    1111  12577888899988753 333333333221       12357799999653  


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEcc
Q 027417          136 EVTTAEGKALAEAQGLFFMETSA  158 (223)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~Sa  158 (223)
                        ..-.+..++...+.|+-.++.
T Consensus       155 --~~G~~l~~~~~~~~Pi~~it~  175 (196)
T PF00448_consen  155 --RLGALLSLAYESGLPISYITT  175 (196)
T ss_dssp             --TTHHHHHHHHHHTSEEEEEES
T ss_pred             --CcccceeHHHHhCCCeEEEEC
Confidence              334456677788888665553

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.98  E-value=2.3e-05  Score=57.54  Aligned_cols=145  Identities=20%  Similarity=0.279  Sum_probs=83.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC---------chhhhchhHhhhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG---------QERFRAVTSAYYRG   86 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G---------~~~~~~~~~~~~~~   86 (223)
                      -|.|+|.+|||||||++.+.-.+.+.           ...+.++++.+.+. -|-.|         .++.++...+.+.+
T Consensus        34 VisIIGsSGSGKSTfLRCiN~LE~P~-----------~G~I~v~geei~~k-~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~  101 (256)
T COG4598          34 VISIIGSSGSGKSTFLRCINFLEKPS-----------AGSIRVNGEEIRLK-RDKDGQLKPADKRQLQRLRTRLGMVFQH  101 (256)
T ss_pred             EEEEecCCCCchhHHHHHHHhhcCCC-----------CceEEECCeEEEee-eCCCCCeeeCCHHHHHHHHHHhhHhhhh
Confidence            47899999999999999876533221           12233444443321 23222         11222222222322


Q ss_pred             C-------------CEEEEEEECCCHhhHHHHHHHHHHHhhcCCC-CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe
Q 027417           87 A-------------VGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF  152 (223)
Q Consensus        87 ~-------------d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  152 (223)
                      .             .+-+.|+.++..+..+....++..+.-+... .-|..       +....+....-++.++.+..+.
T Consensus       102 FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~-------LSGGQQQR~aIARaLameP~vm  174 (256)
T COG4598         102 FNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAH-------LSGGQQQRVAIARALAMEPEVM  174 (256)
T ss_pred             cchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccc-------cCchHHHHHHHHHHHhcCCceE
Confidence            2             2235566666666677777777665332111 22221       2333445566677777777777


Q ss_pred             EEE--EccCCCCCHHHHHHHHHHHHHHHH
Q 027417          153 FME--TSALDSSNVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       153 ~~~--~Sa~~~~~i~~~~~~l~~~~~~~~  179 (223)
                      +|.  +||.+.+-+.+++..+...+.+-+
T Consensus       175 LFDEPTSALDPElVgEVLkv~~~LAeEgr  203 (256)
T COG4598         175 LFDEPTSALDPELVGEVLKVMQDLAEEGR  203 (256)
T ss_pred             eecCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence            664  899999999999988877665443

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.98  E-value=1.1e-05  Score=67.73  Aligned_cols=58  Identities=21%  Similarity=0.217  Sum_probs=44.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ   73 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   73 (223)
                      ...+.|.+||.|+|||||+||+|.+.+... ...|.|-+..-.++.+..   .+.|.|+||.
T Consensus       312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  312 KDVVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             CceeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            336999999999999999999999987643 334446666666666654   4559999993

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.97  E-value=6.2e-05  Score=55.73  Aligned_cols=83  Identities=17%  Similarity=0.087  Sum_probs=45.7

Q ss_pred             EEEEEEEeCCCchhhh----chhHhh--hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           62 EVKAQIWDTAGQERFR----AVTSAY--YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      .+.+.++|++|.....    ......  ....+.+++|+|......  . ..+...+.....   ..-+|.||.|.... 
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~-~~~~~~~~~~~~---~~~viltk~D~~~~-  154 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--A-VNQAKAFNEALG---ITGVILTKLDGDAR-  154 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--H-HHHHHHHHhhCC---CCEEEEECCcCCCC-
Confidence            3457789999964221    111111  134899999999865432  2 223333322222   35677899997642 


Q ss_pred             ccCHHHHHHHHHHcCCeEE
Q 027417          136 EVTTAEGKALAEAQGLFFM  154 (223)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~  154 (223)
                         ...+...+...++|+.
T Consensus       155 ---~g~~~~~~~~~~~p~~  170 (173)
T cd03115         155 ---GGAALSIRAVTGKPIK  170 (173)
T ss_pred             ---cchhhhhHHHHCcCeE
Confidence               2223336666677743

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.94  E-value=2.3e-05  Score=64.04  Aligned_cols=156  Identities=19%  Similarity=0.125  Sum_probs=95.3

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCccceeEeEEEEEEEC
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEF-------------------------------YPNSKSTIGVEFQTQKMDIN   59 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   59 (223)
                      ....++++++|+..+||||+-..++...-                               .....  .|-+.......+.
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~--kgKtvEvGrA~FE  153 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERD--KGKTVEVGRAYFE  153 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhh--ccceeeeeeEEEE
Confidence            45679999999999999998776643100                               00111  1222333333344


Q ss_pred             CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH---hhHHHHHH--HHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417           60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR---QTFDSIGR--WLNELHTHSDMNVVTILVGNKSDLKDA  134 (223)
Q Consensus        60 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~--~~~~i~~~~~~~~p~ivv~nK~Dl~~~  134 (223)
                      -....+++.|+||+..|-.....-..++|+-++|+++...   ..|+.--.  ....+... ..-...|+++||+|-...
T Consensus       154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtv  232 (501)
T KOG0459|consen  154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTV  232 (501)
T ss_pred             ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCcc
Confidence            4456788999999999988887777899999999988542   22433211  11112111 224667888999997642


Q ss_pred             --cccCHHH----HHHHHHHcC------CeEEEEccCCCCCHHHHHH
Q 027417          135 --REVTTAE----GKALAEAQG------LFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus       135 --~~~~~~~----~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  169 (223)
                        ..-.+++    ...|....+      ..|+++|..+|.++.+...
T Consensus       233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence              1112222    222333322      3489999999999987664

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.82  E-value=0.00041  Score=58.32  Aligned_cols=133  Identities=16%  Similarity=0.118  Sum_probs=70.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccce-----------------------eEeEEEEEE-------ECCEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIG-----------------------VEFQTQKMD-------INGKEV   63 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~-----------------------~~~~~~~~~-------~~~~~~   63 (223)
                      .-.|+++|+.|+||||++..|.+...........+                       .......-.       ..-...
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            45899999999999999998765321100000000                       000000000       000223


Q ss_pred             EEEEEeCCCchhhhc----hhHhhh--cCCCEEEEEEECCC-HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           64 KAQIWDTAGQERFRA----VTSAYY--RGAVGALLVYDISR-RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        64 ~~~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      .+.++||+|......    ....+.  ....-.++|+|.+. ...+..   ++..+..    -.+--+|.||.|...   
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~---~~~~f~~----~~~~~~I~TKlDEt~---  340 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE---VISAYQG----HGIHGCIITKVDEAA---  340 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH---HHHHhcC----CCCCEEEEEeeeCCC---
Confidence            567999999544221    122221  22445778888874 333333   3333221    123467899999653   


Q ss_pred             cCHHHHHHHHHHcCCeEEEEc
Q 027417          137 VTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~S  157 (223)
                       ..-.+..++...+.|+..++
T Consensus       341 -~~G~~l~~~~~~~lPi~yvt  360 (420)
T PRK14721        341 -SLGIALDAVIRRKLVLHYVT  360 (420)
T ss_pred             -CccHHHHHHHHhCCCEEEEE
Confidence             34445666777788866654

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.81  E-value=3.6e-05  Score=65.02  Aligned_cols=85  Identities=16%  Similarity=0.045  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCchhhhchh------HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           63 VKAQIWDTAGQERFRAVT------SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      ..+.|+||+|........      ......+|.+++|+|.+...   ........+....   ...-+|.||.|...   
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a---  246 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA---  246 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC---
Confidence            367899999955432211      11234688999999987742   2222223332211   12357889999643   


Q ss_pred             cCHHHHHHHHHHcCCeEEEEc
Q 027417          137 VTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~S  157 (223)
                       ..=.+..+....+.|+..++
T Consensus       247 -~~G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        247 -KGGGALSAVAETGAPIKFIG  266 (437)
T ss_pred             -cccHHHHHHHHHCcCEEEEe
Confidence             22334555666777754443

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.78  E-value=0.00042  Score=57.54  Aligned_cols=134  Identities=18%  Similarity=0.141  Sum_probs=70.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCc--------------cceeEeEEEEE---------EEC-CEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYP-------NSKS--------------TIGVEFQTQKM---------DIN-GKE   62 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~-------~~~~--------------~~~~~~~~~~~---------~~~-~~~   62 (223)
                      ...|+|+|+.||||||++..|.......       ..++              ..+.......-         ... ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            3689999999999999999885421100       0000              00111110000         000 013


Q ss_pred             EEEEEEeCCCchhhhch----hHhhh--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           63 VKAQIWDTAGQERFRAV----TSAYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      +.+.|+||+|.......    ....+  ...+.+++|+|.+...  ..+..++..+..    -.+--+|.||.|...   
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~idglI~TKLDET~---  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA---  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CCCCEEEEEcccCCC---
Confidence            57889999995432111    12222  2456788888875331  222333333332    123468899999653   


Q ss_pred             cCHHHHHHHHHHcCCeEEEEc
Q 027417          137 VTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~S  157 (223)
                       ..=.+..++...+.|+..++
T Consensus       392 -k~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        392 -SSGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             -CccHHHHHHHHHCcCEEEEe
Confidence             23445566677788854443

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.77  E-value=0.00093  Score=57.52  Aligned_cols=135  Identities=16%  Similarity=0.203  Sum_probs=70.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCC---------CCCc--------------cceeEeEEEEEE------E-CCEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYP---------NSKS--------------TIGVEFQTQKMD------I-NGKEV   63 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~---------~~~~--------------~~~~~~~~~~~~------~-~~~~~   63 (223)
                      .-.|+|+|+.|+||||++..|...-...         ..+.              ..+..+....-.      + .-..+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            4578999999999999998876421100         0000              001101000000      0 01246


Q ss_pred             EEEEEeCCCchhhhchhHh---hhc--CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027417           64 KAQIWDTAGQERFRAVTSA---YYR--GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT  138 (223)
Q Consensus        64 ~~~l~D~~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~  138 (223)
                      .+.|+||+|..........   .+.  .....++|++.+..  ...+...+..+..    ..+.-+|+||.|...    .
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~----~  499 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG----R  499 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc----c
Confidence            7889999995433221110   011  12245667776642  3333333333322    245679999999643    3


Q ss_pred             HHHHHHHHHHcCCeEEEEcc
Q 027417          139 TAEGKALAEAQGLFFMETSA  158 (223)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~Sa  158 (223)
                      .-.+..+....+.++..++.
T Consensus       500 lG~aLsv~~~~~LPI~yvt~  519 (559)
T PRK12727        500 FGSALSVVVDHQMPITWVTD  519 (559)
T ss_pred             hhHHHHHHHHhCCCEEEEeC
Confidence            45666677778888666553

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.76  E-value=0.00032  Score=55.91  Aligned_cols=88  Identities=18%  Similarity=0.164  Sum_probs=64.4

Q ss_pred             hcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027417           84 YRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS  162 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (223)
                      ..+.|-+|+++.+.+|+ +...+..++-.....   ++..|+++||+|+....+...++........+.+++.+|++++.
T Consensus        77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~  153 (301)
T COG1162          77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGD  153 (301)
T ss_pred             ccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcc
Confidence            34577778888888775 455566665554332   57788889999998654433345566677789999999999999


Q ss_pred             CHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTE  174 (223)
Q Consensus       163 ~i~~~~~~l~~~  174 (223)
                      ++.++.+.+..+
T Consensus       154 ~~~~l~~~l~~~  165 (301)
T COG1162         154 GLEELAELLAGK  165 (301)
T ss_pred             cHHHHHHHhcCC
Confidence            999999888544

>TIGR00959 ffh signal recognition particle protein

Probab=97.75  E-value=0.00025  Score=59.83  Aligned_cols=86  Identities=19%  Similarity=0.049  Sum_probs=49.1

Q ss_pred             EEEEEEEeCCCchhhhch-hH---h--hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           62 EVKAQIWDTAGQERFRAV-TS---A--YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~-~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      .+.+.|+||+|....... ..   .  ....++.+++|+|.....   ....+...+....   ...-+|.||.|...  
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~--  253 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDA--  253 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcc--
Confidence            356889999995432211 11   1  123578889999987542   3333333333222   12467799999542  


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEc
Q 027417          136 EVTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~S  157 (223)
                        ..-.+..++...++|+..+.
T Consensus       254 --~~G~~lsi~~~~~~PI~fi~  273 (428)
T TIGR00959       254 --RGGAALSVRSVTGKPIKFIG  273 (428)
T ss_pred             --cccHHHHHHHHHCcCEEEEe
Confidence              22236667777888855543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.75  E-value=0.00039  Score=53.21  Aligned_cols=62  Identities=26%  Similarity=0.182  Sum_probs=38.2

Q ss_pred             EEEEeC-CCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           65 AQIWDT-AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        65 ~~l~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                      +.++|| +|.+++.+-   ..+.+|.+|+|+|.+-. ++...++..+......  =.++.+|+||.|..
T Consensus       136 ~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg--~k~i~~V~NKv~e~  198 (255)
T COG3640         136 VVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYK-SLRTAERIKELAEELG--IKRIFVVLNKVDEE  198 (255)
T ss_pred             EEEEecccchhhhccc---cccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence            556666 455555432   34789999999999753 3333333332222221  27899999999954

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.71  E-value=0.00018  Score=51.90  Aligned_cols=58  Identities=19%  Similarity=0.161  Sum_probs=35.6

Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD  130 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  130 (223)
                      .+.+.|+||+|.....   ..++..+|-+|++...+-.+.+.-+. +  ....     ..-+++.||.|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k-~--~~~~-----~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK-A--GIME-----IADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh-h--hHhh-----hcCEEEEeCCC
Confidence            4678899998854322   34778899888888887333322211 1  1122     22378889987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.70  E-value=0.0011  Score=54.02  Aligned_cols=98  Identities=21%  Similarity=0.226  Sum_probs=56.6

Q ss_pred             EEEEEEeCCCchhhhchhHhhhc--------CCCEEEEEEECCCHhh-HHHHHH-HHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYR--------GAVGALLVYDISRRQT-FDSIGR-WLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s-~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                      +...++++.|......+...+..        ..|++|-|+|+.+-.. ...+.. ...++.      ..=++++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccCC
Confidence            45668899886555444443332        4677899999987443 222222 222222      2238999999999


Q ss_pred             CCcccCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHH
Q 027417          133 DAREVTTAEGKALAEAQ--GLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus       133 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      ++.+  .+..+......  .++++.++. ...+..+++.
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~  194 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELLD  194 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence            7543  34444444444  456888777 3344444443

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.68  E-value=3.9e-05  Score=62.64  Aligned_cols=57  Identities=25%  Similarity=0.383  Sum_probs=42.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG   72 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   72 (223)
                      .+.++|.|+|-|++||||+||+|..+..-.. ....|.+..-..+..+.   .+.|+|.||
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPg  306 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPG  306 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCc
Confidence            6789999999999999999999998765332 22335555555555543   566999999

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.67  E-value=0.00017  Score=42.49  Aligned_cols=45  Identities=24%  Similarity=0.194  Sum_probs=30.2

Q ss_pred             cCCCEEEEEEECCCH--hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 027417           85 RGAVGALLVYDISRR--QTFDSIGRWLNELHTHSDMNVVTILVGNKSD  130 (223)
Q Consensus        85 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  130 (223)
                      .-.+++++++|++..  .+.+.-...+..++.... ++|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            347899999999984  456666777788877765 699999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.66  E-value=0.0011  Score=54.99  Aligned_cols=133  Identities=15%  Similarity=0.195  Sum_probs=70.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccce---eEeEEE-----------------EEEEC----------CEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIG---VEFQTQ-----------------KMDIN----------GKEV   63 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~---~~~~~~-----------------~~~~~----------~~~~   63 (223)
                      .-.|+++||.||||||-+..|.............+   ++.+..                 .+-.+          -..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            56789999999999999887766543111111111   111110                 00000          1234


Q ss_pred             EEEEEeCCCchhhhchh----HhhhcC--CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027417           64 KAQIWDTAGQERFRAVT----SAYYRG--AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV  137 (223)
Q Consensus        64 ~~~l~D~~G~~~~~~~~----~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~  137 (223)
                      .+.|+||.|...++...    ..++..  ..-+.+|++++..  .+.+...+..+...    ..--+|.||.|...    
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~----~i~~~I~TKlDET~----  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF----PIDGLIFTKLDETT----  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC----CcceeEEEcccccC----
Confidence            68899999966554432    333332  3345566676653  33444444443322    11247789999653    


Q ss_pred             CHHHHHHHHHHcCCeEEEE
Q 027417          138 TTAEGKALAEAQGLFFMET  156 (223)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~  156 (223)
                      +.=..-.++.+.+.|+-.+
T Consensus       353 s~G~~~s~~~e~~~PV~Yv  371 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYV  371 (407)
T ss_pred             chhHHHHHHHHhCCCeEEE
Confidence            3334445556667764433

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.65  E-value=0.00046  Score=46.44  Aligned_cols=82  Identities=18%  Similarity=0.186  Sum_probs=49.2

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           17 VVLIG-DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        17 i~i~G-~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      |.+.| ..|+||||+...+...-.. ...+.       ..+..+ ..+.+.++|+|+....  .....+..+|.+|++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d-~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLD-PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCC-CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence            56677 5689999998766542211 11111       111111 1167789999985433  23366778999999998


Q ss_pred             CCCHhhHHHHHHHHH
Q 027417           96 ISRRQTFDSIGRWLN  110 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~  110 (223)
                      .+ ..++..+..+++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 445666555554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.65  E-value=0.004  Score=45.54  Aligned_cols=142  Identities=10%  Similarity=0.075  Sum_probs=96.1

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      +......|+++|..+.++..|.+++....-        ...   ..+.... .    +-+ |.  ..    ...-...|.
T Consensus        11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~--------~~~---l~Vh~a~-s----LPL-p~--e~----~~lRprIDl   67 (176)
T PF11111_consen   11 PELNTATILLVGTEEALLQQLAEAMLEEDK--------EFK---LKVHLAK-S----LPL-PS--EN----NNLRPRIDL   67 (176)
T ss_pred             CCcceeEEEEecccHHHHHHHHHHHHhhcc--------cee---EEEEEec-c----CCC-cc--cc----cCCCceeEE
Confidence            345578999999999999999999986211        111   1111100 0    111 10  01    111246899


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      ++|++|.....|++.++.-+..+....-.+ .+.++++-....+...+...++.+++..+++|++.+.-.+..+...+-.
T Consensus        68 IVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq  146 (176)
T PF11111_consen   68 IVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ  146 (176)
T ss_pred             EEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence            999999999999999988887774432223 3566666677666677899999999999999999998888766666665


Q ss_pred             HHHHHH
Q 027417          170 TVVTEI  175 (223)
Q Consensus       170 ~l~~~~  175 (223)
                      .|++.+
T Consensus       147 RLL~~l  152 (176)
T PF11111_consen  147 RLLRML  152 (176)
T ss_pred             HHHHHH
Confidence            555433

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.65  E-value=0.0012  Score=53.71  Aligned_cols=85  Identities=6%  Similarity=0.044  Sum_probs=47.7

Q ss_pred             EEEEEEeCCCchhhhchhHhhhc--------CCCEEEEEEECCCHhhH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYR--------GAVGALLVYDISRRQTF-DSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      ....++++.|......+...+..        ..+.+|.|+|+.+-... +.......++..      .=+|++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence            44568899997665555544321        25789999999763221 111111222221      2388999999886


Q ss_pred             CcccCHHHHHHHHHHcC--CeEEEEc
Q 027417          134 AREVTTAEGKALAEAQG--LFFMETS  157 (223)
Q Consensus       134 ~~~~~~~~~~~~~~~~~--~~~~~~S  157 (223)
                      +.    +...+..+..+  ++++.++
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV  186 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec
Confidence            32    34444444443  4566554

>PRK10867 signal recognition particle protein; Provisional

Probab=97.62  E-value=0.00048  Score=58.20  Aligned_cols=86  Identities=17%  Similarity=0.056  Sum_probs=47.7

Q ss_pred             EEEEEEEeCCCchhhhc-hhH---hh--hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           62 EVKAQIWDTAGQERFRA-VTS---AY--YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      .+.+.|+||+|...... +..   .+  ...++.+++|+|.....   .+......+....   ...-+|.||.|...  
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~--  254 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDA--  254 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcc--
Confidence            35688999999543211 111   11  12577789999987532   2223333333221   12357789999542  


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEc
Q 027417          136 EVTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~S  157 (223)
                        ..-.+.......++|+..++
T Consensus       255 --rgG~alsi~~~~~~PI~fig  274 (433)
T PRK10867        255 --RGGAALSIRAVTGKPIKFIG  274 (433)
T ss_pred             --cccHHHHHHHHHCcCEEEEe
Confidence              12235666777788855543

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.61  E-value=0.0006  Score=48.18  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      ...++|.|++|+|||+|++.+...-
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3568999999999999999988743

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.59  E-value=0.00033  Score=52.17  Aligned_cols=80  Identities=14%  Similarity=0.095  Sum_probs=43.4

Q ss_pred             EEEEEEeCCCchhhhch--h---HhhhcCCCEEEEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           63 VKAQIWDTAGQERFRAV--T---SAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~--~---~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      ....++++.|......+  .   ....-..+.+|.|+|+.+-....... .+..++. ..     =++++||+|+.+.. 
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~-~A-----DvIvlnK~D~~~~~-  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA-FA-----DVIVLNKIDLVSDE-  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC-T------SEEEEE-GGGHHHH-
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch-hc-----CEEEEeccccCChh-
Confidence            45668888885554444  1   11124578899999997753333332 2333332 22     38999999987643 


Q ss_pred             cCHHHHHHHHHHc
Q 027417          137 VTTAEGKALAEAQ  149 (223)
Q Consensus       137 ~~~~~~~~~~~~~  149 (223)
                      ...+..++..+..
T Consensus       158 ~~i~~~~~~ir~l  170 (178)
T PF02492_consen  158 QKIERVREMIREL  170 (178)
T ss_dssp             --HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            2224444444444

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.59  E-value=0.00013  Score=58.01  Aligned_cols=62  Identities=21%  Similarity=0.329  Sum_probs=39.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCccceeEeEEEE-EEECCEEEEEEEEeCCCc
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPN----SKSTIGVEFQTQK-MDINGKEVKAQIWDTAGQ   73 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~G~   73 (223)
                      .+...+|+|+|-||+|||||+|++........    ..+-.|++..... +.+.... .+.++||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            45679999999999999999998865322211    1122244444433 4444333 4779999994

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.58  E-value=0.00042  Score=49.45  Aligned_cols=107  Identities=16%  Similarity=0.134  Sum_probs=59.6

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECC
Q 027417           18 VLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS   97 (223)
Q Consensus        18 ~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   97 (223)
                      +.-|..|+|||++.-.+...-. .......-.+...   ......+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            3557899999998655543111 0000000011000   001111677899999743  333456788999999999986


Q ss_pred             CHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           98 RRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        98 ~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                      . .++......++.+.... ...++.+|.|+.+..
T Consensus        78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence            4 34444444444443332 245678999998744

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.56  E-value=0.00088  Score=56.71  Aligned_cols=86  Identities=15%  Similarity=0.127  Sum_probs=48.1

Q ss_pred             EEEEEEeCCCchhhh----chhHhhhc---CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           63 VKAQIWDTAGQERFR----AVTSAYYR---GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      +.+.|+||+|.....    .....++.   ...-+++|++.+-..  ..+...+..+...   + +--+|.||.|...  
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~--  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS--  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence            567899999964432    12222333   234567778875431  2222222222211   1 2368899999653  


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEcc
Q 027417          136 EVTTAEGKALAEAQGLFFMETSA  158 (223)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~Sa  158 (223)
                        ..-.+..+....+.|+..++.
T Consensus       372 --~~G~i~~~~~~~~lPv~yit~  392 (424)
T PRK05703        372 --SLGSILSLLIESGLPISYLTN  392 (424)
T ss_pred             --cccHHHHHHHHHCCCEEEEeC
Confidence              233567777888988666553

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.50  E-value=0.0015  Score=54.00  Aligned_cols=86  Identities=14%  Similarity=0.096  Sum_probs=47.0

Q ss_pred             EEEEEEeCCCchhhhch----hHhhh--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           63 VKAQIWDTAGQERFRAV----TSAYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      +.+.|+||+|.......    ...+.  ...+.+++|++...  ....+...+..+.   . -.+--+|.||.|...   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~---~-l~i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA---E-IPIDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC---c-CCCCEEEEEcccCCC---
Confidence            57889999996443221    11222  24466667776532  2223333333321   1 123468899999653   


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcc
Q 027417          137 VTTAEGKALAEAQGLFFMETSA  158 (223)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~Sa  158 (223)
                       ..=.+..++...+.|+..++.
T Consensus       357 -~~G~~Lsv~~~tglPIsylt~  377 (407)
T PRK12726        357 -RIGDLYTVMQETNLPVLYMTD  377 (407)
T ss_pred             -CccHHHHHHHHHCCCEEEEec
Confidence             234455667777888655543

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.49  E-value=0.0021  Score=46.07  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      .++|+|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            46899999999999999988753

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.49  E-value=0.0024  Score=57.39  Aligned_cols=135  Identities=14%  Similarity=0.071  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCccceeEeEE---------------EEEE-E-----------CCEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPN---SKSTIGVEFQT---------------QKMD-I-----------NGKEVK   64 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~---~~~~~~~~~~~---------------~~~~-~-----------~~~~~~   64 (223)
                      --|+|+|+.||||||.+..|.+......   .......+.+.               ..+. .           .-..+.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            3578999999999999998876431110   00000011000               0000 0           012335


Q ss_pred             EEEEeCCCchhhhch----hHhh--hcCCCEEEEEEECCC-HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027417           65 AQIWDTAGQERFRAV----TSAY--YRGAVGALLVYDISR-RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV  137 (223)
Q Consensus        65 ~~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~  137 (223)
                      +.|+||+|.......    ....  ....+-.++|+|.+. ...+..+..-+...   .. -.+-=+|.||.|...    
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~---~~-~~i~glIlTKLDEt~----  337 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHG---AG-EDVDGCIITKLDEAT----  337 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhc---cc-CCCCEEEEeccCCCC----
Confidence            789999994332211    1111  124556788999875 33444443333221   10 013467899999653    


Q ss_pred             CHHHHHHHHHHcCCeEEEEc
Q 027417          138 TTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~S  157 (223)
                      ..=.+..+....++|+..++
T Consensus       338 ~~G~iL~i~~~~~lPI~yit  357 (767)
T PRK14723        338 HLGPALDTVIRHRLPVHYVS  357 (767)
T ss_pred             CccHHHHHHHHHCCCeEEEe
Confidence            23445566677788866554

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.47  E-value=0.00011  Score=50.96  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999863

...

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.47  E-value=0.0014  Score=42.93  Aligned_cols=69  Identities=20%  Similarity=0.158  Sum_probs=43.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch-hHhhhcCCCEEEEEEE
Q 027417           17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV-TSAYYRGAVGALLVYD   95 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d   95 (223)
                      +++.|..|+||||+...+...-...      +...    ..++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~~v----~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKR------GKRV----LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC------CCeE----EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            6788999999999988776532211      1111    1112    6669999975432221 1455567899999998


Q ss_pred             CCCH
Q 027417           96 ISRR   99 (223)
Q Consensus        96 ~~~~   99 (223)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            8754

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.47  E-value=0.00013  Score=44.06  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..+|.|+.|||||||++++..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998764

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.46  E-value=0.0001  Score=54.86  Aligned_cols=23  Identities=26%  Similarity=0.680  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .+|+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999875

>PRK08118 topology modulation protein; Reviewed

Probab=97.43  E-value=0.00012  Score=53.89  Aligned_cols=23  Identities=35%  Similarity=0.590  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988764

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.43  E-value=0.0011  Score=53.04  Aligned_cols=105  Identities=16%  Similarity=0.263  Sum_probs=61.6

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch---------------
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE---------------   74 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------------   74 (223)
                      ....-..++|+|++|.|||++++++...... ..+.. +            ..+.+.++.+|...               
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-~~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPP-QSDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCC-CCCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            3445578999999999999999999874432 22211 1            11233344444311               


Q ss_pred             ---------hhhchhHhhhcCCCEEEEEEECCCH---hhHHHHHHHHHHHhhc-CCCCCcEEEEEeC
Q 027417           75 ---------RFRAVTSAYYRGAVGALLVYDISRR---QTFDSIGRWLNELHTH-SDMNVVTILVGNK  128 (223)
Q Consensus        75 ---------~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK  128 (223)
                               .........++...+=++++|--+.   .+....+..++.++.. ...++|+|.||+.
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence                     1122223455677777889996652   2344444555555444 2347999999874

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.41  E-value=0.0032  Score=52.89  Aligned_cols=141  Identities=19%  Similarity=0.194  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC-CCC-------CCCc--------------cceeEeEEEE-E-----EECCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDE-FYP-------NSKS--------------TIGVEFQTQK-M-----DINGKEVKAQ   66 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~-~~~-------~~~~--------------~~~~~~~~~~-~-----~~~~~~~~~~   66 (223)
                      .-++++|++||||||++..|.... ...       ..+.              ..+....... .     ......+.+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999998886421 100       0000              0011111000 0     0011245678


Q ss_pred             EEeCCCchhhh-ch---hHhhhc-----CCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           67 IWDTAGQERFR-AV---TSAYYR-----GAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        67 l~D~~G~~~~~-~~---~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      ++||+|..... ..   +..++.     ...-.++|+|.+... ....   .+..+..    --+--+|.||.|-..   
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~---~~~~f~~----~~~~glIlTKLDEt~---  373 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT---VLKAYES----LNYRRILLTKLDEAD---  373 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH---HHHHhcC----CCCCEEEEEcccCCC---
Confidence            99999954321 11   111221     234577888887643 3332   2222211    123468899999653   


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcc--CCCCCHHH
Q 027417          137 VTTAEGKALAEAQGLFFMETSA--LDSSNVTA  166 (223)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~  166 (223)
                       ..=.+..++...+.|+..++.  .=++++..
T Consensus       374 -~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~  404 (432)
T PRK12724        374 -FLGSFLELADTYSKSFTYLSVGQEVPFDILN  404 (432)
T ss_pred             -CccHHHHHHHHHCCCEEEEecCCCCCCCHHH
Confidence             233355666777888655543  33344443

>PRK07261 topology modulation protein; Provisional

Probab=97.39  E-value=0.00015  Score=53.69  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      +|+|+|++|||||||.+.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999988653

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.36  E-value=0.00015  Score=51.65  Aligned_cols=20  Identities=40%  Similarity=0.694  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      |+++|+||||||||++.|..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999884

...

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.34  E-value=0.004  Score=53.38  Aligned_cols=138  Identities=15%  Similarity=0.146  Sum_probs=69.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCC-C--CccceeEeEE---------------EEEE-E-----------CCEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPN-S--KSTIGVEFQT---------------QKMD-I-----------NGKEVK   64 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~-~--~~~~~~~~~~---------------~~~~-~-----------~~~~~~   64 (223)
                      --++++|+.||||||++..|.+...... .  ......+.+.               .... .           .-....
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d  336 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH  336 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence            4589999999999999998875321110 0  0000000000               0000 0           001234


Q ss_pred             EEEEeCCCchhhhch---hHhhhcC---CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027417           65 AQIWDTAGQERFRAV---TSAYYRG---AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT  138 (223)
Q Consensus        65 ~~l~D~~G~~~~~~~---~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~  138 (223)
                      ..++||+|.......   ....+..   ..-.++|+|.+...  ..+......+..    ....-+|+||.|...    .
T Consensus       337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet~----~  406 (484)
T PRK06995        337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEAA----S  406 (484)
T ss_pred             eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCcc----c
Confidence            679999994432211   1111111   22367888886532  222222222211    233467789999553    3


Q ss_pred             HHHHHHHHHHcCCeEEEEccCCCCCH
Q 027417          139 TAEGKALAEAQGLFFMETSALDSSNV  164 (223)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~Sa~~~~~i  164 (223)
                      .-.+..+....++|+..++.  |.+|
T Consensus       407 ~G~~l~i~~~~~lPI~yvt~--GQ~V  430 (484)
T PRK06995        407 LGGALDVVIRYKLPLHYVSN--GQRV  430 (484)
T ss_pred             chHHHHHHHHHCCCeEEEec--CCCC
Confidence            44556677778888665543  4444

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.31  E-value=0.0039  Score=52.11  Aligned_cols=134  Identities=12%  Similarity=0.070  Sum_probs=70.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCC--------------------ccceeEeEEEEEE-------ECCE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYP-----NSK--------------------STIGVEFQTQKMD-------INGK   61 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~-----~~~--------------------~~~~~~~~~~~~~-------~~~~   61 (223)
                      ...|+++|++|+||||.+..|.......     ...                    ...+..+......       -.-.
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            4578999999999999998775421100     000                    0001111110000       0012


Q ss_pred             EEEEEEEeCCCchhhhc----hhHhhhcC---CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417           62 EVKAQIWDTAGQERFRA----VTSAYYRG---AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA  134 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  134 (223)
                      .+.+.++||+|......    -....+..   ..-.++|+|++..  .+.+...+..+..    -.+--+|.||.|... 
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~----~~~~~~I~TKlDet~-  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP----FSYKTVIFTKLDETT-  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC----CCCCEEEEEeccCCC-
Confidence            45688999999544221    11122221   2257889998875  2233333333221    123468899999653 


Q ss_pred             cccCHHHHHHHHHHcCCeEEEEc
Q 027417          135 REVTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~S  157 (223)
                         ..=.+..++...+.|+..++
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yit  346 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYVT  346 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEEe
Confidence               23445556677788865554

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.30  E-value=0.00042  Score=52.17  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-++|+|+.||||||+++.+..
T Consensus         4 ya~lV~GpAgSGKSTyC~~~~~   25 (273)
T KOG1534|consen    4 YAQLVMGPAGSGKSTYCSSMYE   25 (273)
T ss_pred             eeEEEEccCCCCcchHHHHHHH
Confidence            4578999999999999998864

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.30  E-value=0.005  Score=48.93  Aligned_cols=134  Identities=18%  Similarity=0.159  Sum_probs=71.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCC-------CC--C------------ccceeEeEEEEEE---------E-CCEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYP-------NS--K------------STIGVEFQTQKMD---------I-NGKE   62 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~-------~~--~------------~~~~~~~~~~~~~---------~-~~~~   62 (223)
                      .-+++++|++|+||||++..+.......       ..  .            ...+.......-.         . ....
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence            3689999999999999988775421100       00  0            0011111110000         0 0124


Q ss_pred             EEEEEEeCCCchhhhc-h---hHhhh--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           63 VKAQIWDTAGQERFRA-V---TSAYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~-~---~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      +.+.++||+|...... .   +...+  ...+-+++|+|.+...  +.+..++..+..    -.+--+|.||.|...   
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~---  225 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA---  225 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCC---
Confidence            5788999999553211 1   11121  2456788999986421  222333333322    133468899999664   


Q ss_pred             cCHHHHHHHHHHcCCeEEEEc
Q 027417          137 VTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~S  157 (223)
                       ..-.+..++...+.|+..++
T Consensus       226 -~~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        226 -SSGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             -CccHHHHHHHHHCcCEEEEe
Confidence             23345566667788855544

>PRK01889 GTPase RsgA; Reviewed

Probab=97.29  E-value=0.00029  Score=58.34  Aligned_cols=25  Identities=40%  Similarity=0.586  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEF   39 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~   39 (223)
                      -+++|+|.+|+|||||++.|.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            4789999999999999999987543

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.25  E-value=0.00031  Score=43.66  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988864

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.24  E-value=0.0033  Score=46.75  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      =.++|+|+.|+|||||++.+.+..
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            367899999999999999888743

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.23  E-value=0.00034  Score=54.07  Aligned_cols=22  Identities=45%  Similarity=0.567  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027417           17 VVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~   38 (223)
                      |+|+|++|+|||||++.+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999887743

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.20  E-value=0.00022  Score=52.28  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999864

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.20  E-value=0.0004  Score=53.35  Aligned_cols=22  Identities=36%  Similarity=0.443  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -|+|+|++|||||||++-+-+-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            3789999999999999977663

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.0012  Score=54.22  Aligned_cols=97  Identities=15%  Similarity=0.128  Sum_probs=54.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---------------------ccceeEeEEEEE-------------EECC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK---------------------STIGVEFQTQKM-------------DING   60 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~-------------~~~~   60 (223)
                      --|+++|-.|+||||.+-.|....-...+.                     .-.++.++....             .+..
T Consensus       102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk  181 (483)
T KOG0780|consen  102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK  181 (483)
T ss_pred             cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence            457899999999999987764321101000                     000122222111             1123


Q ss_pred             EEEEEEEEeCCCchhh-hchhHh-----hhcCCCEEEEEEECCCHhhH-HHHHHHHHH
Q 027417           61 KEVKAQIWDTAGQERF-RAVTSA-----YYRGAVGALLVYDISRRQTF-DSIGRWLNE  111 (223)
Q Consensus        61 ~~~~~~l~D~~G~~~~-~~~~~~-----~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~  111 (223)
                      +.+.+.|.||+|.... ..+...     -.-.+|-+|+|.|.+-...- +..+.+-..
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~  239 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET  239 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence            5678999999994432 222221     12468999999999986553 333444443

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.16  E-value=0.00015  Score=59.31  Aligned_cols=84  Identities=17%  Similarity=0.196  Sum_probs=51.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh--hchhHhhhcCCC
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF--RAVTSAYYRGAV   88 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~~~~~~~~~~~d   88 (223)
                      +...|-|.++|.|++||||+||+|....+-.... ..|-+....++..-   ..+.|+|+||.--.  .+-....++   
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYItLm---krIfLIDcPGvVyps~dset~ivLk---  376 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIVLK---  376 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHHhh---
Confidence            3556999999999999999999998876543222 22322222222212   24569999994322  222333333   


Q ss_pred             EEEEEEECCCHhh
Q 027417           89 GALLVYDISRRQT  101 (223)
Q Consensus        89 ~~i~v~d~~~~~s  101 (223)
                      +++=|=.+.+++.
T Consensus       377 GvVRVenv~~pe~  389 (572)
T KOG2423|consen  377 GVVRVENVKNPED  389 (572)
T ss_pred             ceeeeeecCCHHH
Confidence            5566777777654

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.16  E-value=0.00023  Score=52.54  Aligned_cols=24  Identities=42%  Similarity=0.646  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      .-++|.||+|||||||+++|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457899999999999999999765

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.15  E-value=0.00038  Score=49.26  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|+|||||++.+.+.
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEEccCCCccccceeeeccc
Confidence            5789999999999999988874

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.15  E-value=0.0036  Score=52.90  Aligned_cols=53  Identities=19%  Similarity=0.157  Sum_probs=33.1

Q ss_pred             hhchhHhhhcCCCEEEEEEEC-CCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 027417           76 FRAVTSAYYRGAVGALLVYDI-SRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD  130 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  130 (223)
                      .-.+....+++++++  ++|- +.--+..++..++..+......++-+|+|-.|.+
T Consensus       148 RVEIlKaLyr~a~iL--ILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~  201 (501)
T COG3845         148 RVEILKALYRGARLL--ILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK  201 (501)
T ss_pred             HHHHHHHHhcCCCEE--EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence            444566677888855  4442 2223445566666666666666788888888766

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.14  E-value=0.004  Score=42.16  Aligned_cols=100  Identities=19%  Similarity=0.093  Sum_probs=54.9

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH
Q 027417           20 IGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR   99 (223)
Q Consensus        20 ~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   99 (223)
                      =+..|+||||+...|...-.........-.+....   ..   ..+.++|+|+....  .....+..+|.+|++.+.+. 
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~---~~---~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-   76 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ---FG---DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-   76 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC---CC---CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-
Confidence            34578999998765543211110111111111110   01   16679999975432  33456788999999887754 


Q ss_pred             hhHHHHHHHHHHHhhcCCC-CCcEEEEEeC
Q 027417          100 QTFDSIGRWLNELHTHSDM-NVVTILVGNK  128 (223)
Q Consensus       100 ~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK  128 (223)
                      .++..+..+++.+...... ...+.+|+|+
T Consensus        77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            4555666666666554332 3456677764

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK04195 replication factor C large subunit; Provisional

Probab=97.13  E-value=0.011  Score=51.21  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-.++|.|++|+||||+++.+...
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998763

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.12  E-value=0.0024  Score=45.07  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      --|++.|+.|+|||||++.+...
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            35889999999999999998865

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.10  E-value=0.0071  Score=44.88  Aligned_cols=86  Identities=22%  Similarity=0.204  Sum_probs=60.0

Q ss_pred             EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH
Q 027417           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTA  140 (223)
Q Consensus        61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  140 (223)
                      ..+.+.++|+|+....  .....+..+|.+++++..+. .+...+..+++.+...   +.|+.+|+|++|....   ..+
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            4567889999965322  33456688999999999874 3555666666665543   4678899999996532   345


Q ss_pred             HHHHHHHHcCCeEEE
Q 027417          141 EGKALAEAQGLFFME  155 (223)
Q Consensus       141 ~~~~~~~~~~~~~~~  155 (223)
                      ++.++.+..+++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            677788888887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK06217 hypothetical protein; Validated

Probab=97.08  E-value=0.00049  Score=51.48  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .+|+|+|.+|||||||.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988764

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.07  E-value=0.00046  Score=51.77  Aligned_cols=23  Identities=13%  Similarity=0.231  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .=|+|+|++|||||||+++|...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            45899999999999999999875

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.06  E-value=0.00054  Score=47.91  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |+|.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999988864

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.06  E-value=0.00048  Score=47.92  Aligned_cols=21  Identities=19%  Similarity=0.341  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988764

...

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.05  E-value=0.011  Score=48.60  Aligned_cols=99  Identities=20%  Similarity=0.223  Sum_probs=53.5

Q ss_pred             EEEEEEeCCCchhhhchhHhhh-------cCCCEEEEEEECCCHhh--H-------H-------------HHHH-HHHHH
Q 027417           63 VKAQIWDTAGQERFRAVTSAYY-------RGAVGALLVYDISRRQT--F-------D-------------SIGR-WLNEL  112 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~-------~-------------~~~~-~~~~i  112 (223)
                      ....++++.|......+...+.       -..|++|.|+|+.+-..  +       .             .+.. +..++
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            3456889999666555544431       24678999999975321  0       0             0111 12222


Q ss_pred             hhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cC--CeEEEEccCCCCCHHHHHHH
Q 027417          113 HTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-QG--LFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus       113 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~--~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      .      ..=+|++||+|+..+.+  .+..++..+. +.  +++++++ ........+|..
T Consensus       173 ~------~AD~IvlnK~Dl~~~~~--l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~~  224 (341)
T TIGR02475       173 A------CADLVILNKADLLDAAG--LARVRAEIAAELPRAVKIVEAS-HGEVDARVLLGL  224 (341)
T ss_pred             H------hCCEEEEeccccCCHHH--HHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhCC
Confidence            2      22389999999986433  2334444444 32  2465554 333556666553

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>TIGR00235 udk uridine kinase

Probab=97.05  E-value=0.00069  Score=51.72  Aligned_cols=27  Identities=15%  Similarity=0.175  Sum_probs=22.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ++...-|+|+|++|||||||++.|.+.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            344567999999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.04  E-value=0.00061  Score=47.67  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEF   39 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~   39 (223)
                      -.++|+|++|+||||++..+.....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            4689999999999999999987544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK03839 putative kinase; Provisional

Probab=97.01  E-value=0.00062  Score=50.70  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      +|+|+|.|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988654

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.01  E-value=0.00064  Score=50.99  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .|+|+|++|||||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999664

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.01  E-value=0.00071  Score=51.65  Aligned_cols=26  Identities=38%  Similarity=0.501  Sum_probs=21.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ....-|+|+|++|||||||++.|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            34566889999999999999999753

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.01  E-value=0.00063  Score=48.39  Aligned_cols=21  Identities=52%  Similarity=0.784  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |+|+|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.00  E-value=0.00059  Score=52.34  Aligned_cols=21  Identities=43%  Similarity=0.604  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -|+|+|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            479999999999999999887

>PRK14530 adenylate kinase; Provisional

Probab=96.98  E-value=0.00067  Score=52.09  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=0.00039  Score=53.88  Aligned_cols=147  Identities=17%  Similarity=0.237  Sum_probs=81.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-EEEEEEEEeCCCchhhhchhHhhhc----
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYR----   85 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~----   85 (223)
                      ......|++.|+.+  +|++|++.+.+.-. ...++...++......-.+ ..-...+|+.+|......+..--+.    
T Consensus        42 ~~~E~~I~~~Gn~~--~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l  118 (363)
T KOG3929|consen   42 EKFEFFIGSKGNGG--KTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL  118 (363)
T ss_pred             ccceeEEEEecCCc--eeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence            35567888998874  58999988765432 3344545554444332222 2223569999986665544443332    


Q ss_pred             CCCEEEEEEECCCHhhH-HHHHHHHHHHh--------------------------h-----------cCCCCCcEEEEEe
Q 027417           86 GAVGALLVYDISRRQTF-DSIGRWLNELH--------------------------T-----------HSDMNVVTILVGN  127 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~--------------------------~-----------~~~~~~p~ivv~n  127 (223)
                      ..-.+|+++|++++..+ ..++..+..++                          +           ..+..+||++|+.
T Consensus       119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs  198 (363)
T KOG3929|consen  119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS  198 (363)
T ss_pred             hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence            23357899999997542 22222221111                          0           1123589999999


Q ss_pred             CCCCCCC-----cccCHHHHHHHHHHcCCeEEEEccCC
Q 027417          128 KSDLKDA-----REVTTAEGKALAEAQGLFFMETSALD  160 (223)
Q Consensus       128 K~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (223)
                      |.|.-..     +.....-.+.++..+|..+...|++-
T Consensus       199 KYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskM  236 (363)
T KOG3929|consen  199 KYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKM  236 (363)
T ss_pred             chhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence            9996432     11222233444556666555556554

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.97  E-value=0.00066  Score=50.48  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.95  E-value=0.025  Score=41.71  Aligned_cols=84  Identities=14%  Similarity=-0.010  Sum_probs=50.6

Q ss_pred             EEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 027417           64 KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK  143 (223)
Q Consensus        64 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  143 (223)
                      .+.++|+|+....  .....+..+|.+|++++.+.. ++..+..+++.+....  .....++.|+.+....  ...+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHH
Confidence            5779999975332  244556889999999988653 4444555555554421  2346688999986532  1222234


Q ss_pred             HHHHHcCCeEE
Q 027417          144 ALAEAQGLFFM  154 (223)
Q Consensus       144 ~~~~~~~~~~~  154 (223)
                      .+.+..+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            45555676654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.95  E-value=0.00075  Score=45.65  Aligned_cols=20  Identities=35%  Similarity=0.647  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027417           16 KVVLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~   35 (223)
                      -++|+|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            47999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.95  E-value=0.009  Score=45.28  Aligned_cols=21  Identities=33%  Similarity=0.446  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |+|+|++||||||+++.+.+.
T Consensus         4 ilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK10646 ADP-binding protein; Provisional

Probab=96.93  E-value=0.0073  Score=43.61  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -|++-|+-|+|||||++.+...
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~   51 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQA   51 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999998754

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.92  E-value=0.00084  Score=50.35  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-.++|+|++|||||||++.+.+.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            357899999999999999999874

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.92  E-value=0.00084  Score=49.62  Aligned_cols=22  Identities=41%  Similarity=0.489  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      =.|+|+|++|+|||||+|-+.+
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHh
Confidence            4689999999999999997766

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.91  E-value=0.00086  Score=52.09  Aligned_cols=26  Identities=31%  Similarity=0.512  Sum_probs=22.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      +..++++|+|++|||||+|+..|+..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45689999999999999999888764

This is thought to be an ATPase involved in viral DNA packaging [].

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.91  E-value=0.0009  Score=47.80  Aligned_cols=22  Identities=23%  Similarity=0.527  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .|+|+|+.|||||||++.|...
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998864

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.90  E-value=0.0008  Score=50.27  Aligned_cols=22  Identities=14%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-|+|+|++||||||+++.|..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.90  E-value=0.00075  Score=48.05  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=22.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...+||+|.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            5678999999999999999998874

>PRK13949 shikimate kinase; Provisional

Probab=96.90  E-value=0.00091  Score=49.40  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      +|+|+|++||||||+.+.|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998765

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.90  E-value=0.00089  Score=47.54  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .|+|+|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988753

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.88  E-value=0.00068  Score=51.88  Aligned_cols=67  Identities=21%  Similarity=0.168  Sum_probs=35.3

Q ss_pred             EEEEeCCCchhhhc----h--hHhhhcCCCEEEEEEECC------CHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           65 AQIWDTAGQERFRA----V--TSAYYRGAVGALLVYDIS------RRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        65 ~~l~D~~G~~~~~~----~--~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                      ..++|+||+-+.-.    +  ....++..|.=++++.+.      +|..|-+  ..+-.+..-.....|-|=|..|+|+.
T Consensus        99 Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~Dl~  176 (290)
T KOG1533|consen   99 YVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKADLL  176 (290)
T ss_pred             EEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhHHH
Confidence            44999999544221    1  112233455545555443      4554433  22222222223367888889999975


Q ss_pred             C
Q 027417          133 D  133 (223)
Q Consensus       133 ~  133 (223)
                      .
T Consensus       177 ~  177 (290)
T KOG1533|consen  177 K  177 (290)
T ss_pred             H
Confidence            3

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.88  E-value=0.001  Score=54.16  Aligned_cols=22  Identities=55%  Similarity=0.643  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027417           17 VVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~   38 (223)
                      ++++||+|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5799999999999999988754

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=96.87  E-value=0.012  Score=49.46  Aligned_cols=24  Identities=29%  Similarity=0.477  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-+|+|+|+.|+|||||+.-|++.
T Consensus       613 dSRiaIVGPNGVGKSTlLkLL~Gk  636 (807)
T KOG0066|consen  613 DSRIAIVGPNGVGKSTLLKLLIGK  636 (807)
T ss_pred             cceeEEECCCCccHHHHHHHHhcC
Confidence            458999999999999999988763

>PRK14532 adenylate kinase; Provisional

Probab=96.87  E-value=0.00096  Score=50.03  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      +|+|+|+|||||||+...|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998864

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.87  E-value=0.00087  Score=52.53  Aligned_cols=21  Identities=33%  Similarity=0.412  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      ++|+|+.|||||||++.+.+-
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            589999999999999999873

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.87  E-value=0.00087  Score=50.71  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.87  E-value=0.00092  Score=49.69  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4789999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=96.86  E-value=0.006  Score=48.48  Aligned_cols=99  Identities=15%  Similarity=0.248  Sum_probs=61.7

Q ss_pred             cCCCEEEEEEECCCH-----h--hHH----HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-----ccCHHHHHHHHHH
Q 027417           85 RGAVGALLVYDISRR-----Q--TFD----SIGRWLNELHTHSDMNVVTILVGNKSDLKDAR-----EVTTAEGKALAEA  148 (223)
Q Consensus        85 ~~~d~~i~v~d~~~~-----~--s~~----~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~  148 (223)
                      ...|++|+++|+.+-     +  .+.    .++.-+.++........||.+|+||+|+...-     ..+.++.   .+-
T Consensus        24 ~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r---~q~  100 (266)
T PF14331_consen   24 QPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEER---EQV  100 (266)
T ss_pred             CCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHH---hCC
Confidence            468999999998752     1  112    23445555666677789999999999988641     1222221   123


Q ss_pred             cCCeEEEEccCCCCC---HHHHHHHHHHHHHHHHhhhhhhh
Q 027417          149 QGLFFMETSALDSSN---VTAAFQTVVTEIYNILSRKVMIS  186 (223)
Q Consensus       149 ~~~~~~~~Sa~~~~~---i~~~~~~l~~~~~~~~~~~~~~~  186 (223)
                      +|+.+-.-....+..   +++.|+.+...+..++...+..+
T Consensus       101 lG~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~l~~~  141 (266)
T PF14331_consen  101 LGFTFPYDEDADGDAWAWFDEEFDELVARLNARVLERLAQE  141 (266)
T ss_pred             cccccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455433333344444   88888888888877777665433

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.85  E-value=0.0011  Score=50.54  Aligned_cols=25  Identities=16%  Similarity=0.267  Sum_probs=22.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ..+.|+|.|++|||||||++.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999988864

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.84  E-value=0.0086  Score=52.00  Aligned_cols=55  Identities=7%  Similarity=0.140  Sum_probs=33.7

Q ss_pred             cEEEEEeCCCCCCC-ccc-----CH--HHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          121 VTILVGNKSDLKDA-REV-----TT--AEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       121 p~ivv~nK~Dl~~~-~~~-----~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      |+|+|++=+|.... ...     ..  -...++....++..+...+....-+...+..|+..-
T Consensus       167 PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E  229 (519)
T PF03215_consen  167 PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKE  229 (519)
T ss_pred             CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHH
Confidence            99999996653321 111     11  123455566777778877777777777777766543

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.82  E-value=0.015  Score=46.74  Aligned_cols=74  Identities=24%  Similarity=0.288  Sum_probs=42.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhc--CCCEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYR--GAVGALLV   93 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~~i~v   93 (223)
                      .|+|.|.+||||||+++.|-..          |.      .          .+|-....-+..+......  ..+.+.++
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~~~----------g~------~----------~~d~~~~~L~~~l~~~~~~~~~~~~~av~   61 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALEDL----------GY------Y----------CVDNLPPSLLPKLVELLAQSGGIRKVAVV   61 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHHHc----------CC------e----------EECCcCHHHHHHHHHHHHhcCCCCCeEEE
Confidence            6899999999999999988421          11      0          1122222222223222222  23557788


Q ss_pred             EECCCHhhHHHHHHHHHHHhhc
Q 027417           94 YDISRRQTFDSIGRWLNELHTH  115 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~  115 (223)
                      +|+.+...+......+..+...
T Consensus        62 iD~r~~~~~~~~~~~~~~L~~~   83 (288)
T PRK05416         62 IDVRSRPFFDDLPEALDELRER   83 (288)
T ss_pred             EccCchhhHHHHHHHHHHHHHc
Confidence            8888765445555566665543

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.82  E-value=0.0012  Score=49.12  Aligned_cols=21  Identities=38%  Similarity=0.373  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027417           15 FKVVLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~   35 (223)
                      -.++|+|+.|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            468999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.82  E-value=0.0063  Score=43.50  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .--|++-|+-|+|||||.+.+..+
T Consensus        25 g~Vv~L~GdLGAGKTtf~rgi~~~   48 (149)
T COG0802          25 GDVVLLSGDLGAGKTTLVRGIAKG   48 (149)
T ss_pred             CCEEEEEcCCcCChHHHHHHHHHH
Confidence            345889999999999999988754

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.80  E-value=0.0012  Score=50.78  Aligned_cols=22  Identities=36%  Similarity=0.440  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|+|||||++.+.+.
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            5789999999999999999875

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PLN03025 replication factor C subunit; Provisional

Probab=96.79  E-value=0.019  Score=46.86  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ..+++.|++|+||||++..+...
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~   57 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHE   57 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999987653

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.79  E-value=0.0011  Score=50.30  Aligned_cols=21  Identities=48%  Similarity=0.600  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      .+++||+|+|||||++.|-..
T Consensus        36 TAlIGPSGcGKST~LR~lNRm   56 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNRM   56 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHhh
Confidence            489999999999999988653

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.79  E-value=0.01  Score=48.85  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=22.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ...+|+|.|++|||||||+++|++.
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~  185 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISA  185 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcc
Confidence            3578999999999999999999874

>PRK00625 shikimate kinase; Provisional

Probab=96.79  E-value=0.0012  Score=48.91  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      +|+|+|.+||||||+.+.|..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-64
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		7e-64
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-63
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		5e-63
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-62
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-62
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-62
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		9e-57
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-56
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-56
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-56
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-52
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-48
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		5e-48
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-45
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-45
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-45
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-44
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-44
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		7e-44
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		9e-44
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-43
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-43
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-43
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-43
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-43
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-43
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-43
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-43
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-43
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-43
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		7e-43
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		8e-43
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-42
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-42
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-42
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-42
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-42
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		4e-42
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-41
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		3e-41
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		8e-41
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-40
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-40
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-40
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-39
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-38
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-38
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		4e-38
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		5e-38
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		7e-38
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-37
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		4e-35
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		6e-35
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		6e-35
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		6e-35
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		6e-35
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		7e-35
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		7e-35
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-34
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-34
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-34
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-34
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-34
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-34
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		3e-34
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		3e-34
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-34
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		5e-34
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-32
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		1e-32
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-32
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-32
4fmc_F	117	Espg-Rab1 Complex Length = 117		5e-32
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		5e-32
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		6e-32
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		6e-32
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		9e-32
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-31
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-31
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-31
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		4e-31
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		6e-31
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		8e-31
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-30
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-30
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		4e-30
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		5e-30
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-30
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		6e-30
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		7e-30
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-29
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-29
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-29
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-27
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		4e-27
1vg1_A	185	Gdp-bound Rab7 Length = 185		6e-27
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		7e-27
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-26
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		4e-26
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-25
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		6e-23
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		7e-23
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		7e-23
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		2e-22
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		6e-22
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-20
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-20
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		7e-20
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		4e-19
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		9e-19
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-18
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-18
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		3e-18
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		3e-18
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		3e-18
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		3e-18
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-18
1byu_A	216	Canine Gdp-Ran Length = 216		3e-18
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		3e-18
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		4e-18
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		6e-18
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-18
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		8e-18
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		9e-18
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		9e-18
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-17
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-17
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-17
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-17
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-17
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-17
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		3e-17
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-17
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		4e-17
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		5e-17
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		6e-17
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		7e-17
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		8e-17
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-16
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-16
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-16
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		3e-16
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-16
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		5e-16
1s1c_A	183	Crystal Structure Of The Complex Between The Human		1e-15
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		1e-15
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-15
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-15
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-15
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-15
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-15
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-15
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-15
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-15
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		3e-15
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		3e-15
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		3e-15
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-15
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-15
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		5e-15
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		7e-15
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		7e-15
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		7e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		9e-15
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-14
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-14
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-14
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-14
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-14
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-14
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-14
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-14
6q21_A	171	Molecular Switch For Signal Transduction: Structura		3e-14
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		3e-14
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-14
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		3e-14
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-14
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		3e-14
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		3e-14
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-14
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-14
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		3e-14
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		3e-14
1wq1_R	166	Ras-Rasgap Complex Length = 166		3e-14
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-14
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		4e-14
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		4e-14
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		5e-14
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		5e-14
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		5e-14
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		6e-14
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		7e-14
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		8e-14
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		9e-14
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		9e-14
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		9e-14
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		9e-14
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		9e-14
1mh1_A	186	Small G-Protein Length = 186		9e-14
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		9e-14
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-13
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-13
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-13
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-13
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-13
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		1e-13
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		1e-13
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-13
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-13
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-13
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-13
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-13
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-13
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		3e-13
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-13
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		3e-13
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-13
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		3e-13
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		3e-13
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		4e-13
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		4e-13
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		4e-13
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		4e-13
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		5e-13
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		5e-13
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		5e-13
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		6e-13
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		9e-13
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-12
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		1e-12
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-12
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-12
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-12
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-12
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-12
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-12
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-12
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-12
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-12
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-12
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-12
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		3e-12
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		3e-12
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		5e-12
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		7e-12
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		8e-12
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		8e-12
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		8e-12
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		9e-12
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-11
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		1e-11
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-11
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-11
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-11
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-11
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		3e-11
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		4e-11
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		5e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-10
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-10
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		3e-10
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		3e-10
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		5e-10
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-09
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-08
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		2e-08
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-08
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		3e-08
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		3e-08
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		3e-08
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		3e-08
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		3e-08
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		3e-08
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		3e-08
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-08
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		3e-08
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-08
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-08
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		3e-08
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-08
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		3e-08
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-08
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		3e-08
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		3e-08
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		3e-08
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		4e-08
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		5e-08
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		8e-08
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		8e-08
2kb0_A	178	Cdc42(T35a) Length = 178		1e-07
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-07
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		2e-07
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		2e-07
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		2e-07
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-07
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		3e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-07
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		6e-07
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		7e-07
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		8e-07
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		1e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-06
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		5e-06
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		6e-06
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		6e-06
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-06
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		6e-06
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-06
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		7e-06
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		7e-06
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		1e-05
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		2e-05
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		2e-05
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		2e-05
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		3e-05
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		3e-05
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		3e-05
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		4e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		4e-05
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		4e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		5e-05
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		8e-05
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		8e-05
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		2e-04
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		2e-04
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		4e-04
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		5e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		6e-04
3dpu_A	535	Roccor Domain Tandem Of Rab Family Protein (Roco) L		9e-04

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 138/167 (82%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTA
Sbjct: 18  DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 77
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL
Sbjct: 78  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 137
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178
           +  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY I
Sbjct: 138 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  239 bits (611), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 113/165 (68%), Positives = 137/165 (83%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTA
Sbjct: 27  DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 86
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL
Sbjct: 87  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 146
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           +  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY
Sbjct: 147 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/167 (67%), Positives = 137/167 (82%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTA
Sbjct: 6   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 65
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           G ER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL
Sbjct: 66  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178
           +  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY I
Sbjct: 126 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  236 bits (603), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 113/169 (66%), Positives = 137/169 (81%)
Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
           D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQI
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 68  WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127
           WDTAG ER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGN
Sbjct: 83  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           KSDL+  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/165 (67%), Positives = 135/165 (81%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           G ER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V  LVGNKSDL
Sbjct: 63  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 122
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           +  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY
Sbjct: 123 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  235 bits (600), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/171 (64%), Positives = 138/171 (80%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQER+R +TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
           +  R V T E +A AE   L F+ETSALDS+NV  AF+ ++TEIY I+S+K
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 173

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  235 bits (600), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/169 (66%), Positives = 136/169 (80%)
Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
           D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQI
Sbjct: 5   DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 68  WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127
           WDTAG ER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V  LVGN
Sbjct: 65  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           KSDL+  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  216 bits (549), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 103/172 (59%), Positives = 134/172 (77%), Gaps = 1/172 (0%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDT 70
           DYLFK+VLIGDS VGKSNLL+RF RDEF   SKSTIGVEF T+ + + N K +KAQIWDT
Sbjct: 5   DYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDT 64
Query: 71  AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
           AGQER+RA+TSAYYRGAVGALLVYDI+++ +F++I +WL EL  ++D N+V +LVGNKSD
Sbjct: 65  AGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSD 124
Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
           LK  R +   +    A+ + L F+ETSAL+++NV  AF  ++ EIYN+  +K
Sbjct: 125 LKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKK 176

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  216 bits (549), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 103/174 (59%), Positives = 136/174 (78%), Gaps = 2/174 (1%)
Query: 11  EDY--LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
           EDY  +FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    VKAQIW
Sbjct: 5   EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 69  DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
           DTAG ER+RA+TSAYYRGAVGALLV+D+++ QT+  + RWL EL+ H++  +V +LVGNK
Sbjct: 65  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 124
Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
           SDL  AREV T E +  AE  GL F+ETSALDS+NV  AF+TV+ EI+  +S++
Sbjct: 125 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  216 bits (549), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 103/175 (58%), Positives = 137/175 (78%), Gaps = 2/175 (1%)
Query: 10  AEDY--LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
           +EDY  +FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    VKAQI
Sbjct: 19  SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78
Query: 68  WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127
           WDTAG ER+RA+TSAYYRGAVGALLV+D+++ QT+  + RWL EL+ H++  +V +LVGN
Sbjct: 79  WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138
Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
           KSDL  AREV T E +  AE  GL F+ETSALDS+NV  AF+TV+ EI+  +S++
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  215 bits (548), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/206 (53%), Positives = 142/206 (68%), Gaps = 6/206 (2%)
Query: 5   SEEDRAEDY--LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKE 62
           S ED   DY  LFK+VLIGDS VGKSNLL+RF ++EF  +SKSTIGVEF T+ ++I GK 
Sbjct: 2   SSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61
Query: 63  VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVT 122
           +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIS+  ++++   WL+EL  ++D NV  
Sbjct: 62  IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAV 121
Query: 123 ILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
            L+GNKSDL   R V T E K  A+   L F ETSAL+S NV  AF+ ++  IY  +S+ 
Sbjct: 122 GLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKH 181
Query: 183 VM----ISQELKQKDSSSFNGKTVVL 204
            M     S       +S+ NG T+ L
Sbjct: 182 QMDLGDSSANGNANGASAPNGPTISL 207

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 125/170 (73%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK+VLIGDS VGKSNLL+RF  DEF   SKSTIGVEF T+ +++  K++KAQIWDTA
Sbjct: 8   DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTA 67
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           G ER+RA+TSAYYRGAVGAL+VYDIS+  ++++   WL EL  ++D NV   L+GNKSDL
Sbjct: 68  GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL 127
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSR 181
              R V T E K  A    + F ETSAL+S NV  AF+ ++  I+ ++S+
Sbjct: 128 AHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/164 (55%), Positives = 114/164 (69%)
Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAG
Sbjct: 9   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
           QE FR++T +YYRGA GALLVYDI+RR TF+ +  WL +   HS+ N+V +L+GNKSDL+
Sbjct: 69  QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
             REV   EG+A A   GL FMETSA  +SNV  AF     EIY
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  187 bits (474), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 114/164 (69%)
Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + ++I+GK++K QIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
           QE FR++T +YYRGA GALLVYDI+RR+TF+ +  WL +   HS  N+V +L+GNKSDL+
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
             R+V   EG+A A   GL FMETSA  + NV  AF     EIY
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 183

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 131/189 (69%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIG+S VGKS LL RF+ D +  +  STIGV+F+ + ++++GK VK QIWDTA
Sbjct: 6   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRG+ G ++VYD++ +++F+ +  WL E+  ++   V+ +LVGNK DL
Sbjct: 66  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQ 191
           KD R V     K  A+A  + F+ETSALDS+NV  AF T+  +I   +S++ +     K+
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 185
Query: 192 KDSSSFNGK 200
           +D  + N K
Sbjct: 186 EDKGNVNLK 194

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  179 bits (453), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 131/189 (69%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIG+S VGKS LL RF+ D +  +  STIGV+F+ + ++++GK VK QIWDTA
Sbjct: 6   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRG+ G ++VYD++ +++F+ +  WL E+  ++   V+ +LVGNK DL
Sbjct: 66  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQ 191
           KD R V     K  A+A  + F+ETSALDS+NV  AF T+  +I   +S++ +     K+
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 185
Query: 192 KDSSSFNGK 200
           +D  + N K
Sbjct: 186 EDKGNVNLK 194

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 119/164 (72%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + + +  K VK QIWDTA
Sbjct: 7   DYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTA 66
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRGA G ++VYD++ R +FD++ +W+ E+  ++  NV  +LVGNK DL
Sbjct: 67  GQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDL 126
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
              R VT+ EG+ LA++ G+ F+ETSA ++ NV  AF T+  EI
Sbjct: 127 VSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 112/164 (68%)
Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           Y+FK ++IGD  VGKS LL +F   +F  +   TIGVEF T+ ++++G+++K QIWDTAG
Sbjct: 14  YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
           QERFRAVT +YYRGA GAL+VYDI+RR T++ +  WL +    ++ N V IL+GNK+DL+
Sbjct: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
             R+VT  E K  AE  GL F+E SA    NV  AF     +IY
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 119/164 (72%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIG+S VGKS LL RF+ D +  +  STIGV+F+ + ++++GK VK QIWDTA
Sbjct: 19  DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 78
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRG+ G ++VYD++ +++F+ +  WL E+  ++   V+ +LVGNK DL
Sbjct: 79  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 138
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           KD R V     K  A+A  + F+ETSALDS+NV  AF T+  +I
Sbjct: 139 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  173 bits (439), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 111/164 (67%)
Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           Y+FK ++IGD  VGKS LL +F   +F  +   TIGVEF T+ ++++G+++K QIWDTAG
Sbjct: 29  YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 88
Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
           Q RFRAVT +YYRGA GAL+VYDI+RR T++ +  WL +    ++ N V IL+GNK+DL+
Sbjct: 89  QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 148
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
             R+VT  E K  AE  GL F+E SA    NV  AF     +IY
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  172 bits (437), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Query: 6   EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKA 65
           + D   D+LFK+VL+GD++VGK+ ++ RF    F     STIGV+F  + ++I GK VK 
Sbjct: 21  DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKL 80
Query: 66  QIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV 125
           QIWDTAGQERFR +T +YYR A GA+L YDI++R +F S+  W+ ++  ++  N+V +L+
Sbjct: 81  QIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI 140
Query: 126 GNKSDLKDAREVTTAEGKALAEAQGLFF-METSALDSSNVTAAFQTVVTEI 175
           GNKSDL + REV+ AE ++LAE   +   +ETSA DSSNV  AF  V TE+
Sbjct: 141 GNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 120/171 (70%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGK+ +L RF+ D F     STIG++F+ + ++++GK +K QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +T+AYYRGA+G +LVYDI+  ++FD+I  W+  +  H+  +V  +++GNK D+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
            D R+V+   G+ LA   G+ FMETSA  + NV  AF T+  +I   + +K
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 110/166 (66%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D+LFK ++IG +  GKS LL +F  ++F  +S  TIGVEF ++ +++ GK VK QIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR+VT +YYRGA GALLVYDI+ R+T++S+  WL +  T +  N+V IL GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
              REVT  E    A+   L F+ETSAL   NV  AF      I N
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 117/160 (73%), Gaps = 1/160 (0%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D + K++LIGDS VGKS LL RF  D+F P+  +TIG++F+ + +DINGK+VK QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +T+AYYRGA+G +LVYDI+  +TF +I +W   ++ H++     +LVGNKSD+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
            + R VT  +G+ALA+  G+ F+E+SA +  NV   F T+
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/173 (47%), Positives = 123/173 (71%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 7   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRGA G ++VYD++ ++++ ++ +WL E+  ++  NV  +LVGNKSDL
Sbjct: 67  GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVM 184
              + V     K  A++ G+ F+ETSA +++NV  AF T+  EI   +  +V+
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVL 179

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 117/164 (71%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGK+ +L RF+ D F     STIG++F+ + ++++GK +K QIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +T+AYYRGA+G +LVYDI+  ++FD+I  W+  +  H+  +V  +++GNK D+
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            D R+V+   G+ LA   G+ FMETSA  + NV  AF T+  +I
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 119/164 (72%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 7   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRGA G ++VYD++ ++++ ++ +WL E+  ++  NV  +LVGNKSDL
Sbjct: 67  GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
              + V     K  A++ G+ F+ETSA +++NV  AF T+  EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 119/164 (72%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV  +LVGNK DL
Sbjct: 64  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
              + V     K  A++ G+ F+ETSA +++NV  +F T+  EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 119/164 (72%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 14  DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 73
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV  +LVGNK DL
Sbjct: 74  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
              + V     K  A++ G+ F+ETSA +++NV  +F T+  EI
Sbjct: 134 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  171 bits (432), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 119/164 (72%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 23  DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 82
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV  +LVGNK DL
Sbjct: 83  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 142
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
              + V     K  A++ G+ F+ETSA +++NV  +F T+  EI
Sbjct: 143 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  170 bits (431), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 119/163 (73%), Gaps = 1/163 (0%)
Query: 9   RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
           ++ D + K++LIGDS VGKS LL RF  D+F P+  +TIG++F+ + +DINGK+VK Q+W
Sbjct: 15  KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74
Query: 69  DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
           DTAGQERFR +T+AYYRGA+G +LVYD++  +TF +I +W   ++ H++     +LVGNK
Sbjct: 75  DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 134
Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
           SD+ + R VT  +G+ALA+  G+ F+E+SA +  NV   F T+
Sbjct: 135 SDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  170 bits (430), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 119/164 (72%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGK+ LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 14  DYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 73
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV  +LVGNK DL
Sbjct: 74  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
              + V     K  A++ G+ F+ETSA +++NV  +F T+  EI
Sbjct: 134 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  169 bits (429), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 118/164 (71%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 31  DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 90
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV  +LVGNK DL
Sbjct: 91  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
              + V     K  A++ G+ F+ETSA +++NV  +F T   EI
Sbjct: 151 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 115/160 (71%), Gaps = 1/160 (0%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D + K++LIGDS VGKS LL RF  D+F P+  +TIG++F+ + +DINGK+VK QIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +T+AYYRGA G +LVYDI+  +TF +I +W   ++ H++     +LVGNKSD 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
            + R VT  +G+ALA+  G+ F+E+SA +  NV   F T+
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           + K++LIGDS VGKS LL RF  D+F P+  +TIG++F+ + +DINGK+VK Q+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133
           ERFR +T+AYYRGA+G +LVYD++  +TF +I +W   ++ H++     +LVGNKSD+ +
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
            R VT  +G+ALA+  G+ F+E+SA +  NV   F T+
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 163

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 110/166 (66%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D+LFK ++IG++  GKS LL +F   +F  +S  TIGVEF ++ +++ GK VK QIWDTA
Sbjct: 8   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 67
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR+VT +YYRGA GALLVYDI+ R+T++++  WL +    +  N+V IL GNK DL
Sbjct: 68  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 127
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
              REVT  E    A+   L F+ETSAL   NV  AF     +I N
Sbjct: 128 DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 118/164 (71%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV  +LVG K DL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDL 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
              + V     K  A++ G+ F+ETSA +++NV  +F T+  EI
Sbjct: 126 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 118/164 (71%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D LFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 4   DALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV  +LVGNK DL
Sbjct: 64  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
              + V     K  A++ G+ F+ETSA +++NV  +F T+  EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 115/160 (71%), Gaps = 1/160 (0%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D + K++LIGDS VGKS LL RF  D+F P+  +TIG++F+ + +DINGK+VK Q+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +T+AYYRGA G +LVYD++  +TF +I +W   ++ H++     +LVGNKSD 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
            + R VT  +G+ALA+  G+ F+E+SA +  NV   F T+
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 110/166 (66%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D+LFK ++IG++  GKS LL +F   +F  +S  TIGVEF ++ +++ GK VK QIWDTA
Sbjct: 9   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 68
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR+VT +YYRGA GALLVYDI+ R+T++++  WL +    +  N+V IL GNK DL
Sbjct: 69  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 128
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
              REVT  E    A+   L F+ETSAL   +V  AF     +I N
Sbjct: 129 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 174

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 110/157 (70%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D+LFK+VLIG++ VGK+ L+ RF +  F P   +TIGV+F  + ++ING++VK QIWDTA
Sbjct: 24  DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR++T +YYR A   +L YDI+  ++F  +  WL E+  ++   V+T+LVGNK DL
Sbjct: 84  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
            + REV+    +  +EAQ ++++ETSA +S NV   F
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  163 bits (412), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 109/166 (65%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D+LFK ++IG++  GKS LL +F   +F  +S  TIGVEF ++ +++ GK VK QIWDTA
Sbjct: 6   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 65
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           G ERFR+VT +YYRGA GALLVYDI+ R+T++++  WL +    +  N+V IL GNK DL
Sbjct: 66  GLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
              REVT  E    A+   L F+ETSAL   +V  AF     +I N
Sbjct: 126 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 171

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 115/160 (71%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135
           FR +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV  +LVGNK DL   +
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 136 EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            V     K  A++ G+ F+ETSA +++NV  +F T+  EI
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 115/164 (70%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTA
Sbjct: 3   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   +LVGNK D+
Sbjct: 63  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 122
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           +D R V++  G+ LA+  G  F E SA D+ NV   F+ +V  I
Sbjct: 123 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 115/167 (68%)
Query: 9   RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
           R  DY+FK++LIG+S+VGK++ L R+A D F P   ST+G++F+ + +  + K +K QIW
Sbjct: 17  RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76
Query: 69  DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
           DTAGQER+R +T+AYYRGA+G LL+YDI+ +++F ++  W  ++ T+S  N   ILVGNK
Sbjct: 77  DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK 136
Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            DL+D R V   +G+ LA+  G  F E SA ++ NV   F+ +V  I
Sbjct: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 119/169 (70%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  + K VK QIWDTA
Sbjct: 21  DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTA 80
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   ILVGNK D+
Sbjct: 81  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 140
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           ++ R V T +G+ LAE  G  F E SA ++ +V  AF+ +V  I + +S
Sbjct: 141 EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 107/168 (63%), Gaps = 4/168 (2%)
Query: 11  EDYL--FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
           ED L   K+++IG+S VGKS+LL RF  D F P   +TIGV+F+ + + ++G + K  IW
Sbjct: 10  EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69
Query: 69  DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGN 127
           DTAGQERFR +T +YYRGA G +LVYD++RR TF  +  WLNEL T+   N +V  LVGN
Sbjct: 70  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGN 129
Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           K D K+ REV   EG   A      F+E SA     V  AF+ +V +I
Sbjct: 130 KID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 113/163 (69%), Gaps = 1/163 (0%)
Query: 9   RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
           R  D+LFK+++IGDS VGKS+LL RFA + F  +  +TIGV+F+ + ++ING++VK QIW
Sbjct: 4   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 69  DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
           DTAGQERFR +TS YYRG  G ++VYD++  ++F ++ RWL+E++ + D +V  ILVGNK
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNK 122
Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
           +D  + + V T +    A   G+   ETSA ++ NV   F  +
Sbjct: 123 NDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 109/165 (66%), Gaps = 1/165 (0%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-KSTIGVEFQTQKMDINGKEVKAQIWDT 70
           D  FKV+L+GDS VGK+ LL RF    F   +  ST+G++F+ + +D++G +VK Q+WDT
Sbjct: 8   DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 71  AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
           AGQERFR+VT AYYR A   LL+YD++ + +FD+I  WL E+H ++  +V  +L+GNK D
Sbjct: 68  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
               R V   +G+ LA+  GL FMETSA    NV  AF  +  E+
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 110/164 (67%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DY FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTA
Sbjct: 6   DYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 65
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           G ER+R +T+AYYRGA G +L YDI+  ++F+++  W  ++ T+S  N   +LVGNK D 
Sbjct: 66  GLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDX 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           +D R V++  G+ LA+  G  F E SA D+ NV   F+ +V  I
Sbjct: 126 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Query: 9   RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
           R  D+  +V++IG   VGK++L+ RF  D F    KST+GV+F+ + +++ GK+++ QIW
Sbjct: 21  RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIW 80
Query: 69  DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
           DTAGQERF ++TSAYYR A G +LVYDI++++TFD + +W+  +  ++  +   +LVGNK
Sbjct: 81  DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNK 140
Query: 129 SDLKDAREVTTAEGKALAEA-QGLFFMETSALDSSNVTAAFQTVVTEI 175
            D +  RE+T  +G+  A+   G+ F E SA D+ NV   F  +V +I
Sbjct: 141 LDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 105/163 (64%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+VL+GD   GKS+L+ RF +D+F    +STIG  F +Q + +N   VK +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135
           + ++   YYRGA  A++V+D++ + +F+   +W+ EL    + N+V  L GNKSDL DAR
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 136 EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178
           +VT  + +  A+  GLFFMETSA  ++NV   F  +   +  +
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 100/161 (62%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+   TF     W+ EL   +  N+V  L GNK+DL   
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V   E +A A+   L FMETSA  + NV   F  +  ++
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  144 bits (362), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 99/161 (61%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            KV L+GD+ VGKS+++ RF +D F  N   TIG  F T+ +    +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RF ++   YYRG+  A++VYDI+++ +F ++ +W+ EL  H   N+V  + GNK DL D 
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           REV   + K  AE+ G   +ETSA ++ N+   FQ +  +I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 102/161 (63%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+  ++F     W+ EL   +  N+V  L GNK+DL + 
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V   E ++ A+   L FMETSA  S NV   F  +  ++
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 102/156 (65%), Gaps = 3/156 (1%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+VL+G++AVGKS+++ RF  ++F  N + TIG  F TQ++ IN   VK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD-LKDA 134
           F ++   YYR A  AL+VYD+++ Q+F     W+ ELH  +  +++  LVGNK D L++ 
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 135 --REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
             R+V   EG+ LAE +GL F ETSA    NV   F
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 102/161 (63%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+  ++F     W+ EL   +  N+V  L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V   E ++ A+   L FMETSA  S NV   F  +  ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 95/154 (61%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            KV L+GD+ VGKS+++ RF  D F PN   TIG  F T+ +    +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFRA+   YYRG+  A++VYDI++ +TF ++  W+ EL  H   ++V  + GNK DL D 
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           REV   + K  A++    F+ETSA ++ N+   F
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELF 159

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 103/161 (63%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+ ++TF     W+ EL   +  ++V  L GNK+DL + 
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V   E +A A+   L FMETSA  + NV   F  +  ++
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+  ++F     W+ EL   +  N+V  L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V   E ++ A+   L FMETSA  S NV   F  +  ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+  ++F     W+ EL   +  N+V  L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V   E ++ A+   L FMETSA  S NV   F  +  ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+  ++F     W+ EL   +  N+V  L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V   E ++ A+   L FMETSA  S NV   F  +  ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+  ++F     W+ EL   +  N+V  L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V   E ++ A+   L FMETSA  S NV   F  +  ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+  ++F     W+ EL   +  N+V  L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V   E ++ A+   L FMETSA  S NV   F  +  ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+  ++F     W+ EL   +  N+V  L GNK+DL + 
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V   E ++ A+   L F ETSA  S NV   F  +  ++
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 99/161 (61%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+   TF     W+ EL   +  N+V  L GNK+DL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V   E +A A+   L FMETSA  + NV   F  +  ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 99/161 (61%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F+   +STI   F TQ + ++   VK +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+   TF     W+ EL   +  N+V  L GNK+DL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V   E +A A+   L FMETSA  + NV   F  +  ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 94/154 (61%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            KV L+GD+ VGKS+++ RF  D F PN   TIG  F T+ +    +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFRA+   YYRG+  A++VYDI++ +TF ++  W+ EL  H   ++V  + GNK DL D 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           REV   + K  A++    F+ETSA ++ N+   F
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELF 160

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  140 bits (354), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+  ++F     W+ EL   +  N+V  L GNK+DL + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R V   E ++ A+   L FMETSA  S NV   F  +  ++
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 105/161 (65%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L+ RF  D F    ++TIG++F ++ M +  + V+ Q+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR++  +Y R +  A++VYDI+   +F    +W++++ T    +V+ +LVGNK+DL D 
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R++T  EG+  A+   + F+ETSA    NV   F+ V + +
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 104/157 (66%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L+ RF  D F    ++TIG++F ++ M +  + V+ Q+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR++  +Y R +  A++VYDI+   +F    +W++++ T    +V+ +LVGNK+DL D 
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
           R+V+T EG+  A+   + F+ETSA    NV   F+ V
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 104/161 (64%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V +G+ AVGK++++ RF  D F  N +STIG++F ++ + ++   V+ Q+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR++  +Y R +  A++VYDI+ RQ+F++  +W+ ++      +V+  LVGNK+DL D 
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           R+VT  EG   A+     F ETSA    N+   F+   +++
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 118/187 (63%), Gaps = 11/187 (5%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------- 61
           DYL K++ +GDS VGK+  L R+  ++F P   +T+G++F+ +++  N +          
Sbjct: 23  DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NV 120
           +V  Q+WDTAGQERFR++T+A++R A+G LL++D++ +Q+F ++  W+++L  ++   N 
Sbjct: 83  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
             +L+GNK+DL D REV   + + LA+  G+ + ETSA    NV  A +T++  I   + 
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 202
Query: 181 RKVMISQ 187
           + V  +Q
Sbjct: 203 QCVEKTQ 209

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 89/115 (77%)
Query: 17  VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF 76
           ++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 77  RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           R +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV  +LVGNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 109/167 (65%), Gaps = 6/167 (3%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+L+GD  VGKS+L+ R+  ++F   +  TIGVEF  + ++++G+ V  QIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
           ERF+++ + +YRGA   LL + +  RQ+F+++G W  E   ++D+    +   +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 130 DLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 175
           D K+ R+VTT E +      G + ++ETSA D +NVT AF+  V ++
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  134 bits (336), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 104/167 (62%), Gaps = 6/167 (3%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+VL GD+AVGKS+ L R  ++EF  N  +T+GV+FQ + + ++G+    Q+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR++  +Y+R A G LL+YD++  ++F +I  W++ +   +   V  +LVGNK+D++D 
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 135 ------REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
                 + V    G+ LA   G  F ETSA D SN+  A   +  E+
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 103/157 (65%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L+ RF  D F    ++TIG++F ++ M +  + ++ Q+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR++  +Y R +  A++VYDI+   +F    +W++++ T    +V+ +LVGNK+DL D 
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
           R+V+  EG+  A+   + F+ETSA    NV   F+ V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  133 bits (334), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 103/157 (65%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L+ RF  D F    ++TIG++F ++ M +  + V+ Q+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR++  +Y R +  A++VYDI+   +F    +W++++ T    +V+ +LVGNK+DL D 
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
           R+V+  EG+  A+   + F+ETSA    NV   F+ V
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 108/167 (64%), Gaps = 6/167 (3%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           LFK++L+GD  VGKS+L+ R+  ++F      TIGVEF  + ++++G  V  QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
           ERFR++ + +YRG+   LL + +   Q+F ++  W  E   ++D+    +   +++GNK+
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 130 DLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 175
           D+K+ R+V+T E +A  +  G + + ETSA DS+NV AAF+  V  I
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 117/187 (62%), Gaps = 11/187 (5%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM--DINGKE------- 62
           DYL K++ +GDS VGK+  L R+  ++F P   +T+G++F+ +++  D  G +       
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 63  -VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NV 120
            V  Q+WDTAG ERFR++T+A++R A+G LL++D++ +Q+F ++  W+++L  ++   N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
             +L+GNK+DL D REV   + + LAE  G+ + ETSA    NV  + +T++  I   + 
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 181 RKVMISQ 187
           + V  +Q
Sbjct: 189 KCVEKTQ 195

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 117/187 (62%), Gaps = 11/187 (5%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM--DINGKE------- 62
           DYL K++ +GDS VGK+  L R+  ++F P   +T+G++F+ +++  D  G +       
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 63  -VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NV 120
            V  Q+WDTAG ERFR++T+A++R A+G LL++D++ +Q+F ++  W+++L  ++   N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
             +L+GNK+DL D REV   + + LAE  G+ + ETSA    NV  + +T++  I   + 
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 181 RKVMISQ 187
           + V  +Q
Sbjct: 189 KCVEKTQ 195

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 113/183 (61%), Gaps = 5/183 (2%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L+ RF  D F    ++TIG++F ++ M +  + ++ Q+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR++  +Y R +  A++VYDI+   +F    +W++++ T    +V+ +LVGNK+DL D 
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI-----LSRKVMISQEL 189
           R+V+  EG+  A+   + F+ETSA    NV   F+ V   +  +      SR+ MI  +L
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 193
Query: 190 KQK 192
           ++ 
Sbjct: 194 EKP 196

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 102/157 (64%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L+ RF  D F    ++TIG++F ++ M +  + V+ Q+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR++  +Y R +  A++VYDI+   +F    +W++++ T    +V+ +LVGNK+DL D 
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
           R+V+  EG+  A+   + F+ETSA    NV   F+ V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  130 bits (326), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 113/183 (61%), Gaps = 5/183 (2%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L+ RF  D F    ++TIG++F ++ M +  + V+ Q+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR++  +Y R +  A++VYDI+   +F    +W++++ T    +V+ +LVGNK+DL D 
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI-----LSRKVMISQEL 189
           R+V+  EG+  A+   + F+ETSA    NV   F+ V   +  +      SR+ MI  +L
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 196
Query: 190 KQK 192
           ++ 
Sbjct: 197 EKP 199

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 92/156 (58%)
Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           Y FKVVL+G+  VGK++L+ R+  ++F     +T+G  F T+K++I GK V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
           QERF A+   YYR + GA+LVYDI+   +F  +  W+ EL       +   +VGNK DL+
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
             R V+  E ++ AE+ G     TSA  +  +   F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 113/183 (61%), Gaps = 11/183 (6%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN----------GK 61
           DYL K + +GDS VGK+++L ++   +F     +T+G++F+ +++             G+
Sbjct: 9   DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS-DMNV 120
            +  Q+WDTAG ERFR++T+A++R A+G LL++D++  Q+F ++  W+++L  H+   N 
Sbjct: 69  RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
             +L GNKSDL+D R V   E + LAE  G+ + ETSA + +N++ A + ++  I   + 
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRME 188
Query: 181 RKV 183
           R V
Sbjct: 189 RSV 191

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 111/182 (60%), Gaps = 11/182 (6%)
Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM--DINGKE 62
           S  D   DYL K++ +GDS VGK+  L R+  ++F P   +T+G++F+ +++  D  G +
Sbjct: 2   SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 63  --------VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHT 114
                   V  Q+WDTAG ERFR++T+A++R A G LL +D++ +Q+F ++  W ++L  
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQA 121
Query: 115 HSDM-NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173
           ++   N   +L+GNK+DL D REV   + + LAE  G+ + ETSA    NV  + +T++ 
Sbjct: 122 NAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 174 EI 175
            I
Sbjct: 182 LI 183

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 5/167 (2%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           +FK+++IGDS VGK+ L  RF    F   +++TIGV+F+ + +DI+G+ +K Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 74  ERFR-AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNKSDL 131
           ERFR ++   YYR     + VYD++   +F S+  W+ E   H   N +  ILVGNK DL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSAL---DSSNVTAAFQTVVTEI 175
           + A +V T   +  A+   +   ETSA    D+ +V A F T+  ++
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 111/182 (60%), Gaps = 11/182 (6%)
Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM--DINGKE 62
           S  D   DYL K++ +GDS VGK+  L R+  ++F P   +T+G++F+ +++  D  G +
Sbjct: 2   SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 63  --------VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHT 114
                   V  Q+WDTAG ERFR++T+A++R A G LL +D++ +Q+F ++  W ++L  
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQA 121
Query: 115 HSDM-NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173
           ++   N   +L+GNK+DL D REV   + + LAE  G+ + ETSA    NV  + +T++ 
Sbjct: 122 NAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 174 EI 175
            I
Sbjct: 182 LI 183

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 105/167 (62%), Gaps = 6/167 (3%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           LFKV+L+GD  VGKS+L+ R+  ++F      TIGVEF  + ++++G  V  QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
           ERFR++ + +YRG+   LL + +   Q+F ++  W  E   ++D+    +   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 130 DLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 175
           D+ + R+V+T E +A     G + + ETSA D++NV AAF+  V  +
Sbjct: 127 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 105/167 (62%), Gaps = 6/167 (3%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           LFKV+L+GD  VGKS+L+ R+  ++F      TIGVEF  + ++++G  V  QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
           ERFR++ + +YRG+   LL + +   Q+F ++  W  E   ++D+    +   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 130 DLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 175
           D+ + R+V+T E +A     G + + ETSA D++NV AAF+  V  +
Sbjct: 129 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Query: 10  AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
           A   +FK+++IGDS VGK+ L  RF    F   +++TIGV+F+ + +DI+G+ +K Q+WD
Sbjct: 25  ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 84
Query: 70  TAGQERFR-AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGN 127
           TAGQERFR ++   YYR     + VYD +   +F S+  W+ E   H   N +  ILVGN
Sbjct: 85  TAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGN 144
Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSAL---DSSNVTAAFQTVVTEI 175
           K DL+ A +V T   +  A+       ETSA    D+ +V A F T+  ++
Sbjct: 145 KCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 91/156 (58%)
Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           Y FKVVL+G+  VGK++L+ R+  ++F     +T+   F T+K++I GK V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
           QERF A+   YYR + GA+LVYDI+   +F  +  W+ EL       +   +VGNK DL+
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
             R V+  E ++ AE+ G     TSA  +  +   F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 91/156 (58%)
Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           Y FKVVL+G+  VGK++L+ R+  ++F     +T+   F T+K++I GK V   IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
           QERF A+   YYR + GA+LVYDI+   +F  +  W+ EL       +   +VGNK DL+
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
             R V+  E ++ AE+ G     TSA  +  +   F
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 115/196 (58%), Gaps = 15/196 (7%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++GDS VGK++L+ ++   +F    K+TIG +F T+++ ++ + V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
           ERF+++  A+YRGA   +LV+D++   TF ++  W +E    +      N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQTVV---------TEIYNIL 179
           DL++ R+V T   +A   ++  + + ETSA ++ NV  AFQT+           E+YN  
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEF 186
Query: 180 SRKVMISQELKQKDSS 195
              + + +  + K S+
Sbjct: 187 PEPIKLDKNERAKASA 202

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 114/196 (58%), Gaps = 15/196 (7%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++GDS VGK++L+ ++   +F    K+TIG +F T+++ ++ + V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
           ERF+++  A+YRGA   +LV+D++   TF ++  W +E    +      N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQTVV---------TEIYNIL 179
           D ++ R+V T   +A   ++  + + ETSA ++ NV  AFQT+           E+YN  
Sbjct: 128 DFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEF 186
Query: 180 SRKVMISQELKQKDSS 195
              + + +  + K S+
Sbjct: 187 PEPIKLDKNDRAKASA 202

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 104/163 (63%), Gaps = 6/163 (3%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++GDS VGK++L+ ++   +F    K+TIG +F T+++ ++ + V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
           ERF+++  A+YRGA   +LV+D++   TF ++  W +E    +      N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQTV 171
           DL++ R+V T   +A   ++  + + ETSA ++ NV  AFQT+
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  117 bits (292), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 110/165 (66%), Gaps = 7/165 (4%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKA-QIWDTAG 72
           + KV+++GDS VGK++L+ R+  D++    K+TIG +F T+++ ++G +V   Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVT----ILVGNK 128
           QERF+++  A+YRGA   +LVYD++   +F++I  W +E   H+++N       +++GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 129 SDLKDAREVTTAE-GKALAEAQG-LFFMETSALDSSNVTAAFQTV 171
            D ++++++ + +  + LA++ G +    TSA ++ NV  AF+ +
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 114/196 (58%), Gaps = 15/196 (7%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++GDS VGK++L+ ++   +F    K+TIG +F T+++ ++ + V  QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
           ERF+++  A+YRGA   +LV+D++   TF ++  W +E    +      N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQTVV---------TEIYNIL 179
           DL++ R+V T   +A   ++  + + ETSA ++ NV  AFQT+           E+YN  
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEF 186
Query: 180 SRKVMISQELKQKDSS 195
              + + +  + K S+
Sbjct: 187 PEPIKLDKNDRAKASA 202

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K+V++G+ AVGKS+++ R+ +  F  + K TIGV+F  +++ +N ++V+  +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
            F A+T AYYRGA   +LV+  + R++F++I  W  ++      ++ T LV NK DL D 
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDD 124
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169
             +   E + LA+   L F  TS  +  NV+  F+
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 103/204 (50%), Gaps = 41/204 (20%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI---------------- 58
           +K VL+G+S+VGKS+++ R  +D F+ N+ +TIG  F T  +++                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 59  ---------------------NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS 97
                                N   +K  IWDTAGQER+ ++   YYRGA  A++V+DIS
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 98  RRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETS 157
              T D    W+N+L   S  N + ILV NK D K+  +V   E +  A+   L F++TS
Sbjct: 128 NSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 158 ALDSSNVTAAFQTVVTEIY-NILS 180
           A   +N+   F  +  EIY NI++
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNIIN 208

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++G   VGKS L  +F  DEF  + + T    ++ +K+ ++G+EV+  I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 72
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLK 132
           E + A+   Y+R   G L V+ I+  ++F +   +  + L    D NV  +LVGNKSDL+
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           D R+V+  E K  AE   + ++ETSA   +NV   F  ++ EI
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  103 bits (257), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++G   VGKS L  +F  DEF  + + T    ++ +K+ ++G+EV+  I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 76
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLK 132
           E + A+   Y+R   G L V+ I+  ++F +   +  + L    D NV  +LVGNKSDL+
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           D R+V+  E K  AE   + ++ETSA   +NV   F  ++ EI
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  103 bits (257), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++G   VGKS L  +F  DEF  + + T    ++ +K+ ++G+EV+  I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 64
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLK 132
           E + A+   Y+R   G L V+ I+  ++F +   +  + L    D NV  +LVGNKSDL+
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           D R+V+  E K  AE   + ++ETSA   +NV   F  ++ EI
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++G   VGKS L  +F  DEF  + + T    ++ +K+ ++G+EV+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLK 132
           E + A+   Y+R   G L V+ I+  ++F +   +  + L    D NV  +LVGNKSDL+
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           D R+V+  E K  A+   + ++ETSA   +NV   F  ++ EI
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 2/163 (1%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++G   VGKS L  +F  DEF  + + T    ++ +K+ ++G+EV+  I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 64
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLK 132
           E + A+   Y+R   G L V+ I+  ++F +   +  + L    D NV  +LVGNKSDL+
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           D R+V+  E K  AE   + ++ETSA   +NV   F  ++ EI
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++G   VGKS L  +F  DEF  + + T    ++ +K+ ++G+EV+  I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 65
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILV-GNKSDL 131
           E + A+   Y+R   G LLV+ I+  ++F +   +  + L   ++ + + +LV GNKSDL
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           ++ R+V   E ++ AE  G+ ++ETSA   +NV   F  ++ EI
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++G   VGKS L  +F  DEF  + + T    ++ +K+ ++G+EV+  I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 61
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILV-GNKSDL 131
           E + A+   Y+R   G LLV+ I+  ++F +   +  + L   ++ + + +LV GNKSDL
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           ++ R+V   E ++ AE  G+ ++ETSA   +NV   F  ++ EI
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 84/162 (51%), Gaps = 4/162 (2%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK-EVKAQIWDTAGQE 74
           KVV++G   VGK++L  +F   EF      T  VE    K+   GK E    + DTAGQ+
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPT--VENTYSKIVTLGKDEFHLHLVDTAGQD 83
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHT-HSDMNVVTILVGNKSDLKD 133
            +  +  ++  G  G +LVY ++   +F  I     +LH  H    V  +LVGNK+DL  
Sbjct: 84  EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            REV   EGK LAE+ G  FME+SA ++      F  V+ EI
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 4/168 (2%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK-EVKAQIWDTAGQ 73
            K+V++GD A GK++L   FA++ F    K TIG++F  +++ + G   V  QIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRW---LNELHTHSDMNVVTILVGNKSD 130
                +   Y  GA G LLVYDI+  Q+F+++  W   + ++   S+   +  LVGNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178
           L+  R +   +     +  G      SA    +V   FQ V  EI  I
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
            + A+   Y R   G L V+ I+  ++F+ I  +  ++    D  +V  +LVGNKSDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP- 122
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           +R V T + + LA + G+ F+ETSA     V  AF T+V EI
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
            + A+   Y R   G L V+ I+  ++F+ I  +  ++    D  +V  +LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 122
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           +R V T + + LA + G+ F+ETSA     V  AF T+V EI
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF      T+GVE        N   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           +F  +   YY  A  A++++D++ R T+ ++  W  +L    + N+  +L GNK D+KD 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           +    A+       + L + + SA  + N    F
Sbjct: 130 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY  A  A++++D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 117
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+KD +    A+       + L + + SA  + N    F
Sbjct: 118 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 154

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           +F  +   YY  A  A++++D++ R T+ ++  W  +L    + N+  +L GNK D+KD 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           +    A+       + L + + SA  + N    F
Sbjct: 130 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY  A  A++++D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+KD +    A+       + L + + SA  + N    F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY  A  A++++D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+KD +    A+       + L + + SA  + N    F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           KVVL+GD   GK++LL  FA D  +P S +    E     + + GK V   IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFA-DGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           +  +   +Y  A   LL +D++   +FD+I  RW  E++ H    V  I+VG K+DL+  
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRKD 153
Query: 135 R------------EVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQ 169
           +             VT   G+ +A + G + ++E SA    NV A FQ
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQ 201

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF      T+GVE        N   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY  A  A++++D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+KD +    A+       + L + + SA  + N    F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY  A  A++++D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+KD +    A+       + L + + SA  + N    F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY  A  A++++D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 129
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+KD +    A+       + L + + SA  + N    F
Sbjct: 130 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 166

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY  A  A++ +D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+KD +    A+       + L + + SA  + N    F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
            + A+   Y R   G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           AR V + + + LA + G+ ++ETSA     V  AF T+V EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           ++  +   YY  A  A++++D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+KD +    A+       + L + + SA  + N    F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
            + A+   Y R   G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           AR V + + + LA + G+ ++ETSA     V  AF T+V EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 1/155 (0%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIG-VEFQTQKMDINGKEVKAQIWDTAGQ 73
           +K+ LIGD  VGK+  + R     F  N  +T+G V      +D  G  +K  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133
           E+   +   YY GA GA+L +D++ R T  ++ RW+ E           ++  NK D+K+
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
            ++++      + + +   + E SA  + N    F
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
            + A+   Y R   G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           AR V + + + LA + G+ ++ETSA     V  AF T+V EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +TIGVE        N  E+K  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY  A  A++++D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW------HRDLVRVCENIPIVLCGNKV 118
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+K+ +    A+       + L + + SA  + N    F
Sbjct: 119 DVKERK--VKAKTITFHRKKNLQYYDISAKSNYNFEKPF 155

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           +F  +   YY  A  A++++D++ R T+ ++  W  +L    + N+  +L GNK D+KD 
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 131
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           +    A+       + L + + SA  + N    F
Sbjct: 132 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 163

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           +F  +   YY  A  A++++D++ R T+ ++  W  +L    + N+  +L GNK D+KD 
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 125
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           +    A+       + L + + SA  + N    F
Sbjct: 126 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 157

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
            + A+   Y R   G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V + + + LA + G+ ++ETSA     V  AF T+V EI
Sbjct: 122 GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +TIGVE        N  E+K  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY  A  A++++D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW------HRDLVRVCENIPIVLCGNKV 119
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+K+ +    A+       + L + + SA  + N    F
Sbjct: 120 DVKERK--VKAKTITFHRKKNLQYYDISAKSNYNFEKPF 156

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY  A  A++++D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+KD +    A+       + L + + SA  + N    F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +TIGVE        N  E+K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY  A  A++++D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW------HRDLVRVCENIPIVLCGNKV 126
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+K+ +    A+       + L + + SA  + N    F
Sbjct: 127 DVKERK--VKAKTITFHRKKNLQYYDISAKSNYNFEKPF 163

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+ ++G  +VGKS+L  +F   +F  ++  TI   F T+ + +NG+E   Q+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI----GRWLNELHTHSDMNVVTILVGNKSDL 131
           +      Y     G +LVY ++  ++F+ I    G+ L+ +     + +  +LVGNK DL
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDL 121
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174
              R ++  EGKALAE+    F+E+SA ++      F+ ++ E
Sbjct: 122 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    E      +T+GVE        N   +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
           +F  +   YY  A  A++++D++ R T+ ++  W      H D+     N+  +L GNK 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 129
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
           D+KD +    A+       + L + + SA  + N    F
Sbjct: 130 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 166

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 8/163 (4%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+ ++G  +VGKS+L  +F   +F  +   TI   F T+ + +NG+E   Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI----GRWLNELHTHSDMNVVTILVGNKSDL 131
           +      Y     G +LVY ++  ++F+ I    G+ L+ +     + +  +LVGNK DL
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDL 123
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174
              R ++  EGKALAE+    F+E+SA ++      F+ ++ E
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 8/163 (4%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+ ++G  +VGKS+L  +F   +F  +   TI   F T+ + +NG+E   Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI----GRWLNELHTHSDMNVVTILVGNKSDL 131
           +      Y     G +LVY ++  ++F+ I    G+ L+ +     + +  +LVGNK DL
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDL 123
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174
              R ++  EGKALAE+    F+E+SA ++      F+ ++ E
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 8/163 (4%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+ ++G  +VGKS+L  +F   +F  +   TI   F T+ + +NG+E   Q+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI----GRWLNELHTHSDMNVVTILVGNKSDL 131
           +      Y     G +LVY ++  ++F+ I    G+ L+ +     + +  +LVGNK DL
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDL 118
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174
              R ++  EGKALAE+    F+E+SA ++      F+ ++ E
Sbjct: 119 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL  F++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQF-PAVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +       Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 ---ARE--------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
              ARE        V  AEG+ +A   G F +ME SA     V   F+
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ Q ++++ ++   +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
           +F A+   Y +   G  LVY I+ + TF+ +     ++    D  +V  ILVGNK DL+D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 134 AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V   +G+ LA +     F+E+SA    NV   F  +V +I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ Q ++++ ++   +I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTE 64
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
           +F A+   Y +   G  LVY I+ + TF+ +     ++    D  +V  ILVGNK DL+D
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 134 AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V   +G+ LA +     F+E+SA    NV   F  +V +I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ Q ++++ ++   +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
           +F A+   Y +   G  LVY I+ + TF+ +     ++    D  +V  ILVGNK DL+D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 134 AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V   +G+ LA +     F+E+SA    NV   F  +V +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ Q ++++ ++   +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
           +F A+   Y +   G  LVY I+ + TF+ +     ++    D  +V  ILVGNK DL+D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 134 AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V   +G+ LA +     F+E+SA    NV   F  +V +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
             K V +GD AVGK+ +L  +  + F  +   T+   F    + ++G  V   +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLK 132
           E +  +    YRGA   LL + +  + ++++I  +WL EL  H    +  +LVG K DL+
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLR 123
Query: 133 D----------AREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
           D          A  +TTA+G+ L +  G + ++E S+    NV A F T +
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL  F++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL  F++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL  F++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 69
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 176

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL  F++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL  F++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 68
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL  F++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL  F++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL  F++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +F +  F  +   TI   + T+   ++G   +  I DTAGQE F A+   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G LLV+ I+ RQ+F+ +G+   ++    D  +   +LVGNK+DL+  R+V  +E  A 
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
             +  + + E SA    NV  AF+ +V  +
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+ + G + VGKS L+ RF    F      T+   ++ Q   I+ + V  +I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNEL-HTHSDMNVVTILVGNKSDLKDA 134
                  + R   G +LVYDI+ R +F+ +    N L       NV  ILVGNK+DL  +
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 147
Query: 135 REVTTAEGKALAEAQGLFFMETSAL-DSSNVTAAFQTVVTEI 175
           R+V+T EG+ LA      F E SA     N+T  F  +  E+
Sbjct: 148 RQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL  F++DEF P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + +    + ++I  +W+ E+  H   NV  ILV NK DL+  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 134 -------AR----EVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQT 170
                  AR     V T +G+A+A   Q   ++E SA     V   F+T
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 16/173 (9%)
Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
           S  D  ++   K+V++GDS  GK+ LL  FA+D F  N   T+  E  T   +I+ + ++
Sbjct: 19  SHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIE 77
Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTI 123
             +WDT+G   +  V    Y  +   L+ +DISR +T DS+  +W  E+      N   +
Sbjct: 78  LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKML 136
Query: 124 LVGNKSDLK----------DARE--VTTAEGKALAEAQG-LFFMETSALDSSN 163
           LVG KSDL+          + R+  V+  +G  +A+  G   ++E SAL S N
Sbjct: 137 LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +F +  F  +   TI   + T++  I+ +  +  I DTAGQE F A+   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNKSDLKDAREVTTAEGKAL 145
             G LLV+ ++ R +F+ I ++  ++    D +    IL+GNK+DL   R+VT  EG+ L
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A    + +ME SA    NV  AF  +V  I
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I  +  ++    D  +V  +LVGNKSDL  +R V T + + L
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDL 134
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ F+ETSA     V  AF T+V EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I  +  ++    D  +V  +LVGNKSDL  +R V T + + L
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDL 134
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ F+ETSA     V  AF T+V EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
           D  ++   K+V++GDS  GK+ LL  FA+D F  N   T+  E  T   +I+ + ++  +
Sbjct: 17  DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSL 75
Query: 68  WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVG 126
           WDT+G   +  V    Y  +   L+ +DISR +T DS+  +W  E+      N   +LVG
Sbjct: 76  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG 134
Query: 127 NKSDLK----------DARE--VTTAEGKALAEAQG-LFFMETSALDSSN 163
            KSDL+          + R+  V+  +G  +A+  G   ++E SAL S N
Sbjct: 135 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
             K V +GD AVGK+ +L  +  + F  +   T+   F    + ++G  V   +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLK 132
           E +  +    YRGA   +L + +  + +++++  +W+ EL  H    V  ILVG K DL+
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
Query: 133 D----------AREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
           D          A  +TT +G+ L +  G   ++E S+    NV A F   +
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAI 174

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 16/162 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GDS  GK+ LL  FA+D F  N   T+  E  T   +I+ + ++  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLK-- 132
           +  V    Y  +   L+ +DISR +T DS+  +W  E+      N   +LVG KSDL+  
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 126
Query: 133 --------DARE--VTTAEGKALAEAQG-LFFMETSALDSSN 163
                   + R+  V+  +G  +A+  G   ++E SAL S N
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNKSDL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
             K V +GD AVGK+ LL  +  + F  +   T+   F    + +NG  V   +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLK 132
           E +  +    YRGA   +L + +  + +++++  +W+ EL  H    V  +LVG K DL+
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLR 125
Query: 133 D----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVV 172
           D          A  +TT +G+ L +  G   ++E S+    NV   F   +
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQE 188
           A + G+ ++ETSA     V  AF T+V EI     RK+    E
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDE 176

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
             K V +GD AVGK+ +L  +  ++F  +   T+   F +  + ++G+ V   +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQ 67
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLK 132
           E +  +    YRGA   +L + +  + +++++  +W+ EL   +  NV  +LVG K DL+
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 126
Query: 133 DARE--------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
           D +         +T+ +G+ L +  G   ++E S+    NV A F T +  +     RK
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL   ++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL   ++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL   ++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL   ++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL   ++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
           A + G+ ++ETSA     V  AF T+V EI     RK+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
           A + G+ ++ETSA     V  AF T+V EI     RK+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL  F++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL+  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V + EG+ +A     F ++E SA     V   F+
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAG E + A+   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I  +  ++    D  +V  +LVGNK DL  +R V T + + L
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDL 151
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ F+ETSA     V  AF T+V EI
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           ++V + G   VGKS+L+ RF +  F  +   T+   ++ Q +  +      QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNEL-HTHSDMNVVTI-LVGNKSDLK 132
           +F A+           +LVY I+ RQ+ + +     ++     D+  + I LVGNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVM 184
            +REV ++E +ALA      FMETSA  + NV   FQ    E+ N+  R+ +
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ----ELLNLEKRRTV 170

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL  F++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL+  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V + EG+ +A     F ++E SA     V   F+
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 140
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F  I  +  ++    D  +V  +LVGNK DL   R V T +   L
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHEL 151
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
           A++ G+ F+ETSA     V  AF T+V EI     +K+
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 24/192 (12%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y     +L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
            ++            +T  +G A+A+  G + ++E SAL    +   F   +        
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQK 192
           R V+    +K++
Sbjct: 174 RAVLCPPPVKKR 185

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGN+ DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 4/159 (2%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L++VVL+GD  VGK++L + FA  +   +    +G +   + + ++G++    + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 74  ERFRAVTS--AYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTILVGNKSD 130
           E+     S  +  +G    ++VY I+ R +F+S      +L  TH   +V  ILVGNK+D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169
           L   REV+  EG+A A      F+ETSA    NV   F+
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      +I   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 139
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      +I   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y     +L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
            ++            +T  +G A+A+  G + ++E SAL    +   F   +        
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQ 191
           R V+    +K+
Sbjct: 174 RAVLCPPPVKK 184

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           K+ L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y     +L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 125
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
            ++            +T  +G A+A+  G + ++E SAL    +   F   +        
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 177
Query: 181 RKVMISQELKQ 191
           R V+    +K+
Sbjct: 178 RAVLCPPPVKK 188

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y     +L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 123
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
            ++            +T  +G A+A+  G + ++E SAL    +   F   +        
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 175
Query: 181 RKVMISQELKQ 191
           R V+    +K+
Sbjct: 176 RAVLCPPPVKK 186

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K+V++GD AVGK+ LL  F++ E  P +      E  +  M    +E    +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y  +   LL + ++ R +FD+I  +W  E+  + D    T+LVG K DL+ 
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRK 141
Query: 134 --AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEIYN 177
             + +VT  EG  L +  G   ++E S++    +   F+  V  I++
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K+V++GD AVGK+ LL  F++ E  P +      E  +  M    +E    +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 81
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y  +   LL + ++ R +FD+I  +W  E+  + D    T+LVG K DL+ 
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRK 140
Query: 134 --AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEIYN 177
             + +VT  EG  L +  G   ++E S++    +   F+  V  I++
Sbjct: 141 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 187

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DT GQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAG+E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DT GQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAG E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTE 174
           A + G+ ++ETSA     V  AF T+V E
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 24/192 (12%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
            ++            +T  +G A+A+  G + ++E SAL    +   F   +        
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQK 192
           R V+    +K++
Sbjct: 174 RAVLCPPPVKKR 185

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL   ++D+F P        E     ++++GK+V+  +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 68
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL++ 
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V   EG+ +A   G F +ME SA     V   F+
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE   A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 24/191 (12%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
            ++            +T  +G A+A+  G + ++E SAL    +   F   +        
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQ 191
           R V+    +K+
Sbjct: 174 RAVLCPPPVKK 184

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTA QE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTA QE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAG E + A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAG E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAG E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
            ++            +T  +G A+A+  G + ++E SAL    +   F   +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
            ++            +T  +G A+A+  G + ++E SAL    +   F   +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAG E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
            ++            +T  +G A+A+  G + ++E SAL    +   F   +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
            ++            +T  +G A+A+  G + ++E SAL    +   F   +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAG E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 81
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 140
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
            ++            +T  +G A+A+  G + ++E SAL    +   F   +
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 192

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
            ++            +T  +G A+A+  G + ++E SAL    +   F   +  +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 72
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 131
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
            ++            +T  +G A+A+  G + ++E SAL    +   F   +
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 183

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 128
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
            ++            +T  +G A+A+  G + ++E SAL    +   F   +  +
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +  ++ F      TI   ++ Q + I+G+     I DTAG E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK DL  AR V + + + L
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A + G+ ++ETSA     V  AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL   ++D+F P        E     ++++GK+V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 65
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y      L+ + I    + ++I  +W  E+  H   NV  ILVGNK DL+  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                         V + EG+ +A     F ++E SA     V   F+
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +F +  F P+   TI   +  +  +I+ +     + DTAGQE F A+   Y R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L+VY ++ + +F+ + R+   +    D  +   ILV NK DL   R+VT  +GK +
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 146 AEAQGLFFMETSALDSS-NVTAAFQTVV 172
           A    + ++ETSA D   NV   F  +V
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLV 172

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 24/192 (12%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++ K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +++++  +W  E+  H     + ILVG K DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
            ++            +T  +G ALA E   + ++E SAL    +   F   +        
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQK 192
           R V+  Q  +Q+
Sbjct: 174 RAVLCPQPTRQQ 185

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
            ++            +T  +G A+A+  G + ++E SAL    +   F   +        
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQK 192
           R V+    +K++
Sbjct: 174 RAVLCPPPVKKR 185

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
           D A   L K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGL 207
Query: 68  WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVG 126
           WDTAG E +  +    Y      L+ + +    +F  +  +W  E+  H   N   ILVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVG 266
Query: 127 NKSDLKDARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
            K DL+D ++            +T  +G A+A+  G + ++E SAL    +   F   +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
            ++            +T  +G A+A+  G + ++E SAL    +   F   +        
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQK 192
           R V+    +K++
Sbjct: 174 RAVLCPPPVKKR 185

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K VL+GD AVGK++L+  +  +  YP        +  +  + ++G+ V+ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           F  +    Y      LL + +    +F ++  +W+ E+  H     + ILVG +SDL++ 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPI-ILVGTQSDLRED 139
Query: 134 -----------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVV 172
                       + V     K LA E +   ++E SAL   N+   F   +
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
           D A   L K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGL 207
Query: 68  WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVG 126
           WDTAG E +  +    Y      L+ + +    +F  +  +W  E+  H   N   ILVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVG 266
Query: 127 NKSDLKDARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
            K DL+D ++            +T  +G A+A+  G + ++E SAL    +   F   +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
           D A   L K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGL 207
Query: 68  WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVG 126
           WDTAG E +  +    Y      L+ + +    +F  +  +W  E+  H   N   ILVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVG 266
Query: 127 NKSDLKDARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
            K DL+D ++            +T  +G A+A+  G + ++E SAL    +   F   +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 2/150 (1%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +F    F      TI  +F  ++++++      +I DTAG E+F ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 87  AVGALLVYDISRRQTFDSIGRWLNEL-HTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL 145
             G +LVY +  +Q+F  I    +++        V  ILVGNK DL+  REV+++EG+AL
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           AE  G  FMETSA   + V   F  +V ++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +F +  F P    TI   +  +  +I+ +     + DTAGQE F A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L+VY ++ + +F+ + R+   +    D  +   ILV NK DL   R+VT  +GK +
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 146 AEAQGLFFMETSALDSS-NVTAAFQTVVTEI 175
           A    + ++ETSA D   NV   F  +V  I
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  +        T+   +    M ++GK V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
            ++            +T  +G A+A+  G + ++E SAL    +   F   +  +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H     + +LVG K DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
            ++            +T  +G A+A   G + ++E SAL    +   F   +  +
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H     + +LVG K DL+D
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLVGTKLDLRD 122
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
            ++            +T  +G A+A   G + ++E SAL    +   F   +  +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H     + +LVG K DL+D
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLVGTKLDLRD 122
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
            ++            +T  +G A+A   G + ++E SAL    +   F   +  +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 65
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 124
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
            ++            +T  +G A+A+  G + ++E SAL    +   F   +
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 176

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 89
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
            ++            +T  +G A+A+  G + ++E SAL    +   F   +  +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 35/191 (18%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++GK V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 75  RFRAVTSAYYRGAVGALLVYDISRR-------------------QTFDSI-GRWLNELHT 114
            +  +    Y   VG     DI+ R                    +F+++  +W  E+  
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 115 HSDMNVVTILVGNKSDLKDARE------------VTTAEGKALAEAQG-LFFMETSALDS 161
           H   N   ILVG K DL+D ++            +T  +G A+A+  G + ++E SAL  
Sbjct: 125 HCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 162 SNVTAAFQTVV 172
             +   F   +
Sbjct: 184 RGLKTVFDEAI 194

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+VL+GD   GK+ +L   A+D  YP +      E  T  ++   + V+  +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKD-CYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDS-IGRWLNELHTHSDMNVVTILVGNKSDLK-- 132
           +  V    Y  +   LL +DISR +T DS + +W  E+  +     V +L+G K+DL+  
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 130
Query: 133 ----------DAREVTTAEGKALAEAQGL-FFMETSALDS-SNVTAAFQT 170
                         ++  +G A+A+  G   ++E SA  S  ++ + F+T
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 180

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+VL+GD   GK+ +L   A+D  YP +      E  T  ++   + V+  +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKD-CYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDS-IGRWLNELHTHSDMNVVTILVGNKSDLK-- 132
           +  V    Y  +   LL +DISR +T DS + +W  E+  +     V +L+G K+DL+  
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 129
Query: 133 ----------DAREVTTAEGKALAEAQGL-FFMETSALDS-SNVTAAFQT 170
                         ++  +G A+A+  G   ++E SA  S  ++ + F+T
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 179

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 9/182 (4%)
Query: 16  KVVLIGDSAVGKSNLLARFAR--DEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW--DTA 71
           KV ++G++ VGKS L++ F     +F  +   T GVE     + I    V  +++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRW---LNELHTHSDMNVVTILVGNK 128
           G + ++   S Y+ G   A+LV+D+S  ++F+S   W   L       +  +  +LV NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 129 SDLKDAR-EVTTAEGKALAEAQGLFFMETSA-LDSSNVTAAFQTVVTEIYNILSRKVMIS 186
           +DL   R +V     +  A    L F + SA     +  A F ++ T  Y     KV   
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVAAF 201
Query: 187 QE 188
           Q+
Sbjct: 202 QD 203

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+VL+GD   GK+ +L   A+D  YP +      E  T  ++   + V+  +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKD-CYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDS-IGRWLNELHTHSDMNVVTILVGNKSDLK-- 132
           +  V    Y  +   LL +DISR +T DS + +W  E+  +     V +L+G K+DL+  
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 146
Query: 133 ----------DAREVTTAEGKALAEAQGL-FFMETSALDS-SNVTAAFQT 170
                         ++  +G A+A+  G   ++E SA  S  ++ + F+T
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++ K V   +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +++++  +W  E+  H     + ILVG K DL+D
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVGTKLDLRD 127
Query: 134 ARE------------VTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            ++            +T  +G ALA E   + ++E SAL    +   F   +  +
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 3/167 (1%)
Query: 10  AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
           +++ ++KV+L+G   VGKS L   F   E  P +++  G  +  + + ++G+E    ++D
Sbjct: 3   SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYD 60
Query: 70  TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNK 128
              Q+  R +           ++VY ++ + +F+       +L      + V  ILVGNK
Sbjct: 61  IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 120
Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           SDL  +REV+  EG+A A      F+ETSA    NV A F+ VV +I
Sbjct: 121 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+   +    M ++ K V   +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +++++  +W  E+  H     + ILVG K DL+D
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVGTKLDLRD 128
Query: 134 ARE------------VTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            ++            +T  +G ALA E   + ++E SAL    +   F   +  +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 3/167 (1%)
Query: 10  AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
           +++ ++KV+L+G   VGKS L   F   E  P +++  G  +  + + ++G+E    ++D
Sbjct: 3   SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYD 60
Query: 70  TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNK 128
              Q+  R +           ++VY ++ + +F+       +L      + V  ILVGNK
Sbjct: 61  IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 120
Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           SDL  +REV+  EG+A A      F+ETSA    NV A F+ VV +I
Sbjct: 121 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           ++KV+L+G   VGKS L   F   E  P +++  G  +  + + ++G+E    ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNKSDLK 132
           +  R +           ++VY ++ + +F+       +L      + V  ILVGNKSDL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            +REV+  EG+A A      F+ETSA    NV A F+ VV +I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +F +  F  +   TI   +  +  +I+ +     + DTAGQE F A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L+VY ++ + +F+ + R+   +    D  +   ILV NK DL   R+VT  +GK +
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 146 AEAQGLFFMETSALDSS-NVTAAFQTVVTEI 175
           A    + ++ETSA D   NV   F  +V  I
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS L  +F +  F      TI   ++ +  +I+ +     + DTAGQE F A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYR-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 87  AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
             G L+VY ++ + +F+ + R+   +    D  +   ILV NK DL   R+VT  +GK +
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 146 AEAQGLFFMETSALDSS-NVTAAFQTVVTEI 175
           A    + ++ETSA D   NV   F  +V  I
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 16/176 (9%)
Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           + K V++GD AVGK+ LL  +A D F P        +     + + GK+    ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLK 132
           E +  +    Y      L+ + +    +F ++   W+ EL  ++  NV  +L+G + DL+
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLR 135
Query: 133 D------------AREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
           D             + +   +G+ LA+  G   ++E SAL    +   F   +  I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 19/172 (11%)
Query: 15  FKVVLIGDSAVGKSNLLARFA--RDEFYPNSKSTIGVEFQTQKMDINGKE---VKAQIWD 69
           ++VVLIG+  VGKS L   FA   D    + +  +G +   + + ++G+    +   +W+
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWE 65
Query: 70  TAGQERF-----RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTI 123
             G+  +       V  AY       L+VY I+ R +F+       +L       ++  I
Sbjct: 66  NKGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 124 LVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           LVGNKSDL   REV+ +EG+A A      F+ETSA    NV   F+ +V ++
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 27/190 (14%)
Query: 15  FKVVLIGDSAVGKSNLLARFA--RDEFYPNSKSTIGVEFQTQKMDINGKE---VKAQIWD 69
           ++VVLIG+  VGKS L   FA   D    + +  +G +   + + ++G+    +   +W+
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWE 96
Query: 70  TAGQERF-----RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTI 123
             G+  +       V  AY       L+VY I+ R +F+       +L       ++  I
Sbjct: 97  NKGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 124 LVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
           LVGNKSDL   REV+ +EG+A A      F+ETSA    NV   F+ +V        R+V
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV--------RQV 201
Query: 184 MISQELKQKD 193
            + ++ K+K+
Sbjct: 202 RLRRDSKEKN 211

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 17/171 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFAR-DEFYPNSKSTIGVEFQTQKMDINGKE---VKAQIWDT 70
           ++VVLIG+  VGKS L   FA   +   +    +G +   + + ++G+    +   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 71  AGQERF-----RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTIL 124
            G+  +       V  AY       L+VY I+ R +F+       +L       ++  IL
Sbjct: 67  KGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 125 VGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           VGNKSDL   REV+ +EG+A A      F+ETSA    NV   F+ +V ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 17/171 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFAR-DEFYPNSKSTIGVEFQTQKMDINGKE---VKAQIWDT 70
           ++VVLIG+  VGKS L   FA   +   +    +G +   + + ++G+    +   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 71  AGQERF-----RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTIL 124
            G+  +       V  AY       L+VY I+ R +F+       +L       ++  IL
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 125 VGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           VGNKSDL   REV+ +EG+A A      F+ETSA    NV   F+ +V ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 11  EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKA---QI 67
           +D +FKV+L+G+S VGKS L   F   +     +     +   +++ ++ +EV      I
Sbjct: 20  KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDI 79
Query: 68  W---DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH---THSDMNVV 121
           W   D  G  R   + +         L+V+ ++ R++F  +   L  L     H D+ V 
Sbjct: 80  WEQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV- 133
Query: 122 TILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            ILVGNKSDL  +REV+  EG+ LA       +ETSA    N    F+  V +I
Sbjct: 134 -ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL   ++ +F P        E     ++++G+ V+  +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQF-PEVYVPTVFENYVADVEVDGRRVELALWDTAGQED 70
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
           +  +    Y  +   L+ + I    + +++  +W+ E+  H    V  ILVG K DL++ 
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLRND 129
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
                       + VT+ EG+++A+  G   + E SA     V   F+
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 24/177 (13%)
Query: 12  DYLFKVVLIGDSAVGKSNLLARFA-----RDEFYPNSKSTIGVEFQTQKMDINGKEVKAQ 66
           D +FKV+L+G+S VGKS L   F            NS+ T        K ++    +   
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVT--LIVYD 67
Query: 67  IW---DTAG--QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH---THSDM 118
           IW   D  G  Q+       A+       L+V+ ++ R++F  +   L  L     H D+
Sbjct: 68  IWEQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDL 120
Query: 119 NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            V  ILVGNKSDL  +REV+  EG+ LA       +ETSA    N    F+  V +I
Sbjct: 121 PV--ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 14  LFKVVLIGDSAVGKSNLLARFA-----RDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
           +FKV+L+G+S VGKS L   F            NS+ T        K ++    +   IW
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVT--LIVYDIW 59
Query: 69  ---DTAG--QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH---THSDMNV 120
              D  G  Q+       A+       L+V+ ++ R++F  +   L  L     H D+ V
Sbjct: 60  EQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV 112
Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
             ILVGNKSDL  +REV+  EG+ LA       +ETSA    N    F+  V +I
Sbjct: 113 --ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 7/182 (3%)
Query: 27  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
           KS+L+ RF +  F      TI   ++ Q +  +      QI DT G  +F A+       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 87  AVGALLVYDISRRQTFDSIG---RWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK 143
               +LV+ ++ +Q+ + +G   + + ++    + ++  +LVGNK D +  REV T E +
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNKCD-ETQREVDTREAQ 137
Query: 144 ALAEAQGLFFMETSALDSSNVTAAFQTVVT-EIYNILSRKVMISQELKQKDSSSFNGKTV 202
           A+A+     FMETSA  + NV   FQ ++T E    +S  +   +  KQK +    GK  
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKCT 197
Query: 203 VL 204
           ++
Sbjct: 198 LM 199

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQD 377
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   YY G  G + V D + R   D   + L+ +    +M    IL+  NK DL D
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 134 A 134
           A
Sbjct: 438 A 438

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 17  VVLIGDSAVGKSNLLARFARDEFY----PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           + ++G    GKS L  +F    F     PN + T   E       ++ + V  ++ DTA 
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSE-----ETVDHQPVHLRVMDTAD 78
Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTH---SDMNVVTILVGNKS 129
            +  R     Y   A   L+VY +  RQ+FDS   +L  L  H   +  ++  +L+GNK 
Sbjct: 79  LDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKL 137
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSA-LDSSNVTAAFQTVVTE 174
           D+   R+VT AEG ALA   G  F E SA LD  +V   F   V E
Sbjct: 138 DMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   YY G  G + V D + R   D   + L+ +    +M    IL+  NK DL D
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 134 A 134
           A
Sbjct: 116 A 116

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  GQ+
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQD 68
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   YY G  G + V D + R   D   + L+ +    +M    IL+  NK DL D
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 134 A 134
           A
Sbjct: 129 A 129

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 63
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 122
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   YY G  G + V D + R   D   + L+ +    +M    IL+  NK DL D
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 134 A 134
           A
Sbjct: 116 A 116

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 64
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 123
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQD 67
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   YY G  G + V D + R   D   + L+ +    +M    IL+  NK DL D
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
Query: 134 A 134
           A
Sbjct: 128 A 128

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 72
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 131
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 64
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 123
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 65
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 124
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 65
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 124
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 66
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 125
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 69
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 128
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 69
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 128
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVV 172
                        + +T    + LA + + + ++E SAL    +   F   +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    + I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F       +   +    M I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++       T+   +    M I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  G +
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGLD 57
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   YY G  G + V D + R   D   + L+ +    +M    IL+  NK DL D
Sbjct: 58  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117
Query: 134 A 134
           A
Sbjct: 118 A 118

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  G +
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGLD 58
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   YY G  G + V D + R   D   + L+ +    +M    IL+  NK DL D
Sbjct: 59  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 118
Query: 134 A 134
           A
Sbjct: 119 A 119

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  G +
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGLD 68
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   YY G  G + V D + R   D   + L+ +    +M    IL+  NK DL D
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 134 A 134
           A
Sbjct: 129 A 129

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLE 62
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+   +    M I G+     ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLE 66
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W+ E+ TH       +LVG + DL+D
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 125
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
                        + +T    + LA + + + ++E SAL    +   F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            ++ L+G    GK+  +   A  +F  +   T+G  F  +K  +    V  +IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRK--VTKGNVTIKIWDIGGQP 78
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVGNKSD 130
           RFR++   Y RG    + + D + R+  ++     NELH   D      +  +++GNK D
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEAS---RNELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 131 LKDA 134
           L +A
Sbjct: 136 LPNA 139

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           +++ +G  A GK+ +L +    +    +  T+G   +T    +  K VK  +WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
            R +   YY G  G + V D + R   D   + L+ +    +     IL+  NK DL DA
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDA 116

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    E    +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
           R R +   Y++   G + V D + R+    +   L ++    ++ + V +L  NK DL +
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPN 132
Query: 134 AREVT 138
           A  ++
Sbjct: 133 AMAIS 137

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 9/166 (5%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           +++++G  A GK+ +L +    E    +  TIG   +T    +  + +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEVV-TTIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
            R +   YY    G + V D + R+  D     L+ +    ++    ILV  NK DL +A
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNA 133
Query: 135 R---EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
               EVT          +  F   T A     +   F  + T + N
Sbjct: 134 MSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 15/170 (8%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +    E    +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 75  RFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
           R R++   YYR   G + V D + R    +  + + R LNE       N V ++  NK D
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELR---NAVWLVFANKQD 129
Query: 131 LKDAR---EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           L +A    E+T   G      +  F   T A     +    + +   + N
Sbjct: 130 LPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKN 179

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 18/136 (13%)
Query: 3   FYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKE 62
           F+ EE        ++ L+G    GK+  +   A  +F  +   T+G  F  +K  I    
Sbjct: 27  FWKEE-------MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGN 75
Query: 63  VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD----M 118
           V  ++WD  GQ RFR++   Y RG    + + D + ++  ++     NELH   D     
Sbjct: 76  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK---NELHNLLDKPQLQ 132
Query: 119 NVVTILVGNKSDLKDA 134
            +  +++GNK DL  A
Sbjct: 133 GIPVLVLGNKRDLPGA 148

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            ++ L+G    GK+  +   A  +F  +   T+G  F  +K  I    V  ++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQP 78
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           RFR++   Y RG    + + D + ++  ++    L+ L     +  + +LV GNK DL  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138
Query: 134 A 134
           A
Sbjct: 139 A 139

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 15/151 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +    E    +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 75  RFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
           R R++   YYR   G + V D + R    +  + + R LNE       N   ++  NK D
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELR---NAAWLVFANKQD 112
Query: 131 LKDAR---EVTTAEGKALAEAQGLFFMETSA 158
           L +A    E+T   G      +  F   T A
Sbjct: 113 LPEAMSAAEITEKLGLHSIRNRPWFIQATCA 143

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +    E    +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 75  RFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
           R R++   YYR   G + V D + R    +  + + R LNE       N   ++  NK D
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELR---NAAWLVFANKQD 129
Query: 131 LKDA 134
           L +A
Sbjct: 130 LPEA 133

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           KV+++G    GK+ +L +F+ +E    S  TIG     +++ IN    +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGS--NVEEIVINN--TRFLMWDIGGQES 72
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
            R+  + YY      ++V D + R+        L ++  H D+    +L+  NK D+K+ 
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 135 REVTTAE 141
             +T AE
Sbjct: 133 --MTVAE 137

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           KV+++G    GK+ +L +F+ +E    S  TIG     +++ IN    +  +WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGS--NVEEIVINN--TRFLMWDIGGQES 77
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
            R+  + YY      ++V D + R+        L ++  H D+    +L+  NK D+K+ 
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 135 REVTTAE 141
             +T AE
Sbjct: 138 --MTVAE 142

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           KV+++G    GK+ +L +F+ +E    S  TIG     +++ IN    +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGS--NVEEIVINN--TRFLMWDIGGQES 72
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
            R+  + YY      ++V D + R+        L ++  H D+    +L+  NK D+K+ 
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 135 REVTTAE 141
             +T AE
Sbjct: 133 --MTVAE 137

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           KV+++G    GK+ +L +F+ +E    S  TIG     +++ IN    +  +WD  GQE 
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGS--NVEEIVINN--TRFLMWDIGGQES 78
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
            R+  + YY      ++V D + R+        L ++  H D+    +L+  NK D+K+ 
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 135 REVTTAE 141
             +T AE
Sbjct: 139 --MTVAE 143

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    E    +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 75  RFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
           + R +   Y++   G + V D + R    +  D + R LNE       + V ++  NK D
Sbjct: 76  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR---DAVLLVFANKQD 132
Query: 131 LKDA 134
           L +A
Sbjct: 133 LPNA 136

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           KV+++G    GK+ +L +F  +E    S  TIG   +    +I  K     +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVE----EIVVKNTHFLMWDIGGQES 72
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
            R+  + YY      +LV D   R+        L  +  H D+    +L+  NK D+K  
Sbjct: 73  LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGC 132
Query: 135 REVTTAE 141
             +T AE
Sbjct: 133 --MTAAE 137

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+++L +    E    +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
           + R +   YY+     + V D + R         L ++    +M N + ++  NK DL  
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 134 AREVT 138
           A  ++
Sbjct: 133 AMSIS 137

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    E    +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   Y++   G + V D + R+        L ++    ++    +LV  NK D+ +
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 134 AREVT 138
           A  V+
Sbjct: 145 AMPVS 149

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    E    +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   Y++   G + V D + R+  +     L  +    ++    +LV  NK DL +
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280
Query: 134 A 134
           A
Sbjct: 281 A 281

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    E    +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   Y++   G + V D + R+  +     L  +    ++    +LV  NK DL +
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 134 A 134
           A
Sbjct: 116 A 116

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    E    +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   Y++   G + V D + R+  +     L  +    ++    +LV  NK DL +
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132
Query: 134 A 134
           A
Sbjct: 133 A 133

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    E    +  TIG   +T    +  K +   +WD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   Y++   G + V D + R+  +     L  +    ++    +LV  NK DL +
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131
Query: 134 A 134
           A
Sbjct: 132 A 132

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +F  ++    S  T+G   +T    +  +  K  IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
             R+    Y+    G + V D + RQ      R L  L     +   T+L+  NK DL  
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 131
Query: 134 A 134
           A
Sbjct: 132 A 132

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +F  ++    S  T+G   +T    +  +  K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
             R+    Y+    G + V D + RQ      R L  L     +   T+L+  NK DL  
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133
Query: 134 A 134
           A
Sbjct: 134 A 134

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEF--YPNSKSTIGVEFQTQKMDINGK---EVKAQIWDT 70
           K+ ++G++  GK+ LL +  + +        +T+G++ +   + I  K   ++   +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 71  AGQERFRAVTSAYYRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKS 129
           AG+E F +    +       L VYD+S+ Q   D+   WL  +   +  + V ILVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVGTHL 120
Query: 130 DLKDAREVTTAEGKALAE 147
           D+ D ++      K   E
Sbjct: 121 DVSDEKQRKACXSKITKE 138

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +F  ++    S  T+G   +T    +  +  K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
             R+    Y+    G + V D + RQ      R L  L     +   T+L+  NK DL  
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133
Query: 134 A 134
           A
Sbjct: 134 A 134

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEF--YPNSKSTIGVEFQTQKMDINGKEVK---AQIWDT 70
           K+ ++G++  GK+ LL +  + +        +T+G++ +   + I  K  +     +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 71  AGQERFRAVTSAYYRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKS 129
           AG+E F +    +       L VYD+S+ Q   D+   WL  +   +  + V ILVG   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVGTHL 122
Query: 130 DLKDAREVTTAEGKALAE 147
           D+ D ++      K   E
Sbjct: 123 DVSDEKQRKACXSKITKE 140

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 10  AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
           A D   +++L+G    GK+ LL + A ++    S  T    F  + +   G   K  +WD
Sbjct: 13  APDQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWD 67
Query: 70  TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNK 128
             GQ + R    +Y+      + V D + R+ F+  G+ L EL     ++ V +L+  NK
Sbjct: 68  IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 127
Query: 129 SDLKDAREVTTAEGKALAEAQGL 151
            DL     +T A    +AE   L
Sbjct: 128 QDL-----LTAAPASEIAEGLNL 145

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 10  AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
           A D   +++L+G    GK+ LL + A ++    S  T    F  + +   G   K  +WD
Sbjct: 12  APDQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWD 66
Query: 70  TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNK 128
             GQ + R    +Y+      + V D + R+ F+  G+ L EL     ++ V +L+  NK
Sbjct: 67  IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126
Query: 129 SDLKDAREVTTAEGKALAEAQGL 151
            DL     +T A    +AE   L
Sbjct: 127 QDL-----LTAAPASEIAEGLNL 144

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    E    +  TIG   +T    +  K +   +WD  G +
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   Y++   G + V D + R+  +     L  +    ++    +LV  NK DL +
Sbjct: 58  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 117
Query: 134 A 134
           A
Sbjct: 118 A 118

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L R    E    +K TIG   +T    ++ K +K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET----LSYKNLKLNVWDLGGQT 73
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSD 130
             R     YY      + V D + +    +  + L+ +    ++    +LV  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 15/165 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L R    E    +  TIG   +T    +  K +K Q+WD  GQ 
Sbjct: 3   MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVET----VTYKNLKFQVWDLGGQT 57
Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE----LHTHSDMNVVTILVGNKSD 130
             R     YY      + V D   R   D IG   +E    L        + ++  NK D
Sbjct: 58  SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 114
Query: 131 LKDA---REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172
           ++ A    E+  A G    + +     +TSA   + +  A + +V
Sbjct: 115 MEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 159

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           +++L+G    GK+ LL + A ++    S  T    F  + +   G   K  +WD  GQ +
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
            R    +Y+      + V D + R+ F+  G+ L EL     ++ V +L+  NK DL   
Sbjct: 61  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL--- 117
Query: 135 REVTTAEGKALAEAQGL 151
             +T A    +AE   L
Sbjct: 118 --LTAAPASEIAEGLNL 132

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 15/151 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +    E    +  TIG   +     +    +   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVEC----VQYCNISFTVWDVGGQD 72
Query: 75  RFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
           R R++   YY    G + V D + R    +  + + R LNE       N   ++  NK D
Sbjct: 73  RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNE---DELCNAAWLVFANKQD 129
Query: 131 LKDAR---EVTTAEGKALAEAQGLFFMETSA 158
           L +A    E+T   G      +  F   T A
Sbjct: 130 LPEAMSAAEITEKLGLHSIRNRPWFIQATCA 160

>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQT-QKMDING-------KEVKAQ 66
            KV LIGD   GK++LL +   + F P    T G+   T Q  +I G       KE    
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 67  IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVG 126
            WD  GQE   A    +   +   +L+ D    +T  +   WL  +  +   + V I+V 
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKSPV-IVVM 157
Query: 127 NKSD 130
           NK D
Sbjct: 158 NKID 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-111
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-109
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-107
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-107
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-107
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-107
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-107
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-106
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-105
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-105
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-105
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-105
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-105
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-104
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-104
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-104
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-103
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-103
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-103
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-103
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-103
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-103
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-103
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-102
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-102
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-102
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-102
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-101
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-101
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-101
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-101
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-101
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-100
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-100
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-100
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-99
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	3e-96
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	4e-96
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-95
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-94
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-90
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-90
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	9e-86
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-82
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-80
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-80
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-80
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	5e-78
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-76
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-75
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-73
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	9e-73
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	8e-72
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	8e-72
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-70
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-69
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	7e-68
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-67
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-66
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-66
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-66
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	9e-66
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-64
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-64
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-64
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-64
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-64
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-60
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	9e-55
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-54
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	5e-46
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	8e-43
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-40
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-40
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	7e-40
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-39
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-38
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	8e-38
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	8e-37
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	3e-36
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	4e-36
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-35
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	7e-35
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-33
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	6e-22
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-21
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	8e-16
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-14
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-14
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-14
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	3e-14
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	4e-14
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-14
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	7e-14
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-13
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-13
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	2e-13
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	3e-13
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-12
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	8e-12
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	4e-10
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	8e-10
2ged_A	193	SR-beta, signal recognition particle receptor beta	1e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-09
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-08
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	9e-05

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  316 bits (811), Expect = e-111
 Identities = 111/225 (49%), Positives = 146/225 (64%), Gaps = 6/225 (2%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           M+   +     D LFK+VLIGDS VGKSNLL+RF ++EF  +SKSTIGVEF T+ ++I G
Sbjct: 1   MS-SEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEG 59

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           K +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIS+  ++++   WL+EL  ++D NV
Sbjct: 60  KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV 119

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
              L+GNKSDL   R V T E K  A+   L F ETSAL+S NV  AF+ ++  IY  +S
Sbjct: 120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179

Query: 181 RKVM----ISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCC 221
           +  M     S       +S+ NG T+ L     E + +     CC
Sbjct: 180 KHQMDLGDSSANGNANGASAPNGPTISLTPTPNE-NKKANGNNCC 223

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  311 bits (798), Expect = e-109
 Identities = 91/214 (42%), Positives = 135/214 (63%), Gaps = 10/214 (4%)

Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
           +   DYLFK++LIG+S VGKS LL RF+ D +  +  STIGV+F+ + ++++GK VK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61

Query: 68  WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127
           WDTAGQERFR +TS+YYRG+ G ++VYD++ +++F+ +  WL E+  ++   V+ +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121

Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQ 187
           K DLKD R V     K  A+A  + F+ETSALDS+NV  AF T+  +I   +S++     
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ----- 176

Query: 188 ELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCC 221
            L +      +   V L+G+           GCC
Sbjct: 177 NLNETTQKKEDKGNVNLKGQS-----LTNTGGCC 205

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  306 bits (787), Expect = e-107
 Identities = 113/173 (65%), Positives = 137/173 (79%)

Query: 4   YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEV 63
               D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +
Sbjct: 19  MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78

Query: 64  KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI 123
           KAQIWDTAG ER+RA+TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +
Sbjct: 79  KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 138

Query: 124 LVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           LVGNKSDL+  R V T E +A AE  GL F+ETSALDS+NV AAFQT++TEIY
Sbjct: 139 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  306 bits (785), Expect = e-107
 Identities = 83/178 (46%), Positives = 114/178 (64%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D+LFK ++IG++  GKS LL +F   +F  +S  TIGVEF ++ +++ GK VK QIWDTA
Sbjct: 8   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 67

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR+VT +YYRGA GALLVYDI+ R+T++++  WL +    +  N+V IL GNK DL
Sbjct: 68  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 127

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQEL 189
              REVT  E    A+   L F+ETSAL   NV  AF     +I N +    +  + +
Sbjct: 128 DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERM 185

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  306 bits (785), Expect = e-107
 Identities = 85/185 (45%), Positives = 114/185 (61%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
                  D+LFK ++IG +  GKS LL +F  ++F  +S  TIGVEF ++ +++ GK VK
Sbjct: 16  PRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVK 75

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTIL 124
            QIWDTAGQERFR+VT +YYRGA GALLVYDI+ R+T++S+  WL +  T +  N+V IL
Sbjct: 76  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVIL 135

Query: 125 VGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVM 184
            GNK DL   REVT  E    A+   L F+ETSAL   NV  AF      I N +    +
Sbjct: 136 CGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGEL 195

Query: 185 ISQEL 189
             + +
Sbjct: 196 DPERM 200

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  305 bits (784), Expect = e-107
 Identities = 111/177 (62%), Positives = 140/177 (79%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQER+R +TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQE 188
           +  R V T E +A AE   L F+ETSALDS+NV  AF+ ++TEIY I+S+K +  + 
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRA 179

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  305 bits (783), Expect = e-107
 Identities = 100/179 (55%), Positives = 135/179 (75%)

Query: 4   YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEV 63
                   +++FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    V
Sbjct: 15  VPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAV 74

Query: 64  KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI 123
           KAQIWDTAG ER+RA+TSAYYRGAVGALLV+D+++ QT+  + RWL EL+ H++  +V +
Sbjct: 75  KAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM 134

Query: 124 LVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
           LVGNKSDL  AREV T E +  AE  GL F+ETSALDS+NV  AF+TV+ EI+  +S++
Sbjct: 135 LVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  301 bits (774), Expect = e-106
 Identities = 89/172 (51%), Positives = 117/172 (68%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + ++I+GK++K QIWDTA
Sbjct: 19  SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA 78

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQE FR++T +YYRGA GALLVYDI+RR+TF+ +  WL +   HS  N+V +L+GNKSDL
Sbjct: 79  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 138

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
           +  R+V   EG+A A   GL FMETSA  + NV  AF     EIY  + + +
Sbjct: 139 ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 190

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  301 bits (772), Expect = e-105
 Identities = 83/165 (50%), Positives = 112/165 (67%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
            Y+FK ++IGD  VGKS LL +F   +F  +   TIGVEF T+ ++++G+++K QIWDTA
Sbjct: 13  SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFRAVT +YYRGA GAL+VYDI+RR T++ +  WL +    ++ N V IL+GNK+DL
Sbjct: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 132

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           +  R+VT  E K  AE  GL F+E SA    NV  AF     +IY
Sbjct: 133 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  301 bits (773), Expect = e-105
 Identities = 76/201 (37%), Positives = 124/201 (61%), Gaps = 3/201 (1%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTA
Sbjct: 6   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 65

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           G ER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   +LVGNK D+
Sbjct: 66  GLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 125

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQ 191
           +D R V++  G+ LA+  G  F E SA D+ NV   F+ +V  I   +S  +  +     
Sbjct: 126 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD---P 182

Query: 192 KDSSSFNGKTVVLEGEKKEAD 212
             + +  G  +  +      D
Sbjct: 183 AVTGAKQGPQLTDQQAPPHQD 203

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  300 bits (771), Expect = e-105
 Identities = 70/171 (40%), Positives = 106/171 (61%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
               K+VL+GD   GKS+L+ RF +D+F    +STIG  F +Q + +N   VK +IWDTA
Sbjct: 10  SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 69

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQER+ ++   YYRGA  A++V+D++ + +F+   +W+ EL    + N+V  L GNKSDL
Sbjct: 70  GQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL 129

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
            DAR+VT  + +  A+  GLFFMETSA  ++NV   F  +   +  +   +
Sbjct: 130 LDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  300 bits (770), Expect = e-105
 Identities = 74/177 (41%), Positives = 117/177 (66%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D+LFK+VLIG++ VGK+ L+ RF +  F P   +TIGV+F  + ++ING++VK QIWDTA
Sbjct: 24  DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR++T +YYR A   +L YDI+  ++F  +  WL E+  ++   V+T+LVGNK DL
Sbjct: 84  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQE 188
            + REV+    +  +EAQ ++++ETSA +S NV   F  +   + +   +  +++  
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNV 200

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  299 bits (769), Expect = e-105
 Identities = 81/188 (43%), Positives = 123/188 (65%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           +   S  +   DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++G
Sbjct: 3   LGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           K +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 122

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
             +LVGNK DL   + V     K  A++ G+ F+ETSA +++NV  +F T+  EI   + 
Sbjct: 123 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 182

Query: 181 RKVMISQE 188
                   
Sbjct: 183 PGATAGGA 190

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  298 bits (766), Expect = e-104
 Identities = 80/171 (46%), Positives = 119/171 (69%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGK+ +L RF+ D F     STIG++F+ + ++++GK +K QIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +T+AYYRGA+G +LVYDI+  ++FD+I  W+  +  H+  +V  +++GNK D+
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
            D R+V+   G+ LA   G+ FMETSA  + NV  AF T+  +I   + + 
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKN 176

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  298 bits (765), Expect = e-104
 Identities = 77/173 (44%), Positives = 117/173 (67%)

Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
            R  DY+FK++LIG+S+VGK++ L R+A D F P   ST+G++F+ + +  + K +K QI
Sbjct: 16  PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQI 75

Query: 68  WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127
           WDTAGQER+R +T+AYYRGA+G LL+YDI+ +++F ++  W  ++ T+S  N   ILVGN
Sbjct: 76  WDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135

Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           K DL+D R V   +G+ LA+  G  F E SA ++ NV   F+ +V  I   ++
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  297 bits (763), Expect = e-104
 Identities = 69/217 (31%), Positives = 119/217 (54%), Gaps = 14/217 (6%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
             +       FK+V +G+ +VGK++L+ RF  D F    ++TIG++F ++ M +  + V+
Sbjct: 7   GGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 66

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTIL 124
            Q+WDTAG ERFR++  +Y R +  A++VYDI+   +F    +W++++ T    +V+ +L
Sbjct: 67  LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 126

Query: 125 VGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVM 184
           VGNK+DL D R+V+  EG+  A+   + F+ETSA    NV   F+ V   +  + S    
Sbjct: 127 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES---- 182

Query: 185 ISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCC 221
                  +D S  +   + LE  ++    +P   G C
Sbjct: 183 ------TQDRSREDMIDIKLEKPQE----QPVSEGGC 209

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  295 bits (758), Expect = e-103
 Identities = 63/165 (38%), Positives = 94/165 (56%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
            Y FKVVL+G+  VGK++L+ R+  ++F     +T+G  F T+K++I GK V   IWDTA
Sbjct: 4   AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTA 63

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERF A+   YYR + GA+LVYDI+   +F  +  W+ EL       +   +VGNK DL
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           +  R V+  E ++ AE+ G     TSA  +  +   F  +   + 
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  296 bits (759), Expect = e-103
 Identities = 76/176 (43%), Positives = 115/176 (65%), Gaps = 1/176 (0%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D+LFK+++IGDS VGKS+LL RFA + F  +  +TIGV+F+ + ++ING++VK QIWDTA
Sbjct: 7   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS YYRG  G ++VYD++  ++F ++ RWL+E++ + D +V  ILVGNK+D 
Sbjct: 67  GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDD 125

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQ 187
            + + V T +    A   G+   ETSA ++ NV   F  +   +       +   Q
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQ 181

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  296 bits (759), Expect = e-103
 Identities = 81/173 (46%), Positives = 121/173 (69%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
           S  +   DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K
Sbjct: 24  SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 83

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTIL 124
            QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+  ++  NV  +L
Sbjct: 84  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 143

Query: 125 VGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           VGNK DL   + V     K  A++ G+ F+ETSA +++NV  +F T+  EI  
Sbjct: 144 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  296 bits (759), Expect = e-103
 Identities = 85/181 (46%), Positives = 120/181 (66%), Gaps = 1/181 (0%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
            + D   D+LFK+VL+GD++VGK+ ++ RF    F     STIGV+F  + ++I GK VK
Sbjct: 20  GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK 79

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTIL 124
            QIWDTAGQERFR +T +YYR A GA+L YDI++R +F S+  W+ ++  ++  N+V +L
Sbjct: 80  LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139

Query: 125 VGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
           +GNKSDL + REV+ AE ++LAE    L  +ETSA DSSNV  AF  V TE+       +
Sbjct: 140 IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPL 199

Query: 184 M 184
            
Sbjct: 200 F 200

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  295 bits (758), Expect = e-103
 Identities = 71/174 (40%), Positives = 112/174 (64%), Gaps = 1/174 (0%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
               R  D+  +V++IG   VGK++L+ RF  D F    KST+GV+F+ + +++ GK+++
Sbjct: 17  RGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIR 76

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTIL 124
            QIWDTAGQERF ++TSAYYR A G +LVYDI++++TFD + +W+  +  ++  +   +L
Sbjct: 77  LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 136

Query: 125 VGNKSDLKDAREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           VGNK D +  RE+T  +G+  A +  G+ F E SA D+ NV   F  +V +I  
Sbjct: 137 VGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  295 bits (758), Expect = e-103
 Identities = 84/201 (41%), Positives = 132/201 (65%), Gaps = 1/201 (0%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           ++  S   ++ D + K++LIGDS VGKS LL RF  D+F P+  +TIG++F+ + +DING
Sbjct: 7   VSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 66

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           K+VK Q+WDTAGQERFR +T+AYYRGA+G +LVYD++  +TF +I +W   ++ H++   
Sbjct: 67  KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEA 126

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
             +LVGNKSD+ + R VT  +G+ALA+  G+ F+E+SA +  NV   F T+   I   + 
Sbjct: 127 QLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 185

Query: 181 RKVMISQELKQKDSSSFNGKT 201
              ++     ++ + S N  +
Sbjct: 186 SNKLVGVGNGKEGNISINSGS 206

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  294 bits (755), Expect = e-103
 Identities = 77/172 (44%), Positives = 110/172 (63%), Gaps = 1/172 (0%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-KSTIGVEFQTQKMDINGKEVKAQIWDT 70
           D  FKV+L+GDS VGK+ LL RF    F   +  ST+G++F+ + +D++G +VK Q+WDT
Sbjct: 8   DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67

Query: 71  AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
           AGQERFR+VT AYYR A   LL+YD++ + +FD+I  WL E+H ++  +V  +L+GNK D
Sbjct: 68  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127

Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
               R V   +G+ LA+  GL FMETSA    NV  AF  +  E+     + 
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  293 bits (753), Expect = e-102
 Identities = 76/169 (44%), Positives = 119/169 (70%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  + K VK QIWDTA
Sbjct: 21  DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTA 80

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   ILVGNK D+
Sbjct: 81  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 140

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
           ++ R V T +G+ LAE  G  F E SA ++ +V  AF+ +V  I + +S
Sbjct: 141 EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  292 bits (750), Expect = e-102
 Identities = 67/171 (39%), Positives = 101/171 (59%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
               KV L+GD+ VGKS+++ RF +D F  N   TIG  F T+ +    +  K  IWDTA
Sbjct: 21  IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 80

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERF ++   YYRG+  A++VYDI+++ +F ++ +W+ EL  H   N+V  + GNK DL
Sbjct: 81  GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 140

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
            D REV   + K  AE+ G   +ETSA ++ N+   FQ +  +I  +   +
Sbjct: 141 SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  291 bits (748), Expect = e-102
 Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 4/175 (2%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKE-VKAQIWDT 70
               K+V++GD A GK++L   FA++ F    K TIG++F  +++ + G   V  QIWD 
Sbjct: 4   MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63

Query: 71  AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH---THSDMNVVTILVGN 127
            GQ     +   Y  GA G LLVYDI+  Q+F+++  W   +      S+   +  LVGN
Sbjct: 64  GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123

Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
           K DL+  R +   +     +  G      SA    +V   FQ V  EI  I   K
Sbjct: 124 KIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  290 bits (746), Expect = e-102
 Identities = 67/162 (41%), Positives = 96/162 (59%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            KV L+GD+ VGKS+++ RF  D F PN   TIG  F T+ +    +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFRA+   YYRG+  A++VYDI++ +TF ++  W+ EL  H   ++V  + GNK DL D 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           REV   + K  A++    F+ETSA ++ N+   F  +   I 
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  290 bits (745), Expect = e-101
 Identities = 83/169 (49%), Positives = 119/169 (70%), Gaps = 1/169 (0%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D + K++LIGDS VGKS LL RF  D+F P+  +TIG++F+ + +DINGK+VK QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +T+AYYRGA+G +LVYDI+  +TF +I +W   ++ H++     +LVGNKSD+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
            + R VT  +G+ALA+  G+ F+E+SA +  NV   F T+   I   + 
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 168

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  291 bits (746), Expect = e-101
 Identities = 67/179 (37%), Positives = 107/179 (59%), Gaps = 6/179 (3%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
           S +  +    +K+VL GD+AVGKS+ L R  ++EF  N  +T+GV+FQ + + ++G+   
Sbjct: 19  SAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTV 78

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTIL 124
            Q+WDTAGQERFR++  +Y+R A G LL+YD++  ++F +I  W++ +   +   V  +L
Sbjct: 79  LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIML 138

Query: 125 VGNKSDLKDA------REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           VGNK+D++D       + V    G+ LA   G  F ETSA D SN+  A   +  E+  
Sbjct: 139 VGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  289 bits (743), Expect = e-101
 Identities = 58/168 (34%), Positives = 98/168 (58%), Gaps = 1/168 (0%)

Query: 10  AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
             +   K+V++G+ AVGKS+++ R+ +  F  + K TIGV+F  +++ +N ++V+  +WD
Sbjct: 1   GSEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWD 60

Query: 70  TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKS 129
           TAGQE F A+T AYYRGA   +LV+  + R++F++I  W  ++      ++ T LV NK 
Sbjct: 61  TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKI 119

Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           DL D   +   E + LA+   L F  TS  +  NV+  F+ +  +   
Sbjct: 120 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  289 bits (743), Expect = e-101
 Identities = 65/178 (36%), Positives = 110/178 (61%), Gaps = 2/178 (1%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           M+  S +       FK+V +G+ +VGK++L+ RF  D F    ++TIG++F ++ M +  
Sbjct: 3   MS--SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 60

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
           + V+ Q+WDTAGQERFR++  +Y R +  A++VYDI+   +F    +W++++ T    +V
Sbjct: 61  RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 120

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178
           + +LVGNK+DL D R+V+T EG+  A+   + F+ETSA    NV   F+ V   +  +
Sbjct: 121 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 178

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  289 bits (742), Expect = e-101
 Identities = 70/164 (42%), Positives = 102/164 (62%)

Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
             FK+VL+G+SAVGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
           QER+ ++   YYRGA  A++VYDI+  ++F     W+ EL   +  N+V  L GNK+DL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           + R V   E ++ A+   L FMETSA  S NV   F  +  ++ 
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  289 bits (741), Expect = e-100
 Identities = 66/190 (34%), Positives = 115/190 (60%), Gaps = 11/190 (5%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN----- 59
           S  D   DYL K + +GDS VGK+++L ++   +F     +T+G++F+ +++        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61

Query: 60  -----GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHT 114
                G+ +  Q+WDTAG ERFR++T+A++R A+G LL++D++  Q+F ++  W+++L  
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 121

Query: 115 HSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173
           H+   N   +L GNKSDL+D R V   E + LAE  G+ + ETSA + +N++ A + ++ 
Sbjct: 122 HAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181

Query: 174 EIYNILSRKV 183
            I   + R V
Sbjct: 182 LIMKRMERSV 191

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  289 bits (742), Expect = e-100
 Identities = 67/195 (34%), Positives = 117/195 (60%), Gaps = 11/195 (5%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKE-- 62
                  DYL K++ +GDS VGK+  L R+  ++F P   +T+G++F+ +++  N +   
Sbjct: 16  PRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPN 75

Query: 63  --------VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHT 114
                   V  Q+WDTAGQERFR++T+A++R A+G LL++D++ +Q+F ++  W+++L  
Sbjct: 76  GSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 135

Query: 115 HSDM-NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173
           ++   N   +L+GNK+DL D REV   + + LA+  G+ + ETSA    NV  A +T++ 
Sbjct: 136 NAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLD 195

Query: 174 EIYNILSRKVMISQE 188
            I   + + V  +Q 
Sbjct: 196 LIMKRMEQCVEKTQI 210

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  288 bits (739), Expect = e-100
 Identities = 77/172 (44%), Positives = 106/172 (61%), Gaps = 2/172 (1%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
               K+++IG+S VGKS+LL RF  D F P   +TIGV+F+ + + ++G + K  IWDTA
Sbjct: 13  LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNKSD 130
           GQERFR +T +YYRGA G +LVYD++RR TF  +  WLNEL T+   N +V +LVGNK D
Sbjct: 73  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 132

Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
            ++ REV   EG   A    + F+E SA     V  AF+ +V +I       
Sbjct: 133 KEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLW 183

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  286 bits (734), Expect = 1e-99
 Identities = 66/175 (37%), Positives = 103/175 (58%), Gaps = 5/175 (2%)

Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
             +   +FK+++IGDS VGK+ L  RF    F   +++TIGV+F+ + +DI+G+ +K Q+
Sbjct: 14  RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 73

Query: 68  WDTAGQERFR-AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILV 125
           WDTAGQERFR ++   YYR     + VYD++   +F S+  W+ E   H   N +  ILV
Sbjct: 74  WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 133

Query: 126 GNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL---DSSNVTAAFQTVVTEIYN 177
           GNK DL+ A +V T   +  A+   +   ETSA    D+ +V A F T+  ++ +
Sbjct: 134 GNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  278 bits (713), Expect = 3e-96
 Identities = 62/215 (28%), Positives = 111/215 (51%), Gaps = 18/215 (8%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
             L KV+++GDS VGK++L+ ++   +F    K+TIG +F T+++ ++ + V  QIWDTA
Sbjct: 6   KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTA 65

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGN 127
           GQERF+++  A+YRGA   +LV+D++   TF ++  W +E    +      N   +++GN
Sbjct: 66  GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125

Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQ 187
           K DL++ +  T            + + ETSA ++ NV  AFQT+        +       
Sbjct: 126 KIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET------- 178

Query: 188 ELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222
              + +  +   + + L+  ++        A  CS
Sbjct: 179 ---EVELYNEFPEPIKLDKNER----AKASAESCS 206

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  277 bits (710), Expect = 4e-96
 Identities = 65/171 (38%), Positives = 104/171 (60%), Gaps = 6/171 (3%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
             LFKV+L+GD  VGKS+L+ R+  ++F      TIGVEF  + ++++G  V  QIWDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGN 127
           GQERFR++ + +YRG+   LL + +   Q+F ++  W  E   ++D+    +   +++GN
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 124

Query: 128 KSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYN 177
           K D+ + R+V+T E +A     G   + ETSA D++NV AAF+  V  +  
Sbjct: 125 KIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  277 bits (710), Expect = 1e-95
 Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 9/194 (4%)

Query: 4   YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFAR--DEFYPNSKSTIGVEFQTQKMDINGK 61
               D       KV ++G++ VGKS L++ F     +F  +   T GVE     + I   
Sbjct: 10  VKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDT 69

Query: 62  EVKAQIW--DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHT---HS 116
            V  +++  DTAG + ++   S Y+ G   A+LV+D+S  ++F+S   W   L +     
Sbjct: 70  TVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDR 129

Query: 117 DMNVVTILVGNKSDLKDAR-EVTTAEGKALAEAQGLFFMETSA-LDSSNVTAAFQTVVTE 174
           +  +  +LV NK+DL   R +V     +  A    L F + SA     +  A F ++ T 
Sbjct: 130 ERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189

Query: 175 IYNILSRKVMISQE 188
            Y     KV   Q+
Sbjct: 190 FYRNYEDKVAAFQD 203

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  274 bits (702), Expect = 2e-94
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 1/167 (0%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVE-FQTQKMDINGKEVKAQIWDT 70
           +  +K+ LIGD  VGK+  + R     F  N  +T+G        +D  G  +K  +WDT
Sbjct: 9   ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDT 68

Query: 71  AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
           AGQE+   +   YY GA GA+L +D++ R T  ++ RW+ E           ++  NK D
Sbjct: 69  AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKID 128

Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           +K+ ++++      + + +   + E SA  + N    F  +      
Sbjct: 129 IKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  262 bits (673), Expect = 2e-90
 Identities = 58/173 (33%), Positives = 106/173 (61%), Gaps = 7/173 (4%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDT 70
             + KV+++GDS VGK++L+ R+  D++    K+TIG +F T+++ ++G K    Q+WDT
Sbjct: 6   KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDT 65

Query: 71  AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVG 126
           AGQERF+++  A+YRGA   +LVYD++   +F++I  W +E   H+++        +++G
Sbjct: 66  AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILG 125

Query: 127 NKSDLKDA-REVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYN 177
           NK D +++ + V+    + LA++ G +    TSA ++ NV  AF+ +      
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  264 bits (676), Expect = 2e-90
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 5/215 (2%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           MA  ++ +      FK+VL+GD   GK+  + R    EF     +T+GVE        N 
Sbjct: 4   MASAAQGE--PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR 61

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120
             +K  +WDTAGQE+F  +   YY  A  A++++D++ R T+ ++  W  +L    + N+
Sbjct: 62  GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NI 120

Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
             +L GNK D+KD +    A+       + L + + SA  + N    F  +  ++    +
Sbjct: 121 PIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 178

Query: 181 RKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEP 215
            + +    L   +           E + + A    
Sbjct: 179 LEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 213

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  252 bits (644), Expect = 9e-86
 Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 40/206 (19%)

Query: 11  EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKA----- 65
           +   +K VL+G+S+VGKS+++ R  +D F+ N+ +TIG  F T  +++N   +K      
Sbjct: 4   KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNE 63

Query: 66  --------------------------------QIWDTAGQERFRAVTSAYYRGAVGALLV 93
                                            IWDTAGQER+ ++   YYRGA  A++V
Sbjct: 64  KNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVV 123

Query: 94  YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFF 153
           +DIS   T D    W+N+L   S  N + ILV NK D  +  +V   E +  A+   L F
Sbjct: 124 FDISNSNTLDRAKTWVNQLKISS--NYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLF 180

Query: 154 METSALDSSNVTAAFQTVVTEIYNIL 179
           ++TSA   +N+   F  +  EIY  +
Sbjct: 181 IQTSAKTGTNIKNIFYMLAEEIYKNI 206

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  242 bits (619), Expect = 4e-82
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 2/172 (1%)

Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
              +D +FKV+L+G+S VGKS L   F   +     +     +   +++ ++ +EV   +
Sbjct: 17  QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV 76

Query: 68  WDTAGQERFRAV-TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTILV 125
           +D   Q            +     L+V+ ++ R++F  +   L  L       ++  ILV
Sbjct: 77  YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136

Query: 126 GNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           GNKSDL  +REV+  EG+ LA       +ETSA    N    F+  V +I  
Sbjct: 137 GNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  238 bits (609), Expect = 2e-80
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 19/222 (8%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           MA    + +    L KV+++G   VGKS L  +F  DEF  + + T    ++ + + ++G
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDG 59

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMN 119
           +EV+  I DTAGQE + A+   Y+R   G L V+ I+  ++F +   +  + L    D N
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119

Query: 120 VVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNIL 179
           V  +LVGNKSDL+D R+V+  E K  AE   + ++ETSA   +NV   F  ++ EI    
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR- 178

Query: 180 SRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCC 221
                     K +DS   NGK       K+++ A+  +  CC
Sbjct: 179 ----------KMEDSKEKNGKK------KRKSLAKRIRERCC 204

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  236 bits (605), Expect = 3e-80
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 2/164 (1%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           +FKV+L+G+S VGKS L   F   +     +     +   +++ ++ +EV   ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 74  ERFRAV-TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTILVGNKSDL 131
                       +     L+V+ ++ R++F  +   L  L       ++  ILVGNKSDL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
             +REV+  EG+ LA       +ETSA    N    F+  V +I
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  236 bits (604), Expect = 3e-80
 Identities = 72/166 (43%), Positives = 102/166 (61%), Gaps = 3/166 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K+VL+G++AVGKS+++ RF  ++F  N + TIG  F TQ++ IN   VK +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD---L 131
           RF ++   YYR A  AL+VYD+++ Q+F     W+ ELH  +  +++  LVGNK D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
              R+V   EG+ LAE +GL F ETSA    NV   F  +  +I  
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  231 bits (592), Expect = 5e-78
 Identities = 60/178 (33%), Positives = 97/178 (54%), Gaps = 2/178 (1%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           ++      +    L KV+++G   VGKS L  +F  DEF  + + T    ++ + + ++G
Sbjct: 5   ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDG 63

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMN 119
           +EV+  I DTAGQE + A+   Y+R   G L V+ I+  ++F +   +  + L    D N
Sbjct: 64  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 123

Query: 120 VVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           V  +LVGNKSDL+D R+V+  E K  AE   + ++ETSA   +NV   F  ++ EI  
Sbjct: 124 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  227 bits (581), Expect = 1e-76
 Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 2/165 (1%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++G   VGKS L  +F  DEF  + + T    ++ + + ++G+EV+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQ 62

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLK 132
           E + A+   Y+R   G L V+ I+  ++F +   +  + L    D NV  +LVGNKSDL+
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           D R+V+  E K  A+   + ++ETSA   +NV   F  ++ EI  
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  225 bits (575), Expect = 1e-75
 Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 4/167 (2%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L++VVL+GD  VGK++L + FA  +   +    +G +   + + ++G++    + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQE-RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 74  ERFRAVTS--AYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTILVGNKSD 130
           E+     S  +  +G    ++VY I+ R +F+S      +L  TH   +V  ILVGNK+D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           L   REV+  EG+A A      F+ETSA    NV   F+ VV ++  
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRL 169

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  219 bits (561), Expect = 3e-73
 Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 7/181 (3%)

Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
              KVV++G   VGK++L  +F   EF      T+   +    + +   E    + DTAG
Sbjct: 23  RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKI-VTLGKDEFHLHLVDTAG 81

Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTILVGNKSDL 131
           Q+ +  +  ++  G  G +LVY ++   +F  I     +LH  H    V  +LVGNK+DL
Sbjct: 82  QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQ 191
              REV   EGK LAE+ G  FME+SA ++      F  V+ EI      +V  S   ++
Sbjct: 142 SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI-----ARVENSYGQER 196

Query: 192 K 192
           +
Sbjct: 197 R 197

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  219 bits (559), Expect = 9e-73
 Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 7/180 (3%)

Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKE---V 63
             + +  ++VVLIG+  VGKS L   FA      +S    +G +   + + ++G+    +
Sbjct: 31  SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATII 90

Query: 64  KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVT 122
              +W+  G+  +  +     +     L+VY I+ R +F+       +L       ++  
Sbjct: 91  LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148

Query: 123 ILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
           ILVGNKSDL   REV+ +EG+A A      F+ETSA    NV   F+ +V ++      K
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  215 bits (550), Expect = 8e-72
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 2/172 (1%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
               K+V++G   VGKS L  +F +  F  +   TI   +      ++G   +  I DTA
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKI-CSVDGIPARLDILDTA 65

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSD 130
           GQE F A+   Y R   G LLV+ I+ RQ+F+ +G+   + L      +   +LVGNK+D
Sbjct: 66  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 125

Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
           L+  R+V  +E  A   +  + + E SA    NV  AF+ +V  +     ++
Sbjct: 126 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  215 bits (549), Expect = 8e-72
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           ++KV+L+G   VGKS L   F   E  P +    G  +    + ++G+E    ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTYDRS-IVVDGEEASLMVYDIWEQ 59

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLK 132
           +  R +           ++VY ++ + +F+       +L       +V  ILVGNKSDL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            +REV+  EG+A A      F+ETSA    NV A F+ VV +I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  211 bits (538), Expect = 4e-70
 Identities = 39/180 (21%), Positives = 82/180 (45%), Gaps = 12/180 (6%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYP--NSKSTIGVEFQTQKMDINGK---EVKAQIWD 69
            K++++G++  GK+ LL +  + +        +T+G++ +   + I  K   ++   +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 70  TAGQERFRAVTSAYYRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNK 128
            AG+E F +    +       L VYD+S+ Q   D++  WL  +   +  +   ILVG  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTH 121

Query: 129 SDLKDARE---VTTAEGKALAEAQGL-FFMETSALDSSNVTAAFQTVVTEIYN-ILSRKV 183
            D+ D ++     +   K L   +G     +   ++++  + A   +   I N  L+ K+
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKI 181

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  210 bits (536), Expect = 1e-69
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 12/188 (6%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKE---VKAQIWD 69
            ++VVLIG+  VGKS L   FA      +S    +G +   + + ++G+    +   +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 70  TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNK 128
             G+  +  +     +     L+VY I+ R +F+       +L       ++  ILVGNK
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123

Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQE 188
           SDL   REV+ +EG+A A      F+ETSA    NV   F+ +V ++     R    S+E
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV-----RLRRDSKE 178

Query: 189 LKQKDSSS 196
             ++  + 
Sbjct: 179 KNERRLAY 186

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  205 bits (524), Expect = 7e-68
 Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 7/184 (3%)

Query: 10  AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
            +    K+ ++G  +VGKS+L  +F   +F  +   TI   F    + +NG+E   Q+ D
Sbjct: 2   PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVD 60

Query: 70  TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNK 128
           TAGQ+ +      Y     G +LVY ++  ++F+ I     + L     + +  +LVGNK
Sbjct: 61  TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNK 120

Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQE 188
            DL   R ++  EGKALAE+    F+E+SA ++      F+ ++ E       K+  +  
Sbjct: 121 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA-----EKMDGACS 175

Query: 189 LKQK 192
             + 
Sbjct: 176 QGKS 179

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  203 bits (519), Expect = 4e-67
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 3/163 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           ++V + G   VGKS+L+ RF +  F  +   T+   ++   +  +      QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV-ISCDKSICTLQITDTTGSH 62

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNEL--HTHSDMNVVTILVGNKSDLK 132
           +F A+           +LVY I+ RQ+ + +     ++        ++  +LVGNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            +REV ++E +ALA      FMETSA  + NV   FQ ++   
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  202 bits (516), Expect = 1e-66
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 3/168 (1%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
              +K+V++GD  VGKS L  +F +  F  +   TI   +     +I+ +     + DTA
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKH-TEIDNQWAILDVLDTA 74

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSD 130
           GQE F A+   Y R   G L+VY ++ + +F+ + R+   +    D  +   ILV NK D
Sbjct: 75  GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 134

Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSS-NVTAAFQTVVTEIYN 177
           L   R+VT  +GK +A    + ++ETSA D   NV   F  +V  I  
Sbjct: 135 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  201 bits (515), Expect = 1e-66
 Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 3/162 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQ-VVIDGETCLLDILDTAGQE 62

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKD 133
            + A+   Y R   G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNKSDL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V + + + LA + G+ ++ETSA     V  AF T+V EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  202 bits (516), Expect = 2e-66
 Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
              ++VV+ G   VGKS+L+ RF +  F      TI   ++   +  +      QI DT 
Sbjct: 6   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQV-ISCDKSVCTLQITDTT 64

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH--THSDMNVVTILVGNKS 129
           G  +F A+           +LV+ ++ +Q+ + +G     +     S  ++  +LVGNK 
Sbjct: 65  GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC 124

Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN-ILSRKVMISQE 188
           D    REV T E +A+A+     FMETSA  + NV   FQ ++T      +S  +   + 
Sbjct: 125 DE-TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRS 183

Query: 189 LKQKDSSSFNGKTVVL 204
            KQK +    GK  ++
Sbjct: 184 GKQKRTDRVKGKCTLM 199

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  199 bits (509), Expect = 9e-66
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 2/162 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +KVV++G   VGKS L  +F    F      TI  +F  ++++++      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLKD 133
           +F ++   Y +   G +LVY +  +Q+F  I    ++ +       V  ILVGNK DL+ 
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            REV+++EG+ALAE  G  FMETSA   + V   F  +V ++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  197 bits (502), Expect = 2e-64
 Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
                + ++G    GKS L  +F    F       +   + ++   ++ + V  ++ DTA
Sbjct: 19  PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSE-ETVDHQPVHLRVMDTA 77

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTH---SDMNVVTILVGNK 128
             +  R     Y   A   L+VY +  RQ+FDS   +L  L  H   +  ++  +L+GNK
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136

Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSA-LDSSNVTAAFQTVVTEI 175
            D+   R+VT AEG ALA   G  F E SA LD  +V   F   V E 
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  196 bits (500), Expect = 2e-64
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI   ++ Q ++++ ++   +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTE 62

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLKD 133
           +F A+   Y +   G  LVY I+ + TF+ +     + L      +V  ILVGNK DL+D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 134 AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V   +G+ LA +     F+E+SA    NV   F  +V +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  197 bits (502), Expect = 2e-64
 Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 3/162 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQE 80

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
            + A+   Y R   G L V+ I+  ++F  I  +  ++    D  +V  +LVGNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R V T +   LA++ G+ F+ETSA     V  AF T+V EI
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  197 bits (502), Expect = 2e-64
 Identities = 59/180 (32%), Positives = 86/180 (47%), Gaps = 9/180 (5%)

Query: 10  AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
           A+    K+ + G + VGKS L+ RF    F      T+   ++ Q   I+ + V  +I D
Sbjct: 24  AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILD 82

Query: 70  TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNK 128
           TAGQE        + R   G +LVYDI+ R +F+ +    N         NV  ILVGNK
Sbjct: 83  TAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNK 141

Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSA-LDSSNVTAAFQTVVTEIYNILSRKVMISQ 187
           +DL  +R+V+T EG+ LA      F E SA     N+T  F  +  E+     R+  + Q
Sbjct: 142 ADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV-----RRRRMVQ 196

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  196 bits (501), Expect = 3e-64
 Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQE 63

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLKD 133
            + A+   Y R   G L V+ I+  ++F+ I  +  +        +V  +LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-P 122

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKD 193
           +R V T + + LA + G+ F+ETSA     V  AF T+V EI     RK         K 
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI-----RKHKEKMSKDGKK 177

Query: 194 SSS 196
              
Sbjct: 178 KKK 180

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  197 bits (502), Expect = 1e-60
 Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 12/181 (6%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM-------- 56
             E        KV LIGD   GK++LL +   + F P    T G+   T++         
Sbjct: 32  KGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEN 91

Query: 57  DINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS 116
           D   KE     WD  GQE   A    +   +   +L+ D     T  +   WL  +  + 
Sbjct: 92  DDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG 148

Query: 117 DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
                 I+V NK D   +  +   +      A    F   S  +   V +  +++ + + 
Sbjct: 149 G-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL 207

Query: 177 N 177
           +
Sbjct: 208 H 208

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  172 bits (438), Expect = 9e-55
 Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 11/165 (6%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            KV ++G+ + GKS L+ R+    +    +S  G  F  +++ ++G+     I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDL-- 131
             +     +       + V+ +    +F ++  +   L +  +   V  +LVG +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 132 KDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 175
            + R +  +  + L+       + ET A    NV   FQ V  ++
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  171 bits (436), Expect = 1e-54
 Identities = 33/179 (18%), Positives = 76/179 (42%), Gaps = 13/179 (7%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
             ++ ++GD+  GKS+L+ RF    +    + T   ++  ++M ++G+     I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY-KKEMLVDGQTHLVLIREEAGA 64

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNEL-----HTHSDMNVVTILVGNK 128
              +     +   A   + V+ +    +F ++ R   +L          + +  +   ++
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 129 SDLKDAREVTTAEGKAL-AEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMIS 186
                 R V  A  +AL A+ +   + ET A    NV   FQ V  ++  +  ++ +++
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  150 bits (380), Expect = 5e-46
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 6/181 (3%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           M   + +        K+V++GD AVGK+ LL  F++ E       T+   F         
Sbjct: 10  MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMK-YKN 68

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMN 119
           +E    +WDTAGQE +  +    Y  +   LL + ++ R +FD+I  +W  E+  + D  
Sbjct: 69  EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-T 127

Query: 120 VVTILVGNKSDLKD--AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEIY 176
             T+LVG K DL+   + +VT  EG  L +  G   ++E S++    +   F+  V  I+
Sbjct: 128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187

Query: 177 N 177
           +
Sbjct: 188 S 188

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  141 bits (358), Expect = 8e-43
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 10  AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
           +     K V +GD AVGK+ LL  +  + F  +   T+   F    + +NG  V   +WD
Sbjct: 4   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWD 62

Query: 70  TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNK 128
           TAGQE +  +    YRGA   +L + +  + +++++  +W+ EL  ++   V  +LVG K
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTK 121

Query: 129 SDLKDARE----------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVV 172
            DL+D ++          +TT +G+ L +  G   ++E S+    NV   F   +
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  137 bits (346), Expect = 1e-40
 Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 16/172 (9%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            KVVL+GD   GK++LL  FA   F  +   T+   +    + + GK V   IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +   +Y  A   LL +D++   +FD+I  RW  E++      V  I+VG K+DL+ 
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRK 152

Query: 134 ARE------------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVV 172
            +             VT   G+ +A + G   ++E SA    NV A FQ   
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  135 bits (343), Expect = 4e-40
 Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 12/196 (6%)

Query: 10  AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
           +     K V +GD AVGK+ +L  +  ++F  +   T+   F      ++G+ V   +WD
Sbjct: 5   SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGQIVNLGLWD 63

Query: 70  TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNK 128
           TAGQE +  +    YRGA   +L + +  + +++++  +W+ EL   +  NV  +LVG K
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTK 122

Query: 129 SDLKDARE--------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEIYNIL 179
            DL+D +         +T+ +G+ L +  G   ++E S+    NV A F T +  +    
Sbjct: 123 LDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182

Query: 180 SRKVMISQELKQKDSS 195
            RK +  +    + S 
Sbjct: 183 RRKEVPRRRKNHRRSG 198

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  134 bits (340), Expect = 7e-40
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
                      K+V++GD A GK+ LL  F++D+F      T+  E     ++++GK+V+
Sbjct: 16  PRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVE 74

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTI 123
             +WDTAGQE +  +    Y      L+ + I    + ++I  +W  E+      NV  I
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPII 133

Query: 124 LVGNKSDLKDARE------------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQT 170
           LVGNK DL+                V + EG+ +A     F ++E SA     V   F+ 
Sbjct: 134 LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEM 193

Query: 171 VV 172
             
Sbjct: 194 AT 195

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  132 bits (334), Expect = 6e-39
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GD A GK+ LL  F++DEF      T+   +      ++GK+V+  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIE-VDGKQVELALWDTAGQED 85

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           +  +    Y      L+ + +    + ++I  +W+ E+      NV  ILV NK DL+  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSD 144

Query: 135 RE------------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVV 172
                         V T +G+A+A     + ++E SA     V   F+T  
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETAT 195

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  131 bits (331), Expect = 2e-38
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+  +  +  + ++GK V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
            +  +    Y      L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148

Query: 134 ARE------------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVV 172
            ++            +T  +G A+A+  G   ++E SAL    +   F   +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  129 bits (327), Expect = 8e-38
 Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 17/184 (9%)

Query: 4   YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEV 63
            S  D  ++   K+V++GDS  GK+ LL  FA+D F  N   T+   +      I+ + +
Sbjct: 18  GSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFE-IDTQRI 76

Query: 64  KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVT 122
           +  +WDT+G   +  V    Y  +   L+ +DISR +T DS+  +W  E+      N   
Sbjct: 77  ELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKM 135

Query: 123 ILVGNKSDLKDARE------------VTTAEGKALAEAQGLF-FMETSALDSSN-VTAAF 168
           +LVG KSDL+                V+  +G  +A+  G   ++E SAL S N V   F
Sbjct: 136 LLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

Query: 169 QTVV 172
               
Sbjct: 196 HVAT 199

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  126 bits (318), Expect = 8e-37
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 17/172 (9%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GDS  GK+ LL  FA+D F  N   T+   +      I+ + ++  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFE-IDTQRIELSLWDTSGSPY 67

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           +  V    Y  +   L+ +DISR +T DS+  +W  E+      N   +LVG KSDL+  
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 126

Query: 135 RE------------VTTAEGKALAEAQGLF-FMETSALDSSN-VTAAFQTVV 172
                         V+  +G  +A+  G   ++E SAL S N V   F    
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVAT 178

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  125 bits (315), Expect = 3e-36
 Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 16/171 (9%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K V++GD AVGK+ LL  +  + F      T+  +  +  + ++GK V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA 134
           +  +    Y     +L+ + +    +F+++  +W  E+  H   N   ILVG K DL+D 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDD 124

Query: 135 RE------------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVV 172
           ++            +T  +G A+A+  G   ++E SAL    +   F   +
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  125 bits (315), Expect = 4e-36
 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 16/182 (8%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
                AE    K VL+GD AVGK++L+  +  + +      T   +  +  + ++G+ V+
Sbjct: 11  GRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVR 69

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTI 123
            Q+ DTAGQ+ F  +    Y      LL + +    +F ++  +W+ E+  H       I
Sbjct: 70  LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPII 128

Query: 124 LVGNKSDLKDARE------------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQT 170
           LVG +SDL++  +            V     K LAE      ++E SAL   N+   F  
Sbjct: 129 LVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188

Query: 171 VV 172
            +
Sbjct: 189 AI 190

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  124 bits (313), Expect = 1e-35
 Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 17/197 (8%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING 60
           + F     +      K+VL+GD   GK+ +L   A+D +      T+   +         
Sbjct: 14  LYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLE-TEE 72

Query: 61  KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMN 119
           + V+  +WDT+G   +  V    Y  +   LL +DISR +T DS   +W  E+  +   +
Sbjct: 73  QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-S 131

Query: 120 VVTILVGNKSDLKDARE------------VTTAEGKALAEAQGLF-FMETSALDS-SNVT 165
              +L+G K+DL+                ++  +G A+A+  G   ++E SA  S  ++ 
Sbjct: 132 TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIH 191

Query: 166 AAFQTVVTEIYNILSRK 182
           + F+T      N  S  
Sbjct: 192 SIFRTASMLCLNKPSPL 208

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  121 bits (306), Expect = 7e-35
 Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 5   SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
           S        + K V++GD AVGK+ LL  +A D F      T+  +     + + GK+  
Sbjct: 9   SMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYL 67

Query: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTI 123
             ++DTAGQE +  +    Y      L+ + +    +F ++   W+ EL  ++  NV  +
Sbjct: 68  LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFL 126

Query: 124 LVGNKSDLKDARE------------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQT 170
           L+G + DL+D  +            +   +G+ LA+  G   ++E SAL    +   F  
Sbjct: 127 LIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186

Query: 171 VV 172
            +
Sbjct: 187 AI 188

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  119 bits (299), Expect = 3e-33
 Identities = 48/220 (21%), Positives = 74/220 (33%), Gaps = 66/220 (30%)

Query: 21  GDSAVGKSNLLARFAR---DEFYPNSKSTIG-VEF--------------QTQKMDINGKE 62
           G   +GKS L  RF R   DEF+ +  S +   +F              +  +   +  E
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 63  VKAQIW-------DTAGQERFRAVTSAYYRGAV--------------------------- 88
            K  I        D   Q         Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 89  ----------GALLVYDISR--RQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAR 135
                     G LL  D+SR   + FD   ++++ L+   +      ++V  K D    R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 136 EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            +  A   AL++ + L  +ETSA  + NV  AF T+V  I
Sbjct: 215 YIRDAHTFALSK-KNLQVVETSARSNVNVDLAFSTLVQLI 253

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 88.3 bits (219), Expect = 6e-22
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 21/199 (10%)

Query: 1   MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKS-----------TIGV 49
           M+  +  +R  +  FK+V  G    GK+  L      +     K            T+  
Sbjct: 3   MSTINFANR--EINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFF 59

Query: 50  EFQTQKMD-INGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRW 108
           +F    +  + G + +  ++   GQ  + A      RG  G + V D +  +   +    
Sbjct: 60  DFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESM 119

Query: 109 LNELHT----HSDMNVVTILVG-NKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN 163
            N           ++ V I++  NK DL DA  V       +        +E  A +   
Sbjct: 120 RNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVR-AVVDPEGKFPVLEAVATEGKG 178

Query: 164 VTAAFQTVVTEIYNILSRK 182
           V    + V   +   ++  
Sbjct: 179 VFETLKEVSRLVLARVAGG 197

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 89.7 bits (222), Expect = 2e-21
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 16/179 (8%)

Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
           D A   L K V++GD AVGK+ LL  +  + F P        +  +  + ++GK V   +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGL 207

Query: 68  WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVG 126
           WDTAG E +  +    Y      L+ + +    +F  +  +W  E+  H   N   ILVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVG 266

Query: 127 NKSDLKDARE------------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVV 172
            K DL+D ++            +T  +G A+A+  G   ++E SAL    +   F   +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 71.4 bits (176), Expect = 8e-16
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 20/171 (11%)

Query: 15  FKVVLIG-DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
            ++ L+G   + GK+  +   A  +F  +   T+G  F  +K+      V  ++WD  GQ
Sbjct: 23  MELTLVGLQYS-GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQ 77

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLK 132
            RFR++   Y RG    + + D + ++  ++    L+ L     +  + +LV GNK DL 
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137

Query: 133 DAREVTTAEGKALAEAQGL--------FFMETSALDSSNVTAAFQTVVTEI 175
            A  +   E   L E   L             S  +  N+    Q ++   
Sbjct: 138 GA--LDEKE---LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 21/171 (12%)

Query: 15  FKVVLIG-DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
            +V+++G D+A GK+++L R    +       T+G     + +      +  ++WD  GQ
Sbjct: 23  IRVLMLGLDNA-GKTSILYRLHLGDVVTTV-PTVG--VNLETLQYKN--ISFEVWDLGGQ 76

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLK 132
              R     Y+      + V D + R         L  L    ++    +L+  NK DL 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136

Query: 133 DAREVTTAEGKALAEAQGL--------FFMETSALDSSNVTAAFQTVVTEI 175
           DA   + AE   +AE  G+          +++S+     +      +V  +
Sbjct: 137 DA--ASEAE---IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 19/170 (11%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L R    E    +  TIG  F  + +      +K Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKN--LKFQVWDLGGLT 62

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
             R     YY      + V D   R         L  +    ++    ++V  NK D++ 
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122

Query: 134 AREVTTAEGKALAEAQGL--------FFMETSALDSSNVTAAFQTVVTEI 175
           A  +T++E   +A + GL           +TSA   + +  A + +V  +
Sbjct: 123 A--MTSSE---MANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 22/178 (12%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L R    E    +K TIG  F  + +      +K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN--LKLNVWDLGGQT 73

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
             R     YY      + V D + +    +  + L+ +    ++    +LV  NK D   
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133

Query: 134 AREVTTAEGKALAEAQGL--------FFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
           A  ++ +E   +++   L          + +SA+    +T     ++     I   ++
Sbjct: 134 A--LSASE---VSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLID---VIKEEQL 183

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 35/170 (20%), Positives = 72/170 (42%), Gaps = 19/170 (11%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    E    +  TIG  F  + ++   K +   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNICFTVWDVGGQD 84

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   Y++   G + V D + R+        L ++    ++    +LV  NK D+ +
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144

Query: 134 AREVTTAEGKALAEAQGL--------FFMETSALDSSNVTAAFQTVVTEI 175
           A  +  +E   L +  GL        +   T A   + +      +  E+
Sbjct: 145 A--MPVSE---LTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 66.4 bits (163), Expect = 4e-14
 Identities = 36/177 (20%), Positives = 74/177 (41%), Gaps = 24/177 (13%)

Query: 16  KVVLIG-DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +++++G D+A GK+ +L +    E    +  TIG  F  + ++     +   +WD  GQ+
Sbjct: 2   RILMVGLDAA-GKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ISFTVWDVGGQD 55

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   Y++   G + V D + R+  +     L  +    ++    +LV  NK DL +
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115

Query: 134 AREVTTAEGKALAEAQGL--------FFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
           A  +  AE   + +  GL        +   T A     +      +      + ++K
Sbjct: 116 A--MNAAE---ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN---QLRNQK 164

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 66.9 bits (164), Expect = 4e-14
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            KV+++G    GK+ +L +F+ +E   ++  TIG     +++ IN    +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQE 71

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
             R+  + YY      ++V D + R+        L ++  H D+    +L+  NK D+K+
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131

Query: 134 AREVTTAEGKALAEAQGL--------FFMETSALDSSNVTAAFQTVVTEI 175
              +T AE   +++   L              AL    +    + +++ +
Sbjct: 132 C--MTVAE---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 66.5 bits (163), Expect = 7e-14
 Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 23/174 (13%)

Query: 15  FKVVLIG-DSAVGKSNLLARFARDEFYPNSKS-TIGVEFQTQKMDINGKEVKAQIWDTAG 72
             V+ +G D++ GK+ ++ +         +   TIG  F  +K   +   +   ++D +G
Sbjct: 22  VHVLCLGLDNS-GKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSG 76

Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV--VTILV-GNKS 129
           Q R+R +   YY+     + V D S R         L+ L  H D+    + IL   NK 
Sbjct: 77  QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136

Query: 130 DLKDAREVTTAEGKALAEAQGL--------FFMETSALDSSNVTAAFQTVVTEI 175
           DL+DA  VT+ +   +++   L            + A+    +      +  +I
Sbjct: 137 DLRDA--VTSVK---VSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 21/171 (12%)

Query: 15  FKVVLIG-DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
            KV+++G D+A GK+ +L +F+ +E   ++  TIG     +++ IN    +  +WD  GQ
Sbjct: 22  HKVIIVGLDNA-GKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQ 75

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLK 132
           E  R+  + YY      ++V D + R+        L ++  H D+    +L+  NK D+K
Sbjct: 76  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135

Query: 133 DAREVTTAEGKALAEAQGL--------FFMETSALDSSNVTAAFQTVVTEI 175
           +   +T AE   +++   L              AL    +    + +++ +
Sbjct: 136 EC--MTVAE---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 65.8 bits (160), Expect = 1e-13
 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 26/180 (14%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNS----KSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           +++L+G    GKS++  +    +  PN     +ST  +             V  QIWD  
Sbjct: 22  RILLMGLRRSGKSSIQ-KVVFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIWDFP 77

Query: 72  GQERFRAVTS---AYYRGAVGALLVYDISRRQT--FDSIGRWLNELHTHSDMNVVTILVG 126
           GQ  F   T      +RG    + V D           +   +++ +  +      + + 
Sbjct: 78  GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI- 136

Query: 127 NKSDL--KDAREVTTAE---------GKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           +K D    D +  T  +           A  E   L F  TS  D S +  AF  VV ++
Sbjct: 137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFEAFSKVVQKL 195

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 19/170 (11%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +F  ++    S  T+G  F  + ++  G   K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLG--FNIKTLEHRG--FKLNIWDVGGQK 73

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
             R+    Y+    G + V D + RQ      R L  L     +   T+L+  NK DL  
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133

Query: 134 AREVTTAEGKALAEAQGL--------FFMETSALDSSNVTAAFQTVVTEI 175
           A  ++      + EA  L             SA+   ++      ++ +I
Sbjct: 134 A--LSCNA---IQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 21/171 (12%)

Query: 15  FKVVLIG-DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
            +++L+G D+A GK+ LL + A ++   +   T G  F  + +   G   K  +WD  GQ
Sbjct: 17  VRILLLGLDNA-GKTTLLKQLASEDI-SHITPTQG--FNIKSVQSQG--FKLNVWDIGGQ 70

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLK 132
            + R    +Y+      + V D + R+ F+  G+ L EL     ++ V +L+  NK DL 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 133 DAREVTTAEGKALAEAQGL--------FFMETSALDSSNVTAAFQTVVTEI 175
            A     +E   +AE   L             SAL    V      V   +
Sbjct: 131 TA--APASE---IAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 63.1 bits (153), Expect = 4e-12
 Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 27/182 (14%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNS----KSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           K++L+G S  GKS++        +         +TI VE    +       +   +WD  
Sbjct: 5   KLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRFL---GNMTLNLWDCG 60

Query: 72  GQERFRAVT-----SAYYRGAVGALLVYDISRRQTFDSIGRW---LNELHTHSDMNVVTI 123
           GQ+ F            ++     + V+D+   +    I  +   L +L  +S    + +
Sbjct: 61  GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120

Query: 124 LVGNKSDL--KDAREVTTAEGKALAE-------AQGLFFMETSALDSSNVTAAFQTVVTE 174
           L+ +K DL   D RE                     L    TS  D S +  A+  +V  
Sbjct: 121 LL-HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDES-LYKAWSQIVCS 178

Query: 175 IY 176
           + 
Sbjct: 179 LI 180

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 61.1 bits (149), Expect = 8e-12
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 13/144 (9%)

Query: 16  KVVLIG-DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           K+V +G D+A GK+ LL     D        T+     ++++ I G  +    +D  G  
Sbjct: 27  KLVFLGLDNA-GKTTLLHMLKDDRLG-QHVPTLH--PTSEELTIAG--MTFTTFDLGGHI 80

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R V   Y     G + + D +  +        L+ L T   +  V IL+ GNK D  +
Sbjct: 81  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140

Query: 134 AREVTTAEGKALAEAQGLFFMETS 157
           A  ++      L E  GL+   T 
Sbjct: 141 A--ISEER---LREMFGLYGQTTG 159

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 16  KVVLIG-DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           K++ +G D+A GK+ LL     D      + T      ++++ I    +K   +D  G  
Sbjct: 25  KLLFLGLDNA-GKTTLLHMLKNDRLA-TLQPTWH--PTSEELAIGN--IKFTTFDLGGHI 78

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
           + R +   Y+    G + + D +  + FD     L+ L   +++  V  ++ GNK D  +
Sbjct: 79  QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138

Query: 134 AREVTTAEGKALAEAQGL 151
           A  V+ AE   L  A GL
Sbjct: 139 A--VSEAE---LRSALGL 151

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 7/128 (5%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
            V+ +G    GK+ L  R    ++  +++++I       K++ N +     + D  G E 
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHES 66

Query: 76  FRA-VTSAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDM--NVVTILV-GNKSD 130
            R  +   +   A   + V D +  Q     +  +L ++   S    N  ++L+  NK D
Sbjct: 67  LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD 126

Query: 131 LKDAREVT 138
           +  A+   
Sbjct: 127 IAMAKSAK 134

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 56.8 bits (137), Expect = 8e-10
 Identities = 35/180 (19%), Positives = 71/180 (39%), Gaps = 22/180 (12%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
               +++++G  A GK+ +L +    E       TIG  F  + ++     +   +WD  
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ISFTVWDVG 217

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSD 130
           GQ++ R +   Y++   G + V D + R+  +     L  +    ++    +LV  NK D
Sbjct: 218 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 277

Query: 131 LKDAREVTTAEGKALAEAQGL--------FFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
           L +A  +  AE   + +  GL        +   T A     +      +      + ++K
Sbjct: 278 LPNA--MNAAE---ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN---QLRNQK 329

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 15/132 (11%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
            +++ G    GK++LL     D   P   S   +         +       + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS------AADYDGSGVTLVDFPGHVK 103

Query: 76  FRAVTSAYYRGAVGAL--LVYDI---SRRQTFDSIGRWLNEL---HTHSDMNVVTILV-G 126
            R   S Y +     +  L++ +      +   +   +L ++      S  N + IL+  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163

Query: 127 NKSDLKDAREVT 138
           NKS+L  AR  +
Sbjct: 164 NKSELFTARPPS 175

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 15/131 (11%)

Query: 17  VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF 76
           +++ G    GK++LL     D   P   S   +         +       + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS------AADYDGSGVTLVDFPGHVKL 68

Query: 77  RAVTSAYYRGAVGAL--LVYDI---SRRQTFDSIGRWLNELHTH---SDMNVVTILV-GN 127
           R   S Y +     +  L++ +      +   +   +L ++ +    S  N + IL+  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 128 KSDLKDAREVT 138
           KS+L  AR  +
Sbjct: 129 KSELFTARPPS 139

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 48.1 bits (114), Expect = 7e-07
 Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 20/176 (11%)

Query: 17  VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF 76
           V+L+G    GKS++  +       P     +           +   +   + +  GQ  +
Sbjct: 2   VLLMGVRRCGKSSIC-KVVFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNY 59

Query: 77  RAVT---SAYYRGAVGALLVYDISR--RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
              +      ++     + V D          ++   +   +  +    + +L+ +K D 
Sbjct: 60  FEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLI-HKVDG 118

Query: 132 -------KDAREVTTAEGKALAEAQG----LFFMETSALDSSNVTAAFQTVVTEIY 176
                     R++    G+ L E       + F  TS  D S +  AF  +V ++ 
Sbjct: 119 LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHS-IYEAFSRIVQKLI 173

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 27/188 (14%), Positives = 49/188 (26%), Gaps = 48/188 (25%)

Query: 6   EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDE----------FY-----PNSKSTIGVE 50
            E R       V++ G    GK+ +                  F+      NS  T+   
Sbjct: 145 LELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 51  FQT--QKMDINGKEVKAQIWDT-----AGQERFRA--VTSAYYRGAVGALLVYD-ISRRQ 100
            Q    ++D N         +      + Q   R    +  Y       LLV   +   +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----CLLVLLNVQNAK 257

Query: 101 TFDS------IGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-- 152
            +++      I      L T     V   L    +          +      E + L   
Sbjct: 258 AWNAFNLSCKI------LLTTRFKQVTDFLSAATT--THISLDHHSMTLTPDEVKSLLLK 309

Query: 153 FMETSALD 160
           +++    D
Sbjct: 310 YLDCRPQD 317

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 39/198 (19%), Positives = 77/198 (38%), Gaps = 33/198 (16%)

Query: 11  EDYLFKVVLIGDSAVGKSNLLARFARDEF----YPNSKSTIGV------EFQTQKMDING 60
           +  +  VV+ G   VGKS LL      +     YP +   I V       F+ Q +D  G
Sbjct: 164 DLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPG 223

Query: 61  KEVKAQIWDTAGQER----FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS 116
                 + D    ER     +A+ +  Y G +  + ++D S       +   ++      
Sbjct: 224 ------LLDRPISERNEIEKQAILALRYLGNL-IIYIFDPSE-HCGFPLEEQIHLFEEVH 275

Query: 117 D--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174
               ++  ++V NK D+ D   +     +   + +GL  ++ SAL  + +      V  E
Sbjct: 276 GEFKDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGI----DLVKEE 329

Query: 175 IYNILSRKVMISQELKQK 192
           I   L     +++++ ++
Sbjct: 330 IIKTLRP---LAEKVARE 344

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.98
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.98
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.98
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.93
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.9
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.89
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.88
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.87
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.87
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.87
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.86
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.86
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.86
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.86
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.86
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.86
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.85
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.85
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.85
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.84
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.83
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.83
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.83
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.83
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.83
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.83
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.83
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.82
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.82
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.82
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.82
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.81
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.8
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.8
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.8
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.79
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.79
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.77
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.77
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.77
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.76
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.76
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.76
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.75
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.75
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.74
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.74
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.74
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.72
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.72
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.7
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.7
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.66
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.65
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.65
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.63
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.62
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.62
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.6
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.58
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.58
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.56
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.55
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.51
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.51
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.5
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.49
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.47
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.42
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.42
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.31
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.31
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.16
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.0
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.97
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.92
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.91
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.85
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.84
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.84
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.81
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.79
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.72
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.6
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.5
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.38
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.22
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.21
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.19
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.18
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.16
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.05
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.01
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.88
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.84
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.79
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.55
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.46
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.43
2xxa_A	433	Signal recognition particle protein; protein trans	97.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.39
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.37
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.35
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.31
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.21
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.21
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.2
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.17
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.15
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.14
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.13
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.11
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.11
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.1
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.08
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.06
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.05
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.05
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.05
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.01
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.99
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.98
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.97
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.97
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.97
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.96
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.94
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.94
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.93
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.92
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.92
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.92
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.91
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.91
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.9
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.88
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.88
1g6h_A	257	High-affinity branched-chain amino acid transport	96.87
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.86
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.86
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.85
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.85
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.85
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.85
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.85
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.85
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.84
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.83
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.83
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.83
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.82
3co5_A	143	Putative two-component system transcriptional RES	96.82
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.81
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.81
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.81
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.81
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.8
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.8
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.79
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.79
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.78
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.77
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.77
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.77
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.77
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.76
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.76
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.75
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.75
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.74
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.74
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.73
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.73
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.72
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.71
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.7
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.69
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.69
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.69
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.69
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.69
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.69
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.68
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.66
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.66
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.66
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.66
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.65
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.62
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.62
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.62
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.6
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.6
1via_A	175	Shikimate kinase; structural genomics, transferase	96.59
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.59
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.58
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.57
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.57
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.56
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.56
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.55
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.55
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.54
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.54
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.54
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.53
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.52
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.51
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.51
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.5
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.5
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.5
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.49
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.49
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.48
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.48
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.47
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.46
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.46
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.46
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.46
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.44
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.44
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.43
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.43
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.43
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.41
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.41
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.4
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.39
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.39
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.39
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.39
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.39
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.38
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.37
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.37
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.36
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.35
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.35
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.34
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.34
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.33
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.33
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.32
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.32
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.31
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.31
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.3
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.28
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.28
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.28
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.28
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.26
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.25
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.25
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.24
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.23
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.23
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.22
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.21
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.21
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.2
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.2
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.18
3bos_A	242	Putative DNA replication factor; P-loop containing	96.16
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.16
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.11
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.1
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.1
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.09
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.09
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.08
2og2_A	359	Putative signal recognition particle receptor; nuc	96.08
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.06
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.05
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.03
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.03
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.01
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.98
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.98
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.96
3uc9_A	233	Increased recombination centers protein 6; rossman	95.95
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.93
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.92
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.89
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.87
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.86
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.86
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.85
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.84
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.84
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.83
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.82
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.82
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.8
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.8
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.75
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.74
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.71
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.71
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.69
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.68
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.68
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.65
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.64
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.59
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.59
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.58
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.58
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.54
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.51
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.5
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.49
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.48
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.44
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.42
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.41
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.41
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.41
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.41
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.41
2qgz_A	308	Helicase loader, putative primosome component; str	95.4
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.39
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.39
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.38
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.36
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.35
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.34
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.34
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.33
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.32
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.32
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.3
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.29
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.27
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.27
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.26
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.25
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.24
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.22
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.18
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.18
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.15
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.09
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.09
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.08
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.08
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.07
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.06
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.05
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.04
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.0
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.99
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.99
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.98
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.97
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.96
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.95
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.93
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.88
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.86

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=5.6e-43  Score=267.89  Aligned_cols=166  Identities=36%  Similarity=0.692  Sum_probs=145.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      .+.+||+|+|++|||||||+++|+.+.+...+.+|++.++....+.+++..+.+.||||+|++++..++..+++.++++|
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|||++++.||+.+..|+..+......+.|++|||||+|+.+.+.++.++++.+++.++++|++|||++|.||+++|+.|
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i  170 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  170 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999987766689999999999999888999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027417          172 VTEIYN  177 (223)
Q Consensus       172 ~~~~~~  177 (223)
                      ++.+..
T Consensus       171 ~~~i~~  176 (216)
T 4dkx_A          171 AAALPG  176 (216)
T ss_dssp             HHHC--
T ss_pred             HHHHHh
Confidence            887754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=3.7e-36  Score=228.52  Aligned_cols=173  Identities=49%  Similarity=0.822  Sum_probs=158.7

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      ..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            45678999999999999999999999998888888888888888888889999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999877666899999999999988778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 027417          170 TVVTEIYNILSRK  182 (223)
Q Consensus       170 ~l~~~~~~~~~~~  182 (223)
                      +|.+.+.+.....
T Consensus       164 ~l~~~i~~~~~~~  176 (206)
T 2bcg_Y          164 TMARQIKESMSQQ  176 (206)
T ss_dssp             HHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHhhc
Confidence            9999987765544

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-37  Score=235.79  Aligned_cols=175  Identities=58%  Similarity=0.923  Sum_probs=147.9

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      ..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (223)
T 3cpj_B            9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG   88 (223)
T ss_dssp             -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred             CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence            34678999999999999999999999998888888888888888888889888999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus        89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  168 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE  168 (223)
T ss_dssp             EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999877666799999999999987777888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 027417          170 TVVTEIYNILSRKVM  184 (223)
Q Consensus       170 ~l~~~~~~~~~~~~~  184 (223)
                      +|++.+.+.......
T Consensus       169 ~l~~~i~~~~~~~~~  183 (223)
T 3cpj_B          169 ELINTIYQKVSKHQM  183 (223)
T ss_dssp             HHHHHHTTCC-----
T ss_pred             HHHHHHHHHhhhccc
Confidence            999998877665554

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=3.6e-35  Score=222.72  Aligned_cols=177  Identities=35%  Similarity=0.521  Sum_probs=149.5

Q ss_pred             CCccccccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchh
Q 027417            1 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT   80 (223)
Q Consensus         1 m~~~~~~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~   80 (223)
                      |.............++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++
T Consensus         1 m~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   79 (206)
T 2bov_A            1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIR   79 (206)
T ss_dssp             ----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred             CCcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHH
Confidence            444444555666789999999999999999999999888777777766554 4566778888999999999999999999


Q ss_pred             HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027417           81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL  159 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (223)
                      ..+++.+|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+++..++...+++++++||+
T Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (206)
T 2bov_A           80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK  159 (206)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCC
Confidence            999999999999999999999999999999987654 3479999999999998777788999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027417          160 DSSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       160 ~~~~i~~~~~~l~~~~~~~  178 (223)
                      +|.|++++|++|++.+.++
T Consensus       160 ~g~gi~~l~~~l~~~i~~~  178 (206)
T 2bov_A          160 TRANVDKVFFDLMREIRAR  178 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHc
Confidence            9999999999999988654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=2e-35  Score=220.24  Aligned_cols=174  Identities=46%  Similarity=0.835  Sum_probs=128.9

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ...+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (183)
T 2fu5_C            3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   82 (183)
T ss_dssp             CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence            34567899999999999999999999988877777788888888888888988999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  162 (183)
T 2fu5_C           83 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF  162 (183)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999987765679999999999998777888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 027417          169 QTVVTEIYNILSRK  182 (223)
Q Consensus       169 ~~l~~~~~~~~~~~  182 (223)
                      ++|++.+.+...+.
T Consensus       163 ~~l~~~i~~~~~~~  176 (183)
T 2fu5_C          163 FTLARDIKAKMDKN  176 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999887765543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.9e-35  Score=220.44  Aligned_cols=174  Identities=43%  Similarity=0.756  Sum_probs=157.5

Q ss_pred             cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417            8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (223)
Q Consensus         8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   87 (223)
                      ....+..++|+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus        20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (201)
T 2ew1_A           20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   99 (201)
T ss_dssp             --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence            34567789999999999999999999999988888888888888888888999999999999999999999999999999


Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..+++..++...+++++++||++|.|++++
T Consensus       100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  179 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL  179 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998776668999999999999877778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027417          168 FQTVVTEIYNILSR  181 (223)
Q Consensus       168 ~~~l~~~~~~~~~~  181 (223)
                      |++|++.+.++..+
T Consensus       180 ~~~l~~~i~~~~~~  193 (201)
T 2ew1_A          180 FLDLACRLISEARQ  193 (201)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999988776543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=216.30  Aligned_cols=174  Identities=46%  Similarity=0.798  Sum_probs=159.0

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   86 (223)
                      +....+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus         9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   88 (196)
T 3tkl_A            9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG   88 (196)
T ss_dssp             --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTT
T ss_pred             cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhh
Confidence            34455778999999999999999999999998888888888888888888899999999999999999999999999999


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  168 (196)
T 3tkl_A           89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ  168 (196)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            99999999999999999999999999887777899999999999998888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027417          167 AFQTVVTEIYNILS  180 (223)
Q Consensus       167 ~~~~l~~~~~~~~~  180 (223)
                      +|++|++.+.+...
T Consensus       169 l~~~l~~~i~~~~~  182 (196)
T 3tkl_A          169 SFMTMAAEIKKRMG  182 (196)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999988866543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=2e-34  Score=216.55  Aligned_cols=175  Identities=51%  Similarity=0.860  Sum_probs=154.5

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   86 (223)
                      +.......+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.
T Consensus        14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   93 (191)
T 2a5j_A           14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG   93 (191)
T ss_dssp             CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence            33455778999999999999999999999998887777888888888888889989999999999999999999999999


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|+++
T Consensus        94 ~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  173 (191)
T 2a5j_A           94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEE  173 (191)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999999999877666899999999999987777888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 027417          167 AFQTVVTEIYNILSR  181 (223)
Q Consensus       167 ~~~~l~~~~~~~~~~  181 (223)
                      +|++|++.+.+++.+
T Consensus       174 l~~~l~~~i~~~~~~  188 (191)
T 2a5j_A          174 AFINTAKEIYRKIQQ  188 (191)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999988776543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=213.90  Aligned_cols=176  Identities=43%  Similarity=0.741  Sum_probs=155.9

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   86 (223)
                      |....+..++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            34556788999999999999999999999998888888888888888888899999999999999999999999999999


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      +|++|+|+|++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE  160 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            9999999999999999999999999877654 799999999999988778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 027417          167 AFQTVVTEIYNILSRKV  183 (223)
Q Consensus       167 ~~~~l~~~~~~~~~~~~  183 (223)
                      +|++|.+.+.+...++.
T Consensus       161 l~~~l~~~~~~~~~~~~  177 (181)
T 3tw8_B          161 MFNCITELVLRAKKDNL  177 (181)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999998877766554

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=219.76  Aligned_cols=173  Identities=49%  Similarity=0.794  Sum_probs=147.0

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   86 (223)
                      +....+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.
T Consensus        22 ~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  101 (201)
T 2hup_A           22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS  101 (201)
T ss_dssp             ----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred             cccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence            34456778999999999999999999999988877777887878878888888888999999999999999999999999


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVT  165 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  165 (223)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...++ +++++||+++.|++
T Consensus       102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  181 (201)
T 2hup_A          102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVE  181 (201)
T ss_dssp             CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999999877666899999999999987777889999999999999 89999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027417          166 AAFQTVVTEIYNIL  179 (223)
Q Consensus       166 ~~~~~l~~~~~~~~  179 (223)
                      ++|++|++.+.+..
T Consensus       182 ~l~~~l~~~i~~~~  195 (201)
T 2hup_A          182 EAFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999886654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=216.31  Aligned_cols=173  Identities=58%  Similarity=0.947  Sum_probs=157.5

Q ss_pred             cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417            8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (223)
Q Consensus         8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   87 (223)
                      .+..+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+
T Consensus        19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   98 (193)
T 2oil_A           19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA   98 (193)
T ss_dssp             -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            34567789999999999999999999999988877788888888888888888999999999999999999999999999


Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++
T Consensus        99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  178 (193)
T 2oil_A           99 VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELA  178 (193)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998776668999999999999877778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027417          168 FQTVVTEIYNILS  180 (223)
Q Consensus       168 ~~~l~~~~~~~~~  180 (223)
                      |++|++.+.+++.
T Consensus       179 ~~~l~~~i~~~~~  191 (193)
T 2oil_A          179 FETVLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998877654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.5e-34  Score=214.67  Aligned_cols=175  Identities=47%  Similarity=0.785  Sum_probs=158.4

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   86 (223)
                      |....+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus         3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   82 (186)
T 2bme_A            3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG   82 (186)
T ss_dssp             -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence            34456788999999999999999999999998888888888888888888889988999999999999999999999999


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (186)
T 2bme_A           83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE  162 (186)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence            99999999999999999999999988776666899999999999987677888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 027417          167 AFQTVVTEIYNILSR  181 (223)
Q Consensus       167 ~~~~l~~~~~~~~~~  181 (223)
                      +|++|++.+.+....
T Consensus       163 l~~~l~~~~~~~~~~  177 (186)
T 2bme_A          163 AFVQCARKILNKIES  177 (186)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999988776543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=3.3e-34  Score=214.93  Aligned_cols=173  Identities=45%  Similarity=0.779  Sum_probs=156.9

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   86 (223)
                      .....+..++|+|+|++|||||||+++|++..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.
T Consensus        15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   94 (189)
T 2gf9_A           15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG   94 (189)
T ss_dssp             CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred             CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence            34455678999999999999999999999998887778888888888888888889999999999999999999999999


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|+++
T Consensus        95 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  174 (189)
T 2gf9_A           95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQ  174 (189)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            99999999999999999999999999877656799999999999987777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027417          167 AFQTVVTEIYNIL  179 (223)
Q Consensus       167 ~~~~l~~~~~~~~  179 (223)
                      +|++|++.+.+.+
T Consensus       175 l~~~l~~~i~~~~  187 (189)
T 2gf9_A          175 VFERLVDVICEKM  187 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=6.3e-34  Score=215.62  Aligned_cols=172  Identities=43%  Similarity=0.773  Sum_probs=157.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            45789999999999999999999999988877788888888888888898999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  164 (203)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998776567999999999999887788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 027417          171 VVTEIYNILSRK  182 (223)
Q Consensus       171 l~~~~~~~~~~~  182 (223)
                      |++.+.+.+...
T Consensus       165 l~~~i~~~~~~~  176 (203)
T 1zbd_A          165 LVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999888766544

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=2.1e-34  Score=218.77  Aligned_cols=172  Identities=35%  Similarity=0.628  Sum_probs=150.3

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      .....++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            45678999999999999999999999998888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEEccCCCCCH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVGNKSDLKDAREVTTAEGKALAE-AQGLFFMETSALDSSNV  164 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i  164 (223)
                      +|+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999988765432    468999999999998 35667788888887 66789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 027417          165 TAAFQTVVTEIYNILSRK  182 (223)
Q Consensus       165 ~~~~~~l~~~~~~~~~~~  182 (223)
                      +++|++|++.+.++....
T Consensus       163 ~~l~~~l~~~~~~~~~~~  180 (207)
T 1vg8_A          163 EQAFQTIARNALKQETEV  180 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccc
Confidence            999999999988765443

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=5.8e-34  Score=211.10  Aligned_cols=168  Identities=49%  Similarity=0.863  Sum_probs=153.5

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      ..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            34678999999999999999999999998877778888888888888889889999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      +|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998877666899999999999987777888999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027417          170 TVVTEIYN  177 (223)
Q Consensus       170 ~l~~~~~~  177 (223)
                      +|++.+.+
T Consensus       171 ~l~~~i~~  178 (179)
T 1z0f_A          171 EAAKKIYQ  178 (179)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            99987753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=9.8e-34  Score=210.47  Aligned_cols=169  Identities=41%  Similarity=0.732  Sum_probs=152.7

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ......++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus         7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   86 (181)
T 2efe_B            7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   86 (181)
T ss_dssp             ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred             CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence            34567799999999999999999999999888877788888888888888888999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  166 (181)
T 2efe_B           87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF  166 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            99999999999999999999999987766689999999999998777888999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027417          169 QTVVTEIYN  177 (223)
Q Consensus       169 ~~l~~~~~~  177 (223)
                      ++|++.+.+
T Consensus       167 ~~l~~~~~~  175 (181)
T 2efe_B          167 YEIARRLPR  175 (181)
T ss_dssp             HHHHHTCC-
T ss_pred             HHHHHHHHh
Confidence            999876643

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.5e-34  Score=216.26  Aligned_cols=173  Identities=49%  Similarity=0.800  Sum_probs=146.4

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ...+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            33567899999999999999999999998888777888888888888888988899999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  179 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF  179 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999877766689999999999998767788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027417          169 QTVVTEIYNILSR  181 (223)
Q Consensus       169 ~~l~~~~~~~~~~  181 (223)
                      ++|++.+.++...
T Consensus       180 ~~l~~~i~~~~~~  192 (200)
T 2o52_A          180 LKCARTILNKIDS  192 (200)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999988776543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.1e-34  Score=215.09  Aligned_cols=171  Identities=42%  Similarity=0.774  Sum_probs=147.5

Q ss_pred             cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417            8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (223)
Q Consensus         8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   87 (223)
                      .++.+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA   99 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence            34567789999999999999999999999888777788888888888888898899999999999999999999999999


Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHHH
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTA  166 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~  166 (223)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++++.++... +++++++||++|.|+++
T Consensus       100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  179 (192)
T 2il1_A          100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE  179 (192)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999999988776668999999999999877788888999998875 78999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          167 AFQTVVTEIYNI  178 (223)
Q Consensus       167 ~~~~l~~~~~~~  178 (223)
                      +|++|++.+.++
T Consensus       180 l~~~l~~~i~~~  191 (192)
T 2il1_A          180 IFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999887643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=2.4e-33  Score=206.13  Aligned_cols=165  Identities=41%  Similarity=0.700  Sum_probs=152.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      ..+.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            34679999999999999999999999988888888888888888888899999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |+|+|++++.+++.+..|+..+........|+++|+||+|+.+.+++..+++..++...+++++++||+++.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999998776668999999999999877778889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027417          171 VVTEI  175 (223)
Q Consensus       171 l~~~~  175 (223)
                      |.+.+
T Consensus       163 i~~~i  167 (170)
T 1z0j_A          163 ISRRI  167 (170)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98765

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=3.9e-34  Score=210.45  Aligned_cols=166  Identities=38%  Similarity=0.689  Sum_probs=144.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45679999999999999999999999888777788888888878888888889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999887665557999999999999877778889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027417          171 VVTEIY  176 (223)
Q Consensus       171 l~~~~~  176 (223)
                      |++.+.
T Consensus       163 l~~~~~  168 (170)
T 1z08_A          163 LCKRMI  168 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.3e-35  Score=218.92  Aligned_cols=172  Identities=44%  Similarity=0.765  Sum_probs=156.8

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ...+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus        18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (191)
T 3dz8_A           18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM   97 (191)
T ss_dssp             TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred             cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence            34567899999999999999999999998887777788888888888888888889999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  177 (191)
T 3dz8_A           98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF  177 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999988776689999999999998778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027417          169 QTVVTEIYNILS  180 (223)
Q Consensus       169 ~~l~~~~~~~~~  180 (223)
                      ++|++.+.+.+.
T Consensus       178 ~~l~~~i~~~~~  189 (191)
T 3dz8_A          178 ERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHhcc
Confidence            999998876543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.4e-33  Score=207.21  Aligned_cols=164  Identities=43%  Similarity=0.719  Sum_probs=150.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            45799999999999999999999998888777888888888888888988999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999877766689999999999998767788889999999999999999999999999999999


Q ss_pred             HHHH
Q 027417          172 VTEI  175 (223)
Q Consensus       172 ~~~~  175 (223)
                      ++.+
T Consensus       164 ~~~~  167 (170)
T 1r2q_A          164 AKKL  167 (170)
T ss_dssp             HHTS
T ss_pred             HHHH
Confidence            8654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.6e-33  Score=208.75  Aligned_cols=168  Identities=31%  Similarity=0.472  Sum_probs=151.0

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ......+||+|+|++|||||||+++|.+..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            3456689999999999999999999999888888888877666 667778889999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC-CCCCHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL-DSSNVTA  166 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~  166 (223)
                      ++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++++.++..++++++++||+ ++.|+++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~  171 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  171 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence            999999999999999999999988653 44579999999999998878899999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHH
Q 027417          167 AFQTVVTEIYN  177 (223)
Q Consensus       167 ~~~~l~~~~~~  177 (223)
                      +|++|++.+.+
T Consensus       172 l~~~l~~~i~~  182 (183)
T 3kkq_A          172 TFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999987754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-33  Score=208.74  Aligned_cols=169  Identities=46%  Similarity=0.753  Sum_probs=145.0

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   87 (223)
                      +..+..++|+|+|++|||||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            34577899999999999999999999998875 35667778888777778899899999999999999999999999999


Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      |++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||+++.|++++
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA  164 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999988776668999999999999887788889999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          168 FQTVVTEIYN  177 (223)
Q Consensus       168 ~~~l~~~~~~  177 (223)
                      |++|.+.+.+
T Consensus       165 ~~~l~~~~~~  174 (180)
T 2g6b_A          165 FTAIAKELKR  174 (180)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.8e-34  Score=213.84  Aligned_cols=170  Identities=39%  Similarity=0.667  Sum_probs=152.3

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   86 (223)
                      +.+..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus        16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (192)
T 2fg5_A           16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG   95 (192)
T ss_dssp             -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred             cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence            44556778999999999999999999999998877788888888888888888888999999999999999999999999


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||+++.|+++
T Consensus        96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  175 (192)
T 2fg5_A           96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE  175 (192)
T ss_dssp             CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence            99999999999999999999999999877666899999999999987677888999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          167 AFQTVVTEIY  176 (223)
Q Consensus       167 ~~~~l~~~~~  176 (223)
                      +|++|.+.+.
T Consensus       176 l~~~l~~~i~  185 (192)
T 2fg5_A          176 LFQGISRQIP  185 (192)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHHHH
Confidence            9999987653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=8e-34  Score=208.68  Aligned_cols=165  Identities=50%  Similarity=0.848  Sum_probs=144.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999998877778888878877888888888999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      |+|++++.+++.+..|+..+......+.|+++|+||+|+. .+.+..+++..+++..+++++++||++|.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999987766689999999999994 456778889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027417          173 TEIYNI  178 (223)
Q Consensus       173 ~~~~~~  178 (223)
                      +.+.++
T Consensus       161 ~~~~~~  166 (170)
T 1g16_A          161 KLIQEK  166 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            888654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=2.5e-33  Score=208.07  Aligned_cols=171  Identities=31%  Similarity=0.513  Sum_probs=150.6

Q ss_pred             cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417            8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (223)
Q Consensus         8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   87 (223)
                      .......++|+|+|++|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+
T Consensus         3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   81 (181)
T 2fn4_A            3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG   81 (181)
T ss_dssp             -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence            345567899999999999999999999998887777788776655 6667788889999999999999999999999999


Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHT-HSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      |++|+|||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+.+++..+++..++...+++++++||++|.|+++
T Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  161 (181)
T 2fn4_A           82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE  161 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            999999999999999999999988843 3455799999999999987778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027417          167 AFQTVVTEIYNIL  179 (223)
Q Consensus       167 ~~~~l~~~~~~~~  179 (223)
                      +|++|.+.+.+..
T Consensus       162 l~~~l~~~~~~~~  174 (181)
T 2fn4_A          162 AFEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998876543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-33  Score=206.28  Aligned_cols=163  Identities=44%  Similarity=0.750  Sum_probs=149.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      +.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            36899999999999999999999998887788888888888888889999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC---cccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA---REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      |+|++++.+++.+..|+..+......+.|+++|+||+|+.+.   +++..+++..++...+++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999988776668999999999999765   66788889999999999999999999999999999


Q ss_pred             HHHHHH
Q 027417          170 TVVTEI  175 (223)
Q Consensus       170 ~l~~~~  175 (223)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            998654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=4.1e-33  Score=209.14  Aligned_cols=172  Identities=36%  Similarity=0.672  Sum_probs=152.9

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeE-EEEEEECCE---------EEEEEEEeCCCchhhhch
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQ-TQKMDINGK---------EVKAQIWDTAGQERFRAV   79 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~G~~~~~~~   79 (223)
                      ..+..++|+|+|++|||||||+++|.+..+...+.++.+.++. ...+.+.+.         .+.+.+|||||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            4577899999999999999999999998887777888887776 556666655         789999999999999999


Q ss_pred             hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027417           80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA  158 (223)
Q Consensus        80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (223)
                      +..+++.+|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.++...+++++++||
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  166 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA  166 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999999999999999999876643 57999999999999876778889999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhh
Q 027417          159 LDSSNVTAAFQTVVTEIYNILSR  181 (223)
Q Consensus       159 ~~~~~i~~~~~~l~~~~~~~~~~  181 (223)
                      +++.|++++|++|.+.+.++..+
T Consensus       167 ~~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          167 ANGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999988766543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=4.2e-33  Score=205.87  Aligned_cols=168  Identities=30%  Similarity=0.415  Sum_probs=137.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh--hhchhHhhhcCCCE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--FRAVTSAYYRGAVG   89 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~~~~~~~~d~   89 (223)
                      ...++|+|+|++|||||||+++|.+..+...+. +.+.+.....+.+++..+.+.+|||||++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            356999999999999999999999887755433 457777777788899999999999999887  56667788899999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      +|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++++.++...+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998887652 3479999999999998877888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027417          169 QTVVTEIYNILS  180 (223)
Q Consensus       169 ~~l~~~~~~~~~  180 (223)
                      ++|++.+.++..
T Consensus       161 ~~l~~~~~~~~~  172 (175)
T 2nzj_A          161 EGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhc
Confidence            999988865443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=1.5e-33  Score=206.86  Aligned_cols=165  Identities=35%  Similarity=0.634  Sum_probs=150.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      +..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999999886654 478999999999998767788899999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027417          172 VTEIYN  177 (223)
Q Consensus       172 ~~~~~~  177 (223)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            987753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.2e-33  Score=208.77  Aligned_cols=165  Identities=31%  Similarity=0.483  Sum_probs=147.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4679999999999999999999998888888888877766 667778889999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      +|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            999999999999999999888655 3447999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027417          171 VVTEIYN  177 (223)
Q Consensus       171 l~~~~~~  177 (223)
                      |++.+.+
T Consensus       163 l~~~~~~  169 (181)
T 3t5g_A          163 IILEAEK  169 (181)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9987744

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=211.98  Aligned_cols=168  Identities=28%  Similarity=0.369  Sum_probs=142.6

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc-hhHhhhcCCC
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA-VTSAYYRGAV   88 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d   88 (223)
                      ..+..++|+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            345679999999999999999999976544333444556666677778899999999999999987664 7778889999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      ++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            99999999999999999999998876543 47999999999999877788899999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          168 FQTVVTEIYN  177 (223)
Q Consensus       168 ~~~l~~~~~~  177 (223)
                      |++|++.+.+
T Consensus       179 f~~l~~~i~~  188 (195)
T 3cbq_A          179 FEGAVRQIRL  188 (195)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=8.4e-33  Score=204.72  Aligned_cols=167  Identities=38%  Similarity=0.691  Sum_probs=146.3

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      .....++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            45678999999999999999999999988887888888888888888889988999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEEccCCCCCH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVGNKSDLKDAREVTTAEGKALAE-AQGLFFMETSALDSSNV  164 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i  164 (223)
                      +|+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999998865532    578999999999997 46678888898888 56788999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027417          165 TAAFQTVVTEIYN  177 (223)
Q Consensus       165 ~~~~~~l~~~~~~  177 (223)
                      +++|++|++.+++
T Consensus       162 ~~l~~~l~~~~~~  174 (177)
T 1wms_A          162 AAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=4.4e-33  Score=208.77  Aligned_cols=166  Identities=39%  Similarity=0.701  Sum_probs=147.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh-chhHhhhcCCCE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-AVTSAYYRGAVG   89 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~   89 (223)
                      ....+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+. .++..+++.+|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            3557999999999999999999999988888788888888888888889888999999999999988 888999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC---CCHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS---SNVT  165 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~  165 (223)
                      +|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++++.++...+++++++||+++   .|++
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence            999999999999999999999987664 557999999999999877788899999999999999999999999   9999


Q ss_pred             HHHHHHHHHHH
Q 027417          166 AAFQTVVTEIY  176 (223)
Q Consensus       166 ~~~~~l~~~~~  176 (223)
                      ++|++|++.+.
T Consensus       177 ~l~~~l~~~i~  187 (189)
T 1z06_A          177 AIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHHHHHh
Confidence            99999987764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.5e-33  Score=207.49  Aligned_cols=168  Identities=45%  Similarity=0.796  Sum_probs=151.9

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ......++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   89 (195)
T 1x3s_A           10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ   89 (195)
T ss_dssp             TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            34456799999999999999999999999888888888888888888888999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      ++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ +.+..+++..++...+++++++||+++.|++++
T Consensus        90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (195)
T 1x3s_A           90 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCA  168 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            9999999999999999999999987764 34789999999999954 567788899999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          168 FQTVVTEIYN  177 (223)
Q Consensus       168 ~~~l~~~~~~  177 (223)
                      |++|++.+.+
T Consensus       169 ~~~l~~~~~~  178 (195)
T 1x3s_A          169 FEELVEKIIQ  178 (195)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=2.9e-33  Score=207.31  Aligned_cols=165  Identities=38%  Similarity=0.709  Sum_probs=151.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999998888888888888888888888999899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  171 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  171 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999877655679999999999998777788899999999999999999999999999999999


Q ss_pred             HHHHH
Q 027417          172 VTEIY  176 (223)
Q Consensus       172 ~~~~~  176 (223)
                      .+.+.
T Consensus       172 ~~~~~  176 (179)
T 2y8e_A          172 AAALP  176 (179)
T ss_dssp             HHTCC
T ss_pred             HHHHh
Confidence            87653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=3.1e-33  Score=214.02  Aligned_cols=173  Identities=38%  Similarity=0.712  Sum_probs=151.5

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCE----------EEEEEEEeCCCchhhhc
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK----------EVKAQIWDTAGQERFRA   78 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~G~~~~~~   78 (223)
                      ...+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++.          .+.+.||||||++.+..
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   99 (217)
T 2f7s_A           20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS   99 (217)
T ss_dssp             -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence            34567899999999999999999999998887766777777777766766655          78899999999999999


Q ss_pred             hhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEc
Q 027417           79 VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (223)
                      .+..+++.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++|
T Consensus       100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  179 (217)
T 2f7s_A          100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS  179 (217)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence            999999999999999999999999999999988766543 5799999999999987777888999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhh
Q 027417          158 ALDSSNVTAAFQTVVTEIYNILSR  181 (223)
Q Consensus       158 a~~~~~i~~~~~~l~~~~~~~~~~  181 (223)
                      |+++.|++++|++|++.+.+++..
T Consensus       180 a~~g~gi~~l~~~l~~~i~~~~~~  203 (217)
T 2f7s_A          180 AATGQNVEKAVETLLDLIMKRMEQ  203 (217)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhc
Confidence            999999999999999988765543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.3e-32  Score=205.69  Aligned_cols=165  Identities=19%  Similarity=0.343  Sum_probs=142.5

Q ss_pred             cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417            8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (223)
Q Consensus         8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   87 (223)
                      .......+||+|+|++|||||||+++|+++.+...+.++ +..+ ...+.+++..+.+.+|||+|++.+.     +++.+
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~   86 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV   86 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence            345567899999999999999999999999887777776 3333 4777889999999999999988776     77889


Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHcC-CeEEEEccCCCCC
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLK--DAREVTTAEGKALAEAQG-LFFMETSALDSSN  163 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  163 (223)
                      |++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.  ..+.+..+++..++...+ ++|+++||++|.|
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            999999999999999999999999977643 479999999999994  456788999999999997 8999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEIYNIL  179 (223)
Q Consensus       164 i~~~~~~l~~~~~~~~  179 (223)
                      ++++|++|++.+.+.+
T Consensus       167 v~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          167 VERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=3.8e-33  Score=205.11  Aligned_cols=165  Identities=28%  Similarity=0.362  Sum_probs=133.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc-hhHhhhcCCCEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA-VTSAYYRGAVGALL   92 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~i~   92 (223)
                      .+||+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998777666666666777777888899999999999999988766 67778899999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999999876543 479999999999998778899999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027417          172 VTEIYNI  178 (223)
Q Consensus       172 ~~~~~~~  178 (223)
                      ++.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9877543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.5e-33  Score=210.00  Aligned_cols=165  Identities=30%  Similarity=0.467  Sum_probs=141.6

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      .....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+ ..+++.+|+
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            345679999999999999999999999988877888877665 445667888999999999999888775 678899999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc-CCCCCHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHS---DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA-LDSSNVT  165 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~  165 (223)
                      +|+|||++++.+++.+..|+..+....   ..+.|+++|+||+|+.+.+.+..+++..++...+++++++|| +++.|++
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~  174 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ  174 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence            999999999999999999999987653   247999999999999877788899999999999999999999 8999999


Q ss_pred             HHHHHHHHHHH
Q 027417          166 AAFQTVVTEIY  176 (223)
Q Consensus       166 ~~~~~l~~~~~  176 (223)
                      ++|+.|++.+.
T Consensus       175 ~lf~~l~~~i~  185 (187)
T 3c5c_A          175 HVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=6e-33  Score=208.88  Aligned_cols=168  Identities=30%  Similarity=0.526  Sum_probs=147.3

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ......+||+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            44567899999999999999999999999887777888776655 45678889999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC--cccCHHHHHHHHHHcCCe-EEEEccCCCCCH
Q 027417           89 GALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA--REVTTAEGKALAEAQGLF-FMETSALDSSNV  164 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i  164 (223)
                      ++|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.  +.+..+++..++...+++ ++++||++|.|+
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  175 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL  175 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence            99999999999999997 789888876643 6999999999999753  678889999999999998 999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027417          165 TAAFQTVVTEIYNI  178 (223)
Q Consensus       165 ~~~~~~l~~~~~~~  178 (223)
                      +++|++|++.+.+.
T Consensus       176 ~~l~~~l~~~i~~~  189 (194)
T 3reg_A          176 NEVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=212.15  Aligned_cols=166  Identities=39%  Similarity=0.688  Sum_probs=139.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            45579999999999999999999999888777778888888888888899999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC------CCcccCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK------DAREVTTAEGKALAEAQGLFFMETSALDSSNV  164 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  164 (223)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.      ..+.+..+++..++...+++++++||++|.|+
T Consensus       105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv  184 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI  184 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence            999999999999999999999887766679999999999986      34667888999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          165 TAAFQTVVTEIY  176 (223)
Q Consensus       165 ~~~~~~l~~~~~  176 (223)
                      +++|++|++.+.
T Consensus       185 ~el~~~l~~~i~  196 (199)
T 2p5s_A          185 VEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-32  Score=209.23  Aligned_cols=169  Identities=48%  Similarity=0.835  Sum_probs=150.9

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      .....++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            44567999999999999999999999988877888888888888888889888999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+. .+.+..+++..++...+++++++||+++.|++++|+
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  174 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF  174 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999887766679999999999994 466778888999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          170 TVVTEIYNIL  179 (223)
Q Consensus       170 ~l~~~~~~~~  179 (223)
                      +|.+.+.+..
T Consensus       175 ~l~~~~~~~~  184 (213)
T 3cph_A          175 TLAKLIQEKI  184 (213)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998886654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=1.6e-33  Score=208.79  Aligned_cols=167  Identities=33%  Similarity=0.525  Sum_probs=146.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-EEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      ....++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            34679999999999999999999999887666667777777777887876 67899999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHS---DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      +|+|||++++.+++.+..|+..+....   ....|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            999999999999999999998886642   12344889999999987777888999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          167 AFQTVVTEIYN  177 (223)
Q Consensus       167 ~~~~l~~~~~~  177 (223)
                      +|++|++.+.+
T Consensus       163 l~~~l~~~~~~  173 (178)
T 2hxs_A          163 CFQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999987743

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=3e-32  Score=205.95  Aligned_cols=166  Identities=39%  Similarity=0.679  Sum_probs=147.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEE----------------------------
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKE----------------------------   62 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   62 (223)
                      .+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            3457999999999999999999999998887788888888777777776654                            


Q ss_pred             ---------EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           63 ---------VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        63 ---------~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                               +.+.+|||||++.+...+..+++.+|++|+|+|++++.+++.+..|+..+.....  .|+++|+||+| ..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cc
Confidence                     8899999999999999999999999999999999999999999999999877653  99999999999 55


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 027417          134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  179 (223)
                      .+.+..++++.++...+++++++||+++.|++++|++|++.+.++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            5678889999999999999999999999999999999999887654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.8e-33  Score=213.57  Aligned_cols=176  Identities=29%  Similarity=0.457  Sum_probs=118.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCccceeEeEEEEEEECCE--EEEEEEEeCCCchhhhchhHhhhcCC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARD--EFYPNSKSTIGVEFQTQKMDINGK--EVKAQIWDTAGQERFRAVTSAYYRGA   87 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~   87 (223)
                      ...++|+|+|++|||||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+|||||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999988  676677777777777777778876  88999999999999999999999999


Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhhcCC---CCCcEEEEEeCCCCCC-CcccCHHHHHHHHHHcCCeEEEEccCC-CC
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHTHSD---MNVVTILVGNKSDLKD-AREVTTAEGKALAEAQGLFFMETSALD-SS  162 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  162 (223)
                      |++|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+ .+.+..+++..++..++++++++||++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999987765   5899999999999987 677888999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhhhhH
Q 027417          163 NVTAAFQTVVTEIYNILSRKVMISQ  187 (223)
Q Consensus       163 ~i~~~~~~l~~~~~~~~~~~~~~~~  187 (223)
                      |++++|++|++.+.+...++.....
T Consensus       178 gi~~l~~~i~~~~~~~~~~~~~~~~  202 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYEDKVAAFQ  202 (208)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999887776654443

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=5.6e-33  Score=206.30  Aligned_cols=170  Identities=33%  Similarity=0.626  Sum_probs=134.4

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      .....++|+|+|++|||||||+++|++..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            45668999999999999999999999988887788888887777777776 56688999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCC----CCCcEEEEEeCCCCCCC-cccCHHHHHHHHH-HcCCeEEEEccCCCC
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVGNKSDLKDA-REVTTAEGKALAE-AQGLFFMETSALDSS  162 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  162 (223)
                      ++|+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.+. +.+..+++..++. ..+++++++||++|.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            99999999999999999999988865432    57899999999999543 4567888888888 567889999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       163 ~i~~~~~~l~~~~~~~~  179 (223)
                      |++++|++|++.+.++.
T Consensus       164 gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          164 NVDTAFEEIARSALQQN  180 (182)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999887653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=2.1e-32  Score=200.54  Aligned_cols=163  Identities=31%  Similarity=0.411  Sum_probs=123.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+|+|++|||||||+++|.+..... ..++.+.++ ...+.+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            5899999999999999999999766543 334445444 45667889999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            9999999999999999988765 345799999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027417          173 TEIYNI  178 (223)
Q Consensus       173 ~~~~~~  178 (223)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            887654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=7.3e-33  Score=211.82  Aligned_cols=168  Identities=27%  Similarity=0.469  Sum_probs=144.9

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      .+....+||+|+|++|||||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            3445679999999999999999999999988888888877665 455667778899999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHH-HHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEE
Q 027417           89 GALLVYDISRRQTFDS-IGRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFM  154 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~  154 (223)
                      ++|+|||++++.+++. +..|+..+..... +.|+++|+||+|+.+.            +.+..+++..++...++ +|+
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL  179 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence            9999999999999999 6999999987753 7999999999999753            67889999999999999 899


Q ss_pred             EEccCCCCC-HHHHHHHHHHHHHHH
Q 027417          155 ETSALDSSN-VTAAFQTVVTEIYNI  178 (223)
Q Consensus       155 ~~Sa~~~~~-i~~~~~~l~~~~~~~  178 (223)
                      +|||++|.| ++++|+.|++.+.+.
T Consensus       180 e~SA~~g~g~v~~lf~~l~~~~~~~  204 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASMLCLNK  204 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred             EeccCCCcccHHHHHHHHHHHHhcc
Confidence            999999998 999999999887644

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=3.9e-32  Score=201.48  Aligned_cols=164  Identities=21%  Similarity=0.344  Sum_probs=138.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...+||+|+|++|||||||+++|.++.+.. +.++.+..+ ...+.+++..+.+.+|||+|++.     ..+++++|++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            456999999999999999999999988865 667766444 56677888899999999999876     45778899999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc---CCCCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH---SDMNVVTILVGNKSDLK--DAREVTTAEGKALAEAQ-GLFFMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~  165 (223)
                      +|||++++.+++.+..|+..+...   ...+.|+++|+||+|+.  ..+.+..+++..++... +++++++||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            999999999999999976655433   33579999999999994  44678889999998876 6889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 027417          166 AAFQTVVTEIYNILSRK  182 (223)
Q Consensus       166 ~~~~~l~~~~~~~~~~~  182 (223)
                      ++|++|++.+.+.....
T Consensus       158 ~lf~~l~~~~~~~~~~~  174 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQQ  174 (178)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999988765544

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.7e-33  Score=209.86  Aligned_cols=167  Identities=32%  Similarity=0.510  Sum_probs=143.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      ....+||+|+|++|||||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            35679999999999999999999999998888888877665 55556667778999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      |+|||++++.+++.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  179 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999998765 334689999999999988788899999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027417          170 TVVTEIYNI  178 (223)
Q Consensus       170 ~l~~~~~~~  178 (223)
                      +|++.+.+.
T Consensus       180 ~l~~~i~~~  188 (201)
T 3oes_A          180 KVIQEIARV  188 (201)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999887544

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=9.2e-32  Score=201.02  Aligned_cols=167  Identities=33%  Similarity=0.508  Sum_probs=144.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|.+..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4579999999999999999999999888777777754 455566778889999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      +|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+ +....+++..++...+++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999988764 345799999999999974 567788899999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027417          171 VVTEIYNILS  180 (223)
Q Consensus       171 l~~~~~~~~~  180 (223)
                      |.+.+.+...
T Consensus       160 l~~~~~~~~~  169 (189)
T 4dsu_A          160 LVREIRKHKE  169 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhh
Confidence            9988865543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=2.2e-32  Score=200.28  Aligned_cols=163  Identities=36%  Similarity=0.567  Sum_probs=142.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..++|+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            468999999999999999999999888777777766544 4456678888999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+++..++...+++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            999999999999999999887653 3479999999999998777788899999999999999999999999999999999


Q ss_pred             HHHHH
Q 027417          172 VTEIY  176 (223)
Q Consensus       172 ~~~~~  176 (223)
                      ++.+.
T Consensus       162 ~~~i~  166 (168)
T 1u8z_A          162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=3.9e-32  Score=202.62  Aligned_cols=168  Identities=36%  Similarity=0.535  Sum_probs=147.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      ....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            45579999999999999999999999888777777765544 45566788889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      |+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.+++..+++++++||+++.|++++|+
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  173 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  173 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence            99999999999999999998886653 34799999999999987777888999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          170 TVVTEIYNIL  179 (223)
Q Consensus       170 ~l~~~~~~~~  179 (223)
                      +|.+.+.++.
T Consensus       174 ~l~~~i~~~~  183 (187)
T 2a9k_A          174 DLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999886654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=3.6e-32  Score=199.21  Aligned_cols=161  Identities=32%  Similarity=0.523  Sum_probs=143.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .++|+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999888777777766554 35566777889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      ||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++... +++++++||++|.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999888654 3457999999999999877778889999999887 7899999999999999999999


Q ss_pred             HHHH
Q 027417          172 VTEI  175 (223)
Q Consensus       172 ~~~~  175 (223)
                      ++.+
T Consensus       162 ~~~i  165 (167)
T 1c1y_A          162 VRQI  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8766

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=4.5e-32  Score=205.12  Aligned_cols=170  Identities=28%  Similarity=0.478  Sum_probs=139.3

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ......++|+|+|++|||||||+++|.++.+...+.++++..+ ...+.+++..+.+.+|||||++.+..++..+++++|
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            3456689999999999999999999999887777777766444 456677888899999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEE
Q 027417           89 GALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFM  154 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~  154 (223)
                      ++|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+..            .+.+..+++..++...++ +++
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  172 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI  172 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence            999999999999999996 79998877654 799999999999875            256778889999999887 899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHHHHh
Q 027417          155 ETSALDSSNVTAAFQTVVTEIYNILS  180 (223)
Q Consensus       155 ~~Sa~~~~~i~~~~~~l~~~~~~~~~  180 (223)
                      ++||++|.|++++|++|++.+.+...
T Consensus       173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          173 ECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EEecCCCCCHHHHHHHHHHHHhcccc
Confidence            99999999999999999998876544

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=3e-32  Score=199.37  Aligned_cols=162  Identities=35%  Similarity=0.529  Sum_probs=144.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .++|+|+|++|||||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            5899999999999999999999988877777775543 466677888889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+++..++...+++++++||++|.|++++|++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence            99999999999999998886553 35799999999999987778888999999999999999999999999999999998


Q ss_pred             HHHH
Q 027417          173 TEIY  176 (223)
Q Consensus       173 ~~~~  176 (223)
                      +.+.
T Consensus       162 ~~~~  165 (167)
T 1kao_A          162 RQMN  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.4e-32  Score=206.87  Aligned_cols=168  Identities=28%  Similarity=0.375  Sum_probs=138.7

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-hhchhHhhhcCC
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-FRAVTSAYYRGA   87 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~   87 (223)
                      .....+||+|+|++|||||||+++|.+.... ....++++.++....+.+++..+.+.+|||+|.+. +..+...+++.+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            3456799999999999999999999964331 22233457677777778899999999999999876 455666778899


Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      |++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..++++.++...+++|++|||++|.|+++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999998887654 234799999999999987677888888889999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          167 AFQTVVTEIYN  177 (223)
Q Consensus       167 ~~~~l~~~~~~  177 (223)
                      +|++|++.+..
T Consensus       193 lf~~l~~~i~~  203 (211)
T 2g3y_A          193 LFEGIVRQVRL  203 (211)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987743

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-32  Score=204.70  Aligned_cols=166  Identities=34%  Similarity=0.458  Sum_probs=145.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|++|
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4569999999999999999999999988777777766554 45567788899999999999887 777888999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC-CHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS-NVTAAFQ  169 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~  169 (223)
                      +|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|. |++++|+
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence            999999999999999999888764 33579999999999998777888999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHH
Q 027417          170 TVVTEIYNIL  179 (223)
Q Consensus       170 ~l~~~~~~~~  179 (223)
                      +|++.+.+..
T Consensus       184 ~l~~~i~~~~  193 (196)
T 2atv_A          184 ELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            9998886543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.9e-32  Score=205.55  Aligned_cols=163  Identities=30%  Similarity=0.418  Sum_probs=141.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      ....++|+|+|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            34569999999999999999999999888777777766544 34556788889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      |+|||++++.+++.+..|+..+.....  .+.|+++|+||+|+.+ +.+..+++..++..++++++++||++|.|++++|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            999999999999999888877765432  3689999999999975 5677888899999999999999999999999999


Q ss_pred             HHHHHHH
Q 027417          169 QTVVTEI  175 (223)
Q Consensus       169 ~~l~~~~  175 (223)
                      ++|++.+
T Consensus       163 ~~l~~~~  169 (199)
T 2gf0_A          163 QELLTLE  169 (199)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9998655

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=2.9e-33  Score=214.29  Aligned_cols=173  Identities=25%  Similarity=0.454  Sum_probs=146.4

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~   87 (223)
                      ......+||+|+|++|||||||+++|+++.+...+.++.+.+......... +..+.+.+|||||++.+...+..++..+
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            345668999999999999999999999888877777777777666665554 3448899999999999999999999999


Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  165 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP  165 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence            99999999999999999999999998776667999999999999887788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027417          168 FQTVVTEIYNILSR  181 (223)
Q Consensus       168 ~~~l~~~~~~~~~~  181 (223)
                      |++|++.+.+....
T Consensus       166 ~~~l~~~~~~~~~~  179 (218)
T 4djt_A          166 FLHLARIFTGRPDL  179 (218)
T ss_dssp             HHHHHHHHHCCTTC
T ss_pred             HHHHHHHHhccccc
Confidence            99999887655433

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.8e-32  Score=202.41  Aligned_cols=164  Identities=27%  Similarity=0.505  Sum_probs=144.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      ....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            35679999999999999999999999888777777766554 44566777889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEE
Q 027417           91 LLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMET  156 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~  156 (223)
                      |+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.            +.+..+++..++...++ +++++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  172 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  172 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence            9999999999999997 79998877654 7999999999999763            46788899999999998 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q 027417          157 SALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      ||++|.|++++|++|++.++
T Consensus       173 Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          173 SALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.4e-32  Score=209.67  Aligned_cols=166  Identities=30%  Similarity=0.554  Sum_probs=142.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4679999999999999999999999888777777776554 445667888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--------cCHHHHHHHHHHcCC-eEEEEccCCC
Q 027417           92 LVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDARE--------VTTAEGKALAEAQGL-FFMETSALDS  161 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~  161 (223)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.+.        +..+++..++..+++ +++++||++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999996 89999877654 799999999999876543        378888999999996 8999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       162 ~~i~~~~~~l~~~~~~~~  179 (223)
                      .|++++|++|++.+.+..
T Consensus       165 ~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC-
T ss_pred             CCHHHHHHHHHHHHhhhh
Confidence            999999999998876543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=4.2e-32  Score=206.34  Aligned_cols=169  Identities=31%  Similarity=0.537  Sum_probs=143.3

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   86 (223)
                      |....+..+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.
T Consensus        21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   99 (205)
T 1gwn_A           21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD   99 (205)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence            334456789999999999999999999999988777777776655 4456677788999999999999999999999999


Q ss_pred             CCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-Ce
Q 027417           87 AVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQG-LF  152 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~  152 (223)
                      +|++|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.            +.+..+++..+++.++ ++
T Consensus       100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  178 (205)
T 1gwn_A          100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  178 (205)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence            9999999999999999999 789988876653 7999999999999742            4578888999999887 68


Q ss_pred             EEEEccC-CCCCHHHHHHHHHHHHHH
Q 027417          153 FMETSAL-DSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       153 ~~~~Sa~-~~~~i~~~~~~l~~~~~~  177 (223)
                      +++|||+ ++.|++++|+.|++.+++
T Consensus       179 ~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          179 YIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            9999999 689999999999988764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=4.9e-32  Score=202.32  Aligned_cols=164  Identities=31%  Similarity=0.542  Sum_probs=142.3

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      ....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999999888777777766555 34566788889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CeEEEE
Q 027417           91 LLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQG-LFFMET  156 (223)
Q Consensus        91 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~  156 (223)
                      |+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.            +.+..+++..+++.++ ++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 789988876643 7999999999999742            5678889999999887 689999


Q ss_pred             ccC-CCCCHHHHHHHHHHHHH
Q 027417          157 SAL-DSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       157 Sa~-~~~~i~~~~~~l~~~~~  176 (223)
                      ||+ ++.|++++|+.|++.++
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHH
T ss_pred             eecCCCcCHHHHHHHHHHHHh
Confidence            999 68999999999998775

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=2.4e-31  Score=201.35  Aligned_cols=165  Identities=29%  Similarity=0.499  Sum_probs=144.7

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      -....+||+|+|++|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   99 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence            3467899999999999999999999998887777777766654 346678888999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEE
Q 027417           90 ALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFME  155 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~  155 (223)
                      +|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.            +.+..+++..++...++ ++++
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (201)
T 2gco_A          100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE  178 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence            9999999999999999 688888876543 7999999999999764            45778889999999998 8999


Q ss_pred             EccCCCCCHHHHHHHHHHHHH
Q 027417          156 TSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       156 ~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      +||++|.|++++|++|++.++
T Consensus       179 ~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          179 CSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998775

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=4.6e-31  Score=197.74  Aligned_cols=169  Identities=33%  Similarity=0.503  Sum_probs=135.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|.+|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            4569999999999999999999999887776666655443 456677888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ +....++++++++..+++++++||+++.|++++|++
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  176 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT  176 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999998886653 34699999999999976 567788999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 027417          171 VVTEIYNILSRK  182 (223)
Q Consensus       171 l~~~~~~~~~~~  182 (223)
                      |++.+.+.+.++
T Consensus       177 l~~~~~~~~~~~  188 (190)
T 3con_A          177 LVREIRQYRMKK  188 (190)
T ss_dssp             HHHHHHHHC---
T ss_pred             HHHHHHHHHHhh
Confidence            999887655443

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.1e-31  Score=200.10  Aligned_cols=163  Identities=29%  Similarity=0.534  Sum_probs=143.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            3569999999999999999999999888777777765444 455677889999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEc
Q 027417           92 LVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETS  157 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  157 (223)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.            +.+..+++..++...++ +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999997 79888877654 7999999999998753            46778889999999997 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 027417          158 ALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       158 a~~~~~i~~~~~~l~~~~~  176 (223)
                      |++|.|++++|++|++.+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCccCHHHHHHHHHHHHh
Confidence            9999999999999998774

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=9.9e-32  Score=205.47  Aligned_cols=166  Identities=33%  Similarity=0.535  Sum_probs=124.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4579999999999999999999999888777777755433 455677888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-eEEEEc
Q 027417           92 LVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAR------------EVTTAEGKALAEAQGL-FFMETS  157 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  157 (223)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+....            .+..+++..+++..++ +++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999996 79988876653 68999999999997642            5778889999999998 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHH
Q 027417          158 ALDSSNVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       158 a~~~~~i~~~~~~l~~~~~~~~  179 (223)
                      |++|.|++++|++|++.+.+..
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999998886543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=218.28  Aligned_cols=168  Identities=48%  Similarity=0.823  Sum_probs=143.1

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ...+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d  107 (199)
T 3l0i_B           28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH  107 (199)
T ss_dssp             CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence            34567899999999999999999999998887777788888888888888999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus       108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~  187 (199)
T 3l0i_B          108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF  187 (199)
T ss_dssp             EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999988777789999999999998777777778888999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027417          169 QTVVTEIY  176 (223)
Q Consensus       169 ~~l~~~~~  176 (223)
                      ++|++.+.
T Consensus       188 ~~l~~~l~  195 (199)
T 3l0i_B          188 MTMAAEIK  195 (199)
T ss_dssp             HHHTTTTT
T ss_pred             HHHHHHHH
Confidence            99987654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=7.2e-31  Score=197.51  Aligned_cols=167  Identities=28%  Similarity=0.378  Sum_probs=137.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-hhchhHhhhcCCC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDE--FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-FRAVTSAYYRGAV   88 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d   88 (223)
                      ...+||+|+|++|||||||+++|.+..  +... .++++.++....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            456999999999999999999999633  2333 33456677677778899999999999999766 4556777888999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      ++|+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...+++|++|||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            999999999999999999998887654 3347899999999999876778888888888889999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          168 FQTVVTEIYNIL  179 (223)
Q Consensus       168 ~~~l~~~~~~~~  179 (223)
                      |++|++.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999998886544

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=2.6e-31  Score=195.47  Aligned_cols=162  Identities=30%  Similarity=0.403  Sum_probs=140.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..++|+|+|++|||||||+++|.++.+...+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            358999999999999999999999887766667766544 3445678888899999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHS--DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |||++++.+++.+..|+..+....  ..+.|+++|+||+|+...+++..+++..++...+++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            999999999999999988876542  236899999999999877778888889999999999999999999999999999


Q ss_pred             HHHHH
Q 027417          171 VVTEI  175 (223)
Q Consensus       171 l~~~~  175 (223)
                      |.+.+
T Consensus       161 l~~~~  165 (172)
T 2erx_A          161 LLNLE  165 (172)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.98  E-value=1.1e-30  Score=190.80  Aligned_cols=161  Identities=34%  Similarity=0.530  Sum_probs=141.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .++|+++|++|||||||+++|.+..+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            4799999999999999999999988777666765543 355666788889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      +|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ +....+++..+++..+++++++||+++.|++++|++|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999886653 34799999999999876 56678889999999999999999999999999999999


Q ss_pred             HHHH
Q 027417          173 TEIY  176 (223)
Q Consensus       173 ~~~~  176 (223)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T 2ce2_X          161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.98  E-value=1e-31  Score=202.11  Aligned_cols=167  Identities=19%  Similarity=0.288  Sum_probs=138.0

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------CCccceeEeEEEEE-EECCEEEEEEEEeCCCchhhh
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPN-----------SKSTIGVEFQTQKM-DINGKEVKAQIWDTAGQERFR   77 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~G~~~~~   77 (223)
                      ..+..+||+|+|++|||||||++.+.+. +...           ..++.+.++....+ .+++..+.+.+|||||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            4567899999999999999999877654 3333           23344444444334 456778899999999999999


Q ss_pred             chhHhhhcCCCEEEEEEECC------CHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 027417           78 AVTSAYYRGAVGALLVYDIS------RRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL  151 (223)
Q Consensus        78 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  151 (223)
                      ..+..+++++|++|+|||++      +..+++.+..|+..+.. ...+.|+++|+||+|+.+  .+..+++..++...++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~  165 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK  165 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence            99999999999999999999      56788888889888743 334799999999999975  3788999999999999


Q ss_pred             -eEEEEccCCCCCHHHHHHHHHHHHHHHHh
Q 027417          152 -FFMETSALDSSNVTAAFQTVVTEIYNILS  180 (223)
Q Consensus       152 -~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  180 (223)
                       +++++||++|.|++++|++|++.+.+...
T Consensus       166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          166 FPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             SCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             ceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence             89999999999999999999998877654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=1.2e-30  Score=198.36  Aligned_cols=164  Identities=30%  Similarity=0.507  Sum_probs=138.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...+||+|+|++|||||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            456899999999999999999999988877777776665543 3667888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEc
Q 027417           92 LVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETS  157 (223)
Q Consensus        92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  157 (223)
                      +|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.            +.+..+++..++...++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999999 688888876543 7999999999999754            45778888999999988 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 027417          158 ALDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       158 a~~~~~i~~~~~~l~~~~~~  177 (223)
                      |++|.|++++|++|++.+++
T Consensus       181 A~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999987753

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=6e-30  Score=193.37  Aligned_cols=169  Identities=65%  Similarity=1.044  Sum_probs=150.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            46799999999999999999999998887777888888888888889999999999999999999888999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|+|+++..+++.+..|+..+......+.|+++++||+|+.+.+.+..++++.++...++.++++||+++.|++++|+.|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988766555578999999999998767778888999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 027417          172 VTEIYNILS  180 (223)
Q Consensus       172 ~~~~~~~~~  180 (223)
                      .+.+.+...
T Consensus       163 ~~~~~~~~~  171 (199)
T 2f9l_A          163 LTEIYRIVS  171 (199)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998876553

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=8.5e-32  Score=200.16  Aligned_cols=163  Identities=30%  Similarity=0.575  Sum_probs=126.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...+||+|+|++|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            45699999999999999999999998877666666554332 22345666788889999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCcc----------cCHHHHHHHHHHcCC-eEEEEccC
Q 027417           92 LVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDARE----------VTTAEGKALAEAQGL-FFMETSAL  159 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  159 (223)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.+.          +..+++..++...++ +++++||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            999999999999997 79998877654 799999999999876544          477888999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027417          160 DSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       160 ~~~~i~~~~~~l~~~~~  176 (223)
                      +|.|++++|++|++.++
T Consensus       164 ~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCTTHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999987663

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=2.9e-31  Score=200.09  Aligned_cols=169  Identities=17%  Similarity=0.262  Sum_probs=129.3

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhc
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYR   85 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~   85 (223)
                      +..+....++|+|+|++|||||||+++|++..+.. .+.++.+.....  +.  ...+.+.+|||||++.+..++..+++
T Consensus        10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~   85 (199)
T 4bas_A           10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--FE--KGRVAFTVFDMGGAKKFRGLWETYYD   85 (199)
T ss_dssp             ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--EE--ETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred             cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHh
Confidence            44566778999999999999999999999998877 677887754433  22  34478899999999999999999999


Q ss_pred             CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCC--------CCCcEEEEEeCCCCCCCcc---cCHHHHHHH-HHHcCCeE
Q 027417           86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSD--------MNVVTILVGNKSDLKDARE---VTTAEGKAL-AEAQGLFF  153 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~-~~~~~~~~  153 (223)
                      .+|++|+|||++++.+|+.+..|+..+.....        .+.|+++|+||+|+.+...   +........ +...++++
T Consensus        86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (199)
T 4bas_A           86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVI  165 (199)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEE
T ss_pred             cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEE
Confidence            99999999999999999999999888755411        2689999999999986522   111111111 14467789


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHHHH
Q 027417          154 METSALDSSNVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       154 ~~~Sa~~~~~i~~~~~~l~~~~~~~~  179 (223)
                      +++||++|.|++++|++|++.+.+..
T Consensus       166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          166 FASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             EEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            99999999999999999998886553

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=7.5e-31  Score=199.16  Aligned_cols=163  Identities=28%  Similarity=0.515  Sum_probs=139.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      ....+||+|+|++|||||||+++|+++.+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            35679999999999999999999999888777777754 44455666788889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-eEEEE
Q 027417           91 LLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAR------------EVTTAEGKALAEAQGL-FFMET  156 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~  156 (223)
                      |+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+..+++..+++..++ +++++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999996 8998887765 479999999999987643            2778889999999987 49999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 027417          157 SALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ||++|.|++++|++|++.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=1.9e-31  Score=204.70  Aligned_cols=168  Identities=29%  Similarity=0.520  Sum_probs=147.6

Q ss_pred             cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417            8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (223)
Q Consensus         8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   87 (223)
                      .......+||+|+|.+|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+|||||++.+..++..+++.+
T Consensus         9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (221)
T 3gj0_A            9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA   88 (221)
T ss_dssp             TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence            34456779999999999999999999887777777778888888888888999999999999999999999999999999


Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      |++|+|||++++.+++.+..|+..+..... +.|+++|+||+|+.+...  ..+...++...+++++++||++|.|++++
T Consensus        89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  165 (221)
T 3gj0_A           89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP  165 (221)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999999999987654 799999999999975432  22556678888999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          168 FQTVVTEIYNI  178 (223)
Q Consensus       168 ~~~l~~~~~~~  178 (223)
                      |++|.+.+.+.
T Consensus       166 ~~~l~~~l~~~  176 (221)
T 3gj0_A          166 FLWLARKLIGD  176 (221)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999887544

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=3.6e-29  Score=188.02  Aligned_cols=166  Identities=67%  Similarity=1.046  Sum_probs=150.1

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      ..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+++
T Consensus        25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~  104 (191)
T 1oix_A           25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG  104 (191)
T ss_dssp             CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence            44677999999999999999999999998888888888988888889999999999999999999988888999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      +++|+|+++..+++.+..|+..+........|+++++||+|+.+.+....++++.++...++.++++||+++.|++++|+
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~  184 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ  184 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999887665555789999999999987667788899999999999999999999999999999


Q ss_pred             HHHHHH
Q 027417          170 TVVTEI  175 (223)
Q Consensus       170 ~l~~~~  175 (223)
                      .|.+.+
T Consensus       185 ~l~~~i  190 (191)
T 1oix_A          185 TILTEI  190 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1.9e-30  Score=194.32  Aligned_cols=161  Identities=20%  Similarity=0.343  Sum_probs=129.1

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      .....++|+|+|++|||||||+++|.+..+...+.++.+.++..  +..  ..+.+.+|||||++.+...+..+++++|+
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSA   93 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe--CCEEEEEEECCCCHhHHHHHHHHHccCCE
Confidence            34567999999999999999999999988877777777766543  233  34778899999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCCC
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSN  163 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~  163 (223)
                      +|+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+....  ..++.....     ...+++++++||++|.|
T Consensus        94 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  171 (188)
T 1zd9_A           94 IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDN  171 (188)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCC
Confidence            99999999999999999998887654 22479999999999997532  222222211     12345799999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEIY  176 (223)
Q Consensus       164 i~~~~~~l~~~~~  176 (223)
                      ++++|++|++.+.
T Consensus       172 v~~l~~~l~~~~~  184 (188)
T 1zd9_A          172 IDITLQWLIQHSK  184 (188)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.3e-29  Score=188.67  Aligned_cols=161  Identities=21%  Similarity=0.329  Sum_probs=129.0

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDE-FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      .....++|+|+|++|||||||+++|.+.. +...+.++.+.  ....+.+++  +.+.+|||||++.+...+..+++++|
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d   92 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ   92 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence            34567999999999999999999999877 45555666653  344444554  68889999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcCC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCC
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHSD---MNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALD  160 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~  160 (223)
                      ++|+|+|++++.+++.+..|+..+.....   .+.|+++|+||+|+.+  ....++...+..     ..+++++++||++
T Consensus        93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  170 (190)
T 2h57_A           93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIK  170 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence            99999999999999999999988866533   4799999999999975  344556555543     2356899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEIY  176 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~~  176 (223)
                      |.|++++|++|.+.+.
T Consensus       171 ~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          171 GEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             TBTHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999987663

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=8e-30  Score=187.51  Aligned_cols=158  Identities=20%  Similarity=0.321  Sum_probs=125.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|.++.+. .+.++.+...  ..+.++  .+.+.+|||||++.+...+..+++.+|++|
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            45699999999999999999999988764 3556655443  344444  467889999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHH-----HHHHcCCeEEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKA-----LAEAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~  165 (223)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...  .++...     .+...+++++++||++|.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            9999999999999998888775542 24799999999999976422  222222     122346689999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          166 AAFQTVVTEIY  176 (223)
Q Consensus       166 ~~~~~l~~~~~  176 (223)
                      ++|++|++.+.
T Consensus       158 ~l~~~l~~~i~  168 (171)
T 1upt_A          158 EAMEWLVETLK  168 (171)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=2.1e-30  Score=189.47  Aligned_cols=156  Identities=21%  Similarity=0.397  Sum_probs=121.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+|+|++|||||||+++|.++.+.. +.+|.+..  ...+..  ..+.+.+|||||++.+...+..+++++|++|+|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877653 45665533  233333  3478889999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCeEEEEccCCCCCHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKAL-----AEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      |++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..++....     +...+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999999998887553 23468999999999997532  22222221     11234579999999999999999


Q ss_pred             HHHHHHHHH
Q 027417          169 QTVVTEIYN  177 (223)
Q Consensus       169 ~~l~~~~~~  177 (223)
                      ++|++.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999887643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=5.3e-29  Score=185.91  Aligned_cols=159  Identities=21%  Similarity=0.376  Sum_probs=128.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|.++. ...+.++.+...  ..+.+++  +.+.+|||||++.+...+..+++.+|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            567999999999999999999999887 566667766443  3444444  67889999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  165 (223)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..++..+...     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            999999999999999998887654 23479999999999997642  3333333221     345679999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          166 AAFQTVVTEIYN  177 (223)
Q Consensus       166 ~~~~~l~~~~~~  177 (223)
                      ++|++|.+.+.+
T Consensus       169 ~l~~~l~~~i~~  180 (186)
T 1ksh_A          169 PGIDWLLDDISS  180 (186)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999887643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=5.1e-29  Score=187.00  Aligned_cols=155  Identities=21%  Similarity=0.278  Sum_probs=126.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+++|++|||||||+++|.++.+. .+.++.+.+  ...+.+++  +.+.+|||||++.+...+..+++.+|++|
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            45689999999999999999999988764 455565553  44555666  78899999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------cCCeEEEEcc
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA------------QGLFFMETSA  158 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  158 (223)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+  .+..+++.+....            .+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            999999999999999999887654 234799999999999975  4566666665432            3467999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 027417          159 LDSSNVTAAFQTVVT  173 (223)
Q Consensus       159 ~~~~~i~~~~~~l~~  173 (223)
                      ++|.|++++|++|++
T Consensus       174 ~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             TTTBSHHHHHHHHHT
T ss_pred             CcCCCHHHHHHHHHh
Confidence            999999999999875

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=1.9e-29  Score=190.52  Aligned_cols=156  Identities=20%  Similarity=0.256  Sum_probs=122.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+++|++|||||||+++|.++.+. .+.++.+.+.  ..+.+++  +.+.+|||||++.+...+..+++.+|++|
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            45689999999999999999999987764 4455655543  3455565  78899999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----------------cCCeE
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-----------------QGLFF  153 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  153 (223)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+  .+..+++.+++..                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            999999999999999999887654 234799999999999975  4667777776552                 34579


Q ss_pred             EEEccCCCCCHHHHHHHHHHH
Q 027417          154 METSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       154 ~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      ++|||++|.|++++|++|++.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999998753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=1.8e-29  Score=187.93  Aligned_cols=159  Identities=22%  Similarity=0.369  Sum_probs=124.4

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      ......++|+|+|++|||||||+++|.+..+ ..+.++.+....  .+.+++  +.+.+|||||++.+...+..+++.+|
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTE   90 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence            3445679999999999999999999998877 444555554443  344454  78889999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCC
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSS  162 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~  162 (223)
                      ++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.
T Consensus        91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  168 (181)
T 2h17_A           91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGE  168 (181)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence            9999999999999999999988876542 347999999999999753  3344444332     2235579999999999


Q ss_pred             CHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTE  174 (223)
Q Consensus       163 ~i~~~~~~l~~~  174 (223)
                      |++++|++|++.
T Consensus       169 gi~~l~~~l~~~  180 (181)
T 2h17_A          169 GLCQGLEWMMSR  180 (181)
T ss_dssp             THHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=6.1e-29  Score=185.88  Aligned_cols=157  Identities=22%  Similarity=0.386  Sum_probs=123.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|.++.+. .+.++.+.+.  ..+.+++  +.+.+|||||++.+...+..+++.+|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999987765 4556655443  3334454  78889999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  165 (223)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++......     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999998886642 247999999999999753  33444444332     345689999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          166 AAFQTVVTEI  175 (223)
Q Consensus       166 ~~~~~l~~~~  175 (223)
                      ++|++|++.+
T Consensus       167 ~l~~~l~~~~  176 (187)
T 1zj6_A          167 QGLEWMMSRL  176 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998766

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=4.8e-30  Score=192.92  Aligned_cols=158  Identities=18%  Similarity=0.365  Sum_probs=119.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|.++.+. .+.+|.+.  ....+...+  +.+.+|||||++.+...+..+++.+|++|
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE--EEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce--eEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            45699999999999999999999987764 34455553  233344443  78889999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCeEEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKAL-----AEAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  165 (223)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..++....     +...+++++++||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            999999999999999998887543 23469999999999997542  22222221     11234579999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          166 AAFQTVVTEIY  176 (223)
Q Consensus       166 ~~~~~l~~~~~  176 (223)
                      ++|++|++.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999987663

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=2.9e-28  Score=197.54  Aligned_cols=163  Identities=29%  Similarity=0.522  Sum_probs=143.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+++|.+|||||||++++.++.+...+.++++..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            4569999999999999999999999888777777765444 455677888999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEc
Q 027417           92 LVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETS  157 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  157 (223)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+...            +.+..+++..++...++ +++++|
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  310 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  310 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence            999999999999987 78888877654 7999999999998653            56788899999999997 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 027417          158 ALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       158 a~~~~~i~~~~~~l~~~~~  176 (223)
                      |++|.|++++|+.|++.++
T Consensus       311 a~~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          311 ALTQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHh
Confidence            9999999999999998765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=5.4e-30  Score=191.32  Aligned_cols=162  Identities=22%  Similarity=0.441  Sum_probs=122.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCccceeEeEEEEEEE---CCEEEEEEEEeCCCchhhhchhHhhhcCCC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD--EFYPNSKSTIGVEFQTQKMDI---NGKEVKAQIWDTAGQERFRAVTSAYYRGAV   88 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   88 (223)
                      .+||+|+|++|||||||+++|.+.  .+...+.++.+.++....+.+   ++..+.+.+|||+|++.+..++..++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  344456677777766555443   235678999999999999999999999999


Q ss_pred             EEEEEEECCCH-hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHcCCe----EEEEccCC
Q 027417           89 GALLVYDISRR-QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT---TAEGKALAEAQGLF----FMETSALD  160 (223)
Q Consensus        89 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~  160 (223)
                      ++++|||++++ .+++.+..|+..+..... +.|+++|+||+|+.+.+.+.   .+.+..+++..+++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999997 589999999998876543 68999999999997644332   33455666667776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHH
Q 027417          161 SS-NVTAAFQTVVTEIY  176 (223)
Q Consensus       161 ~~-~i~~~~~~l~~~~~  176 (223)
                      +. +++++++.|.+.+.
T Consensus       161 ~~~~~~~l~~~i~~~~~  177 (184)
T 2zej_A          161 ESDALAKLRKTIINESL  177 (184)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHh
Confidence            96 99999998887664

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=8.8e-29  Score=184.29  Aligned_cols=159  Identities=23%  Similarity=0.350  Sum_probs=124.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+++|++|||||||+++|.+..+ ..+.++.|.+  ...+.++  .+.+.+|||||++.+...+..+++.+|++|
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            5679999999999999999999998754 3345555643  3344445  367889999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  165 (223)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+...  .++.....     ...+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999999998877543 234789999999999976432  23332221     1234579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          166 AAFQTVVTEIYN  177 (223)
Q Consensus       166 ~~~~~l~~~~~~  177 (223)
                      ++|++|++.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999877644

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=1.8e-31  Score=202.34  Aligned_cols=162  Identities=29%  Similarity=0.538  Sum_probs=137.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            5679999999999999999999998887766666654433 444556777788999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcCC-eEEEEc
Q 027417           92 LVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAR------------EVTTAEGKALAEAQGL-FFMETS  157 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  157 (223)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+..            .+..+++..+++..++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999986 78888776544 79999999999997542            4566778888888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 027417          158 ALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       158 a~~~~~i~~~~~~l~~~~  175 (223)
                      |++|.|++++|++|++.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=3.1e-29  Score=188.99  Aligned_cols=164  Identities=24%  Similarity=0.264  Sum_probs=123.3

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEE--EEEEEC-CEEEEEEEEeCCCchhhhchh---
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQT--QKMDIN-GKEVKAQIWDTAGQERFRAVT---   80 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~D~~G~~~~~~~~---   80 (223)
                      +..+....+||+|+|++|||||||++++.+... ..  ++.+.+...  ....+. +..+.+.+|||+|++.+....   
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   89 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY   89 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence            445567789999999999999999998887432 22  333333322  222232 566789999999999987776   


Q ss_pred             HhhhcCCCEEEEEEECCCH--hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-------CcccCHHHHHHHHH----
Q 027417           81 SAYYRGAVGALLVYDISRR--QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD-------AREVTTAEGKALAE----  147 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~~~~----  147 (223)
                      ..+++++|++|+|||++++  ++++.+..|+..+.... .+.|+++|+||+|+..       .+.+..+++..++.    
T Consensus        90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~  168 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE  168 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence            8999999999999999997  67777778887775433 3799999999999865       24455666777887    


Q ss_pred             HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          148 AQGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       148 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ..+++|+++||++ .|++++|+.|++.+
T Consensus       169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            6788999999999 99999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=1.5e-29  Score=189.40  Aligned_cols=159  Identities=19%  Similarity=0.332  Sum_probs=125.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      +..++|+|+|++|||||||+++|.++.+.. +.++.+...  ..+.++  .+.+.+|||||++.+...+..+++.+|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999998876643 455655433  334444  367889999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCeEEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKAL-----AEAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  165 (223)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+...  .++....     +...+++++++||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            999999999999999888877554 334799999999999975422  2222221     12335579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          166 AAFQTVVTEIYN  177 (223)
Q Consensus       166 ~~~~~l~~~~~~  177 (223)
                      ++|++|.+.+.+
T Consensus       173 ~l~~~l~~~i~~  184 (189)
T 2x77_A          173 EGMDWLVERLRE  184 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987743

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=9.3e-29  Score=183.91  Aligned_cols=159  Identities=19%  Similarity=0.368  Sum_probs=124.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...++|+|+|++|||||||+++|.++.+ ..+.++.+...  ..+.+++  +.+.+|||||++.+...+..+++.+|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4679999999999999999999998776 44556656433  3344444  78889999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  165 (223)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+...     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999988886553 457999999999999753  33444443322     124579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          166 AAFQTVVTEIYN  177 (223)
Q Consensus       166 ~~~~~l~~~~~~  177 (223)
                      ++|++|.+.+.+
T Consensus       169 ~l~~~l~~~~~~  180 (183)
T 1moz_A          169 EGLDWLIDVIKE  180 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=1.4e-27  Score=175.11  Aligned_cols=153  Identities=18%  Similarity=0.230  Sum_probs=115.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh------chhHhhhc--
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR------AVTSAYYR--   85 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~--   85 (223)
                      .++|+|+|++|||||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||+..+.      .+...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            48999999999999999999998766555455545555555555555  578899999987664      33455554  


Q ss_pred             CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417           86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  165 (223)
                      .+|++++|+|+++.+.   ...|+..+...   +.|+++|+||+|+...+.+.. ++..++..++++++++||++|.|++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            8999999999998543   44577666542   689999999999865444432 4677888889999999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          166 AAFQTVVTEI  175 (223)
Q Consensus       166 ~~~~~l~~~~  175 (223)
                      ++|++|.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=7.1e-27  Score=180.13  Aligned_cols=168  Identities=20%  Similarity=0.109  Sum_probs=120.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch------hh---hchhHh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE------RF---RAVTSA   82 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~---~~~~~~   82 (223)
                      ...++|+|+|++|||||||+++|++..+.....+..+.+.........+  +.+.+|||||..      ..   ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4579999999999999999999998876432222222333333333343  678899999973      21   112334


Q ss_pred             hhcCCCEEEEEEECCCHhhHHH--HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHcC--CeEEE
Q 027417           83 YYRGAVGALLVYDISRRQTFDS--IGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTA---EGKALAEAQG--LFFME  155 (223)
Q Consensus        83 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~  155 (223)
                      ++..+|++|+|+|++++.+++.  ...|+..+.... .+.|+++|+||+|+.+.+.+..+   ....++...+  +++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            5688999999999999887652  345666665442 26899999999999876666554   4566777777  88999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHHHHhhh
Q 027417          156 TSALDSSNVTAAFQTVVTEIYNILSRK  182 (223)
Q Consensus       156 ~Sa~~~~~i~~~~~~l~~~~~~~~~~~  182 (223)
                      +||++|.|++++|++|++.+.+.....
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~~~~~  210 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKNDQAES  210 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887765543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=6.8e-28  Score=183.87  Aligned_cols=161  Identities=16%  Similarity=0.181  Sum_probs=113.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCE-EEEEEEEeCCCchhhhc-hhHhhhcCCC
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK-EVKAQIWDTAGQERFRA-VTSAYYRGAV   88 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~-~~~~~~~~~d   88 (223)
                      ....++|+|+|++|||||||+++|+++.+...+.++ +.+...  +.+++. .+.+.+|||||++.+.. ++..+++.+|
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            456799999999999999999999998876655433 443333  455543 57899999999999887 7888899999


Q ss_pred             EEEEEEECCCHh-hHHHHHH-HHHHHhh--cCCCCCcEEEEEeCCCCCCCcccC--HHHHHH------------------
Q 027417           89 GALLVYDISRRQ-TFDSIGR-WLNELHT--HSDMNVVTILVGNKSDLKDAREVT--TAEGKA------------------  144 (223)
Q Consensus        89 ~~i~v~d~~~~~-s~~~~~~-~~~~i~~--~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~------------------  144 (223)
                      ++|+|||+++.. ++..+.. |...+..  ....+.|+++|+||+|+.+.....  .+....                  
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence            999999999954 4555544 4444433  234468999999999997643211  011111                  


Q ss_pred             --------------HHH-Hc--CCeEEEEccCCC------CCHHHHHHHHHHH
Q 027417          145 --------------LAE-AQ--GLFFMETSALDS------SNVTAAFQTVVTE  174 (223)
Q Consensus       145 --------------~~~-~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~  174 (223)
                                    ++. .+  +++|++|||++|      .|++++|++|.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                          111 11  567999999999      9999999999864

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=7.6e-29  Score=194.35  Aligned_cols=165  Identities=27%  Similarity=0.339  Sum_probs=121.6

Q ss_pred             ccCCeeeEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCccc-eeEeEEE--------------EEEECCE
Q 027417            9 RAEDYLFKVVLIGDS---------AVGKSNLLARFAR---DEFYPNSKSTI-GVEFQTQ--------------KMDINGK   61 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~---------~sGKStli~~l~~---~~~~~~~~~~~-~~~~~~~--------------~~~~~~~   61 (223)
                      ......+||+|+|.+         |||||||+++|++   ..+...+.+++ +.++...              ...+++.
T Consensus        14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   93 (255)
T 3c5h_A           14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV   93 (255)
T ss_dssp             SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred             CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence            335667999999999         9999999999998   45555555553 2222111              1124567


Q ss_pred             EEEEEEEe-----------------------CCCchhhhchhHhhhc---------------------CCCEEEEEEECC
Q 027417           62 EVKAQIWD-----------------------TAGQERFRAVTSAYYR---------------------GAVGALLVYDIS   97 (223)
Q Consensus        62 ~~~~~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~   97 (223)
                      .+.+.|||                       ++|++.+..++..+++                     ++|++|+|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            78899999                       5556666666666666                     799999999999


Q ss_pred             CH--hhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCeEEEEccCCCCCHHHHHHHHHH
Q 027417           98 RR--QTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-QGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus        98 ~~--~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      ++  .+|+.+..|+..+... ...+.|+++|+||+|+.+.+.+  +++..++.. .+++++++||++|.|++++|++|++
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~  251 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ  251 (255)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            98  9999999999988654 3347999999999999764444  567777776 4889999999999999999999987


Q ss_pred             HH
Q 027417          174 EI  175 (223)
Q Consensus       174 ~~  175 (223)
                      .+
T Consensus       252 ~l  253 (255)
T 3c5h_A          252 LI  253 (255)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=9.4e-27  Score=172.20  Aligned_cols=155  Identities=21%  Similarity=0.208  Sum_probs=118.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .+..++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++.  .+.+|||||++.+...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            456799999999999999999999998887766666555555555666664  567999999999999988899999999


Q ss_pred             EEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-------C--CeEEEEcc
Q 027417           91 LLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-------G--LFFMETSA  158 (223)
Q Consensus        91 i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa  158 (223)
                      |+|+|+++   ..+++.+    ..+.   ..+.|+++|+||+|+.+.   ..++........       +  ++++++||
T Consensus        83 i~v~d~~~~~~~~~~~~l----~~~~---~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (178)
T 2lkc_A           83 ILVVAADDGVMPQTVEAI----NHAK---AANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSA  152 (178)
T ss_dssp             EEEEETTCCCCHHHHHHH----HHHG---GGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred             EEEEECCCCCcHHHHHHH----HHHH---hCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence            99999998   4444332    2222   236899999999999753   223333222222       2  57999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 027417          159 LDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       159 ~~~~~i~~~~~~l~~~~~~  177 (223)
                      ++|.|++++|++|++.+..
T Consensus       153 ~~~~gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          153 KTKEGLDHLLEMILLVSEM  171 (178)
T ss_dssp             SSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhhh
Confidence            9999999999999876643

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=6.9e-27  Score=187.83  Aligned_cols=162  Identities=20%  Similarity=0.287  Sum_probs=127.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh-----hchhHhhh
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFY---PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF-----RAVTSAYY   84 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-----~~~~~~~~   84 (223)
                      ..+||+|+|++|||||||+++|+++...   ..+.+|.+....  .+.+.+ .+.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999886322   133445444443  344444 578999999999888     67888899


Q ss_pred             cCCCEEEEEEECCCHhhHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCC--Ccc----cCHHHHHHHHHHcC---CeE
Q 027417           85 RGAVGALLVYDISRRQTFDSIGRWLNELHTH--SDMNVVTILVGNKSDLKD--ARE----VTTAEGKALAEAQG---LFF  153 (223)
Q Consensus        85 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~  153 (223)
                      +++|++|+|||++++.+++.+..|...+...  ...+.|+++|+||+|+.+  .+.    +..+++.+++..++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            9999999999999999999997775554332  133699999999999986  343    55678888999987   689


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHHH
Q 027417          154 METSALDSSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       154 ~~~Sa~~~~~i~~~~~~l~~~~~~~  178 (223)
                      +++||++ .++.++|..+++.+...
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li~~  182 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLIPN  182 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred             EEeeecC-ChHHHHHHHHHHHHcCC
Confidence            9999999 89999999988766443

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.7e-27  Score=193.11  Aligned_cols=157  Identities=19%  Similarity=0.370  Sum_probs=117.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..++|+|+|++|||||||+++|.+..+... .+|.+....  .+...  .+.+.||||||++.+..++..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            457999999999999999999998776433 345444433  33333  4778999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCCCHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      |||++++.+|+.+..|+..+... ...++|+++|+||+|+.+...  .++.....     ...+++++++||++|.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            99999999999998877776443 334799999999999986432  23322221     12345799999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          167 AFQTVVTEIY  176 (223)
Q Consensus       167 ~~~~l~~~~~  176 (223)
                      +|++|++.+.
T Consensus       317 l~~~l~~~l~  326 (329)
T 3o47_A          317 GLDWLSNQLR  326 (329)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=4e-27  Score=175.96  Aligned_cols=158  Identities=20%  Similarity=0.251  Sum_probs=118.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC-----------chhhhchhHhh
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG-----------QERFRAVTSAY   83 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~~~~~   83 (223)
                      ++|+|+|++|||||||+++|.+..+...+.++.+...  ..+.+.    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999887666555443332  333333    578999999           56677777777


Q ss_pred             hcC-CCEEEEEEECCCHhhHHHH-HHHHHH--------H-hhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe
Q 027417           84 YRG-AVGALLVYDISRRQTFDSI-GRWLNE--------L-HTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF  152 (223)
Q Consensus        84 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------i-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  152 (223)
                      ++. ++++++++++.+..+++.+ ..|...        + ......+.|+++|+||+|+...+   .+++..++..++++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            776 7777777777777788776 566542        1 22223469999999999997644   56777888888874


Q ss_pred             -------EEEEccCCCCCHHHHHHHHHHHHHHHHhh
Q 027417          153 -------FMETSALDSSNVTAAFQTVVTEIYNILSR  181 (223)
Q Consensus       153 -------~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  181 (223)
                             ++++||++|.|++++|++|++.+.+...+
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  188 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR  188 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence                   79999999999999999999888665443

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.94  E-value=5.4e-27  Score=196.97  Aligned_cols=205  Identities=18%  Similarity=0.166  Sum_probs=148.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCc----------hhhhchh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ----------ERFRAVT   80 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~   80 (223)
                      +..++|+|+|.+|||||||+++|++.... ....++++.+.....+..++.  .+.||||||+          +.+....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            45699999999999999999999987653 233333344444445556664  4779999997          4454444


Q ss_pred             H-hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHH----HcCCeEE
Q 027417           81 S-AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK-ALAE----AQGLFFM  154 (223)
Q Consensus        81 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~  154 (223)
                      . .+++.+|++|+|+|++++.+++.. .|+..+..   .++|+++|+||+|+.+.+....++.. .+..    ..+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            3 477889999999999998887775 46666554   36899999999999875554433332 2222    2367899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHHHHhh------hhhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417          155 ETSALDSSNVTAAFQTVVTEIYNILSR------KVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS  222 (223)
Q Consensus       155 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  222 (223)
                      ++||++|.|++++|+.+.+.+.+...+      +..........+.|..++++.+++|.-|-...||.+..+||
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~~i~y~~q~~~~pp~~~~~~n  400 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVN  400 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTTTEEEEEES
T ss_pred             EEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCccCCcceeEEeEecCCCCCCEEEEEeC
Confidence            999999999999999999877654321      12344455566788889999999999999999999988887

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=2.7e-26  Score=172.32  Aligned_cols=156  Identities=17%  Similarity=0.203  Sum_probs=109.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC----------chhhhchh
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----------QERFRAVT   80 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~   80 (223)
                      ....++|+|+|++|||||||+++|++..+.....++.+.+........++   .+.+|||||          .+.+...+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            45679999999999999999999998875555555555555444444444   578999999          66777777


Q ss_pred             HhhhcCC---CEEEEEEECCCHhhHHHHH--HHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--HHHHH-HHHHcCCe
Q 027417           81 SAYYRGA---VGALLVYDISRRQTFDSIG--RWLNELHTHSDMNVVTILVGNKSDLKDAREVTT--AEGKA-LAEAQGLF  152 (223)
Q Consensus        81 ~~~~~~~---d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~  152 (223)
                      ..+++.+   |++++|+|++++.++....  .|+..      .+.|+++|+||+|+.+.+++..  ++..+ +....+++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence            7887766   9999999999987766543  33322      3689999999999986544322  22222 32234678


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHH
Q 027417          153 FMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       153 ~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ++++||+++.|++++|++|.+.+
T Consensus       171 ~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          171 LILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEccCCCCHHHHHHHHHHHh
Confidence            99999999999999999998765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=2.5e-26  Score=171.54  Aligned_cols=155  Identities=18%  Similarity=0.240  Sum_probs=121.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh------chhHhhhc-
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR------AVTSAYYR-   85 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~-   85 (223)
                      ..++|+|+|++|||||||+++|.+..+.....++.+.+.....+..++  ..+.+|||||+..+.      .++..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            568999999999999999999998765544455555556666666665  678899999987764      34555554 


Q ss_pred             -CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 027417           86 -GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNV  164 (223)
Q Consensus        86 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  164 (223)
                       .+|++++|+|.++   ++....|+..+..   .+.|+++|+||+|+...+.+. ++...+++..+++++++||+++.|+
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence             5999999999875   5566677777654   368999999999987544443 3567788888999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          165 TAAFQTVVTEIY  176 (223)
Q Consensus       165 ~~~~~~l~~~~~  176 (223)
                      +++|++|++.+.
T Consensus       157 ~~l~~~i~~~~~  168 (188)
T 2wjg_A          157 EELKKAISIAVK  168 (188)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999987663

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=2.5e-27  Score=189.45  Aligned_cols=158  Identities=17%  Similarity=0.209  Sum_probs=121.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC---CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc---hhHhhhcCCCE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYP---NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA---VTSAYYRGAVG   89 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~   89 (223)
                      ||+++|+.|||||||++++.+...+.   ...+|.|.++..    ++ ..+.+++|||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654322   245677766643    22 347899999999999964   46889999999


Q ss_pred             EEEEEECCCH--hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC-------cccCHHHHHHHHHH----cCCeEEEE
Q 027417           90 ALLVYDISRR--QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA-------REVTTAEGKALAEA----QGLFFMET  156 (223)
Q Consensus        90 ~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~  156 (223)
                      +|+|||++++  +.++.+..|+..+..... +.|+++++||+|+...       +++..++++++++.    .+++||++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~-~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVNP-SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHCT-TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcCC-CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999998  333444444555544433 7999999999999764       34667777888875    67899999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHh
Q 027417          157 SALDSSNVTAAFQTVVTEIYNILS  180 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~~~~~~~~  180 (223)
                      ||++ .+|.++|..+++.++.+..
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~~  177 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPELS  177 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhHH
Confidence            9998 5899999999987765443

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.93  E-value=5.8e-26  Score=165.15  Aligned_cols=148  Identities=18%  Similarity=0.200  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYRG   86 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~   86 (223)
                      +||+++|++|||||||+++|.+..+. ....++.+.+.....+..++.  .+.+|||||...       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999987643 222333344445555556654  678999999876       34456677899


Q ss_pred             CCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCC
Q 027417           87 AVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSN  163 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  163 (223)
                      +|++|+|+|++++.+..  .+..|+..      .+.|+++|+||+|+.+..    +++.+++ ..++ +++++||++|.|
T Consensus        80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQADYEVAEYLRR------KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG  148 (161)
T ss_dssp             CSEEEEEEESSSCCCHHHHHHHHHHHH------HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred             CCEEEEEEECCCcccHhHHHHHHHHHh------cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence            99999999999864432  22233222      268999999999987542    3334444 5677 799999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEI  175 (223)
Q Consensus       164 i~~~~~~l~~~~  175 (223)
                      ++++|++|++.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999998653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.93  E-value=3.3e-26  Score=193.21  Aligned_cols=206  Identities=18%  Similarity=0.157  Sum_probs=151.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCccceeEeEEEEEEECCEEEEEEEEeCCC----------chhhhch
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----------QERFRAV   79 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~   79 (223)
                      ....++|+++|.+|+|||||+++|++... .....++++.+.....+..++.  .++||||||          ++.+...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            35579999999999999999999997643 2233333344443445555664  678999999          5666665


Q ss_pred             hHh-hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCeE
Q 027417           80 TSA-YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-----GLFF  153 (223)
Q Consensus        80 ~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~  153 (223)
                      ... +++.+|++|+|+|+++..+ +....|...+..   .++|+|+|+||+|+.+.+....++..+.+...     ++++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence            553 7789999999999998543 222445555544   36899999999999876666667766666554     5789


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHHHHhhh------hhhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417          154 METSALDSSNVTAAFQTVVTEIYNILSRK------VMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS  222 (223)
Q Consensus       154 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  222 (223)
                      +++||++|.|++++|+.+.+.+.+...+.      ..........+.|..++++.+++|.-|-...||.+..+||
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~ki~y~~q~~~~pp~~~~~~n  420 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVN  420 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTTTEEEEEES
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCCCCCceeeEEEEecCCCCCCEEEEEec
Confidence            99999999999999999998775554321      1333445556777789999999999999999999888776

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=3e-26  Score=169.27  Aligned_cols=153  Identities=21%  Similarity=0.215  Sum_probs=112.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch--------hHhh
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV--------TSAY   83 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~   83 (223)
                      ..++|+|+|++|||||||+++|.+.... ....++++.++....+.+++.  .+.+|||||...+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            3579999999999999999999987543 223344455555666677764  4789999997542211        1235


Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN  163 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (223)
                      ++.+|++|+|+|++++.+++ ...|+..+......++|+++|+||+|+.+...       .++...+.+++++||+++.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            78999999999999988876 35677777665555799999999999864211       11122467899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEI  175 (223)
Q Consensus       164 i~~~~~~l~~~~  175 (223)
                      ++++|++|.+.+
T Consensus       153 v~~l~~~l~~~~  164 (172)
T 2gj8_A          153 VDVLRNHLKQSM  164 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=2.2e-25  Score=174.74  Aligned_cols=155  Identities=19%  Similarity=0.177  Sum_probs=117.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc------hhHhhh-
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA------VTSAYY-   84 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~-   84 (223)
                      ...++|+|+|++|||||||+++|++..+.....+..+.+.....+...+  ..+.+|||||...+..      +...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4568999999999999999999998776544444444444444444444  6788999999877654      224454 


Q ss_pred             -cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417           85 -RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN  163 (223)
Q Consensus        85 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (223)
                       ..+|++|+|+|+++.++..   .|...+...   +.|+++|+||+|+.+.+.+.. ....+++.++++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILEM---EKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHTT---TCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHhc---CCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence             5899999999999865533   355555443   699999999999875444432 36778888999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEI  175 (223)
Q Consensus       164 i~~~~~~l~~~~  175 (223)
                      ++++|++|.+.+
T Consensus       154 i~el~~~i~~~~  165 (258)
T 3a1s_A          154 LEELKEKIVEYA  165 (258)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=2.6e-25  Score=178.66  Aligned_cols=164  Identities=18%  Similarity=0.109  Sum_probs=125.1

Q ss_pred             cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchhhh---------
Q 027417            8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFR---------   77 (223)
Q Consensus         8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------   77 (223)
                      +......-.|+|+|.+|||||||+++|++..+..... +.++........... ....+.||||||+....         
T Consensus         4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~   82 (308)
T 3iev_A            4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSM   82 (308)
T ss_dssp             ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHH
Confidence            3456677899999999999999999999987654322 222222223333333 14678899999975433         


Q ss_pred             -chhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEE
Q 027417           78 -AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--LFFM  154 (223)
Q Consensus        78 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~  154 (223)
                       .....+++.+|++|+|+|++++.++.....|+..+...   +.|+++|+||+|+........+....+...++  .+++
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~  159 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV  159 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence             55667788999999999999988888888888877653   68999999999997445556677777888775  6799


Q ss_pred             EEccCCCCCHHHHHHHHHHHH
Q 027417          155 ETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       155 ~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ++||++|.|++++|+.|...+
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHS
T ss_pred             EEeCCCCCCHHHHHHHHHHhC
Confidence            999999999999999998765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=2.4e-26  Score=197.61  Aligned_cols=164  Identities=22%  Similarity=0.297  Sum_probs=125.6

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEE------EEE--CCEEEEEEEEeCCCchhhhchhH
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQK------MDI--NGKEVKAQIWDTAGQERFRAVTS   81 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~D~~G~~~~~~~~~   81 (223)
                      .....+||+|+|.+|||||||+++|++..+...+.++.+.++....      +.+  ++..+.+.+||+||++.+..+..
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3566799999999999999999999998887777788777766542      111  23457899999999999999999


Q ss_pred             hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027417           82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS  161 (223)
Q Consensus        82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (223)
                      .+++++|++|+|+|+++.   +.+..|+..+..... +.|+|+|+||+|+.+.+.+..++++.++...+++++++||++|
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999999865   556778888877654 6899999999999887788888889998899999999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVTEIYN  177 (223)
Q Consensus       162 ~~i~~~~~~l~~~~~~  177 (223)
                      .|++++++.|++.+.+
T Consensus       193 ~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLH  208 (535)
T ss_dssp             --CTTHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHhc
Confidence            9999999999887754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=9.5e-26  Score=177.95  Aligned_cols=153  Identities=18%  Similarity=0.182  Sum_probs=116.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh------chhHhhhc-
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR------AVTSAYYR-   85 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~-   85 (223)
                      ..++|+|+|++|||||||+++|++........+  |++.......+.. ...+.+|||||+..+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            358999999999999999999998764444343  3444444444555 5678899999987765      34555665 


Q ss_pred             -CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 027417           86 -GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNV  164 (223)
Q Consensus        86 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  164 (223)
                       .+|++|+|+|+++.++.   ..|...+..   .+.|+++|+||+|+.+.+.+. .....++..++++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999986544   345555544   378999999999986544443 3457788888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          165 TAAFQTVVTEI  175 (223)
Q Consensus       165 ~~~~~~l~~~~  175 (223)
                      +++|++|.+.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.92  E-value=6.9e-25  Score=164.33  Aligned_cols=157  Identities=18%  Similarity=0.195  Sum_probs=114.5

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC----------chhhhch
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----------QERFRAV   79 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~   79 (223)
                      +....++|+|+|++|||||||+++|++.... ...++.+.+........+.   .+.+|||||          .+.+...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL   94 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence            3456789999999999999999999988743 3344445444444433343   466999999          5667777


Q ss_pred             hHhhhcCC---CEEEEEEECCCHhh--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc--ccCHHHHHHHHHHc-CC
Q 027417           80 TSAYYRGA---VGALLVYDISRRQT--FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR--EVTTAEGKALAEAQ-GL  151 (223)
Q Consensus        80 ~~~~~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~-~~  151 (223)
                      +..+++.+   |++++|+|.++..+  ...+..|+...      +.|+++|+||+|+.+..  ....++...++... ++
T Consensus        95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 3pqc_A           95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY  168 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence            77777665   99999999987543  33344454432      68999999999997543  23345556666654 46


Q ss_pred             eEEEEccCCCCCHHHHHHHHHHHHH
Q 027417          152 FFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       152 ~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      +++++||++|.|++++|++|.+.+.
T Consensus       169 ~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          169 TIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             ceEEEecCCCCCHHHHHHHHHHHhh
Confidence            8999999999999999999987763

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=1.2e-25  Score=176.01  Aligned_cols=151  Identities=16%  Similarity=0.163  Sum_probs=116.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc----------hhHhhh
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA----------VTSAYY   84 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~~   84 (223)
                      .+|+|+|++|||||||+++|++........++.+.+.....+.+.+.  .+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            58999999999999999999998765555566566666666666664  778999999876553          455566


Q ss_pred             --cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027417           85 --RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS  162 (223)
Q Consensus        85 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (223)
                        ..+|++|+|+|+++.++...+..|+.      ..+.|+++|+||+|+.+.+.+.. ....+++.++++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              89999999999999766555444432      23789999999999865433222 2345777889999999999999


Q ss_pred             CHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTE  174 (223)
Q Consensus       163 ~i~~~~~~l~~~  174 (223)
                      |++++|++|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999753

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.91  E-value=1.6e-24  Score=166.03  Aligned_cols=163  Identities=17%  Similarity=0.147  Sum_probs=110.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEEC-CEEEEEEEEeCCCc----------hhhhch
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQ----------ERFRAV   79 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~----------~~~~~~   79 (223)
                      ....++|+|+|.+|||||||+++|++...........+.+.......+. .....+.||||||.          +.+...
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            3557999999999999999999999876322222222333333333343 33467889999994          344555


Q ss_pred             hHhhhcC---CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHH------
Q 027417           80 TSAYYRG---AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT--TAEGKALAEA------  148 (223)
Q Consensus        80 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~------  148 (223)
                      ...+++.   +|++|+|+|.+++.+. ....|+..+..   .+.|+++|+||+|+....+..  .++.......      
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  181 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY  181 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence            5566655   7889999999975432 22344555544   368999999999997643321  1222222222      


Q ss_pred             -cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417          149 -QGLFFMETSALDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       149 -~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  177 (223)
                       .+++++++||++|.|++++|++|.+.+..
T Consensus       182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          182 AGKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             CSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence             56779999999999999999999877643

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=2.7e-24  Score=169.90  Aligned_cols=155  Identities=19%  Similarity=0.133  Sum_probs=118.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc------hhHhhh--c
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA------VTSAYY--R   85 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~   85 (223)
                      .++|+|+|++|||||||+++|++..+.....++.+.+.....+...+.  .+.+|||||+..+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            589999999999999999999998765555566666666666666664  578999999877655      455555  6


Q ss_pred             CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417           86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  165 (223)
                      ++|++|+|+|+++..   ....|...+....  ..|+++|+||+|+.+.+..... ...+++.++++++++||++|.|++
T Consensus        81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           81 NADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             CCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             CCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence            899999999999863   2333444443332  2899999999998653333322 667788889999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          166 AAFQTVVTEIY  176 (223)
Q Consensus       166 ~~~~~l~~~~~  176 (223)
                      ++|+.+...+.
T Consensus       155 ~l~~~i~~~~~  165 (271)
T 3k53_A          155 ELKRMIALMAE  165 (271)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.91  E-value=1.2e-24  Score=172.18  Aligned_cols=153  Identities=17%  Similarity=0.162  Sum_probs=115.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc----------hhHhh
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA----------VTSAY   83 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~   83 (223)
                      .++|+|+|++|||||||+++|++........++.+.+.....+...+  ..+.+|||||+..+..          ....+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            58999999999999999999999876544455555555555555554  4567999999876552          22233


Q ss_pred             h--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027417           84 Y--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS  161 (223)
Q Consensus        84 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (223)
                      +  ..+|++|+|+|+++.+....+..|+...      +.|+++|+||+|+.+.+.+. .....+++.++++++++||++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence            3  7999999999999976655544444432      68999999999986533322 2245677788999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVTEI  175 (223)
Q Consensus       162 ~~i~~~~~~l~~~~  175 (223)
                      .|++++|++|.+.+
T Consensus       154 ~gi~el~~~i~~~~  167 (274)
T 3i8s_A          154 RGIEALKLAIDRYK  167 (274)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999987654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=4.8e-25  Score=168.49  Aligned_cols=144  Identities=17%  Similarity=0.298  Sum_probs=107.3

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC-
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP---NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG-   86 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~-   86 (223)
                      ....++|+|+|++|||||||+++|.+..+..   .+.++.+..+         ..+.+.+|||||++.+...+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            4567999999999999999999999877643   2333322222         34568899999999998888888877 


Q ss_pred             ---CCEEEEEEECC-CHhhHHHHHHHHHHHhhc----CCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHHHcCCe
Q 027417           87 ---AVGALLVYDIS-RRQTFDSIGRWLNELHTH----SDMNVVTILVGNKSDLKDAREVT------TAEGKALAEAQGLF  152 (223)
Q Consensus        87 ---~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~  152 (223)
                         +|++|+|+|++ ++.+++.+..|+..+...    ...+.|+++|+||+|+...+.+.      .+++..++...+++
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               89999999999 888999998888777543    34579999999999998765543      45567777777888


Q ss_pred             EEEEccCCCCC
Q 027417          153 FMETSALDSSN  163 (223)
Q Consensus       153 ~~~~Sa~~~~~  163 (223)
                      ++++||+++.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999998865

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.90  E-value=8e-23  Score=167.44  Aligned_cols=163  Identities=18%  Similarity=0.178  Sum_probs=120.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh---------chhHh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR---------AVTSA   82 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~   82 (223)
                      ...++|+++|++|||||||+++|.+........+..+.......+...  ...+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            456899999999999999999999876432222222223333333333  3568899999964321         11223


Q ss_pred             hhcCCCEEEEEEECCCHh--hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027417           83 YYRGAVGALLVYDISRRQ--TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD  160 (223)
Q Consensus        83 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (223)
                      ....+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+.....  .+++..++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence            445799999999999877  67888889888876554 799999999999976433  2456666777889999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~~~~~  179 (223)
                      |+|+++++++|.+.+....
T Consensus       320 g~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHH
Confidence            9999999999998875543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.90  E-value=3.2e-23  Score=174.90  Aligned_cols=157  Identities=18%  Similarity=0.128  Sum_probs=98.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchh--------Hhh
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT--------SAY   83 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~   83 (223)
                      ..++|+|+|++|||||||+|+|++.... ....++++.+.....+.+++  +.+.+|||||+..+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            3588999999999999999999987532 23334434455555566666  568899999987655433        335


Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN  163 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (223)
                      ++.+|++|+|+|++++.+++.+..+...+....  +.|+++|+||+|+......   ....+......+++++||++|.|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence            789999999999999887754333333333222  6899999999999865443   22334443347899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEIY  176 (223)
Q Consensus       164 i~~~~~~l~~~~~  176 (223)
                      +++++++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.90  E-value=2.4e-23  Score=166.50  Aligned_cols=156  Identities=20%  Similarity=0.166  Sum_probs=107.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCccceeEeEEEEEEECCEEEEEEEEeCCCchh--------hhchhHh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPN-SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--------FRAVTSA   82 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~   82 (223)
                      -...+|+|+|.+|||||||+++|++..+... ..+.++...........  ...+.+|||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            3457899999999999999999999877532 22222222222222223  46788999999765        4455667


Q ss_pred             hhcCCCEEEEEEECCCHhhHHHHHHHH-HHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHcCCeEEEEccCC
Q 027417           83 YYRGAVGALLVYDISRRQTFDSIGRWL-NELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAEAQGLFFMETSALD  160 (223)
Q Consensus        83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~  160 (223)
                      +++.+|++++|+|++++.+..  ..|+ ..+.... .+.|+++|+||+|+..... + .+.+..+  ....+++++||++
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~  156 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALD  156 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTC
T ss_pred             HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCC
Confidence            789999999999999865433  3443 4555443 3689999999999875433 1 1222222  1234699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEI  175 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~  175 (223)
                      |.|++++++.|.+.+
T Consensus       157 g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          157 ERQVAELKADLLALM  171 (301)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhc
Confidence            999999999987644

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.89  E-value=3.2e-23  Score=168.17  Aligned_cols=156  Identities=19%  Similarity=0.156  Sum_probs=116.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----hhchhHhhhc---CC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FRAVTSAYYR---GA   87 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~~~---~~   87 (223)
                      .+|+|+|.++||||||+++|++........+.++.......+.+++ ...+.+|||||...    +..+...+++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            4689999999999999999998654322222223333333444443 24678999999543    3334455544   59


Q ss_pred             CEEEEEEECCC---HhhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEEccCC
Q 027417           88 VGALLVYDISR---RQTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--LFFMETSALD  160 (223)
Q Consensus        88 d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  160 (223)
                      |++|+|+|+++   +.+++.+..|+.++..+..  ..+|+++|+||+|+....    +....+.+.+.  .+++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7889999999999887642  479999999999987532    34566667766  6799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEI  175 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~  175 (223)
                      +.|+++++++|.+.+
T Consensus       314 g~gi~eL~~~l~~~l  328 (342)
T 1lnz_A          314 REGLRELLFEVANQL  328 (342)
T ss_dssp             SSTTHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999998766

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.88  E-value=1.2e-23  Score=174.85  Aligned_cols=157  Identities=15%  Similarity=0.138  Sum_probs=113.6

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch-------hH
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV-------TS   81 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~   81 (223)
                      +....++|+|+|++|+|||||+++|++..+.. ...+.++.+.....+.+.+.. .+.+|||||+..+..+       ..
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence            34567999999999999999999999877632 223333444445555555432 7889999998776544       35


Q ss_pred             hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027417           82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS  161 (223)
Q Consensus        82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (223)
                      .++..+|++|+|+|++..   +....|+..+...   +.|+++|+||+|+...+..  +....+++.++++++++||++|
T Consensus       109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg  180 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK  180 (423)
T ss_dssp             HHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred             HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence            578899999999999433   3335666666554   6899999999999875543  6666777778899999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVTEI  175 (223)
Q Consensus       162 ~~i~~~~~~l~~~~  175 (223)
                      .|++++|++|.+.+
T Consensus       181 ~gI~eL~~~L~~~l  194 (423)
T 3qq5_A          181 KGFDDIGKTISEIL  194 (423)
T ss_dssp             TSTTTHHHHHHHHS
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999998766

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=3.9e-22  Score=167.55  Aligned_cols=200  Identities=20%  Similarity=0.105  Sum_probs=129.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhch-----------
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV-----------   79 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------   79 (223)
                      +..++|+|+|++|||||||+++|++.... ....++++.+.....+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            35699999999999999999999987542 222233333344455666775  5679999997433221           


Q ss_pred             -hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHH----HcCCeE
Q 027417           80 -TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK-ALAE----AQGLFF  153 (223)
Q Consensus        80 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~  153 (223)
                       ...+++.+|++++++|++++.+.+.. .+...+..   .++|+++|+||+|+.+.+....++.. .+..    ..++++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence             12356789999999999986655442 22222322   36899999999999865544444332 2222    335789


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHHHHhhhh-------hhhHhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027417          154 METSALDSSNVTAAFQTVVTEIYNILSRKV-------MISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS  222 (223)
Q Consensus       154 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  222 (223)
                      +++||++|.|++++|+.+.+.+.+.. .+.       .......  .++.+  ++.++.|..|....||.+-.+||
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~~~-~~i~t~~ln~~l~~~~~--~~~~~--~~~ki~y~~q~~~~p~~~~~~~n  402 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYASYT-TKVPSSAINSALQKVLA--FTNLP--RGLKIFFGVQVDIKPPTFLFFVN  402 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHT--TCCCS--TTCCEEEEEEEETTTTEEEEEES
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhhc-ccCCHHHHHHHHHHHHH--cCCCC--CCcEEEEEEecCCCCCEEEEEEc
Confidence            99999999999999999987654432 211       1111111  22222  88888898888888888777776

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.88  E-value=3.3e-22  Score=168.88  Aligned_cols=153  Identities=22%  Similarity=0.230  Sum_probs=113.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCch-hhhc--------hhHhh
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE-RFRA--------VTSAY   83 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-~~~~--------~~~~~   83 (223)
                      .++|+|+|.+|||||||+|+|++.... ....++++.+.....+.+++  ..+.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            389999999999999999999987543 33344445555556666666  467899999987 4432        23456


Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN  163 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (223)
                      ++.+|++|+|+|++++.+++...- ++.+     .++|+++|+||+|+.+.  ...++...++. .+++++++||++|.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~i-l~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRKI-LERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHHH-HHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHHH-HHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            789999999999999877765432 2333     26899999999999753  34455544432 346899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEIYN  177 (223)
Q Consensus       164 i~~~~~~l~~~~~~  177 (223)
                      +++++++|.+.+..
T Consensus       392 i~eL~~~l~~~~~~  405 (482)
T 1xzp_A          392 LEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.88  E-value=5.1e-22  Score=161.66  Aligned_cols=117  Identities=20%  Similarity=0.258  Sum_probs=99.0

Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCC----------HhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCC
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISR----------RQTFDSIGRWLNELHTH-SDMNVVTILVGNKSD  130 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D  130 (223)
                      .+.+.+|||+|++.++..|.+++++++++|+|+|+++          ..+++....|+..+... ...+.|+||++||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            4788999999999999999999999999999999999          46788888888887654 334799999999999


Q ss_pred             CCCCc---------------ccCHHHHHHHHH-----------HcCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027417          131 LKDAR---------------EVTTAEGKALAE-----------AQGLFFMETSALDSSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       131 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  178 (223)
                      +.+.+               .++.+++..++.           ..++.+++|||+++.||+++|++++..+.+.
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence            85322               356788888876           3567899999999999999999999887654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=1.4e-21  Score=164.23  Aligned_cols=151  Identities=25%  Similarity=0.297  Sum_probs=103.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchh---------hhchhHhhh
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER---------FRAVTSAYY   84 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~   84 (223)
                      .+|+|+|.||||||||+|+|++..... ...+.++.+.....+.+.+.  .+.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            479999999999999999999876432 22333333444555566664  567999999653         344566788


Q ss_pred             cCCCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH-HHHHHHcCC-eEEEEccCC
Q 027417           85 RGAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEG-KALAEAQGL-FFMETSALD  160 (223)
Q Consensus        85 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~  160 (223)
                      +.+|++|+|+|++++.+..  .+..|+..      .++|+++|+||+|+.+.  . ..++ .++. .+++ +++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            9999999999998865433  23444432      26899999999998532  1 1223 3443 4566 689999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~~~  177 (223)
                      |.|+.+++++|...+.+
T Consensus       150 g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          150 NINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccc
Confidence            99999999999887753

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.87  E-value=5e-21  Score=159.17  Aligned_cols=160  Identities=16%  Similarity=0.094  Sum_probs=114.8

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEE-------------------E---ECCEEEEEEE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM-------------------D---INGKEVKAQI   67 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~-------------------~---~~~~~~~~~l   67 (223)
                      .....++|+++|++++|||||+++|++.......    +........                   .   .......+.+
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL----GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF   79 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS----EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCccccccc----CccccceeeccccccccceecccccccccccccccccceEEE
Confidence            3456799999999999999999999985432211    111000000                   0   0113368899


Q ss_pred             EeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHH
Q 027417           68 WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKAL  145 (223)
Q Consensus        68 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~  145 (223)
                      |||||++.+...+...+..+|++|+|+|++++.++.....|+..+....  ..|+++|+||+|+.+..+.  ..++..++
T Consensus        80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~  157 (403)
T 3sjy_A           80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQF  157 (403)
T ss_dssp             EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999876777777776665443  2589999999999764321  12223333


Q ss_pred             HHHc---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          146 AEAQ---GLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       146 ~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ....   +++++++||++|.|++++++.|...+
T Consensus       158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            3222   56899999999999999999987644

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=1.6e-21  Score=151.27  Aligned_cols=162  Identities=13%  Similarity=0.172  Sum_probs=105.1

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc--cceeEeEEEEEEECCEEEEEEEEeCCCc-----------hhh
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKS--TIGVEFQTQKMDINGKEVKAQIWDTAGQ-----------ERF   76 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~-----------~~~   76 (223)
                      +....++|+|+|++|||||||+++|++..+.....+  +.+.........+.+  ..+.+|||||.           ..+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence            345679999999999999999999999877655544  333344444555555  46779999993           234


Q ss_pred             hchhHhhhcCCCEEEEEEECCCHhh--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHHH
Q 027417           77 RAVTSAYYRGAVGALLVYDISRRQT--FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT------TAEGKALAEA  148 (223)
Q Consensus        77 ~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~  148 (223)
                      ...+...++.+|++|+|+|+++...  ...+..+...+...  ...|+++|+||+|+.+...+.      .+..+.+.+.
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            4445555678999999999976433  22333333333221  136999999999987654333      2457778888


Q ss_pred             cCCeEEEEccCCC-----CCHHHHHHHHHHHH
Q 027417          149 QGLFFMETSALDS-----SNVTAAFQTVVTEI  175 (223)
Q Consensus       149 ~~~~~~~~Sa~~~-----~~i~~~~~~l~~~~  175 (223)
                      ++..++.++...+     .++.++|+.+...+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~  212 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVV  212 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence            8888888776644     57788887776544

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.87  E-value=2.2e-21  Score=164.46  Aligned_cols=156  Identities=18%  Similarity=0.141  Sum_probs=110.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCC----C---CCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDE----F---YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYY   84 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~   84 (223)
                      ...++|+++|++++|||||+++|++..    .   .....+.++.+.....+.+++  ..+.+|||||++.+...+...+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            457999999999999999999999865    1   122222222222223334444  6788999999999998899999


Q ss_pred             cCCCEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHc----CCeEEE
Q 027417           85 RGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEGKALAEAQ----GLFFME  155 (223)
Q Consensus        85 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~----~~~~~~  155 (223)
                      ..+|++|+|+|+++   +.+++.+.    .+..   .+.|+++++||+|+.+...  ...++..+++...    ++++++
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~  167 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP  167 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred             hhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence            99999999999998   55554433    2222   2578899999999975321  1234455555555    578999


Q ss_pred             EccCCCCCHHHHHHHHHHHHH
Q 027417          156 TSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       156 ~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      +||++|.|+++++++|...+.
T Consensus       168 vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          168 ISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EECcCCCCHHHHHHHHHHhhc
Confidence            999999999999999987653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.87  E-value=2.4e-21  Score=167.27  Aligned_cols=157  Identities=20%  Similarity=0.273  Sum_probs=111.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC--CCCC-----C------CccceeEeEEEEEEE-----CCEEEEEEEEeCCCch
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDE--FYPN-----S------KSTIGVEFQTQKMDI-----NGKEVKAQIWDTAGQE   74 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~--~~~~-----~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~   74 (223)
                      ...+|+|+|+.++|||||+++|+...  +...     .      ....|.+.......+     ++..+.++||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46899999999999999999998621  1100     0      011233332222222     4567899999999999


Q ss_pred             hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe--
Q 027417           75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF--  152 (223)
Q Consensus        75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--  152 (223)
                      .+...+...++.+|++|+|+|+++..+.+....|......    +.|+++|+||+|+...+  ..+...++...+++.  
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~----~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM----DLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT----TCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC----CCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            9999999999999999999999998777777777766542    68999999999998643  233345566666764  


Q ss_pred             -EEEEccCCCCCHHHHHHHHHHHH
Q 027417          153 -FMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       153 -~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                       ++++||++|.|+++++++|.+.+
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~l  180 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDI  180 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHS
T ss_pred             eEEEeecccCCCchhHHHHHhhcC
Confidence             89999999999999999988654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.87  E-value=7.1e-21  Score=155.78  Aligned_cols=158  Identities=16%  Similarity=0.106  Sum_probs=107.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc---------hhhhchhHhhhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ---------ERFRAVTSAYYRG   86 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~~~~~   86 (223)
                      .|+|+|++|||||||+++|++........+..+.+.....+.+++  ..+.+|||+|.         +.+...+. .+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHh
Confidence            499999999999999999998765433333334445556677777  45789999995         22333333 4688


Q ss_pred             CCEEEEEEECCCHh--hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHc---CCeEEEEccCC
Q 027417           87 AVGALLVYDISRRQ--TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAEAQ---GLFFMETSALD  160 (223)
Q Consensus        87 ~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~---~~~~~~~Sa~~  160 (223)
                      +|++++|+|++++.  ..+.+..|...+......+.|+++|+||+|+.+... ...+.+..++...   +.+++++||++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~  337 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK  337 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999999999876  566666666666554444789999999999875421 0112333344444   34689999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEIY  176 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~~  176 (223)
                      +.|++++++.|.+.+.
T Consensus       338 g~gi~~L~~~I~~~l~  353 (364)
T 2qtf_A          338 RTNLELLRDKIYQLAT  353 (364)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhc
Confidence            9999999999987653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=1.4e-20  Score=156.73  Aligned_cols=158  Identities=17%  Similarity=0.150  Sum_probs=104.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCc--cceeEeEEEEEEE-------------C--C----EEEEEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEF---YPNSKS--TIGVEFQTQKMDI-------------N--G----KEVKAQI   67 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l   67 (223)
                      ...++|+++|++++|||||+++|++...   .....+  |....+....+..             +  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            4569999999999999999999986432   222222  3333333322211             1  1    1378999


Q ss_pred             EeCCCchhhhchhHhhhcCCCEEEEEEECCC----HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHH
Q 027417           68 WDTAGQERFRAVTSAYYRGAVGALLVYDISR----RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAE  141 (223)
Q Consensus        68 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~  141 (223)
                      |||||++.|...+...+..+|++|+|+|+++    +++++.+..|    ....  ..|+++++||+|+.+...  ...++
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l~--~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EILG--IDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHTT--CCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHcC--CCeEEEEEEccCCCCHHHHHHHHHH
Confidence            9999999998888888888999999999995    4555554433    2111  257999999999976443  23456


Q ss_pred             HHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          142 GKALAEA---QGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       142 ~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      +.+++..   .+++++++||++|.|+++++++|...+
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            6666654   367899999999999999999987543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.86  E-value=1.7e-21  Score=156.45  Aligned_cols=117  Identities=18%  Similarity=0.218  Sum_probs=96.8

Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECC----------CHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCC
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS----------RRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSD  130 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D  130 (223)
                      .+.+++|||+|+++++..|.+++++++++|+|+|++          +..+++....|+..+... ...+.|+++++||+|
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D  245 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  245 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence            378899999999999999999999999999999665          567788887888777543 334799999999999


Q ss_pred             CCCCc----------------ccCHHHHHHHH----------HHcCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027417          131 LKDAR----------------EVTTAEGKALA----------EAQGLFFMETSALDSSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       131 l~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  178 (223)
                      +.+.+                ..+.+++..+.          ...++.++++||+++.||+.+|+.+...+++.
T Consensus       246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            86433                46778888774          34567789999999999999999999888654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.86  E-value=8.2e-21  Score=163.66  Aligned_cols=158  Identities=23%  Similarity=0.278  Sum_probs=114.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC-----CC------ccceeEeE----EEEEEE-CCEEEEEEEEeCCCc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARD--EFYPN-----SK------STIGVEFQ----TQKMDI-NGKEVKAQIWDTAGQ   73 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~--~~~~~-----~~------~~~~~~~~----~~~~~~-~~~~~~~~l~D~~G~   73 (223)
                      +...+|+|+|+.++|||||+++|++.  .+...     ..      ...|.+..    ...+.. ++..+.++||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            45789999999999999999999762  11110     00      00122211    111211 455689999999999


Q ss_pred             hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-
Q 027417           74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-  152 (223)
Q Consensus        74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  152 (223)
                      ..|...+...++.+|++|+|+|+++..+.+....|.....    .+.|+++++||+|+...+  ..+...++...+++. 
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9999889999999999999999999888888877866553    268999999999997643  223345566666763 


Q ss_pred             --EEEEccCCCCCHHHHHHHHHHHH
Q 027417          153 --FMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       153 --~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                        ++++||++|.|++++|++|++.+
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~l  182 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRI  182 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhc
Confidence              89999999999999999988655

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.86  E-value=2.8e-21  Score=151.61  Aligned_cols=164  Identities=16%  Similarity=0.164  Sum_probs=106.2

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCcc-ceeEeEEEEEEECCEEEEEEEEeCCCchhhhc---------
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKST-IGVEFQTQKMDINGKEVKAQIWDTAGQERFRA---------   78 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---------   78 (223)
                      +....++|+|+|++|||||||+++|++..... ...++ ++.+.........+  ..+.||||||+..+..         
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence            34567999999999999999999999876433 33332 23333444444454  5678999999755422         


Q ss_pred             --hhHhhhcCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEe-CCCCCCCcccCH-------HHHHHHHH
Q 027417           79 --VTSAYYRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGN-KSDLKDAREVTT-------AEGKALAE  147 (223)
Q Consensus        79 --~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~~~  147 (223)
                        .....++.+|++|+|+|+++... ...+..|+..+.... ...|+++++| |+|+... .+..       .+.+.+..
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence              22336789999999999986222 222334444432211 1356666665 9999743 2222       33445666


Q ss_pred             HcCCe---E--EEEccCCCCCHHHHHHHHHHHHHH
Q 027417          148 AQGLF---F--METSALDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       148 ~~~~~---~--~~~Sa~~~~~i~~~~~~l~~~~~~  177 (223)
                      .++..   +  +++||+++.|++++|+.|...+..
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            66643   2  789999999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.86  E-value=2.2e-22  Score=168.97  Aligned_cols=152  Identities=16%  Similarity=0.130  Sum_probs=99.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch--------hhhchhHhhhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE--------RFRAVTSAYYR   85 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~   85 (223)
                      .++|+|+|.+|||||||+++|++..... ...+.|++.......+......+.+|||||++        .+...+..+++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            3689999999999999999999876542 23344665555555555445678899999975        56667778889


Q ss_pred             CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCH
Q 027417           86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNV  164 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  164 (223)
                      .+|++|+|+|+.++.+...  .|+..+..  ..++|+++|+||+|+.....    +..++. ..++ .++++||++|.|+
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTH
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCCh
Confidence            9999999999998766443  33333222  23689999999999875321    111222 3455 6899999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          165 TAAFQTVVTEI  175 (223)
Q Consensus       165 ~~~~~~l~~~~  175 (223)
                      .++++++.+.+
T Consensus       153 ~~L~~~i~~~l  163 (436)
T 2hjg_A          153 GDLLDAVAEHF  163 (436)
T ss_dssp             HHHHHHHHHTG
T ss_pred             HHHHHHHHHhc
Confidence            99999998765

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.86  E-value=5.1e-22  Score=167.04  Aligned_cols=152  Identities=20%  Similarity=0.196  Sum_probs=102.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhH--------hh
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTS--------AY   83 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~--------~~   83 (223)
                      ..++|+|+|++|||||||+|+|++.... ....++++.+.....+.+++  ..+.+|||||...+.....        .+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            4589999999999999999999986543 22234434444444555666  4568999999766543332        25


Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN  163 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (223)
                      +..+|++|+|+|++++.+... ..|+..+.     ..|+++|+||+|+.......  ....+.  .+.+++++||++|.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            688999999999999766554 45555553     36999999999998654432  111111  356799999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEIY  176 (223)
Q Consensus       164 i~~~~~~l~~~~~  176 (223)
                      +++++++|.+.+.
T Consensus       371 i~eL~~~i~~~~~  383 (462)
T 3geh_A          371 IDSLETAILEIVQ  383 (462)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987663

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.86  E-value=1.2e-21  Score=156.82  Aligned_cols=155  Identities=18%  Similarity=0.119  Sum_probs=105.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCccceeEeEEEEEEECCEEEEEEEEeCCCch-h--------hhchhHh
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPN-SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE-R--------FRAVTSA   82 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-~--------~~~~~~~   82 (223)
                      ...+|+|+|++|||||||+++|++..+... ..+.++.......+...  ...+.+|||||+. .        +......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            446899999999999999999998765422 12211222222222223  3578899999986 2        2333455


Q ss_pred             hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCC
Q 027417           83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDS  161 (223)
Q Consensus        83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  161 (223)
                      +++.+|++++|+|.++   +.....|+.....  ..+.|+++++||+|+........+....+...++. .++++||+++
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            6788999999999977   3333334333222  23689999999999875222233445556566676 6999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVTE  174 (223)
Q Consensus       162 ~~i~~~~~~l~~~  174 (223)
                      .|++++++.|...
T Consensus       160 ~~v~~l~~~i~~~  172 (301)
T 1ega_A          160 LNVDTIAAIVRKH  172 (301)
T ss_dssp             TTHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999998854

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.86  E-value=2.4e-21  Score=157.66  Aligned_cols=119  Identities=16%  Similarity=0.169  Sum_probs=94.2

Q ss_pred             EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECC----------CHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCC
Q 027417           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS----------RRQTFDSIGRWLNELHTH-SDMNVVTILVGNKS  129 (223)
Q Consensus        61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~  129 (223)
                      ..+.+++|||+|++.++..|.+++++++++|+|||++          +..+++....|+..+... ...+.|++||+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5688999999999999999999999999999999998          788999999999888654 23479999999999


Q ss_pred             CCCCCcc--c-------------------CHHHHHHHHHH----------------cCCeEEEEccCCCCCHHHHHHHHH
Q 027417          130 DLKDARE--V-------------------TTAEGKALAEA----------------QGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus       130 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      |+.+.+.  +                   +.+++..++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9853211  1                   24666666432                123478999999999999999999


Q ss_pred             HHHHHHH
Q 027417          173 TEIYNIL  179 (223)
Q Consensus       173 ~~~~~~~  179 (223)
                      +.+.+..
T Consensus       341 ~~I~~~~  347 (354)
T 2xtz_A          341 ETLRRRN  347 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8876543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=5.8e-21  Score=160.20  Aligned_cols=160  Identities=19%  Similarity=0.177  Sum_probs=106.6

Q ss_pred             cccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCCCccceeEeEEEEE
Q 027417            8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFY-------------------------------PNSKSTIGVEFQTQKM   56 (223)
Q Consensus         8 ~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~   56 (223)
                      .......++|+++|++++|||||+++|++....                               ....+  |.+......
T Consensus        11 ~~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~--GiTid~~~~   88 (439)
T 3j2k_7           11 GAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDK--GKTVEVGRA   88 (439)
T ss_pred             CCCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhc--CceEEEeEE
Confidence            344567799999999999999999999653211                               01111  334444444


Q ss_pred             EECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhh---HHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCC
Q 027417           57 DINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQT---FDSIGRWLNELHTHSDMNVV-TILVGNKSDLK  132 (223)
Q Consensus        57 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~  132 (223)
                      .+......+.||||||++.|...+...+..+|++|+|+|+++...   |+....+...+......+.| +|+++||+|+.
T Consensus        89 ~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~  168 (439)
T 3j2k_7           89 YFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP  168 (439)
T ss_pred             EEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence            444445688999999999999999999999999999999998532   21111111121111122466 89999999986


Q ss_pred             CCc------ccCHHHHHHHHHHcC------CeEEEEccCCCCCHHHHHH
Q 027417          133 DAR------EVTTAEGKALAEAQG------LFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus       133 ~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  169 (223)
                      ...      +...++...++...+      ++++++||++|.|+.++++
T Consensus       169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            421      111233444554444      5799999999999999766

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.85  E-value=1.1e-21  Score=155.06  Aligned_cols=159  Identities=19%  Similarity=0.236  Sum_probs=93.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--------CccceeEeEEEEEEECCEEEEEEEEeCCCch-------hh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNS--------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQE-------RF   76 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-------~~   76 (223)
                      ...++|+|+|.+|+|||||+|+|++.......        .++.+.+.....+..++..+.+.+|||||..       .+
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            34699999999999999999998876554332        3444555555544445555789999999962       22


Q ss_pred             hchh-------Hhhhc-------------CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           77 RAVT-------SAYYR-------------GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        77 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      ..+.       ..++.             .+|+++++++.+.....+.-..++..+..    ++|+|+|+||+|+....+
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e  161 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE  161 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence            2222       22332             37899999987763222222344555543    699999999999875332


Q ss_pred             cC--HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417          137 VT--TAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       137 ~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      ..  .+...+.....+++++++|++++.|+.+++++|.+.
T Consensus       162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            21  233455566778999999999999999999887653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.85  E-value=1.3e-20  Score=156.97  Aligned_cols=160  Identities=19%  Similarity=0.182  Sum_probs=111.6

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCc--cceeEeEEEEEEE-------------C--C----EEEEE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEF---YPNSKS--TIGVEFQTQKMDI-------------N--G----KEVKA   65 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   65 (223)
                      .....++|+++|++++|||||+++|++...   .....+  |....+....+..             +  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            456779999999999999999999986432   122222  3333333322211             1  1    13689


Q ss_pred             EEEeCCCchhhhchhHhhhcCCCEEEEEEECCC----HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCH
Q 027417           66 QIWDTAGQERFRAVTSAYYRGAVGALLVYDISR----RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTT  139 (223)
Q Consensus        66 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~  139 (223)
                      .||||||++.|.......+..+|++|+|+|+++    +.+++.+..|.    ...  ..|+++++||+|+.+...  ...
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~----~~~--~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ----IIG--QKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH----HHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHH----HcC--CCcEEEEEECccCCCHHHHHHHH
Confidence            999999999998888888889999999999995    44555544332    111  257899999999986432  223


Q ss_pred             HHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          140 AEGKALAEA---QGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       140 ~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      +++.+++..   .+++++++||++|.|+++++++|...+
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            445555543   367899999999999999999987543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.85  E-value=6.2e-21  Score=155.75  Aligned_cols=118  Identities=19%  Similarity=0.200  Sum_probs=91.1

Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCC----------HhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCC
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISR----------RQTFDSIGRWLNELHTH-SDMNVVTILVGNKSD  130 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D  130 (223)
                      .+.+.+|||+|++.++..|.+++++++++|+|+|+++          ..+++....|+..+... ...+.|+||++||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            3788999999999999999999999999999999999          67899998888887654 334799999999999


Q ss_pred             CCCCc----------------ccCHHHHHHHHH-----------HcCCeEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 027417          131 LKDAR----------------EVTTAEGKALAE-----------AQGLFFMETSALDSSNVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       131 l~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  179 (223)
                      +.+.+                .++.+++..++.           ..++.+++|||+++.||+++|+++...+++..
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~  355 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  355 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence            86322                256778777652           34577999999999999999999998886544

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.85  E-value=2.6e-21  Score=164.35  Aligned_cols=154  Identities=19%  Similarity=0.113  Sum_probs=100.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------------------------CCccceeEeEEEEEEECCEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPN-----------------------------SKSTIGVEFQTQKMDINGKE   62 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   62 (223)
                      ...+||+++|++++|||||+++|++......                             .....|.+.......+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            4579999999999999999999976411000                             00011333333333344445


Q ss_pred             EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHH------HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDS------IGRWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      +.+.||||||++.+...+..++..+|++|+|+|++++.++..      ....+..+... . ..|+|+|+||+|+.+.++
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~-~~~iIvviNK~Dl~~~~~  188 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G-IHNLIIAMNKMDNVDWSQ  188 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T-CCCEEEEEECGGGGTTCH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C-CCcEEEEEECcCcccchH
Confidence            678999999999999999999999999999999999754322      11122222222 1 256999999999986433


Q ss_pred             cCHHHHH----HHHHHc-----CCeEEEEccCCCCCHHHH
Q 027417          137 VTTAEGK----ALAEAQ-----GLFFMETSALDSSNVTAA  167 (223)
Q Consensus       137 ~~~~~~~----~~~~~~-----~~~~~~~Sa~~~~~i~~~  167 (223)
                      ...++..    .+....     +++++++||++|.|+.++
T Consensus       189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            3333333    333333     457999999999999864

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=4.3e-22  Score=163.07  Aligned_cols=164  Identities=19%  Similarity=0.330  Sum_probs=92.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCC--------ccceeEeEEEEEEECCEEEEEEEEeCCCc-------hh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSK--------STIGVEFQTQKMDINGKEVKAQIWDTAGQ-------ER   75 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------~~   75 (223)
                      ...++|+|+|++|+|||||+++|++..... .+.        ++.+.......+...+..+.+++|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            456899999999999999999987654332 211        33333333333444566778999999998       56


Q ss_pred             hhchhH-------hhhcCCCE-----------EEEEEECCC-HhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           76 FRAVTS-------AYYRGAVG-----------ALLVYDISR-RQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        76 ~~~~~~-------~~~~~~d~-----------~i~v~d~~~-~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      +..+..       .+++.+++           .+++|++++ ..++..+. .|+..+    ..+.|+|+|+||+|+...+
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~  190 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK  190 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence            666665       55543322           234555444 34454443 444443    2478999999999998655


Q ss_pred             ccCH--HHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHHHh
Q 027417          136 EVTT--AEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS  180 (223)
Q Consensus       136 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  180 (223)
                      ++..  +++..++...+++++++||+++.+ ++.|..+.+.+.+..+
T Consensus       191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence            5443  566777777899999999999999 8889888887765443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=4.2e-21  Score=143.73  Aligned_cols=117  Identities=19%  Similarity=0.335  Sum_probs=88.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC-
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP---NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG-   86 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~-   86 (223)
                      ....++|+|+|++|||||||+++|.+..+..   ...++.+.         ....+.+.+|||||+..+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            3567999999999999999999999876543   11222111         1134567899999998888777777765 


Q ss_pred             ---CCEEEEEEECC-CHhhHHHHHHHHHHHhhc----CCCCCcEEEEEeCCCCCCCcc
Q 027417           87 ---AVGALLVYDIS-RRQTFDSIGRWLNELHTH----SDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        87 ---~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                         +|++|+|+|++ +..++..+..|+..+...    ...+.|+++|+||+|+.+...
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence               89999999999 899999998888776543    334799999999999986543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.83  E-value=1.2e-21  Score=164.39  Aligned_cols=157  Identities=20%  Similarity=0.224  Sum_probs=106.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCC----------------------C-----ccceeEeEEEEEEECCEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARD--EFYPNS----------------------K-----STIGVEFQTQKMDINGKE   62 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~--~~~~~~----------------------~-----~~~~~~~~~~~~~~~~~~   62 (223)
                      ...++|+++|++++|||||+++|++.  .+....                      +     ...|.+.......+....
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45699999999999999999999864  221100                      0     001222222223333344


Q ss_pred             EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhc----CCCC-CcEEEEEeCCCCCCCc--
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTH----SDMN-VVTILVGNKSDLKDAR--  135 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~-~p~ivv~nK~Dl~~~~--  135 (223)
                      +.+.||||||++.|...+..++..+|++|+|+|+++ .+|+.+..|......+    ...+ .|+++++||+|+.+..  
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~  162 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD  162 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence            678899999999999999999999999999999999 6777654433222211    1113 4689999999997621  


Q ss_pred             ----ccCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 027417          136 ----EVTTAEGKALAEAQG-----LFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus       136 ----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  169 (223)
                          +...++.+.++...+     ++++++||++|.|+.++++
T Consensus       163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                122355666777665     6799999999999986654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.83  E-value=1e-22  Score=173.37  Aligned_cols=158  Identities=19%  Similarity=0.172  Sum_probs=111.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..++|+|+|++++|||||+++|.+..+.....++++.++....+..+ ....++||||||++.|..++..++..+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            46889999999999999999999876654444444443333333231 22367899999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHH---HHHc--CCeEEEEccCCCCCHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV-TTAEGKAL---AEAQ--GLFFMETSALDSSNVTA  166 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~  166 (223)
                      |+|+++....+....| ..+.   ..+.|+++++||+|+...+.. ...+...+   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            9999986554444333 2222   236899999999998753221 11111111   1111  34799999999999999


Q ss_pred             HHHHHHHHH
Q 027417          167 AFQTVVTEI  175 (223)
Q Consensus       167 ~~~~l~~~~  175 (223)
                      +|+.|...+
T Consensus       158 Lle~I~~l~  166 (537)
T 3izy_P          158 LAEATIALA  166 (537)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.83  E-value=8.8e-20  Score=150.17  Aligned_cols=118  Identities=17%  Similarity=0.175  Sum_probs=96.6

Q ss_pred             EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCC----------HhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCC
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISR----------RQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDL  131 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl  131 (223)
                      +.+++|||+|++.++..|..++++++++|+|||+++          ..+|+.+..|+..+... ...+.|++||+||+|+
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL  296 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  296 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence            788999999999999999999999999999999999          88999999999998765 3457999999999998


Q ss_pred             CCCcc---c---------------------------CHHHHHHHH-----HH--------cCCeEEEEccCCCCCHHHHH
Q 027417          132 KDARE---V---------------------------TTAEGKALA-----EA--------QGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus       132 ~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      .+.+.   +                           ..+++..++     ..        ..+.+++|||+++.||+++|
T Consensus       297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF  376 (402)
T 1azs_C          297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF  376 (402)
T ss_dssp             HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred             hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence            54221   1                           135566553     22        24668899999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027417          169 QTVVTEIYNILS  180 (223)
Q Consensus       169 ~~l~~~~~~~~~  180 (223)
                      +++...+.+...
T Consensus       377 ~~v~~~I~~~~l  388 (402)
T 1azs_C          377 NDCRDIIQRMHL  388 (402)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999887765543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.83  E-value=1.8e-20  Score=151.05  Aligned_cols=117  Identities=19%  Similarity=0.242  Sum_probs=95.0

Q ss_pred             EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECC----------CHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCC
Q 027417           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS----------RRQTFDSIGRWLNELHTH-SDMNVVTILVGNKS  129 (223)
Q Consensus        61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~  129 (223)
                      ..+.+++||++|+++++..|.+++++++++|+|+|++          +..++.....|+..+... ...+.|++|++||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            3478899999999999999999999999999999998          678888888888877544 33579999999999


Q ss_pred             CCCCCc---------------ccCHHHHHHHHH-Hc--------------------------CCeEEEEccCCCCCHHHH
Q 027417          130 DLKDAR---------------EVTTAEGKALAE-AQ--------------------------GLFFMETSALDSSNVTAA  167 (223)
Q Consensus       130 Dl~~~~---------------~~~~~~~~~~~~-~~--------------------------~~~~~~~Sa~~~~~i~~~  167 (223)
                      |+.+.+               ....+++.++.. ..                          .+.++++||++..||+.+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            975311               124566655443 22                          367899999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          168 FQTVVTEIYN  177 (223)
Q Consensus       168 ~~~l~~~~~~  177 (223)
                      |+.+...+++
T Consensus       319 F~~v~~~Il~  328 (340)
T 4fid_A          319 FMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998877

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.83  E-value=1.4e-20  Score=154.40  Aligned_cols=147  Identities=12%  Similarity=0.084  Sum_probs=106.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      +|+++|++++|||||+++|+..          +.+.......+......+.+|||||++.|.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            9999999999999999999811          222222222333344568899999999998888888899999999999


Q ss_pred             CCCHhhHHHHHHHHHHHhhcCCCCCcE-EEEEe-CCCCCCCcccCH--HHHHHHHHHc---CCeEEE--EccCC---CCC
Q 027417           96 ISRRQTFDSIGRWLNELHTHSDMNVVT-ILVGN-KSDLKDAREVTT--AEGKALAEAQ---GLFFME--TSALD---SSN  163 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~~  163 (223)
                       +. ..+.....|+..+...   +.|. ++++| |+|+ +...+..  ++.++++...   .+++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             43 3344455555555433   4666 88899 9999 5322221  4455555544   368999  99999   999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEIYNI  178 (223)
Q Consensus       164 i~~~~~~l~~~~~~~  178 (223)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999998776443

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.83  E-value=1.4e-20  Score=156.06  Aligned_cols=158  Identities=17%  Similarity=0.108  Sum_probs=108.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC------CCC--------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFY------PNS--------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA   78 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~   78 (223)
                      ..++|+++|++++|||||+++|++....      ...        ....|.+.......+......+.||||||++.|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            4589999999999999999999873110      000        01123344333444444446788999999999988


Q ss_pred             hhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcc---cCHHHHHHHHHHcC----
Q 027417           79 VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDARE---VTTAEGKALAEAQG----  150 (223)
Q Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~----  150 (223)
                      .+...+..+|++|+|+|+++....+....| ..+..   .+.| +++++||+|+....+   ...++.++++...+    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            888899999999999999985443333333 33332   2577 689999999874221   12345666777666    


Q ss_pred             -CeEEEEccCCCCC----------HHHHHHHHHHH
Q 027417          151 -LFFMETSALDSSN----------VTAAFQTVVTE  174 (223)
Q Consensus       151 -~~~~~~Sa~~~~~----------i~~~~~~l~~~  174 (223)
                       ++++++||++|.|          +.++++.|...
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~  192 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence             5899999999764          77777776543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.83  E-value=4.8e-21  Score=161.68  Aligned_cols=154  Identities=17%  Similarity=0.120  Sum_probs=101.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCC--------chhhhchhHhh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG--------QERFRAVTSAY   83 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G--------~~~~~~~~~~~   83 (223)
                      ....+|+|+|.+|||||||+++|++..+.. ...+.|++.......+......+.+|||||        ++.+......+
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            446899999999999999999999876542 233446666666666666667889999999        66777788888


Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSS  162 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (223)
                      ++.+|++|+|+|..+..+  ....|+..+...  .++|+++|+||+|+.+..    ....++. ..+. .++++||++|.
T Consensus       100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~  170 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGL  170 (456)
T ss_dssp             HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCT
T ss_pred             HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeeccccc
Confidence            999999999999877433  223333333222  479999999999986432    1111121 2333 36799999999


Q ss_pred             CHHHHHHHHHHHH
Q 027417          163 NVTAAFQTVVTEI  175 (223)
Q Consensus       163 ~i~~~~~~l~~~~  175 (223)
                      |+.++++.+...+
T Consensus       171 gv~~L~~~i~~~l  183 (456)
T 4dcu_A          171 GLGDLLDAVAEHF  183 (456)
T ss_dssp             THHHHHHHHHTTG
T ss_pred             chHHHHHHHHhhc
Confidence            9999999987644

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.82  E-value=7.7e-21  Score=158.16  Aligned_cols=151  Identities=18%  Similarity=0.126  Sum_probs=104.2

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCC--CC-----ccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARD--------EFYPN--SK-----STIGVEFQTQKMDINGKEVKAQIWDTAGQ   73 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~--------~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   73 (223)
                      ......++|+++|++++|||||+++|++.        .+...  .+     ...|.+.......+......+.||||||+
T Consensus         6 ~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~   85 (405)
T 2c78_A            6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH   85 (405)
T ss_dssp             ---CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred             cCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence            34556799999999999999999999873        11100  00     12233333334444444467889999999


Q ss_pred             hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcc---cCHHHHHHHHHHc
Q 027417           74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDARE---VTTAEGKALAEAQ  149 (223)
Q Consensus        74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~  149 (223)
                      +.|...+...+..+|++|+|+|+++.... ....|+..+...   +.| +++++||+|+....+   ...++...++...
T Consensus        86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~  161 (405)
T 2c78_A           86 ADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY  161 (405)
T ss_dssp             GGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence            99988888899999999999999986543 334455554432   577 889999999974221   1123556666666


Q ss_pred             C-----CeEEEEccCCCCC
Q 027417          150 G-----LFFMETSALDSSN  163 (223)
Q Consensus       150 ~-----~~~~~~Sa~~~~~  163 (223)
                      +     ++++++||++|.|
T Consensus       162 ~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          162 EFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             TSCTTTSCEEECCHHHHHH
T ss_pred             cccccCCCEEEccHHHhhh
Confidence            5     6799999999987

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.82  E-value=6.5e-20  Score=158.39  Aligned_cols=157  Identities=18%  Similarity=0.152  Sum_probs=106.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CccceeEeEEEEE------------EECCEEEEEEEEeCCCchhh
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNS----KSTIGVEFQTQKM------------DINGKEVKAQIWDTAGQERF   76 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~l~D~~G~~~~   76 (223)
                      ..++|+|+|++++|||||+++|++..+....    .++.+..+.....            .++.....++||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            4579999999999999999999876543221    1222322221100            00001125889999999999


Q ss_pred             hchhHhhhcCCCEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC------------HH-
Q 027417           77 RAVTSAYYRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT------------TA-  140 (223)
Q Consensus        77 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~------------~~-  140 (223)
                      ...+...++.+|++|+|+|+++   +.+++.+..+    ..   .+.|+++++||+|+.......            .+ 
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9999888999999999999999   6776655432    22   268999999999986421100            00 


Q ss_pred             ----------HHHHHHHHc---------------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417          141 ----------EGKALAEAQ---------------GLFFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       141 ----------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                                +........               .++++++||++|.|+++++++|...+.
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                      111111222               237999999999999999999987654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.82  E-value=7.4e-20  Score=153.47  Aligned_cols=157  Identities=21%  Similarity=0.212  Sum_probs=105.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCC--CCC----------CCccc-------------------eeEeEEEEEEEC
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEF--YPN----------SKSTI-------------------GVEFQTQKMDIN   59 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~--~~~----------~~~~~-------------------~~~~~~~~~~~~   59 (223)
                      ....++|+++|++++|||||+++|++...  ...          ...++                   |.+.......+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            35569999999999999999999986531  110          00110                   112222222233


Q ss_pred             CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--c
Q 027417           60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--V  137 (223)
Q Consensus        60 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~  137 (223)
                      .....+.+|||||++.|...+...+..+|++|+|+|++++...+ ...|+..+....  ..|+|+|+||+|+.+..+  +
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLLG--IKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHH
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHHH
Confidence            33467889999999999888888999999999999999864322 233443333321  246899999999975321  1


Q ss_pred             --CHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHHH
Q 027417          138 --TTAEGKALAEAQG-----LFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus       138 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~~  170 (223)
                        ..++...++..++     ++++++||++|.|+.++++.
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence              2345566677777     67999999999999986543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.82  E-value=5.1e-20  Score=157.23  Aligned_cols=117  Identities=16%  Similarity=0.110  Sum_probs=83.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCC-----CccceeEeEEEEEEECCEEEEEEEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFY-----------------PNS-----KSTIGVEFQTQKMDINGKEVKAQIW   68 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~-----------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~   68 (223)
                      .....+|+|+|++|+|||||+++|+.....                 ...     ....+.......+...  .+.+.||
T Consensus        10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~li   87 (528)
T 3tr5_A           10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLL   87 (528)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEE
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEE
Confidence            345689999999999999999999621000                 000     0011111122223333  4678899


Q ss_pred             eCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        69 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      ||||+..+...+..+++.+|++|+|+|+++..+......|.. +..   .++|+++|+||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHT---TTCCEEEEEECTTSCC
T ss_pred             ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH---cCCCEEEEEeCCCCcc
Confidence            999999999999999999999999999999777666655533 222   2689999999999865

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.81  E-value=6.7e-21  Score=165.37  Aligned_cols=157  Identities=20%  Similarity=0.144  Sum_probs=102.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----------------------------ccceeEeEEEEEEECCEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-----------------------------STIGVEFQTQKMDINGKE   62 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   62 (223)
                      ...++|+|+|++++|||||+++|++........                             ...|++.......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            457999999999999999999998753221110                             001233322222333344


Q ss_pred             EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhh---HHHHHHHHHHHhhcCCCC-CcEEEEEeCCCCCCCcccC
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQT---FDSIGRWLNELHTHSDMN-VVTILVGNKSDLKDAREVT  138 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~-~p~ivv~nK~Dl~~~~~~~  138 (223)
                      +.+.||||||++.+...+...+..+|++|+|+|++++..   +.....+...+......+ .|+|+|+||+|+...++..
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~  324 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR  324 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence            678899999999999999999999999999999987521   101111111111111113 4589999999998633322


Q ss_pred             H----HHHHHHHHHc-----CCeEEEEccCCCCCHHHHH
Q 027417          139 T----AEGKALAEAQ-----GLFFMETSALDSSNVTAAF  168 (223)
Q Consensus       139 ~----~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~  168 (223)
                      .    ++...++...     +++++++||++|.|+.++.
T Consensus       325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             HHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence            2    2333344444     3589999999999998763

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.81  E-value=1.1e-20  Score=159.73  Aligned_cols=156  Identities=16%  Similarity=0.130  Sum_probs=91.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcC--CCCC----------------------CCC-----ccceeEeEEE--EEEECC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARD--EFYP----------------------NSK-----STIGVEFQTQ--KMDING   60 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~--~~~~----------------------~~~-----~~~~~~~~~~--~~~~~~   60 (223)
                      ...++|+++|++++|||||+++|++.  .+..                      ..+     ...|.+....  .+..+ 
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~-  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE-  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence            56799999999999999999999752  1110                      000     0012222221  22233 


Q ss_pred             EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCH---hhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCc-
Q 027417           61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR---QTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAR-  135 (223)
Q Consensus        61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~-  135 (223)
                       ...+.||||||++.|...+...+..+|++|+|+|+++.   .+|+....|...+......++| +|+++||+|+.... 
T Consensus       120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence             36788999999999999888899999999999999986   2333222233332222223566 89999999996421 


Q ss_pred             -----ccCHHHHHHHHHHc-------CCeEEEEccCCCCCHHHHHH
Q 027417          136 -----EVTTAEGKALAEAQ-------GLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus       136 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~  169 (223)
                           +...++...++...       +++++++||++|.|+.++++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~  244 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  244 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence                 11223455666655       46699999999999988763

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.80  E-value=2.5e-20  Score=148.87  Aligned_cols=162  Identities=17%  Similarity=0.214  Sum_probs=103.6

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC------Cccc-----------------e---eEeE-----------
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS------KSTI-----------------G---VEFQ-----------   52 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~------~~~~-----------------~---~~~~-----------   52 (223)
                      .....++|+|+|.+|||||||+++|++..+.+..      .++.                 |   ++..           
T Consensus        22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~  101 (299)
T 2aka_B           22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD  101 (299)
T ss_dssp             TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence            3456789999999999999999999998764211      1210                 0   0000           


Q ss_pred             ------------EEEEEE-CCEEEEEEEEeCCCch-------------hhhchhHhhhcCCCEEE-EEEECCCHhhHHHH
Q 027417           53 ------------TQKMDI-NGKEVKAQIWDTAGQE-------------RFRAVTSAYYRGAVGAL-LVYDISRRQTFDSI  105 (223)
Q Consensus        53 ------------~~~~~~-~~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~  105 (223)
                                  ...+.+ ......+.||||||..             .+......+++.++.+| +|+|+++..+....
T Consensus       102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~  181 (299)
T 2aka_B          102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA  181 (299)
T ss_dssp             HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred             HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence                        000000 0012578899999953             34556667888888776 79999886554443


Q ss_pred             HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--C-CeEEEEccCCCCCHHHHHHHHHHH
Q 027417          106 GRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ--G-LFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       106 ~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      ..|+..+.   ..+.|+++|+||+|+.+......+.........  + .+++++||+++.|+++++++|...
T Consensus       182 ~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          182 LKIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            34555543   346899999999999764432222222110011  2 357889999999999999998763

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.80  E-value=2.2e-21  Score=163.92  Aligned_cols=153  Identities=18%  Similarity=0.214  Sum_probs=105.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ++.++|+++|++++|||||+++|.+..+.....+.++.+.....+..++  ..++||||||++.|..++...+..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            3568999999999999999999987655433322222222112222233  46789999999999999988899999999


Q ss_pred             EEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc--ccCHHH--HHHHHHHcC--CeEEEEccCCCC
Q 027417           92 LVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR--EVTTAE--GKALAEAQG--LFFMETSALDSS  162 (223)
Q Consensus        92 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~--~~~~~~~~~--~~~~~~Sa~~~~  162 (223)
                      +|+|+++   +.+.+.+    ..+..   .+.|+++++||+|+...+  .+..+.  ...++..++  ++++++||++|.
T Consensus        80 LVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             EEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            9999988   4444432    22222   268999999999997531  111110  001112222  689999999999


Q ss_pred             CHHHHHHHHHH
Q 027417          163 NVTAAFQTVVT  173 (223)
Q Consensus       163 ~i~~~~~~l~~  173 (223)
                      |++++|++|..
T Consensus       153 gI~eLle~I~~  163 (501)
T 1zo1_I          153 GIDELLDAILL  163 (501)
T ss_dssp             TCTTHHHHTTT
T ss_pred             Ccchhhhhhhh
Confidence            99999999863

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.80  E-value=2.4e-19  Score=135.90  Aligned_cols=156  Identities=17%  Similarity=0.183  Sum_probs=100.3

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----------hhchh
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----------FRAVT   80 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~   80 (223)
                      .....+|+|+|++|||||||+++|.+..+.....++.|.+.....+.+.+   .+.+||+||...          +....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34568999999999999999999998764333344555554433333333   466999999632          23333


Q ss_pred             Hhhh---cCCCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcC--C
Q 027417           81 SAYY---RGAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEGKALAEAQG--L  151 (223)
Q Consensus        81 ~~~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~  151 (223)
                      ..++   ..++++++++|++++.+..  .+..|+..      .+.|+++++||+|+.+..+  ...+.++.++...+  +
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            3344   5789999999999865543  23334321      2588999999999875321  12345555655554  4


Q ss_pred             eEEEEccCCCCCHHHHHHHHHHHH
Q 027417          152 FFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       152 ~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      .++++||+++.|++++++.|.+.+
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHH
Confidence            588999999999999999987654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.79  E-value=2.9e-19  Score=161.52  Aligned_cols=160  Identities=17%  Similarity=0.121  Sum_probs=107.4

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------CCCccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDE-------FYP-------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER   75 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   75 (223)
                      .....++|+++|++++|||||+++|++..       +..       ....+.|.++....+.++.....+.||||||++.
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            44567999999999999999999998631       000       0011223333333334444456788999999999


Q ss_pred             hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcc---cCHHHHHHHHHHcC-
Q 027417           76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDARE---VTTAEGKALAEAQG-  150 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-  150 (223)
                      |...+...+..+|++|+|+|+++....+. ..|+..+...   ++| +|+++||+|+.+..+   ...++...++...+ 
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~  447 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence            99888889999999999999998543222 3333444332   577 789999999975322   12345666777665 


Q ss_pred             ----CeEEEEccCCC--------CCHHHHHHHHHH
Q 027417          151 ----LFFMETSALDS--------SNVTAAFQTVVT  173 (223)
Q Consensus       151 ----~~~~~~Sa~~~--------~~i~~~~~~l~~  173 (223)
                          ++++++||++|        .|+.++++.|..
T Consensus       448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~  482 (1289)
T 3avx_A          448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS  482 (1289)
T ss_dssp             CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence                57999999999        356666666654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.79  E-value=3.4e-20  Score=156.31  Aligned_cols=155  Identities=18%  Similarity=0.157  Sum_probs=102.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC------------------C----C-----ccceeEeEEEEEEECCE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARD--EFYPN------------------S----K-----STIGVEFQTQKMDINGK   61 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~--~~~~~------------------~----~-----~~~~~~~~~~~~~~~~~   61 (223)
                      ....++|+++|++++|||||+++|++.  .+...                  +    +     ...|.+.......+...
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~   83 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence            346799999999999999999999864  11100                  0    0     00122221111223334


Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh---hHH---HHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCC
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ---TFD---SIGRWLNELHTHSDMNVV-TILVGNKSDLKDA  134 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~  134 (223)
                      ...+.||||||++.|...+...+..+|++|+|+|+++..   +|+   ....++..+..   .+.| +|+++||+|+.+.
T Consensus        84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~  160 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKW  160 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTT
T ss_pred             CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccC
Confidence            467899999999999999999999999999999999763   231   11222222222   2455 8999999999742


Q ss_pred             cc----cCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHH
Q 027417          135 RE----VTTAEGKALAEAQG-----LFFMETSALDSSNVTAAF  168 (223)
Q Consensus       135 ~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  168 (223)
                      .+    ...++...++...+     ++++++||++|.|+.++.
T Consensus       161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~  203 (458)
T 1f60_A          161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT  203 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence            11    12344555666665     679999999999997553

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.77  E-value=5.3e-18  Score=133.13  Aligned_cols=124  Identities=16%  Similarity=0.171  Sum_probs=84.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhc-----
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYR-----   85 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~-----   85 (223)
                      ...++|+|+|.+|+|||||+++|++..... ...+..+.......+..++  ..+.+|||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            457999999999999999999999877532 2222223333444445555  47889999998776555444433     


Q ss_pred             ----CCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCC--CcEEEEEeCCCCCCCcccC
Q 027417           86 ----GAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMN--VVTILVGNKSDLKDAREVT  138 (223)
Q Consensus        86 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~~~~  138 (223)
                          .+|++|+|++++... +... ..|+..+.......  .|+++|+||+|+...+...
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  170 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS  170 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence                789999999998754 3333 46666665543222  4899999999986443333

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.77  E-value=4.8e-18  Score=149.68  Aligned_cols=165  Identities=16%  Similarity=0.174  Sum_probs=109.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCccceeEeEE-------EEE---------------------------
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPN-SKSTIGVEFQT-------QKM---------------------------   56 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~-------~~~---------------------------   56 (223)
                      ...++|+|+|.+|+|||||+|+|++..+.+. ..+++......       ...                           
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            3568999999999999999999998775442 23332110000       011                           


Q ss_pred             -------------------EECCEE--EEEEEEeCCCchh---hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHH
Q 027417           57 -------------------DINGKE--VKAQIWDTAGQER---FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNEL  112 (223)
Q Consensus        57 -------------------~~~~~~--~~~~l~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i  112 (223)
                                         ..+...  ..+.||||||...   .......+++.+|++|+|+|++++.+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                               111000  2578999999655   3345556789999999999999988877777676554


Q ss_pred             hhcCCCCCcEEEEEeCCCCCCCcccCHH----------HHHH-----HHHH--------cCCeEEEEccC----------
Q 027417          113 HTHSDMNVVTILVGNKSDLKDAREVTTA----------EGKA-----LAEA--------QGLFFMETSAL----------  159 (223)
Q Consensus       113 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~----------  159 (223)
                      ..   .+.|+++|+||+|+.....++.+          ....     +...        ...+++++||+          
T Consensus       227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~  303 (695)
T 2j69_A          227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP  303 (695)
T ss_dssp             TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred             Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence            33   25789999999998643211111          1111     1111        12369999999          


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHH
Q 027417          160 ----DSSNVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       160 ----~~~~i~~~~~~l~~~~~~~~  179 (223)
                          ++.|+.++++.|...+....
T Consensus       304 ~~~~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          304 QADLDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             TCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred             hhhhhccCHHHHHHHHHHHHHHhH
Confidence                99999999999988765433

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.77  E-value=4.8e-19  Score=145.21  Aligned_cols=158  Identities=13%  Similarity=0.147  Sum_probs=105.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccce-eEeEE------------E-------------------------
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIG-VEFQT------------Q-------------------------   54 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~-~~~~~------------~-------------------------   54 (223)
                      ...+|+|+|++|||||||+++|++..+.+....+.+ .....            .                         
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            456999999999999999999999776433221111 00000            0                         


Q ss_pred             --------------EEEE-CCEEEEEEEEeCCCchhh-------------hchhHhhhcCCCEEEEEEECCCHhhHHHHH
Q 027417           55 --------------KMDI-NGKEVKAQIWDTAGQERF-------------RAVTSAYYRGAVGALLVYDISRRQTFDSIG  106 (223)
Q Consensus        55 --------------~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  106 (223)
                                    ...+ ......+++|||||...+             ..+...++..+|++|+++|..+.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                          0000 011235789999997665             556677889999999999876543222  3


Q ss_pred             HHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417          107 RWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus       107 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      .|+..+......+.|+++|+||+|+.+......+....+....+.+|+++++.++.++++.+..+.
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence            445555555555789999999999986555445545544556678899999999888877655543

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.76  E-value=8.9e-20  Score=157.91  Aligned_cols=152  Identities=22%  Similarity=0.218  Sum_probs=82.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------------------CccceeEeEEEEEEECCE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-----------------------------KSTIGVEFQTQKMDINGK   61 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   61 (223)
                      ....++|+|+|++++|||||+++|++.......                             ....|++.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            456789999999999999999999642100000                             001133333333334444


Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh---hH---HHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCC
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ---TF---DSIGRWLNELHTHSDMNVV-TILVGNKSDLKDA  134 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~  134 (223)
                      ...+.||||||+..|...+...+..+|++|+|+|++++.   ++   ......+..+...   ++| +|+|+||+|+...
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~  330 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccccc
Confidence            578899999999999988888899999999999998632   11   0011111222222   454 8999999998753


Q ss_pred             cccC----HHHHHHHH-HHcCC-----eEEEEccCCCCCHH
Q 027417          135 REVT----TAEGKALA-EAQGL-----FFMETSALDSSNVT  165 (223)
Q Consensus       135 ~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~  165 (223)
                      ....    .++...+. ...++     +++++||++|.|+.
T Consensus       331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            2211    22333444 33444     69999999999998

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.76  E-value=4.5e-18  Score=141.03  Aligned_cols=159  Identities=17%  Similarity=0.154  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----hhchhH---hhhcCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FRAVTS---AYYRGA   87 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~---~~~~~~   87 (223)
                      ..|+|+|++|||||||+++|.+........+.++.......+..++ ...+.+||+||...    +..+..   ..+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            3589999999999999999988643222222222233333444443 24678999999632    212222   234579


Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  165 (223)
                      +.+++++|++ ...+..+..|.+++..+..  ...|.++|+||+|+...  ...++........+.+++.+||+++.|++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9999999998 5567777777766654421  25789999999998753  22344445555567889999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027417          166 AAFQTVVTEIYN  177 (223)
Q Consensus       166 ~~~~~l~~~~~~  177 (223)
                      +++++|.+.+.+
T Consensus       314 eL~~~i~~~l~~  325 (416)
T 1udx_A          314 ALKEALHALVRS  325 (416)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999987754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.76  E-value=4.4e-18  Score=149.28  Aligned_cols=117  Identities=15%  Similarity=0.113  Sum_probs=81.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------Cc---cceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-------------KS---TIGVEFQTQKMDINGKEVKAQIWDTAGQER   75 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   75 (223)
                      +...+|+|+|+.|+|||||+++|++.......             .+   ..+.++......+....+.+++|||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            45689999999999999999999853221100             00   012222222222222346788999999999


Q ss_pred             hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                      +......+++.+|++++|+|+++....... .++..+..   .+.|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecCCchh
Confidence            988899999999999999998876443333 33344433   268999999999986

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.75  E-value=2.4e-19  Score=143.39  Aligned_cols=161  Identities=16%  Similarity=0.248  Sum_probs=85.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcC-CCCCCCC--------ccceeEeEEEEEEECCEEEEEEEEeCCCc-------h
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARD-EFYPNSK--------STIGVEFQTQKMDINGKEVKAQIWDTAGQ-------E   74 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------~   74 (223)
                      ....++|+|+|++|||||||+++|.+. .++....        ++.+...........+....+++||++|.       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            455699999999999999999998875 3332221        11111111111122334567899999997       4


Q ss_pred             hhhchhH-------hhhc-------------CCCEEEEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           75 RFRAVTS-------AYYR-------------GAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        75 ~~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      .+..+..       .++.             .+++++++.+.+. .+++.+. .++..+   . .+.++++|+||.|+..
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~-~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---H-NKVNIVPVIAKADTLT  169 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---T-TTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---H-hcCCEEEEEEeCCCCC
Confidence            4444443       3332             2334455544332 1233332 233332   2 3579999999999876


Q ss_pred             Cccc--CHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417          134 AREV--TTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       134 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  177 (223)
                      .+++  ..+++.+++..+++++|++||+++ |++++|..+.+.+.+
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            4333  346778888999999999999999 999999999887743

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.75  E-value=6.9e-18  Score=148.57  Aligned_cols=117  Identities=21%  Similarity=0.173  Sum_probs=84.5

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcC--CC------CC------------CCCccceeEeEEEEEEECCEEEEEEEE
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARD--EF------YP------------NSKSTIGVEFQTQKMDINGKEVKAQIW   68 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~--~~------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~   68 (223)
                      ...+..++|+|+|++|+|||||+++|+..  .+      ..            ....|.  ......+...  .+.+.||
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi--~~~~~~~~~~--~~~i~li   82 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI--TAAVTTCFWK--DHRINII   82 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEET--TEEEEEE
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccc--ccceEEEEEC--CeEEEEE
Confidence            34567799999999999999999999842  11      00            011111  1112222233  3678899


Q ss_pred             eCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        69 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      ||||+..+...+..+++.+|++|+|+|+++..+......|.... .   .+.|+++++||+|+..
T Consensus        83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~-~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE-K---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-H---TTCCEEEEEECTTSTT
T ss_pred             ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH-H---cCCCEEEEEECCCccc
Confidence            99999999889999999999999999999987777776665432 2   2689999999999865

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.74  E-value=1.1e-17  Score=134.48  Aligned_cols=162  Identities=16%  Similarity=0.179  Sum_probs=96.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-cccee----EeEEE-------------------------------
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGV----EFQTQ-------------------------------   54 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~----~~~~~-------------------------------   54 (223)
                      ....++|+|+|.+|||||||+++|++..+.+... ..+..    .....                               
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            3456899999999999999999999977632211 00000    00000                               


Q ss_pred             ---------------------EEE-ECCEEEEEEEEeCCCchh-------------hhchhHhhhcCCCEEEEEEECCCH
Q 027417           55 ---------------------KMD-INGKEVKAQIWDTAGQER-------------FRAVTSAYYRGAVGALLVYDISRR   99 (223)
Q Consensus        55 ---------------------~~~-~~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~   99 (223)
                                           .+. .......+.||||||...             +......++..+|++|+|+|..+.
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~  180 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT  180 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence                                 000 011124688999999643             445666788999999999997443


Q ss_pred             h-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC---C---CCCHHHHHHHHH
Q 027417          100 Q-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL---D---SSNVTAAFQTVV  172 (223)
Q Consensus       100 ~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~l~  172 (223)
                      . .......+...+   ...+.|+++|+||+|+........+.........+..++++++.   +   +.|+.++++.+.
T Consensus       181 ~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~  257 (315)
T 1jwy_B          181 DLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI  257 (315)
T ss_dssp             CSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred             chhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence            2 111111223333   23478999999999997644322222221111122567777655   3   788899988876


Q ss_pred             HHH
Q 027417          173 TEI  175 (223)
Q Consensus       173 ~~~  175 (223)
                      ..+
T Consensus       258 ~~~  260 (315)
T 1jwy_B          258 LYF  260 (315)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.74  E-value=1.9e-17  Score=141.48  Aligned_cols=118  Identities=15%  Similarity=0.129  Sum_probs=78.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--------------------CccceeEeEEEEEEECCEEEEEEEEeCC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNS--------------------KSTIGVEFQTQKMDINGKEVKAQIWDTA   71 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~   71 (223)
                      ...++|+|+|++|+|||||+++|+........                    ....|.+.......+....+.+.|||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            45689999999999999999999863111000                    0011222111112222234678899999


Q ss_pred             CchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        72 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      |+..+......+++.+|++|+|+|+++...... ..++..+.   ..+.|+++++||+|+..
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            999998888889999999999999988543222 22222222   23689999999999865

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.74  E-value=7.8e-18  Score=132.75  Aligned_cols=125  Identities=11%  Similarity=0.084  Sum_probs=81.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhH-------hh-
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTS-------AY-   83 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~-------~~-   83 (223)
                      ...++|+++|.+|+|||||+++|++..+..... ..+.+.......+....+.+.+|||||...+.....       .+ 
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            457999999999999999999999877532221 112222222222222346788999999866543222       11 


Q ss_pred             -hcCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCC--CcEEEEEeCCCCCCCcccC
Q 027417           84 -YRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMN--VVTILVGNKSDLKDAREVT  138 (223)
Q Consensus        84 -~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~~~~  138 (223)
                       .+.+|++|+|+|++.. ++... ..|+..+.......  .|+++|+||+|+...+...
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~  173 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  173 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence             2469999999999763 34333 46776665443222  6999999999987544333

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.73  E-value=4.6e-18  Score=141.02  Aligned_cols=159  Identities=18%  Similarity=0.244  Sum_probs=84.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CC-------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhh-----
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP-NS-------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-----   77 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-----   77 (223)
                      ....++|+|+|++|||||||++.|++..+.. ..       .++.+...........+....+++||++|.....     
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence            4556899999999999999999999876532 11       1121211111111223334578999999965431     


Q ss_pred             --ch------------------hHhhhcCCCEEEEEEECCCH-hhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           78 --AV------------------TSAYYRGAVGALLVYDISRR-QTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        78 --~~------------------~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                        .+                  ...++..+++.+++|+.... .+++.+. .|+..+.    .+.|+|+|+||+|+...+
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~  183 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE  183 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence              11                  11233455554555555443 3454443 5766664    268999999999998655


Q ss_pred             ccCH--HHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417          136 EVTT--AEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus       136 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      ++..  +++...+...+++++++|++++.++.++|..+..
T Consensus       184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  223 (418)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred             HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence            5544  6677788888999999999999999988877654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.72  E-value=2.6e-18  Score=137.46  Aligned_cols=134  Identities=19%  Similarity=0.168  Sum_probs=109.1

Q ss_pred             HHHHHHhcCCCC-CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHh-hHHHHH
Q 027417           29 NLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ-TFDSIG  106 (223)
Q Consensus        29 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  106 (223)
                      +|+.+++.+.+. ..+.+|+|..+. ..+..++   .+.+||+  ++++..++..+++++|++|+|||++++. +++.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            678888888887 788899885543 2222222   6789999  7899999999999999999999999997 789999


Q ss_pred             HHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEEccCCCCCHHHHHHHHHH
Q 027417          107 RWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--LFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus       107 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      .|+..+..   .++|+++|+||+|+.+.+.+  +++.+++..++  ++++++||++|.|++++|..+..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            99988765   36899999999999764332  45677777777  89999999999999999988754

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.72  E-value=2.3e-16  Score=139.06  Aligned_cols=120  Identities=18%  Similarity=0.107  Sum_probs=83.9

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------CCCc---cceeEeEEE--EEEEC-----CEEEEEE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARD--EFYP-----------NSKS---TIGVEFQTQ--KMDIN-----GKEVKAQ   66 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~--~~~~-----------~~~~---~~~~~~~~~--~~~~~-----~~~~~~~   66 (223)
                      ..+..++|+|+|+.|+|||||+++|+..  .+..           .+.+   ..+.+....  .+.+.     +..+.++
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            3456789999999999999999999752  1110           0000   112222221  22222     2347899


Q ss_pred             EEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           67 IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        67 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      ||||||+..|...+..+++.+|++|+|+|+++.........|... .   ..+.|+++++||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~-~---~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA-N---KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH-H---HcCCCEEEEEeCCCccc
Confidence            999999999988899999999999999999987666555555332 2   22689999999999864

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.70  E-value=7.2e-18  Score=139.42  Aligned_cols=85  Identities=19%  Similarity=0.192  Sum_probs=47.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEE--E-------------------EECC-EEEEEEEEeCCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQK--M-------------------DING-KEVKAQIWDTAG   72 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~l~D~~G   72 (223)
                      ++|+|+|.+|||||||+++|++........+.++.+.....  +                   .+++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987632222222222211111  1                   1122 257899999999


Q ss_pred             chh----hhchhH---hhhcCCCEEEEEEECCCH
Q 027417           73 QER----FRAVTS---AYYRGAVGALLVYDISRR   99 (223)
Q Consensus        73 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   99 (223)
                      ...    ...+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    222222   346899999999999875

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.70  E-value=8.6e-17  Score=141.68  Aligned_cols=117  Identities=18%  Similarity=0.155  Sum_probs=83.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhc--CCCCC-----------CC-----CccceeEeEEEEEEECCEEEEEEEEeCCC
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFAR--DEFYP-----------NS-----KSTIGVEFQTQKMDINGKEVKAQIWDTAG   72 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~--~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G   72 (223)
                      .+...+|+|+|++|+|||||+++|+.  +.+..           .+     ...++.......+...  .+.+.||||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence            35678999999999999999999985  22210           00     0000111111223333  36788999999


Q ss_pred             chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      +..+...+..+++.+|++|+|+|+++..+......|.. +...   +.|+++|+||+|+..
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence            99998888999999999999999999777776666644 3322   689999999999865

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.66  E-value=6e-18  Score=138.29  Aligned_cols=159  Identities=17%  Similarity=0.171  Sum_probs=93.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------ccc--------------------------------------
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK------STI--------------------------------------   47 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~------~~~--------------------------------------   47 (223)
                      ...++|+|+|.+|||||||+++|++..+.+...      ++.                                      
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            446899999999999999999999987642211      210                                      


Q ss_pred             -----eeEeEEEEEEEC-CEEEEEEEEeCCCch-------------hhhchhHhhhcCCC-EEEEEEECCCHhhHHHHHH
Q 027417           48 -----GVEFQTQKMDIN-GKEVKAQIWDTAGQE-------------RFRAVTSAYYRGAV-GALLVYDISRRQTFDSIGR  107 (223)
Q Consensus        48 -----~~~~~~~~~~~~-~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~  107 (223)
                           |+......+.+. .....+.||||||..             .+..+...++..++ ++++++|.+....-.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                 000000001110 113568899999953             33445566666555 5555666654322122222


Q ss_pred             HHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH--HHHHcC-CeEEEEccCCCCCHHHHHHHHHH
Q 027417          108 WLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA--LAEAQG-LFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus       108 ~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      ++..   ....+.|+++|+||+|+.+......+....  +....+ .+++.+||+++.|++++++++..
T Consensus       189 i~~~---~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKE---VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHH---HCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHH---hCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3333   334478999999999997543311211110  001122 24678999999999999988865

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.65  E-value=1e-16  Score=122.39  Aligned_cols=155  Identities=12%  Similarity=0.072  Sum_probs=94.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEe--------------EEEEEEE----------------CCEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEF--------------QTQKMDI----------------NGKE   62 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~   62 (223)
                      ...+|+|+|.+|||||||+++|.+.............+.              ....+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            457999999999999999999986522111000000000              0011111                0112


Q ss_pred             EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEG  142 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  142 (223)
                      +.+.+|||+|....   ...+....+.+|+|+|+.+....  ...+....      +.|+++|+||+|+........++.
T Consensus       109 ~d~iiidt~G~~~~---~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLIC---PVDFDLGENYRVVMVSVTEGDDV--VEKHPEIF------RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSG---GGGCCCSCSEEEEEEEGGGCTTH--HHHCHHHH------HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCC---CchhccccCcEEEEEeCCCcchh--hhhhhhhh------hcCCEEEEecccCCcchhhHHHHH
Confidence            46779999884110   11111357889999998775321  11111111      478899999999864333456666


Q ss_pred             HHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027417          143 KALAEAQ--GLFFMETSALDSSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       143 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  178 (223)
                      ...+...  +++++++||++|.|+++++++|.+.+.+.
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            6665554  47899999999999999999998776443

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.65  E-value=4.5e-15  Score=120.64  Aligned_cols=145  Identities=17%  Similarity=0.106  Sum_probs=89.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCE---------------EEEEEEEeCCCchhhh--
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQERFR--   77 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~--   77 (223)
                      ++|+|+|.+|||||||+++|++........+..+.......+.+++.               ...+.+|||||...+.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999987643322222222222223334432               2578899999976542  


Q ss_pred             -----chhHhhhcCCCEEEEEEECCCH----------hhHHHHHHHHHH-------------------------------
Q 027417           78 -----AVTSAYYRGAVGALLVYDISRR----------QTFDSIGRWLNE-------------------------------  111 (223)
Q Consensus        78 -----~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~-------------------------------  111 (223)
                           ......++.+|++++|+|+++.          +.++.+..+..+                               
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence                 2233457899999999999862          122222111111                               


Q ss_pred             ---------Hh-------------------hc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027417          112 ---------LH-------------------TH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL  159 (223)
Q Consensus       112 ---------i~-------------------~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (223)
                               +.                   .+ ....+|+++++|+.|..-......+..+.++...+++++++||+
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                     11                   01 12249999999999964211223566777888889999999965

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.63  E-value=3.2e-16  Score=128.07  Aligned_cols=103  Identities=17%  Similarity=0.155  Sum_probs=69.5

Q ss_pred             EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEG  142 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  142 (223)
                      +.+.||||||...   .....+..+|++|+|+|....+.+..+..        .-.+.|+++|+||+|+....... ...
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~-~~~  239 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEAR-LAA  239 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHH-HHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHH-HHH
Confidence            5688999999533   23344588999999999876544322211        11246899999999986432211 111


Q ss_pred             HHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417          143 KALAEA----------QGLFFMETSALDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       143 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  177 (223)
                      .++...          ++.+++++||++|.|+++++++|.+.+..
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            122221          25789999999999999999999887754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.62  E-value=4.9e-18  Score=130.17  Aligned_cols=153  Identities=14%  Similarity=0.133  Sum_probs=89.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeE------------EEEEEEC-CE------------------
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQ------------TQKMDIN-GK------------------   61 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   61 (223)
                      ..++|+|+|.+|||||||+++|+...+...+.++.+.++.            ...+.++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999976554433333333321            1111111 10                  


Q ss_pred             -EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH
Q 027417           62 -EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTA  140 (223)
Q Consensus        62 -~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  140 (223)
                       ...+.++|++|.-..   ...+-...+..+.++|.........  .+...+      ..|.++|+||+|+.+......+
T Consensus       117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGIM------KTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH------TTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhHh------hcCCEEEEeccccCchhHHHHH
Confidence             012345555442000   0011112344455666432111000  000111      3678999999998754345667


Q ss_pred             HHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417          141 EGKALAEAQ--GLFFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       141 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      +...++...  +++++++||++|.|++++|+.|.+.+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            777776654  578999999999999999999987664

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.62  E-value=1.3e-14  Score=124.62  Aligned_cols=117  Identities=15%  Similarity=0.095  Sum_probs=82.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCC------------------CC----CCCCccceeEeEEEEEEECCEEEEEEEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDE------------------FY----PNSKSTIGVEFQTQKMDINGKEVKAQIW   68 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~   68 (223)
                      .....||+|+|+.++|||||..+|+...                  ..    .+....+++......+.+.  .+.++|+
T Consensus        28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlI  105 (548)
T 3vqt_A           28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR--DRVVNLL  105 (548)
T ss_dssp             HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET--TEEEEEE
T ss_pred             ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC--CEEEEEE
Confidence            3457899999999999999999996310                  00    0001111111112223334  4778899


Q ss_pred             eCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        69 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      ||||+..|..-....++-+|++|+|+|+...-.-+...-|......    ++|+++++||+|...
T Consensus       106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~----~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR----ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT----TCCEEEEEECTTSCC
T ss_pred             eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh----CCceEEEEecccchh
Confidence            9999999999999999999999999999986555555556444332    699999999999864

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.60  E-value=9.4e-16  Score=137.63  Aligned_cols=119  Identities=19%  Similarity=0.167  Sum_probs=87.8

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CCCccceeEeEEEEEE------------EC
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYP------------------NSKSTIGVEFQTQKMD------------IN   59 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~------------~~   59 (223)
                      .....++|+|+|++++|||||+++|++.....                  ....|+........+.            .+
T Consensus        15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~   94 (842)
T 1n0u_A           15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   94 (842)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence            34567899999999999999999998641100                  0001211112222222            23


Q ss_pred             CEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        60 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                      +..+.++||||||+..|...+..+++.+|++|+|+|++++.+++....|.....    .+.|+++++||+|+.
T Consensus        95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            447889999999999999999999999999999999999888887766655433    268999999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.58  E-value=5.7e-15  Score=120.66  Aligned_cols=156  Identities=15%  Similarity=0.092  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC-------------------EEEEEEEEeCCCchh
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-------------------KEVKAQIWDTAGQER   75 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~G~~~   75 (223)
                      ++|+|+|.+|||||||+++|++........+..+.........+++                   ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6799999999999999999997643222222111111122222321                   235788999999765


Q ss_pred             hh-------chhHhhhcCCCEEEEEEECCCH----------hhHHHHHHHHHH---------------------------
Q 027417           76 FR-------AVTSAYYRGAVGALLVYDISRR----------QTFDSIGRWLNE---------------------------  111 (223)
Q Consensus        76 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~---------------------------  111 (223)
                      ..       ......++.+|++++|+|+++.          +.+..+..+..+                           
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            32       2233457899999999999851          111111110000                           


Q ss_pred             ------------Hhh-------------------c-CCCCCcEEEEEeCCCCC--CC-cccCHHHHHHHHHHcCCeEEEE
Q 027417          112 ------------LHT-------------------H-SDMNVVTILVGNKSDLK--DA-REVTTAEGKALAEAQGLFFMET  156 (223)
Q Consensus       112 ------------i~~-------------------~-~~~~~p~ivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~~  156 (223)
                                  +..                   + .-..+|+++++|+.|..  +. +....+..+.+++..+++++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                        000                   0 01137999999999842  22 1234566778888889999999


Q ss_pred             ccCCCCCHHHHHHH
Q 027417          157 SALDSSNVTAAFQT  170 (223)
Q Consensus       157 Sa~~~~~i~~~~~~  170 (223)
                      ||+...++.++.+.
T Consensus       242 SAk~E~el~eL~~~  255 (368)
T 2dby_A          242 SARLEAELAELSGE  255 (368)
T ss_dssp             CHHHHHHHHTSCHH
T ss_pred             echhHHHHHHhchH
Confidence            99987777666554

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.58  E-value=1.8e-15  Score=129.93  Aligned_cols=119  Identities=20%  Similarity=0.204  Sum_probs=82.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCccceeEeEEEEEEEC------CE----------------E---
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFY---PNSKSTIGVEFQTQKMDIN------GK----------------E---   62 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~------~~----------------~---   62 (223)
                      ....++|+|+|.+|+|||||+|+|++..+.   ....+++..  ......-.      +.                +   
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~--~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~  139 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC--FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF  139 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS--EEEEECCSSSEEECCC------------------CC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce--EEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence            456799999999999999999999998763   222333211  11000000      00                0   


Q ss_pred             --------------EEEEEEeCCCchh-----------hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCC
Q 027417           63 --------------VKAQIWDTAGQER-----------FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD  117 (223)
Q Consensus        63 --------------~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  117 (223)
                                    ..+.||||||...           +......++..+|++|+|+|+++....+....|+..+..   
T Consensus       140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---  216 (550)
T 2qpt_A          140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---  216 (550)
T ss_dssp             CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---
T ss_pred             cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---
Confidence                          2578999999764           445666778899999999999886555556666666543   


Q ss_pred             CCCcEEEEEeCCCCCCC
Q 027417          118 MNVVTILVGNKSDLKDA  134 (223)
Q Consensus       118 ~~~p~ivv~nK~Dl~~~  134 (223)
                      .+.|+++|+||+|+...
T Consensus       217 ~~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          217 HEDKIRVVLNKADMVET  233 (550)
T ss_dssp             CGGGEEEEEECGGGSCH
T ss_pred             cCCCEEEEEECCCccCH
Confidence            35899999999998754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.56  E-value=8.3e-14  Score=113.82  Aligned_cols=155  Identities=15%  Similarity=0.104  Sum_probs=102.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYY   84 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~   84 (223)
                      ....+|+|+|.|+||||||+|+|++........+.++.+.....+.+.+  ..++++||||...       ........+
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            3457999999999999999999998766555556666677777777777  4577999999532       112233456


Q ss_pred             cCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC--------CcccCHHHHHHHHHHcCCeEEE
Q 027417           85 RGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKD--------AREVTTAEGKALAEAQGLFFME  155 (223)
Q Consensus        85 ~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~  155 (223)
                      +.+|++++|+|++++.. .+.+...+..+..... +.|.+++.||.|...        ......++.+.+...+.+.--+
T Consensus       148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~-~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp  226 (376)
T 4a9a_A          148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLN-KTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE  226 (376)
T ss_dssp             HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEET-CCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred             HhcCccccccccCccHHHHHHHHHHHHHhhHhhc-cCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence            88999999999999743 3334444444332222 577888999999642        1335567777766665543222


Q ss_pred             EccCCCCCHHHHHH
Q 027417          156 TSALDSSNVTAAFQ  169 (223)
Q Consensus       156 ~Sa~~~~~i~~~~~  169 (223)
                      +--..+...+++.+
T Consensus       227 v~~~~nv~eddl~d  240 (376)
T 4a9a_A          227 IAFRCDATVDDLID  240 (376)
T ss_dssp             EEECSCCCHHHHHH
T ss_pred             eeecccCCHHHHHH
Confidence            22334445555544

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.55  E-value=2.8e-15  Score=122.12  Aligned_cols=103  Identities=11%  Similarity=0.009  Sum_probs=62.6

Q ss_pred             EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEG  142 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  142 (223)
                      +.+.++||+|....   .......+|++++|+|++++...+.+..   .+     ...|.++|+||+|+...... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence            46789999996322   2344678999999999987643322211   11     14688999999998632111 0111


Q ss_pred             HHHHH----------HcCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417          143 KALAE----------AQGLFFMETSALDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       143 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  177 (223)
                      ..+..          .+..+++.+||+++.|+++++++|.+.+..
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            12211          124578999999999999999999876643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.51  E-value=7.1e-15  Score=119.48  Aligned_cols=103  Identities=16%  Similarity=0.117  Sum_probs=65.3

Q ss_pred             EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--H
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT--A  140 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~  140 (223)
                      +.+.||||||......   .....+|++++|+|.+....+..+...   .     .+.|.++|+||+|+........  +
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            5688999999654332   245899999999999765432211110   0     1367899999999875322111  1


Q ss_pred             HHHHHHHHc-------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417          141 EGKALAEAQ-------GLFFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       141 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      +.+......       ..+++++||++|.|++++++.|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            222222222       356899999999999999999988765

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.51  E-value=4.6e-15  Score=129.66  Aligned_cols=116  Identities=18%  Similarity=0.185  Sum_probs=81.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC--CCCC------C---CC-----ccceeEeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD--EFYP------N---SK-----STIGVEFQTQKMDINGKEVKAQIWDTAGQERFR   77 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~--~~~~------~---~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   77 (223)
                      ..||+|+|+.++|||||..+|+..  ....      .   .+     ..-|.+.......+....+.++|+|||||..|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            468999999999999999998631  1110      0   00     000223333333334455778899999999999


Q ss_pred             chhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           78 AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      .-....++-+|++|+|+|+...-.-+...-|......    ++|.++++||+|...
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~----~lp~i~~INKmDr~~  133 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM----GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH----TCSCEECCEECCSSS
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc----CCCeEEEEecccccc
Confidence            9999999999999999999986444444445443333    688999999999754

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.50  E-value=6.2e-13  Score=117.61  Aligned_cols=119  Identities=17%  Similarity=0.138  Sum_probs=82.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCCC--------CccceeEeE--EEEEEEC-----CEEEEEEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARD--------EFYPNS--------KSTIGVEFQ--TQKMDIN-----GKEVKAQI   67 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~--------~~~~~~--------~~~~~~~~~--~~~~~~~-----~~~~~~~l   67 (223)
                      -+...||+|+|+.++|||||..+|+..        ......        ..--|.+..  ...+.+.     ...+.++|
T Consensus        10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl   89 (709)
T 4fn5_A           10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV   89 (709)
T ss_dssp             GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred             hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence            356789999999999999999998631        111000        000122222  2222222     13578999


Q ss_pred             EeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           68 WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        68 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      +|||||-.|..-....++-+|++|+|+|+...-.-+...-|......    ++|.++++||+|...
T Consensus        90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred             EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence            99999999999999999999999999999986555555555554443    689999999999753

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.49  E-value=7.4e-14  Score=122.87  Aligned_cols=158  Identities=16%  Similarity=0.158  Sum_probs=96.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CccceeEe---------------------------------------
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-KSTIGVEF---------------------------------------   51 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~---------------------------------------   51 (223)
                      -..++|+|+|.+++|||||+|+|++..+.+.. ..++....                                       
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            45689999999999999999999997763221 11111000                                       


Q ss_pred             -----------EEEEEEECCEEEEEEEEeCCCchh-------------hhchhHhhh-cCCCEEEEEEECCCHhhHHHHH
Q 027417           52 -----------QTQKMDINGKEVKAQIWDTAGQER-------------FRAVTSAYY-RGAVGALLVYDISRRQTFDSIG  106 (223)
Q Consensus        52 -----------~~~~~~~~~~~~~~~l~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  106 (223)
                                 ....+... ....+.|+||||...             .......++ ..+|++++|+|+++...-....
T Consensus       129 ~g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                       00111111 112477999999533             222333344 5789999999998753322222


Q ss_pred             HHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-H-HHHcC-CeEEEEccCCCCCHHHHHHHHHH
Q 027417          107 RWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA-L-AEAQG-LFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus       107 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      .++..+.   ..+.|+++|+||+|+............. . ....+ .+++.+||++|.|++++++.+..
T Consensus       208 ~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          208 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             HHHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             HHHHHHH---hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            3333333   3478999999999998643332211110 0 00012 24677999999999999988875

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.47  E-value=2.7e-13  Score=105.99  Aligned_cols=108  Identities=13%  Similarity=-0.016  Sum_probs=66.6

Q ss_pred             EEEEEEeCCCchhhhchhH------hhhcCCCEEEEEEECCCH---hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           63 VKAQIWDTAGQERFRAVTS------AYYRGAVGALLVYDISRR---QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      +.+.||||||.........      ..+.. +++|+++|....   ..+.....+....  ....+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI--DLRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH--HHHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH--hcccCCCeEEEEecccccc
Confidence            4788999999776543221      23455 888888887542   2222222111111  1112589999999999875


Q ss_pred             CcccCHHHHHHH----------------------------HHHcC--CeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          134 AREVTTAEGKAL----------------------------AEAQG--LFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       134 ~~~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ..+.  ++..++                            +...+  ++++++||+++.|+++++++|.+.+
T Consensus       186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~  255 (262)
T 1yrb_A          186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  255 (262)
T ss_dssp             HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence            3221  111111                            23333  4799999999999999999998665

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.42  E-value=2.8e-13  Score=109.82  Aligned_cols=104  Identities=13%  Similarity=0.086  Sum_probs=64.1

Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAE  141 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  141 (223)
                      .+.+.|+||+|.....   ......+|++++++|....+..+.+..+.   .     ..+.++++||+|+......+...
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHH
Confidence            3567899999964322   23457899999999987543322111111   1     24567778999975432222222


Q ss_pred             HHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417          142 GKALAEA----------QGLFFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       142 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      .+.+...          +..+++.+||+++.|++++++.|.+.+.
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3333221          1356899999999999999999987653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.42  E-value=3.6e-13  Score=107.57  Aligned_cols=97  Identities=14%  Similarity=0.109  Sum_probs=80.0

Q ss_pred             chhhhchhHhhhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHcC
Q 027417           73 QERFRAVTSAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT-TAEGKALAEAQG  150 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~  150 (223)
                      ++++..+...++.++|++|+|+|++++. +++.+..|+..+..   .++|+++|+||+|+.+..++. .++...++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            4667777778899999999999999986 89989999987654   368999999999997543222 345566677788


Q ss_pred             CeEEEEccCCCCCHHHHHHHHH
Q 027417          151 LFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus       151 ~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      .+++++||+++.|++++++.+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHhhcc
Confidence            9999999999999999998874

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.31  E-value=4e-11  Score=98.59  Aligned_cols=87  Identities=15%  Similarity=0.202  Sum_probs=62.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCccceeEeEEEEEEECCE---------------EEEEEEEeCCCchh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQER   75 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~   75 (223)
                      ....+|+|+|++|||||||+++|++... .....|+++.+.....+.+.+.               ...+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4457999999999999999999999765 4444444444444555555541               13578999999432


Q ss_pred             -------hhchhHhhhcCCCEEEEEEECCC
Q 027417           76 -------FRAVTSAYYRGAVGALLVYDISR   98 (223)
Q Consensus        76 -------~~~~~~~~~~~~d~~i~v~d~~~   98 (223)
                             ........++.+|++++|+|..+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   23345566789999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.31  E-value=1.9e-12  Score=106.20  Aligned_cols=90  Identities=11%  Similarity=0.112  Sum_probs=53.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCE---------------EEEEEEEeCCCchhh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQERF   76 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~   76 (223)
                      ...++|+|+|.+|||||||+++|++..+.....++++.+.....+.+++.               ...+.+|||||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            45689999999999999999999987664444444444444445554432               235889999997654


Q ss_pred             hc-------hhHhhhcCCCEEEEEEECCCHhh
Q 027417           77 RA-------VTSAYYRGAVGALLVYDISRRQT  101 (223)
Q Consensus        77 ~~-------~~~~~~~~~d~~i~v~d~~~~~s  101 (223)
                      ..       .+..+++.+|++++|+|+.+..+
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            32       45677899999999999986433

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.16  E-value=2.2e-11  Score=90.71  Aligned_cols=103  Identities=6%  Similarity=-0.019  Sum_probs=67.7

Q ss_pred             CCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHH----hhcC-CCCCcEEEEEeCC-CCCCCcccCHHHHH
Q 027417           70 TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNEL----HTHS-DMNVVTILVGNKS-DLKDAREVTTAEGK  143 (223)
Q Consensus        70 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i----~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~  143 (223)
                      .+|++..+.+|.+|+.++|++|||+|.++.+-++ ....+..+    .... -.+.|++|++||. |+..  .++..+..
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence            3478889999999999999999999999875444 33333222    2221 2478999999995 6753  34555544


Q ss_pred             HHHH----HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          144 ALAE----AQGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       144 ~~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      +...    ...+.++.|||++|+|+.+.++||...+
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence            4322    1245589999999999999999998655

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.00  E-value=4.3e-10  Score=87.80  Aligned_cols=104  Identities=5%  Similarity=-0.012  Sum_probs=72.0

Q ss_pred             CCCchhhhchhHhhhcCCCEEEEEEECCCHhhHH---HHHHHHHHHhhc-CCCCCcEEEEEeC-CCCCCCcccCHHHHHH
Q 027417           70 TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFD---SIGRWLNELHTH-SDMNVVTILVGNK-SDLKDAREVTTAEGKA  144 (223)
Q Consensus        70 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~-~~~~~p~ivv~nK-~Dl~~~~~~~~~~~~~  144 (223)
                      .+|++..+..|.+|+.++|++|+|+|.++.+.++   ++......+... .-.+.|++|.+|| -|+..  .++..++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence            4678889999999999999999999999976544   222222223222 1237899999996 57764  345555443


Q ss_pred             HHH----HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          145 LAE----AQGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       145 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ...    ...+.+..|||.+|+|+.+.++||...+
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l  306 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV  306 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence            322    1234589999999999999999998765

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.97  E-value=2.6e-09  Score=87.46  Aligned_cols=95  Identities=24%  Similarity=0.290  Sum_probs=73.3

Q ss_pred             chhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHHH
Q 027417           73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA----LAEA  148 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~  148 (223)
                      .+.|...+.++.+.++++++|+|++++.     ..|...+..... +.|+++|+||+|+... ....++..+    +++.
T Consensus        56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~  128 (368)
T 3h2y_A           56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQ  128 (368)
T ss_dssp             CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999863     445555555433 6899999999999753 233333333    3566


Q ss_pred             cCC---eEEEEccCCCCCHHHHHHHHHHH
Q 027417          149 QGL---FFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       149 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      .+.   +++.+||++|.|++++++.|.+.
T Consensus       129 ~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          129 LGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             TTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            777   79999999999999999998653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.92  E-value=9.1e-11  Score=96.18  Aligned_cols=140  Identities=14%  Similarity=0.133  Sum_probs=81.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC-----CCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc--------hhH
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD-----EFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTS   81 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~   81 (223)
                      .+|+++|.+|+|||||+|+|++.     .... .....+++.....+.+...   +.++||||......        ...
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~-~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVIT-TSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCE-EEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCcccee-ecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            57999999999999999999975     1111 1111234444444544432   67999999532211        112


Q ss_pred             hhh--cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027417           82 AYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL  159 (223)
Q Consensus        82 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (223)
                      .++  +..+.++++++......+..    +..+......+.|+++++||.|....... ......+.+..+..+.+.++.
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~----l~~l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~  313 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGG----LARLDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKR  313 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETT----TEEEEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGG
T ss_pred             HHhcccccCceEEEEcCCceEEECC----EEEEEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCch
Confidence            222  67899999999843211001    11122223346899999999998753332 222334556667666665555


Q ss_pred             CCCC
Q 027417          160 DSSN  163 (223)
Q Consensus       160 ~~~~  163 (223)
                      +..+
T Consensus       314 ~~~~  317 (369)
T 3ec1_A          314 YAAE  317 (369)
T ss_dssp             GTTT
T ss_pred             hhhh
Confidence            4333

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.91  E-value=5e-10  Score=94.85  Aligned_cols=152  Identities=13%  Similarity=0.080  Sum_probs=85.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHh------cCCCC---C-CCCcc-----------ceeEeEEEEEE-------------
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFA------RDEFY---P-NSKST-----------IGVEFQTQKMD-------------   57 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~------~~~~~---~-~~~~~-----------~~~~~~~~~~~-------------   57 (223)
                      .....|+|+|.+||||||+++.|.      +....   . .+.+.           .+..+......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345789999999999999999998      32211   0 00000           01111110000             


Q ss_pred             ECCEEEEEEEEeCCCchhhhc-hhHh---h--hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcE-EEEEeCCC
Q 027417           58 INGKEVKAQIWDTAGQERFRA-VTSA---Y--YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVT-ILVGNKSD  130 (223)
Q Consensus        58 ~~~~~~~~~l~D~~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~D  130 (223)
                      .....+.+.|+||||...... +...   .  ...+|.+++|+|........   .....+..    ..|+ ++|+||.|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCc
Confidence            000235678999999653211 1111   1  23799999999998754311   11222222    1564 88999999


Q ss_pred             CCCCcccCHHHHHHHHHHcCCeE------------------EEEccCCCCC-HHHHHHHHHHH
Q 027417          131 LKDAREVTTAEGKALAEAQGLFF------------------METSALDSSN-VTAAFQTVVTE  174 (223)
Q Consensus       131 l~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~  174 (223)
                      .....    ..+.......+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       252 ~~~~~----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKG----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCC----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccch----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            76321    11223334555553                  2368889999 99999888754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.85  E-value=8.5e-11  Score=96.27  Aligned_cols=135  Identities=12%  Similarity=0.133  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc----h----hH
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYP-----NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA----V----TS   81 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~----~~   81 (223)
                      .+|+++|.+|+|||||+|+|++.....     ......+++.....+.+...   +.++||||......    +    ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            589999999999999999999753211     11122244444444444433   67999999533221    1    11


Q ss_pred             hh--hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEc
Q 027417           82 AY--YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus        82 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (223)
                      .+  ....+.++++++......+..    +..+......+.|+++++||+|....... ......+.+..+..+++.+
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~----l~~~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSG----LARFDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETT----TEEEEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred             HhccccccCceEEEEcCCCEEEEcc----eEEEEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence            11  256788888888743211001    01122223346899999999998753322 2223344455665544444

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.84  E-value=3.2e-09  Score=83.26  Aligned_cols=137  Identities=18%  Similarity=0.161  Sum_probs=70.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------ccceeEeEEEEEEECC--EEEEEEEEeCCCchhhh-------
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSK-------STIGVEFQTQKMDING--KEVKAQIWDTAGQERFR-------   77 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~l~D~~G~~~~~-------   77 (223)
                      .++++|+|+.|+|||||++.|.+...+....       ...........+....  -...++++|++|.....       
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            4789999999999999999998753322110       0000000111111111  12367899998832100       


Q ss_pred             ch-------hHh--------------hhcCCCEEEEEEECCC-HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           78 AV-------TSA--------------YYRGAVGALLVYDISR-RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        78 ~~-------~~~--------------~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      .+       ...              .+..+++.++++|... +-.-.. ...+..+..    ..++|+|.+|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----~~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----VVNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----cCcEEEEEeccccCCHH
Confidence            00       000              1124688888888652 211111 223333332    28899999999987533


Q ss_pred             cc--CHHHHHHHHHHcCCeEEE
Q 027417          136 EV--TTAEGKALAEAQGLFFME  155 (223)
Q Consensus       136 ~~--~~~~~~~~~~~~~~~~~~  155 (223)
                      +.  .....+......++.+|+
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            22  122333445566777654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.84  E-value=8.7e-09  Score=85.33  Aligned_cols=116  Identities=20%  Similarity=0.246  Sum_probs=59.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc--cceeEeEEEEEEE--CCEEEEEEEEeCCCchhh-------------
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKS--TIGVEFQTQKMDI--NGKEVKAQIWDTAGQERF-------------   76 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~-------------   76 (223)
                      .++++|+|++|+|||||++.|.+..+......  ..+.......+.+  .+....++++|++|....             
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            46799999999999999999998643221110  1122222222222  222346789999874321             


Q ss_pred             -hchhHhhh-------------cC--CCE-EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417           77 -RAVTSAYY-------------RG--AVG-ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA  134 (223)
Q Consensus        77 -~~~~~~~~-------------~~--~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  134 (223)
                       ...+..++             ..  +|+ ++++.|...+-+-.. ..++..+   . .+.|+|+|.||+|....
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L---~-~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKL---D-SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHT---C-SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHH---h-hCCCEEEEEcchhccch
Confidence             01111111             11  233 555666554332222 1222222   2 47899999999997653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.81  E-value=9.3e-08  Score=79.11  Aligned_cols=154  Identities=12%  Similarity=0.149  Sum_probs=81.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeE-EEEEEECCEEEEEEEEeCCCchhhhchhHh-----hhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQ-TQKMDINGKEVKAQIWDTAGQERFRAVTSA-----YYRG   86 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~-----~~~~   86 (223)
                      ...|+|+|++|||||||++.|.+...+..-. ...+.... ...+.-......+++||++|..........     .+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            3479999999999999999999843322111 11111110 011111111124679999985322111111     2234


Q ss_pred             CCEEEEEEECCC--HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC-------CCcccCHHH----HHHHH----HHc
Q 027417           87 AVGALLVYDISR--RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK-------DAREVTTAE----GKALA----EAQ  149 (223)
Q Consensus        87 ~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~----~~~~~----~~~  149 (223)
                      .+.+++ ++...  .....    ....+..   .+.|+++|.||.|+.       .-+....++    .+++.    ...
T Consensus       149 ~~~~~~-lS~G~~~kqrv~----la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~  220 (413)
T 1tq4_A          149 YDFFII-ISATRFKKNDID----IAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  220 (413)
T ss_dssp             CSEEEE-EESSCCCHHHHH----HHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCeEE-eCCCCccHHHHH----HHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            455555 77762  22111    1222222   258999999999963       111222332    23332    122


Q ss_pred             C---CeEEEEcc--CCCCCHHHHHHHHHHHH
Q 027417          150 G---LFFMETSA--LDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       150 ~---~~~~~~Sa--~~~~~i~~~~~~l~~~~  175 (223)
                      +   ..++.+|+  .++.|++++.+.+...+
T Consensus       221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             CCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence            2   24788999  56667999998887655

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.79  E-value=1e-08  Score=83.98  Aligned_cols=96  Identities=19%  Similarity=0.180  Sum_probs=71.1

Q ss_pred             CchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHH
Q 027417           72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA----LAE  147 (223)
Q Consensus        72 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~  147 (223)
                      .++.|.....++++.++++|+|+|++++.+     .|...+..... +.|+++|+||+|+... ....+...+    ++.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence            367899999999999999999999999763     34434433333 6899999999999753 223333333    355


Q ss_pred             HcCC---eEEEEccCCCCCHHHHHHHHHHH
Q 027417          148 AQGL---FFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       148 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      ..+.   .++.+||++|.|++++++.|.+.
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~  159 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRY  159 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence            6676   68999999999999999988654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.72  E-value=2.8e-08  Score=78.36  Aligned_cols=101  Identities=18%  Similarity=0.093  Sum_probs=70.4

Q ss_pred             EEeCCCch-hhhchhHhhhcCCCEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 027417           67 IWDTAGQE-RFRAVTSAYYRGAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK  143 (223)
Q Consensus        67 l~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  143 (223)
                      +-..||+. .........+..+|+++.|+|+.++.+..  .+..|+        .++|+++|+||+|+.+..  ..+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence            44578875 35556667789999999999999987653  344443        368999999999997521  122223


Q ss_pred             HHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417          144 ALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       144 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  177 (223)
                      ++.+..+.+++.+||+++.|+.++++.+.+.+..
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            4445567899999999999999999988766643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.60  E-value=4.1e-08  Score=77.41  Aligned_cols=59  Identities=24%  Similarity=0.388  Sum_probs=36.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE   74 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   74 (223)
                      ...++|+++|.||||||||+|+|.+........ ..+++.....+....   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            456899999999999999999999865432222 223443333333333   46799999954

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.50  E-value=4.2e-08  Score=76.56  Aligned_cols=57  Identities=19%  Similarity=0.302  Sum_probs=35.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER   75 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   75 (223)
                      ++|+++|.+|+|||||+|+|.+..... ..++.|++.....+....   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            699999999999999999999866532 222334443333333332   467999999654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.38  E-value=1.1e-06  Score=73.26  Aligned_cols=86  Identities=16%  Similarity=0.057  Sum_probs=51.9

Q ss_pred             EEEEEEeCCCchhhhc-hhH-----hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           63 VKAQIWDTAGQERFRA-VTS-----AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      +.+.|+||+|...... ...     .....+|.+++|+|.........   ....+...   -.+..+|+||.|...   
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~---  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSA---  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCS---
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCcc---
Confidence            5678999999433211 111     12246899999999987543222   22333322   245678999999763   


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcc
Q 027417          137 VTTAEGKALAEAQGLFFMETSA  158 (223)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~Sa  158 (223)
                       ..-.+..+....+.|+..++.
T Consensus       254 -~gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          254 -KGGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             -SHHHHHHHHHTTCCCEEEEEC
T ss_pred             -cccHHHHHHHHHCCCEEEEEc
Confidence             233455566678888776664

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.22  E-value=5.3e-06  Score=69.13  Aligned_cols=84  Identities=15%  Similarity=0.058  Sum_probs=48.2

Q ss_pred             EEEEEEEeCCCchhhhc-hhH---h--hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCC-c-EEEEEeCCCCCC
Q 027417           62 EVKAQIWDTAGQERFRA-VTS---A--YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV-V-TILVGNKSDLKD  133 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-~ivv~nK~Dl~~  133 (223)
                      .+.+.|+||||...... +..   .  .+..+|.+++|+|......   .......+..    .. | ..+|+||.|...
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE----AVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT----TSCSCEEEEEECSSSCS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh----cccCCeEEEEeCCCCcc
Confidence            35678999999544211 111   1  1236899999999876532   1122222221    24 5 788999999753


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEE
Q 027417          134 AREVTTAEGKALAEAQGLFFMET  156 (223)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~  156 (223)
                      .    ...+..+....+.|+..+
T Consensus       253 ~----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 K----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T----THHHHHHHHHSSCCEEEE
T ss_pred             c----hHHHHHHHHHHCCCEEEe
Confidence            1    223344666677775443

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.21  E-value=1.3e-06  Score=75.34  Aligned_cols=65  Identities=18%  Similarity=0.094  Sum_probs=39.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccc-eeEeEEEEE--EE-CCEEEEEEEEeCCCchh
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTI-GVEFQTQKM--DI-NGKEVKAQIWDTAGQER   75 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~l~D~~G~~~   75 (223)
                      ....++|+|+|.||+|||||+|+|++.........++ +.+.....+  .+ ......+.|+||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            4567899999999999999999999876321111111 111111111  11 12234677999999643

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.19  E-value=7.8e-07  Score=69.33  Aligned_cols=93  Identities=16%  Similarity=0.070  Sum_probs=61.9

Q ss_pred             CCCchh-hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 027417           70 TAGQER-FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEA  148 (223)
Q Consensus        70 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  148 (223)
                      .|||.. ........+.++|++|.|+|+.++.+....     .+. ..  ++|.++|+||+|+.+...  .+...++.+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS--RKETIILLNKVDIADEKT--TKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence            366543 233556677899999999999998664321     011 11  689999999999985311  2223344455


Q ss_pred             cCCeEEEEccCCCCCHHHHHHHHHH
Q 027417          149 QGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus       149 ~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      .+.++ .+||+++.|++++++.+..
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            67888 9999999999999887754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.18  E-value=1.3e-06  Score=72.54  Aligned_cols=91  Identities=16%  Similarity=0.106  Sum_probs=54.6

Q ss_pred             EEEEEEEeCCCchh--hhc-h---hHh--hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           62 EVKAQIWDTAGQER--FRA-V---TSA--YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        62 ~~~~~l~D~~G~~~--~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      .+.+.++||||...  ... .   ...  ....++.+++|+|.........   ....+...   -.+..+|+||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc
Confidence            35677999999533  111 1   111  1235789999999987543222   22333322   245788999999753


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 027417          134 AREVTTAEGKALAEAQGLFFMETSALDSSNV  164 (223)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  164 (223)
                          ..-.+..+....+.|+..++.  |+++
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence                344556666778999877765  5554

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.16  E-value=4.3e-06  Score=66.33  Aligned_cols=92  Identities=16%  Similarity=0.062  Sum_probs=56.0

Q ss_pred             EEEEEEEeCCCchh--hhc-hhH-----hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCC
Q 027417           62 EVKAQIWDTAGQER--FRA-VTS-----AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLK  132 (223)
Q Consensus        62 ~~~~~l~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~  132 (223)
                      .+.+.++||||...  ... +..     .....+|.+++|+|......   .......+..    ..+ ..+|.||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence            35678999999665  211 221     12457999999999875321   1122223322    244 67889999965


Q ss_pred             CCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417          133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      .    ....+..+....+.|+..++  .|+++++
T Consensus       253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          253 A----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            3    23445667778889977766  4555544

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.05  E-value=8.7e-06  Score=70.85  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      ..|+|+|+.|||||||++.+.+..
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            459999999999999999999864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.01  E-value=2.3e-06  Score=68.11  Aligned_cols=90  Identities=16%  Similarity=0.129  Sum_probs=61.1

Q ss_pred             hhHhhhcCCCEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCCeEEE
Q 027417           79 VTSAYYRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKALAEAQGLFFME  155 (223)
Q Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~  155 (223)
                      +....+.++|.+++|+|+.+|.. ...+..++.....   .++|+++|+||+|+.+....  ..+...++....+.+++.
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~  155 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL  155 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence            33446789999999999998654 4445555544322   26889999999999864220  123333444456888999


Q ss_pred             EccCCCCCHHHHHHHH
Q 027417          156 TSALDSSNVTAAFQTV  171 (223)
Q Consensus       156 ~Sa~~~~~i~~~~~~l  171 (223)
                      +||.++.|++++++.+
T Consensus       156 ~sa~~~~g~~~L~~~~  171 (307)
T 1t9h_A          156 TSSKDQDSLADIIPHF  171 (307)
T ss_dssp             CCHHHHTTCTTTGGGG
T ss_pred             EecCCCCCHHHHHhhc
Confidence            9999888877666543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.88  E-value=8.6e-07  Score=74.85  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=62.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh--hhchh--------H
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--FRAVT--------S   81 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~--------~   81 (223)
                      ...+.|+++|.+||||||+.++|....... ...+.............+......+||..|.+.  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            445789999999999999999987542211 111111110000000011112335789888632  22222        4


Q ss_pred             hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEE
Q 027417           82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVG  126 (223)
Q Consensus        82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~  126 (223)
                      .++...++.++|+|.++. +.+....|+..+...   ..+++++-
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~  156 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE  156 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence            456667888999999987 566667777766554   23444443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.84  E-value=1.9e-05  Score=63.39  Aligned_cols=91  Identities=10%  Similarity=0.016  Sum_probs=51.9

Q ss_pred             EEEEEeCCCchhhhch-hHh-----hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027417           64 KAQIWDTAGQERFRAV-TSA-----YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV  137 (223)
Q Consensus        64 ~~~l~D~~G~~~~~~~-~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~  137 (223)
                      .+.++|++|....... ...     ..-.+|-.++++|.....   .+......+....   ...++++||.|...    
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a----  282 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA----  282 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence            3557999995432221 111     113578889999976653   2223333333221   23478899999632    


Q ss_pred             CHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417          138 TTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      ..-.+.......+.|+..++  +|+++++
T Consensus       283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          283 RGGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            23335566677789977766  5655543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.79  E-value=6.6e-05  Score=60.88  Aligned_cols=85  Identities=19%  Similarity=0.185  Sum_probs=56.6

Q ss_pred             hhcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCeEEEEccCC
Q 027417           83 YYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV-TTAEGKALAEAQGLFFMETSALD  160 (223)
Q Consensus        83 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~  160 (223)
                      ...++|.+++|.+. +|. +...+..++......   ++|+++|+||+|+.+.... ..++........+.+++.+|+.+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            35789999988765 454 344555555443222   5788999999999853210 01122233345688899999999


Q ss_pred             CCCHHHHHHHH
Q 027417          161 SSNVTAAFQTV  171 (223)
Q Consensus       161 ~~~i~~~~~~l  171 (223)
                      +.|++++...+
T Consensus       203 ~~gl~~L~~~~  213 (358)
T 2rcn_A          203 QDGLKPLEEAL  213 (358)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHHhc
Confidence            99999887654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.55  E-value=7.7e-05  Score=62.25  Aligned_cols=26  Identities=27%  Similarity=0.308  Sum_probs=22.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..+..-|.|+|++++|||+|+|.|++
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhh
Confidence            44567789999999999999999986

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.46  E-value=7.2e-05  Score=54.67  Aligned_cols=23  Identities=26%  Similarity=0.694  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .+++|+|++|||||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.43  E-value=8.6e-05  Score=60.21  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEF   39 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~   39 (223)
                      .++|+|++|||||||++.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999998543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.43  E-value=0.0011  Score=55.25  Aligned_cols=81  Identities=17%  Similarity=0.080  Sum_probs=45.4

Q ss_pred             EEEEEEEeCCCchhhhc-hhH-----hhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCC
Q 027417           62 EVKAQIWDTAGQERFRA-VTS-----AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDA  134 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~  134 (223)
                      .+.+.|+||||...... +..     .....++.+++|+|.......   ......+..    ..+ .-+|+||.|....
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~  255 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR  255 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence            35678999999544321 111     123478999999998754321   122222222    233 3478999997532


Q ss_pred             cccCHHHHHHHHHHcCCeE
Q 027417          135 REVTTAEGKALAEAQGLFF  153 (223)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~  153 (223)
                        .  ..+..+....+.|+
T Consensus       256 --~--g~~l~i~~~~~~Pi  270 (433)
T 2xxa_A          256 --G--GAALSIRHITGKPI  270 (433)
T ss_dssp             --C--THHHHHHHHHCCCE
T ss_pred             --H--HHHHHHHHHHCCCe
Confidence              1  23345555667663

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.39  E-value=0.00029  Score=55.91  Aligned_cols=23  Identities=48%  Similarity=0.797  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -.++|+|++|||||||++.|. ..
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh
Confidence            357899999999999999998 53

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.37  E-value=3.7e-05  Score=61.10  Aligned_cols=24  Identities=38%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -.++|+|++|||||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            478999999999999999998753

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.35  E-value=0.00011  Score=53.75  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999863

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.31  E-value=0.00013  Score=54.24  Aligned_cols=22  Identities=45%  Similarity=0.575  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      -.++|+|++|||||||++.|.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999999876

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.21  E-value=0.00018  Score=53.28  Aligned_cols=22  Identities=18%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -|+|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4899999999999999999874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.21  E-value=0.00018  Score=52.72  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -.|+|+|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.17  E-value=0.00021  Score=53.35  Aligned_cols=23  Identities=43%  Similarity=0.483  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998743

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.15  E-value=0.00022  Score=53.82  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      --++|+|++|||||||++.|.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            357899999999999999998743

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.14  E-value=0.0002  Score=51.78  Aligned_cols=20  Identities=45%  Similarity=0.579  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027417           16 KVVLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~   35 (223)
                      -++|+|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            46899999999999999644

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.13  E-value=0.00024  Score=53.58  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|++|||||||++.|.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999998874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.11  E-value=0.00035  Score=50.44  Aligned_cols=23  Identities=35%  Similarity=0.392  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|+|++||||||+++.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999998865

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.11  E-value=0.00027  Score=52.40  Aligned_cols=23  Identities=35%  Similarity=0.528  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      --|+|+|++|||||||++.|.+.
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            45789999999999999999864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.10  E-value=0.00027  Score=52.39  Aligned_cols=23  Identities=30%  Similarity=0.325  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|+|.+||||||+++.|..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.08  E-value=0.00033  Score=52.26  Aligned_cols=26  Identities=31%  Similarity=0.220  Sum_probs=22.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      +....|+|+|++|||||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44568999999999999999988764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.06  E-value=0.00031  Score=52.49  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-|+|+|++|||||||++.|.+.
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35889999999999999999875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.05  E-value=0.00034  Score=50.05  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            57899999999999999998754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.05  E-value=0.00035  Score=51.37  Aligned_cols=21  Identities=38%  Similarity=0.646  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.05  E-value=0.00031  Score=53.64  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|+.|||||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988874

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.01  E-value=0.00038  Score=50.08  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999988763

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.99  E-value=0.00039  Score=51.49  Aligned_cols=24  Identities=38%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      ..|+|+|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999988753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.98  E-value=0.00041  Score=50.79  Aligned_cols=21  Identities=33%  Similarity=0.490  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -++|+|++|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.97  E-value=0.00046  Score=49.44  Aligned_cols=20  Identities=20%  Similarity=0.313  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 027417           15 FKVVLIGDSAVGKSNLLARF   34 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l   34 (223)
                      ..|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999988

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.97  E-value=0.00042  Score=51.51  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999998753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.97  E-value=0.00038  Score=52.75  Aligned_cols=22  Identities=41%  Similarity=0.397  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|+.|||||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999988874

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.96  E-value=0.00046  Score=52.88  Aligned_cols=22  Identities=36%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998874

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.94  E-value=0.00046  Score=51.10  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      -.|+|+|++|||||||++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.94  E-value=0.012  Score=43.71  Aligned_cols=86  Identities=14%  Similarity=0.082  Sum_probs=55.4

Q ss_pred             EEEEEEEeCCCc-hhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH
Q 027417           62 EVKAQIWDTAGQ-ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTA  140 (223)
Q Consensus        62 ~~~~~l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  140 (223)
                      .+.+.++|+|+. ..  ......+..+|.+|++...+ ..++..+...++.+....  +.++.+|.|+.|.... . ...
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~-~-~~~  139 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS-K-DGD  139 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS-C-HHH
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc-h-HHH
Confidence            356779999975 32  23445667899999888875 455666666666665533  4568899999986531 1 134


Q ss_pred             HHHHHHHHcCCeEE
Q 027417          141 EGKALAEAQGLFFM  154 (223)
Q Consensus       141 ~~~~~~~~~~~~~~  154 (223)
                      +..+..+..+.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            45555555676654

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.93  E-value=0.00061  Score=49.21  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999886

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.92  E-value=0.00055  Score=49.06  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.92  E-value=0.00055  Score=52.41  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027417           15 FKVVLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~   35 (223)
                      ..|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999988

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.92  E-value=0.00049  Score=51.74  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999998874

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.91  E-value=0.00049  Score=53.43  Aligned_cols=22  Identities=32%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|+.|||||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999988874

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.91  E-value=0.00049  Score=53.81  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|+.|||||||++.+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3689999999999999988874

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.90  E-value=0.0005  Score=52.55  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988874

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.88  E-value=0.00059  Score=51.04  Aligned_cols=22  Identities=23%  Similarity=0.441  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998854

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.88  E-value=0.00046  Score=50.12  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -.++|+|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.87  E-value=0.00054  Score=53.01  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998874

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.86  E-value=0.00055  Score=53.28  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4689999999999999998874

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.86  E-value=0.00062  Score=50.94  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998854

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.85  E-value=0.00059  Score=51.87  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988874

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.85  E-value=0.00066  Score=50.54  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ...|+|+|+.|||||||++.|.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999988763

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.85  E-value=0.00057  Score=50.36  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999988764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.85  E-value=0.00058  Score=52.55  Aligned_cols=22  Identities=32%  Similarity=0.389  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.85  E-value=0.00078  Score=49.81  Aligned_cols=28  Identities=21%  Similarity=0.402  Sum_probs=22.6

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ........|+|+|.+||||||+.+.|..
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3345557899999999999999998864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.85  E-value=0.00065  Score=52.08  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998874

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.84  E-value=0.00059  Score=52.98  Aligned_cols=22  Identities=41%  Similarity=0.451  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4689999999999999988874

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.83  E-value=0.00061  Score=52.16  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.83  E-value=0.00063  Score=52.63  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998874

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.83  E-value=0.00062  Score=52.81  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999998763

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.82  E-value=0.00067  Score=49.00  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998875

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.82  E-value=0.0019  Score=45.04  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|.|++|+|||++++.+..
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCC
T ss_pred             CCcEEEECCCCccHHHHHHHHHH
Confidence            35699999999999999997765

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.81  E-value=0.00068  Score=52.22  Aligned_cols=22  Identities=36%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+.
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999884

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.81  E-value=0.00078  Score=50.34  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      +.|+|+|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.81  E-value=0.00066  Score=52.27  Aligned_cols=22  Identities=45%  Similarity=0.603  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988874

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.81  E-value=0.00076  Score=49.87  Aligned_cols=22  Identities=36%  Similarity=0.560  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      -.|+|+|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.80  E-value=0.00071  Score=53.66  Aligned_cols=22  Identities=27%  Similarity=0.308  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6899999999999999988863

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.80  E-value=0.0005  Score=51.47  Aligned_cols=22  Identities=27%  Similarity=0.240  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.79  E-value=0.00067  Score=52.58  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999998874

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.79  E-value=0.00074  Score=52.57  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999884

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.78  E-value=0.00077  Score=49.91  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .+|+|+|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999998876

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.77  E-value=0.00083  Score=53.19  Aligned_cols=24  Identities=33%  Similarity=0.299  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEF   39 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~   39 (223)
                      .++++|++|||||||++.|.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999987543

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.77  E-value=0.00084  Score=49.50  Aligned_cols=21  Identities=29%  Similarity=0.591  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.77  E-value=0.00071  Score=52.79  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988874

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.77  E-value=0.00073  Score=52.96  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988874

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.76  E-value=0.00085  Score=50.46  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|+|++||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.76  E-value=0.00079  Score=49.82  Aligned_cols=24  Identities=25%  Similarity=0.203  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ...|+|+|++|||||||++.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988763

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.75  E-value=0.00092  Score=48.77  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .|+|.|.+||||||+++.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.75  E-value=0.00076  Score=52.05  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988874

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.74  E-value=0.001  Score=49.40  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      +.|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998876

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.74  E-value=0.00079  Score=53.63  Aligned_cols=27  Identities=26%  Similarity=0.230  Sum_probs=22.7

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .....-|+|+|++|||||||++.|.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            344567899999999999999988774

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.73  E-value=0.00077  Score=50.69  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|++|||||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999873

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.73  E-value=0.00079  Score=52.34  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988874

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.72  E-value=0.001  Score=48.57  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|+|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998864

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.70  E-value=0.00098  Score=48.41  Aligned_cols=23  Identities=22%  Similarity=0.252  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-++|+|++|||||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46889999999999999999864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.69  E-value=0.0013  Score=47.89  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.69  E-value=0.0011  Score=48.81  Aligned_cols=27  Identities=19%  Similarity=0.159  Sum_probs=22.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ......|+|+|.+||||||+.+.|...
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            344578999999999999999988764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.69  E-value=0.0011  Score=48.32  Aligned_cols=22  Identities=23%  Similarity=0.151  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.69  E-value=0.00055  Score=51.88  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh-cC
Q 027417           16 KVVLIGDSAVGKSNLLARFA-RD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~-~~   37 (223)
                      -|+|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            57999999999999999998 64

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.69  E-value=0.0012  Score=49.00  Aligned_cols=24  Identities=21%  Similarity=0.043  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ....|+|.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.69  E-value=0.00099  Score=49.82  Aligned_cols=22  Identities=18%  Similarity=0.447  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.68  E-value=0.0012  Score=50.44  Aligned_cols=25  Identities=12%  Similarity=0.193  Sum_probs=21.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...++|+|+|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.66  E-value=0.0011  Score=48.16  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.66  E-value=0.0012  Score=49.57  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.66  E-value=0.0011  Score=51.51  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      .++|+|+.|||||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999988753

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.66  E-value=0.0014  Score=48.58  Aligned_cols=27  Identities=19%  Similarity=0.314  Sum_probs=22.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ......|+|+|++|||||||++.|.+.
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            344567999999999999999988764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.65  E-value=0.0013  Score=47.98  Aligned_cols=25  Identities=16%  Similarity=0.368  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ....|+|+|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999988653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.62  E-value=0.0011  Score=51.86  Aligned_cols=20  Identities=35%  Similarity=0.469  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      ++|+|++|+|||||++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999987

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.62  E-value=0.00073  Score=47.74  Aligned_cols=23  Identities=26%  Similarity=0.445  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -.++|+|++|+|||+|++.+.+.
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999998874

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.62  E-value=0.0014  Score=47.77  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.60  E-value=0.0015  Score=48.44  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999998875

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.60  E-value=0.0014  Score=49.65  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=21.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ......|+|+|.+||||||+.+.|..
T Consensus        13 ~~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           13 SPKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999998864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.59  E-value=0.0011  Score=47.78  Aligned_cols=21  Identities=38%  Similarity=0.551  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.59  E-value=0.0018  Score=47.78  Aligned_cols=25  Identities=16%  Similarity=0.413  Sum_probs=21.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .....|+|.|.+||||||+.+.|..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999998864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.58  E-value=0.0011  Score=53.67  Aligned_cols=23  Identities=39%  Similarity=0.509  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999998843

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.57  E-value=0.0014  Score=46.73  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.57  E-value=0.001  Score=54.10  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-+++|+|++|||||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            458899999999999999998874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.56  E-value=0.0015  Score=51.27  Aligned_cols=25  Identities=20%  Similarity=0.246  Sum_probs=21.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ....-|+|.|++||||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.56  E-value=0.0013  Score=50.49  Aligned_cols=21  Identities=38%  Similarity=0.648  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      ++|+|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998863

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.55  E-value=0.00063  Score=49.28  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .|+|+|++|||||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988863

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.55  E-value=0.0013  Score=53.36  Aligned_cols=23  Identities=35%  Similarity=0.322  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            36899999999999999888743

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.54  E-value=0.0012  Score=52.05  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988874

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.54  E-value=0.0012  Score=53.45  Aligned_cols=22  Identities=32%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .|+|+|++|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7899999999999999998763

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.54  E-value=0.00086  Score=53.22  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.|.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5799999999999999988763

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.53  E-value=0.0013  Score=53.18  Aligned_cols=23  Identities=39%  Similarity=0.449  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999988753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.52  E-value=0.0015  Score=49.23  Aligned_cols=23  Identities=26%  Similarity=0.599  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|+|.+||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998863

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.51  E-value=0.0014  Score=53.15  Aligned_cols=22  Identities=36%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|+.|||||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            3689999999999999998874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.51  E-value=0.0017  Score=48.99  Aligned_cols=22  Identities=14%  Similarity=0.289  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      +.|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.50  E-value=0.0018  Score=49.54  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|+|+.|||||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999998876

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.50  E-value=0.0015  Score=53.09  Aligned_cols=23  Identities=39%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999988753

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.50  E-value=0.002  Score=51.46  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=22.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ....+-|+|+|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998865

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.49  E-value=0.0015  Score=53.38  Aligned_cols=23  Identities=48%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            36899999999999999998743

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.49  E-value=0.0084  Score=48.12  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      ++|.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998876

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.48  E-value=0.0018  Score=46.80  Aligned_cols=24  Identities=33%  Similarity=0.542  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-.++|.|++|+|||+|++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.48  E-value=0.0024  Score=46.49  Aligned_cols=24  Identities=29%  Similarity=0.311  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ....|+|+|.+||||||+++.|..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            456789999999999999998865

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.47  E-value=0.0016  Score=47.15  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|+|.+||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            35689999999999999998864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.46  E-value=0.0019  Score=47.68  Aligned_cols=24  Identities=17%  Similarity=0.116  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ...|+|.|.+||||||+++.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999988764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.46  E-value=0.0015  Score=49.07  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.46  E-value=0.0016  Score=53.06  Aligned_cols=22  Identities=36%  Similarity=0.424  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|+.|||||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            3689999999999999998874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.46  E-value=0.0016  Score=53.14  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            36899999999999999988753

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.44  E-value=0.0019  Score=47.31  Aligned_cols=23  Identities=13%  Similarity=0.307  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|+|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.44  E-value=0.0016  Score=50.04  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=22.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ......|+|+|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999998865

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.43  E-value=0.0023  Score=50.41  Aligned_cols=26  Identities=15%  Similarity=0.151  Sum_probs=22.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ......|+|+|++|||||||++.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999987765

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.43  E-value=0.0017  Score=49.99  Aligned_cols=21  Identities=19%  Similarity=0.436  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -|+|+|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.43  E-value=0.0016  Score=52.30  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|++|||||||++.+.+.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998874

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.41  E-value=0.0019  Score=48.63  Aligned_cols=20  Identities=15%  Similarity=0.473  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      |+|+|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999988864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.41  E-value=0.0017  Score=51.47  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-.|+|+|+.||||||+++.|.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34788999999999999998875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.40  E-value=0.012  Score=46.97  Aligned_cols=24  Identities=21%  Similarity=0.409  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ...|+|.|++|+|||+|++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            356999999999999999998653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.39  E-value=0.0019  Score=48.38  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .+.|+|+|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998854

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.39  E-value=0.0021  Score=47.73  Aligned_cols=23  Identities=26%  Similarity=0.235  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|.|.+||||||+++.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.39  E-value=0.002  Score=46.95  Aligned_cols=21  Identities=14%  Similarity=0.235  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.39  E-value=0.0019  Score=52.73  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .|+|+|++|||||||++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998863

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.39  E-value=0.0019  Score=50.37  Aligned_cols=21  Identities=38%  Similarity=0.648  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |+|+|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999863

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.38  E-value=0.0017  Score=52.79  Aligned_cols=23  Identities=22%  Similarity=0.522  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -.++|+|+.|||||||++.|.+.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            37899999999999999999874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.37  E-value=0.0023  Score=47.34  Aligned_cols=24  Identities=21%  Similarity=0.213  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...-|+|+|++|||||||++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998875

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.37  E-value=0.0022  Score=47.08  Aligned_cols=23  Identities=17%  Similarity=0.327  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|.|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.36  E-value=0.0019  Score=51.86  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -.++|+|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999988763

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.35  E-value=0.0025  Score=50.56  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ...-|+|+|++|||||||++.|.+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999988873

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.35  E-value=0.002  Score=51.04  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      --++|+|+.||||||+++.|.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999998865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.34  E-value=0.0022  Score=45.95  Aligned_cols=21  Identities=19%  Similarity=0.455  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.34  E-value=0.0023  Score=46.16  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..+.|+|.+|||||||+.+|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998876

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.33  E-value=0.0029  Score=46.02  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.33  E-value=0.0013  Score=53.05  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            36899999999999999988743

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.32  E-value=0.0022  Score=48.15  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|++|+|||||+..+.+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999988853

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.31  E-value=0.0022  Score=46.49  Aligned_cols=21  Identities=24%  Similarity=0.308  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -.+|+|+.|+|||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999865

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.31  E-value=0.00083  Score=50.02  Aligned_cols=21  Identities=19%  Similarity=0.425  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999998865

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.30  E-value=0.0021  Score=53.28  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .|+|+|+.|||||||++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.28  E-value=0.0021  Score=52.70  Aligned_cols=22  Identities=45%  Similarity=0.673  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999998874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.28  E-value=0.0027  Score=48.81  Aligned_cols=21  Identities=29%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027417           15 FKVVLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~   35 (223)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999887

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.28  E-value=0.0027  Score=49.05  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|+|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999998875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.28  E-value=0.0024  Score=46.34  Aligned_cols=22  Identities=41%  Similarity=0.525  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|+|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.26  E-value=0.0019  Score=48.91  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=22.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ....-|+|.|+.|||||||++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            44567899999999999999988764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.25  E-value=0.0029  Score=45.18  Aligned_cols=22  Identities=36%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      -.|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.25  E-value=0.0027  Score=45.93  Aligned_cols=23  Identities=26%  Similarity=0.250  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|+|.+||||||+++.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998876

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.24  E-value=0.0025  Score=48.92  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|+|++|+|||+|++++.+
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            4699999999999999999876

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.23  E-value=0.011  Score=49.18  Aligned_cols=97  Identities=16%  Similarity=0.183  Sum_probs=52.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhc------------------CCCCC---CCCccceeEeEEEEE--EE-CCEEEEEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFAR------------------DEFYP---NSKSTIGVEFQTQKM--DI-NGKEVKAQ   66 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~------------------~~~~~---~~~~~~~~~~~~~~~--~~-~~~~~~~~   66 (223)
                      ..+..-|.|+|+.++|||+|+|.|+.                  ..|..   ....|.|+-.-...+  .. ++..+.+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            45667778999999999999996641                  11211   111233332221111  11 55678899


Q ss_pred             EEeCCCchhhhch-------hHhhhcCCCEEEEEEEC-CCHhhHHHHHH
Q 027417           67 IWDTAGQERFRAV-------TSAYYRGAVGALLVYDI-SRRQTFDSIGR  107 (223)
Q Consensus        67 l~D~~G~~~~~~~-------~~~~~~~~d~~i~v~d~-~~~~s~~~~~~  107 (223)
                      ++||.|.......       .....--++.+|+-..- -+...++.+..
T Consensus       144 llDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~~L~~  192 (457)
T 4ido_A          144 LMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQL  192 (457)
T ss_dssp             EEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHHHHHH
T ss_pred             EEeccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHHHHHH
Confidence            9999994332211       11111235666554433 34455666543

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.23  E-value=0.0021  Score=46.29  Aligned_cols=24  Identities=29%  Similarity=0.506  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-.++|.|++|+|||+|++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.22  E-value=0.003  Score=48.45  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998865

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.21  E-value=0.003  Score=46.54  Aligned_cols=23  Identities=39%  Similarity=0.471  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ..++|.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999988763

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.21  E-value=0.0034  Score=46.92  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.20  E-value=0.0024  Score=54.27  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      .++|+|++|||||||++.+.+..
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998743

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.20  E-value=0.0018  Score=46.84  Aligned_cols=22  Identities=18%  Similarity=0.187  Sum_probs=15.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.18  E-value=0.0013  Score=53.20  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999988743

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.16  E-value=0.0032  Score=47.39  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-.++|.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.16  E-value=0.0027  Score=49.94  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.11  E-value=0.0036  Score=47.58  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..+.|+|.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999998864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.10  E-value=0.0033  Score=46.81  Aligned_cols=21  Identities=24%  Similarity=0.222  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -++|+|++|+|||||+..+.+
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.10  E-value=0.0033  Score=47.55  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|++|+|||||+..+.+.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999998873

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.09  E-value=0.0034  Score=46.76  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|+|.+||||||+++.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998865

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.09  E-value=0.004  Score=47.28  Aligned_cols=28  Identities=18%  Similarity=0.268  Sum_probs=21.6

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ........|+|+|.+||||||+.+.|..
T Consensus        11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           11 DDKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             ---CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3444557899999999999999998864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.08  E-value=0.0029  Score=53.09  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -.++|+|+.|||||||++.|.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            46899999999999999998774

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.08  E-value=0.0033  Score=51.00  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .--|+|+|+.||||||+++.|.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34688999999999999998865

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.06  E-value=0.0041  Score=43.82  Aligned_cols=19  Identities=37%  Similarity=0.599  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 027417           17 VVLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~   35 (223)
                      .+|+|+.|+|||||++++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3799999999999999875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.05  E-value=0.004  Score=43.51  Aligned_cols=25  Identities=16%  Similarity=0.064  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ....|+|.|++|+|||++.+.+...
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHh
Confidence            3457999999999999999988764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.03  E-value=0.0038  Score=47.33  Aligned_cols=25  Identities=12%  Similarity=0.199  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ...-|+|.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467899999999999999988763

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.03  E-value=0.0034  Score=48.30  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      -.|+|+|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.01  E-value=0.0036  Score=52.76  Aligned_cols=22  Identities=32%  Similarity=0.760  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      --|+|+|+.|||||||++.|.+
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHH
Confidence            4688999999999999998865

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.98  E-value=0.0045  Score=48.42  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~   35 (223)
                      ..+.|+|.|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999999886

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.98  E-value=0.0029  Score=50.48  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-++|+|..|||||||++.|.+.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            35689999999999999999975

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.96  E-value=0.0041  Score=50.24  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      +++|+|+.|+|||||++.+.+.
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999885

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.0062  Score=45.95  Aligned_cols=26  Identities=12%  Similarity=-0.040  Sum_probs=20.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ...+-|+.-|+++.||++|++++.+.
T Consensus        27 ~nkilvl~~~~~~~~~~~~~~~lf~~   52 (233)
T 3uc9_A           27 QNKILVLSDHPHNFLKTQFLQDLFHC   52 (233)
T ss_dssp             CCEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred             CCceEEEecCcccccHHHHHHHHhcc
Confidence            33455555599999999999999986

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.93  E-value=0.0041  Score=50.78  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      -.++|+|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998886

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.92  E-value=0.0045  Score=48.67  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|+|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.89  E-value=0.0043  Score=48.61  Aligned_cols=23  Identities=26%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-.|+|.|++|+|||+|++++..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            45799999999999999999876

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.87  E-value=0.12  Score=40.89  Aligned_cols=20  Identities=10%  Similarity=0.260  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      +++.|++|+|||++++++..
T Consensus        51 ~L~~G~~G~GKT~la~~la~   70 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCH   70 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHH
Confidence            45556699999999999875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.86  E-value=0.0046  Score=48.11  Aligned_cols=25  Identities=24%  Similarity=0.272  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ....++|.|++|+|||+|++++...
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3456999999999999999998763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.86  E-value=0.0058  Score=46.79  Aligned_cols=23  Identities=26%  Similarity=0.309  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|.|++|+|||+|++++..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998876

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.85  E-value=0.0046  Score=52.05  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -++|+|+.|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            568999999999999998876

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.84  E-value=0.0038  Score=46.45  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999888765

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.84  E-value=0.0053  Score=48.29  Aligned_cols=23  Identities=22%  Similarity=0.133  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..-+++.|+||+|||+|++++..
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45678889999999999998875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.83  E-value=0.0051  Score=46.06  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.82  E-value=0.0052  Score=45.40  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .++|.|++|+|||+|++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999998875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.82  E-value=0.0071  Score=51.80  Aligned_cols=23  Identities=26%  Similarity=0.341  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      .++|+|+.|||||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999988753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.80  E-value=0.0065  Score=47.82  Aligned_cols=25  Identities=16%  Similarity=0.359  Sum_probs=20.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .....++|.|++|+|||++++.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999986654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.80  E-value=0.005  Score=48.57  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-.|+|.|++|+|||+|++++..
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHH
Confidence            34689999999999999999886

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.75  E-value=0.0069  Score=44.59  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=21.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .....|+|.|.+||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.74  E-value=0.0054  Score=48.77  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -.++|.|++|+|||+|++.+.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999988763

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.71  E-value=0.0055  Score=47.71  Aligned_cols=21  Identities=29%  Similarity=0.313  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -++|+|++|+|||||+..+.+
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999998875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.71  E-value=0.0072  Score=51.73  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|||||||++.|.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999988753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.69  E-value=0.0056  Score=52.92  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6899999999999999988874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.68  E-value=0.0061  Score=50.81  Aligned_cols=22  Identities=45%  Similarity=0.534  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      +++|+|+.|+|||||++.+.+.
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999998874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.0079  Score=52.24  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      .++|+|+.|+|||||++.|.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57999999999999999988753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.65  E-value=0.0091  Score=46.19  Aligned_cols=26  Identities=35%  Similarity=0.482  Sum_probs=22.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .....++|.|++|+|||+|++++...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            44568999999999999999988763

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.64  E-value=0.007  Score=44.77  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-|+|+|++|+|||+|...|...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999864

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.59  E-value=0.0071  Score=49.17  Aligned_cols=20  Identities=30%  Similarity=0.522  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027417           15 FKVVLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~   35 (223)
                      + .+|+|+.|||||||+++++
T Consensus        25 ~-~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 I-TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             E-EEEECCTTSSHHHHHHHHH
T ss_pred             e-EEEECCCCCCHHHHHHHHH
Confidence            5 4599999999999999886

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.59  E-value=0.0069  Score=50.14  Aligned_cols=23  Identities=26%  Similarity=0.264  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..-|+|+|.+||||||+.+.|..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999875

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.58  E-value=0.01  Score=46.69  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -.++|+|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999988763

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.58  E-value=0.0089  Score=51.69  Aligned_cols=22  Identities=41%  Similarity=0.578  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6799999999999999988874

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.54  E-value=0.0091  Score=45.22  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..+++.|+|+|||||||+...|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            357899999999999999998854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.51  E-value=0.01  Score=51.57  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      .++|+|+.|+|||||++.|.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57999999999999999988753

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.50  E-value=0.0079  Score=47.19  Aligned_cols=23  Identities=30%  Similarity=0.626  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...++|.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.49  E-value=0.0092  Score=43.94  Aligned_cols=21  Identities=43%  Similarity=0.466  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .|.|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.48  E-value=0.0075  Score=51.64  Aligned_cols=23  Identities=13%  Similarity=0.355  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      .++|+|+.|||||||++.|.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.42  E-value=0.0092  Score=51.09  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      .++|+|+.|+|||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998853

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.41  E-value=0.0085  Score=52.06  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      .++|+|+.|+|||||++.|.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998853

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.41  E-value=0.0084  Score=47.83  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-.|+|.|+||+|||+|++++...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            357999999999999999998863

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.41  E-value=0.008  Score=48.55  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-.++|.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999998876

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.41  E-value=0.0082  Score=47.35  Aligned_cols=85  Identities=11%  Similarity=0.096  Sum_probs=48.5

Q ss_pred             EEEEEEeCCCchhhhch-h---Hhhhc--CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027417           63 VKAQIWDTAGQERFRAV-T---SAYYR--GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE  136 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  136 (223)
                      +.+.|+||+|....... .   ...+.  ..+.+++|+|.+..  .+.+..+...+..   . ...-+|.||.|...   
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l-~~~giVltk~D~~~---  253 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---V-PVNQYIFTKIDETT---  253 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---S-CCCEEEEECTTTCS---
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---C-CCCEEEEeCCCccc---
Confidence            46789999996543221 1   12222  36778899987753  2334443333221   1 12356679999653   


Q ss_pred             cCHHHHHHHHHHcCCeEEEEc
Q 027417          137 VTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~S  157 (223)
                       ....+...+...+.|+..++
T Consensus       254 -~~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          254 -SLGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             -CCHHHHHHHHTCSCCCSEEC
T ss_pred             -chhHHHHHHHHHCcCEEEEE
Confidence             23356667778888865543

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.0085  Score=49.70  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .--|++.|+||+|||+|++++.+
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34599999999999999999886

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.40  E-value=0.0097  Score=47.17  Aligned_cols=23  Identities=43%  Similarity=0.530  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...++|.|++|+|||+|+.++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998875

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.39  E-value=0.009  Score=45.19  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999776654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.39  E-value=0.0065  Score=52.71  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999988763

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.38  E-value=0.0056  Score=52.90  Aligned_cols=22  Identities=36%  Similarity=0.455  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6789999999999999977763

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.36  E-value=0.0085  Score=48.40  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -+.|+|++|+|||||+..+.+.
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998874

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.35  E-value=0.009  Score=47.87  Aligned_cols=22  Identities=23%  Similarity=0.566  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .+++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.34  E-value=0.0093  Score=48.32  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.34  E-value=0.0098  Score=47.13  Aligned_cols=86  Identities=19%  Similarity=0.114  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCchhhhc-hh------Hhhh-----cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 027417           63 VKAQIWDTAGQERFRA-VT------SAYY-----RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD  130 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~-~~------~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  130 (223)
                      +.+.++||||...... +.      ...+     ..++.+++|+|....  .+.+.. ...+....   ...-+|.||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~---~i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV---NVTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS---CCCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC---CCCEEEEeCCC
Confidence            3577999999532211 11      1111     247889999998743  222221 22222221   23456789999


Q ss_pred             CCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027417          131 LKDAREVTTAEGKALAEAQGLFFMETSA  158 (223)
Q Consensus       131 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (223)
                      ...    ..-.+..+....+.|+..+..
T Consensus       261 ~~~----~gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTA----KGGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred             Ccc----chHHHHHHHHHHCCCEEEEeC
Confidence            642    233467777888998766644

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.33  E-value=0.0076  Score=46.47  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=21.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .....|+|.|.+||||||+++.|..
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998765

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.32  E-value=0.013  Score=47.25  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..+|+|+|++|+||||+.+.|..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            46899999999999999987654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.32  E-value=0.011  Score=43.84  Aligned_cols=19  Identities=37%  Similarity=0.599  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 027417           17 VVLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~   35 (223)
                      .+|+|+.|+|||||++++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            3789999999999999874

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.30  E-value=0.011  Score=47.17  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|.|+||+|||+|++++..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999999876

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.29  E-value=0.0074  Score=52.27  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6799999999999999987763

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.27  E-value=0.01  Score=49.35  Aligned_cols=24  Identities=29%  Similarity=0.245  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..--|++.||||+|||+|++++.+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            346799999999999999999986

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.27  E-value=0.01  Score=51.56  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027417           17 VVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~   38 (223)
                      ++|+|+.|+|||||++.+.+..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7999999999999999998754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.012  Score=48.87  Aligned_cols=24  Identities=21%  Similarity=0.180  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..--|++.||||+|||+|++++.+
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHH
Confidence            346799999999999999999986

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.25  E-value=0.011  Score=47.11  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998865

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.24  E-value=0.0047  Score=47.62  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .|+|.|++|+|||+|++++..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999998875

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.22  E-value=0.0015  Score=49.48  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027417           17 VVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~   38 (223)
                      ++|+|+.|||||||++.+.+..
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            4789999999999999988743

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.18  E-value=0.011  Score=47.29  Aligned_cols=22  Identities=14%  Similarity=0.486  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988753

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.18  E-value=0.012  Score=47.30  Aligned_cols=22  Identities=36%  Similarity=0.682  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.15  E-value=0.012  Score=48.42  Aligned_cols=23  Identities=30%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .--|++.||||+|||.|++++.+
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHH
Confidence            45699999999999999999986

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.09  E-value=0.015  Score=41.98  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .=|+|.|++|+||||+...|...
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            35899999999999999988874

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.09  E-value=0.011  Score=47.63  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -.++|.|++|+|||+|++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.08  E-value=0.011  Score=47.87  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..-.++|.|++|+|||+|++.+..
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998875

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.08  E-value=0.012  Score=49.11  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-.++|.|++|+|||+|++.+.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998875

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.07  E-value=0.012  Score=49.88  Aligned_cols=22  Identities=36%  Similarity=0.602  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -|+|+|++|+|||+|++++.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998863

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.06  E-value=0.013  Score=45.02  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ...|+|.|++|+|||+|++.+...
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHh
Confidence            357999999999999999998764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.05  E-value=0.013  Score=47.44  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -.|+|.|++|+|||+|++++...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999988763

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.04  E-value=0.012  Score=49.44  Aligned_cols=24  Identities=33%  Similarity=0.518  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-+++|+|+||+|||++++.+...
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999987653

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.00  E-value=0.013  Score=50.33  Aligned_cols=22  Identities=32%  Similarity=0.452  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      -.++|+|++|+|||||++.+.+
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998875

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.99  E-value=0.015  Score=42.25  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      ++|+|.++||||+|...|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999998854

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.99  E-value=0.014  Score=49.22  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-|+|+|++|+|||+|++++.+
T Consensus        50 ~gvLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3499999999999999999886

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.98  E-value=0.016  Score=46.52  Aligned_cols=22  Identities=36%  Similarity=0.534  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -|+|+|++|||||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.97  E-value=0.016  Score=52.94  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEF   39 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~   39 (223)
                      .++|+|+.|+|||||++.|.++.+
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            479999999999999999987654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.96  E-value=0.017  Score=43.77  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ..|+|.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999988753

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=94.95  E-value=0.014  Score=47.16  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ....|+|.|++|+|||+|++++..
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.93  E-value=0.016  Score=46.03  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-|+|+|++|||||+|...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            35789999999999999988653

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.88  E-value=0.015  Score=47.20  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|.|++|+|||++++.+..
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.86  E-value=0.016  Score=46.91  Aligned_cols=25  Identities=32%  Similarity=0.371  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ....|+|.|+||+|||++++.+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-53
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-51
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-51
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-49
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-49
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-48
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-48
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-46
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	8e-46
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-45
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	9e-45
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	6e-44
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-41
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	6e-40
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-38
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	4e-38
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	8e-38
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-35
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-35
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-34
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	6e-34
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-33
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	6e-33
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	7e-33
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	7e-33
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	9e-33
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-32
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	4e-32
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-32
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-31
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-30
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	6e-30
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-30
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-29
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-29
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	8e-29
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-28
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-27
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-27
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-26
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-25
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-25
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-25
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-25
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-24
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	3e-24
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-23
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	9e-23
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	7e-22
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-21
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-20
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	8e-20
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-18
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-17
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	7e-16
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-13
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-10
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	3e-07
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-04
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	0.001
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.004

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  166 bits (422), Expect = 4e-53
 Identities = 80/165 (48%), Positives = 117/165 (70%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIGDS VGK+ +L RF+ D F     STIG++F+ + ++++GK +K QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +T+AYYRGA+G +LVYDI+  ++FD+I  W+  +  H+  +V  +++GNK D+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
            D R+V+   G+ LA   G+ FMETSA  + NV  AF T+  +I 
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 168

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  163 bits (413), Expect = 1e-51
 Identities = 88/189 (46%), Positives = 131/189 (69%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFK++LIG+S VGKS LL RF+ D +  +  STIGV+F+ + ++++GK VK QIWDTA
Sbjct: 4   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 63

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR +TS+YYRG+ G ++VYD++ +++F+ +  WL E+  ++   V+ +LVGNK DL
Sbjct: 64  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 123

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQ 191
           KD R V     K  A+A  + F+ETSALDS+NV  AF T+  +I   +S++ +     K+
Sbjct: 124 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 183

Query: 192 KDSSSFNGK 200
           +D  + N K
Sbjct: 184 EDKGNVNLK 192

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (408), Expect = 4e-51
 Identities = 111/171 (64%), Positives = 138/171 (80%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTA
Sbjct: 2   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 61

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQER+R +TSAYYRGAVGALLVYDI++  T++++ RWL EL  H+D N+V +LVGNKSDL
Sbjct: 62  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 121

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
           +  R V T E +A AE   L F+ETSALDS+NV  AF+ ++TEIY I+S+K
Sbjct: 122 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 172

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (398), Expect = 1e-49
 Identities = 83/165 (50%), Positives = 112/165 (67%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
            Y+FK ++IGD  VGKS LL +F   +F  +   TIGVEF T+ ++++G+++K QIWDTA
Sbjct: 2   SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 61

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFRAVT +YYRGA GAL+VYDI+RR T++ +  WL +    ++ N V IL+GNK+DL
Sbjct: 62  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 121

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           +  R+VT  E K  AE  GL F+E SA    NV  AF     +IY
Sbjct: 122 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (398), Expect = 1e-49
 Identities = 74/164 (45%), Positives = 112/164 (68%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D+LFK+VLIG++ VGK+ L+ RF +  F P   +TIGV+F  + ++ING++VK QIWDTA
Sbjct: 3   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 62

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR++T +YYR A   +L YDI+  ++F  +  WL E+  ++   V+T+LVGNK DL
Sbjct: 63  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 122

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            + REV+    +  +EAQ ++++ETSA +S NV   F  +   +
Sbjct: 123 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  155 bits (392), Expect = 1e-48
 Identities = 82/164 (50%), Positives = 117/164 (71%), Gaps = 1/164 (0%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           + K++LIGDS VGKS LL RF  D+F P+  +TIG++F+ + +DINGK+VK QIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133
           ERFR +T+AYYRGA+G +LVYDI+  +TF +I +W   ++ H++     +LVGNKSD++ 
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
            R VT  +G+ALA+  G+ F+E+SA +  NV   F T+   I  
Sbjct: 122 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (389), Expect = 3e-48
 Identities = 77/166 (46%), Positives = 109/166 (65%), Gaps = 1/166 (0%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-KSTIGVEFQTQKMDINGKEVKAQIWDT 70
           D  FKV+L+GDS VGK+ LL RF    F   +  ST+G++F+ + +D++G +VK Q+WDT
Sbjct: 4   DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 63

Query: 71  AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
           AGQERFR+VT AYYR A   LL+YD++ + +FD+I  WL E+H ++  +V  +L+GNK D
Sbjct: 64  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 123

Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
               R V   +G+ LA+  GL FMETSA    NV  AF  +  E+ 
Sbjct: 124 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  149 bits (376), Expect = 3e-46
 Identities = 74/165 (44%), Positives = 115/165 (69%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           DY+FK+++IG+S+VGK++ L R+A D F P   ST+G++F+ + +  N K +K QIWDTA
Sbjct: 3   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQER+R +T+AYYRGA+G +L+YDI+  ++F+++  W  ++ T+S  N   +LVGNK D+
Sbjct: 63  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 122

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           +D R V++  G+ LA+  G  F E SA D+ NV   F+ +V  I 
Sbjct: 123 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (373), Expect = 8e-46
 Identities = 89/171 (52%), Positives = 117/171 (68%)

Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + ++I+GK++K QIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
           QE FR++T +YYRGA GALLVYDI+RR+TF+ +  WL +   HS  N+V +L+GNKSDL+
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
             R+V   EG+A A   GL FMETSA  + NV  AF     EIY  + + +
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 172

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (369), Expect = 4e-45
 Identities = 66/183 (36%), Positives = 115/183 (62%), Gaps = 11/183 (6%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------- 61
           DYL K++ +GDS VGK+  L R+  ++F P   +T+G++F+ +++  N +          
Sbjct: 3   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 62

Query: 62  EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV 121
           +V  Q+WDTAGQERFR++T+A++R A+G LL++D++ +Q+F ++  W+++L  ++     
Sbjct: 63  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 122

Query: 122 TI-LVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
            I L+GNK+DL D REV   + + LA+  G+ + ETSA    NV  A +T++  I   + 
Sbjct: 123 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 182

Query: 181 RKV 183
           + V
Sbjct: 183 QCV 185

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (366), Expect = 9e-45
 Identities = 83/166 (50%), Positives = 110/166 (66%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
           D+LFK ++IG++  GKS LL +F   +F  +S  TIGVEF ++ +++ GK VK QIWDTA
Sbjct: 3   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 62

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQERFR+VT +YYRGA GALLVYDI+ R+T++++  WL +    +  N+V IL GNK DL
Sbjct: 63  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 122

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
              REVT  E    A+   L F+ETSAL   NV  AF     +I N
Sbjct: 123 DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 6e-44
 Identities = 74/168 (44%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 11  EDYL--FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
           ED L   K+++IG+S VGKS+LL RF  D F P   +TIGV+F+ + + ++G + K  IW
Sbjct: 2   EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 69  DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
           DTAGQERFR +T +YYRGA G +LVYD++RR TF  +  WLNEL T+   N +  ++   
Sbjct: 62  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 121

Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
              K+ REV   EG   A    + F+E SA     V  AF+ +V +I 
Sbjct: 122 KIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 169

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (342), Expect = 3e-41
 Identities = 61/164 (37%), Positives = 105/164 (64%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+V +G+ +VGK++L+ RF  D F    ++TIG++F ++ M +  + ++ Q+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFR++  +Y R +  A++VYDI+   +F    +W++++ T    +V+ +LVGNK+DL D 
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178
           R+V+  EG+  A+   + F+ETSA    NV   F+ V   +  +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 164

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 6e-40
 Identities = 63/164 (38%), Positives = 94/164 (57%)

Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           Y FKVVL+G+  VGK++L+ R+  ++F     +T+G  F T+K++I GK V   IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
           QERF A+   YYR + GA+LVYDI+   +F  +  W+ EL       +   +VGNK DL+
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
             R V+  E ++ AE+ G     TSA  +  +   F  +   + 
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 2e-38
 Identities = 70/162 (43%), Positives = 102/162 (62%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+G+SAVGKS+L+ RF + +F+   +STIG  F TQ + ++   VK +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           R+ ++   YYRGA  A++VYDI+  ++F     W+ EL   +  N+V  L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           R V   E ++ A+   L FMETSA  S NV   F  +  ++ 
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 4e-38
 Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 2/163 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +KVV++G   VGKS L  +F    F      TI  +F  ++++++      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNEL-HTHSDMNVVTILVGNKSDLKD 133
           +F ++   Y +   G +LVY +  +Q+F  I    +++        V  ILVGNK DL+ 
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
            REV+++EG+ALAE  G  FMETSA   + V   F  +V ++ 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 8e-38
 Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 6/170 (3%)

Query: 11  EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDT 70
           +  LFKV+L+GD  VGKS+L+ R+  ++F      TIGVEF  + ++++G  V  QIWDT
Sbjct: 3   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 62

Query: 71  AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVG 126
           AGQERFR++ + +YRG+   LL + +   Q+F ++  W  E   ++D     +   +++G
Sbjct: 63  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122

Query: 127 NKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
           NK D+ + R+V+T E +A     G   + ETSA D++NV AAF+  V  +
Sbjct: 123 NKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 3e-35
 Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 14/179 (7%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
             + K V++GD AVGK+ LL  +A D F      T+  +     + + GK+    ++DTA
Sbjct: 7   ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 65

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
           GQE +  +    Y      L+ + +    +F ++             NV  +L+G + DL
Sbjct: 66  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 125

Query: 132 KDARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYN 177
           +D  +            +   +G+ LA+  G   ++E SAL    +   F   +  I  
Sbjct: 126 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 184

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  120 bits (302), Expect = 4e-35
 Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 2/165 (1%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++G   VGKS L  +F  DEF  + + T       +K+ ++G+EV+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEEVQIDILDTAGQ 62

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLK 132
           E + A+   Y+R   G L V+ I+  ++F +   +  + L    D NV  +LVGNKSDL+
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           D R+V+  E K  A+   + ++ETSA   +NV   F  ++ EI  
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (297), Expect = 2e-34
 Identities = 72/163 (44%), Positives = 103/163 (63%), Gaps = 3/163 (1%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+VL+G++AVGKS+++ RF  ++F  N + TIG  F TQ++ IN   VK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL---K 132
           F ++   YYR A  AL+VYD+++ Q+F     W+ ELH  +  +++  LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
             R+V   EG+ LAE +GL F ETSA    NV   F  +  +I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 6e-34
 Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 14/181 (7%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  ++F      T+  +     + I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
            +  +    Y      L+ + +    +F+++        TH       +LVG + DL+D 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 135 REV------------TTAEGKALAEA-QGLFFMETSALDSSNVTAAFQTVVTEIYNILSR 181
                          T    + LA   + + ++E SAL    +   F   +         
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 182 K 182
           K
Sbjct: 183 K 183

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  115 bits (289), Expect = 4e-33
 Identities = 58/168 (34%), Positives = 97/168 (57%), Gaps = 4/168 (2%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L KV+++GDS VGK++L+ ++   +F    K+TIG +F T+++ ++ + V  QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRW----LNELHTHSDMNVVTILVGNKS 129
           ERF+++  A+YRGA   +LV+D++   TF ++  W    L +       N   +++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           DL++ +  T            + + ETSA ++ NV  AFQT+      
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 169

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 6e-33
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
               K+V++G   VGKS L  +F +  F  +       +  T+   ++G   +  I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTA 62

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNKSD 130
           GQE F A+   Y R   G LLV+ I+ RQ+F+ +G+   ++    D +    +LVGNK+D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           L+  R+V  +E  A   +  + + E SA    NV  AF+ +V  + 
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 168

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (286), Expect = 7e-33
 Identities = 64/163 (39%), Positives = 99/163 (60%), Gaps = 5/163 (3%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           +FK+++IGDS VGK+ L  RF    F   +++TIGV+F+ + +DI+G+ +K Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 74  ERF-RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNKSDL 131
           ERF +++   YYR     + VYD++   +F S+  W+ E   H   N +  ILVGNK DL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSS---NVTAAFQTV 171
           + A +V T   +  A+   +   ETSA + +   +V A F T+
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 7e-33
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +F +  F      TI  +   ++++++ ++   +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLN-ELHTHSDMNVVTILVGNKSDLKD 133
           +F A+   Y +   G  LVY I+ + TF+ +       L      +V  ILVGNK DL+D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 134 AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
            R V   +G+ LA +     F+E+SA    NV   F  +V +I 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 9e-33
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++G   VGKS L  +  ++ F      TI   ++ Q +    +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
            + A+   Y R   G L V+ I+  ++F+ I ++  ++    D  +V  +LVGNK D   
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA 121

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
           AR V + + + LA + G+ ++ETSA     V  AF T+V EI 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (285), Expect = 1e-32
 Identities = 67/163 (41%), Positives = 97/163 (59%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            KV L+GD+ VGKS+++ RF  D F PN   TIG  F T+ +    +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           RFRA+   YYRG+  A++VYDI++ +TF ++  W+ EL  H   ++V  + GNK DL D 
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           REV   + K  A++    F+ETSA ++ N+   F  +   I +
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 167

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 4e-32
 Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 2/165 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +++V++G   VGKS L  +F +  F  +   TI  +  T++  I+ +  +  I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLKD 133
            F A+   Y R   G LLV+ ++ R +F+ I ++  + L          IL+GNK+DL  
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178
            R+VT  EG+ LA    + +ME SA    NV  AF  +V  I   
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 6e-32
 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 14/176 (7%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K V++GD AVGK+ LL  +  + F      T+  +  +  + ++GK V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
            +  +    Y     +L+ + +    +F+++         H   N   ILVG K DL+D 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 135 REVT------------TAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYN 177
           ++                +G A+A+  G + ++E SAL    +   F   +  +  
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  110 bits (275), Expect = 4e-31
 Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 9/165 (5%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G  A GK+ +L +    +    +  T+G   +T       K VK  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 67

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKD 133
           + R +   YY G  G + V D + R   D   + L+ +    +M    I +  NK DL D
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 134 AR---EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A    E+    G      +  +   + A     +      + +  
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (271), Expect = 1e-30
 Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +K+V++GD  VGKS L  +F +  F P+   TI  +   +  +I+ +     + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLN-ELHTHSDMNVVTILVGNKSDLKD 133
            F A+   Y R   G L+VY ++ + +F+ + R+    L      +   ILV NK DL  
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSS-NVTAAFQTVVTEIY 176
            R+VT  +GK +A    + ++ETSA D   NV   F  +V  I 
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 167

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (267), Expect = 6e-30
 Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 15/176 (8%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++GDS  GK+ LL  FA+D F  N   T+  E  T   +I+ + ++  +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD-- 133
           +  V    Y  +   L+ +DISR +T DS+ +           N   +LVG KSDL+   
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 134 ----------AREVTTAEGKALAEAQG-LFFMETSALDSSN-VTAAFQTVVTEIYN 177
                        V+  +G  +A+  G   ++E SAL S N V   F        N
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  106 bits (265), Expect = 8e-30
 Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 9/164 (5%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           +++++G  A GK+ +L +    E       T           +  K +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV----GNKSDL 131
            R +   Y++   G + V D + R+  +     L  +    ++    +LV     +  + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            +A E+T   G      +  +   T A     +      +  ++
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (264), Expect = 2e-29
 Identities = 55/170 (32%), Positives = 104/170 (61%), Gaps = 7/170 (4%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEV-KAQIWDTAG 72
           + KV+++GDS VGK++L+ R+  D++    K+TIG +F T+++ ++G +V   Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 73  QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN----VVTILVGNK 128
           QERF+++  A+YRGA   +LVYD++   +F++I  W +E   H+++N       +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 129 SDLKDAREVTTAEGKAL--AEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
            D ++++++ + +           +    TSA ++ NV  AF+ +     
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 3e-29
 Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 14/174 (8%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K+V++GD A GK+ LL   ++D+F      T+  E     ++++GK+V+  +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
            +  +    Y      L+ + I    + ++I         H   NV  ILVGNK DL++ 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 135 REV------------TTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 175
                             EG+ +A   G F +ME SA     V   F+      
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (259), Expect = 8e-29
 Identities = 58/161 (36%), Positives = 97/161 (60%), Gaps = 1/161 (0%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K+V++G+ AVGKS+++ R+ +  F  + K TIGV+F  +++ +N ++V+  +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135
           F A+T AYYRGA   +LV+  + R++F++I  W  ++      ++ T LV NK DL D  
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 122

Query: 136 EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
            +   E + LA+   L F  TS  +  NV+  F+ +  +  
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 3e-28
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 3/163 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           ++V + G   VGKS+L+ RF +  F  +   T+  +   Q +  +      QI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-EDTYRQVISCDKSICTLQITDTTGSH 61

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLK 132
           +F A+           +LVY I+ RQ+ + +     ++        ++  +LVGNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            +REV ++E +ALA      FMETSA  + NV   FQ ++   
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  101 bits (253), Expect = 1e-27
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 9/165 (5%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L R    E    +K TIG   +T       K +K  +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQT 72

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
             R     YY      + V D + +    +  + L+ +    ++ +   ++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 134 ---AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
              A EV+        + +    + +SA+    +T     ++  I
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 2e-27
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
           +F  +   YY  A  A++++D++ R T+ ++  W  +L      N+  +L GNK D+KD 
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 122

Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           +    A+       + L + + SA  + N    F  +  ++  
Sbjct: 123 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (243), Expect = 2e-26
 Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 4/165 (2%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K+ + G + VGKS L+ RF    F      T+       +  I+ + V  +I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL-ESTYRHQATIDDEVVSMEILDTAGQE 61

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKD 133
                   + R   G +LVYDI+ R +F+ +    N L       NV  ILVGNK+DL  
Sbjct: 62  DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDS-SNVTAAFQTVVTEIYN 177
           +R+V+T EG+ LA      F E SA     N+T  F  +  E+  
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 96.2 bits (238), Expect = 1e-25
 Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            KV+++G    GK+ +L +F+ +E              +   +I     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTIL-VGNKSDLKD 133
             R+  + YY      ++V D + R+        L ++  H D+    +L   NK D+K+
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 134 A---REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
                E++        +          AL    +    + +++ +
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (236), Expect = 2e-25
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 2/162 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K+ ++G  +VGKS+L  +F   +F  +   TI     T+ + +NG+E   Q+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWL-NELHTHSDMNVVTILVGNKSDLKD 133
            +      Y     G +LVY ++  ++F+ I       L     + +  +LVGNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            R ++  EGKALAE+    F+E+SA ++      F+ ++ E 
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 95.4 bits (236), Expect = 3e-25
 Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 9/170 (5%)

Query: 10  AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
           A D   +++L+G    GK+ LL + A ++    +  T G   ++ +     +  K  +WD
Sbjct: 12  APDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSVQS----QGFKLNVWD 66

Query: 70  TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNK 128
             GQ + R    +Y+      + V D + R+ F+  G+ L EL     +  V  ++  NK
Sbjct: 67  IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126

Query: 129 SDLKDAR---EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
            DL  A    E+           +       SAL    V      V   +
Sbjct: 127 QDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 94.7 bits (234), Expect = 4e-25
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 9/167 (5%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L +F  ++       TI          +  +  K  IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
             R+    Y+    G + V D + RQ      R L  L     +     ++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 134 AREVTT---AEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           A        A       +        SA+   ++      ++ +I +
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (229), Expect = 2e-24
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 3/164 (1%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
           +KV+L+G   VGKS L   F   E     ++        + + ++G+E    ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTILVGNKSDLKD 133
             R +           ++VY ++ + +F+       +L       +V  ILVGNKSDL  
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           +REV+  EG+A A      F+ETSA    NV A F+ VV +I  
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 163

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (229), Expect = 3e-24
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDT 70
           +  ++VVLIG+  VGKS L   FA      +S    +G +   + + ++G+     + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 71  A-GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNK 128
              +     +     +     L+VY I+ R +F+       +        ++  ILVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           SDL   REV+ +EG+A A      F+ETSA    NV   F+ +V ++
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.4 bits (223), Expect = 4e-23
 Identities = 31/198 (15%), Positives = 58/198 (29%), Gaps = 43/198 (21%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K++L+G    GKS  + +        +   T G+         + + V  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQR 56

Query: 75  RFRAVTSAYYRGAVGALLVYDIS-----------RRQTFDSIGRWLNELHTHSDMNVVTI 123
             R      +      + +  +S             +  +S   +   +      N   I
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 124 LVGNKSDLKDAREVTTAEGKALAEAQG--------------------------LFFMETS 157
           L  NK DL + + + +       E  G                          ++   T 
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 158 ALDSSNVTAAFQTVVTEI 175
           A D+ N+   F  V   I
Sbjct: 177 ATDTENIRFVFAAVKDTI 194

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 9e-23
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            ++ ++GD+  GKS+L+ RF    +          E   ++M ++G+     I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSY--QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
             +          +    + D +  Q    +   L+ L       +   LVG +  +  +
Sbjct: 64  DAKFSGW--ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121

Query: 135 --REVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMI 185
             R V  A  +AL  + +   + ET A    NV   FQ V  ++  +  ++ ++
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQLL 175

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 86.3 bits (212), Expect = 7e-22
 Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 8/165 (4%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            ++ L+G    GK+  +   A  +F  +   T+G         I    V  ++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQP 58

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
           RFR++   Y RG    + + D + ++  ++    L+ L     +  +  +++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 134 A---REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A   +E+      +  + + +     S  +  N+    Q ++   
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 84.8 bits (208), Expect = 3e-21
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 9/167 (5%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            +++++G    GK+ +L R    E       T           +  K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKD 133
             R     YY      + V D   R         L  +    ++    + +  NK D++ 
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 134 AR---EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
           A    E+  + G    + +     +TSA   + +  A + +V  + +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.0 bits (204), Expect = 3e-20
 Identities = 37/200 (18%), Positives = 60/200 (30%), Gaps = 45/200 (22%)

Query: 14  LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
           L K++L+G    GKS  L +            T G+           K V  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQ 54

Query: 74  ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-----------LHTHSDMNVVT 122
              R      +      L +   S         R  N            ++     NV  
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 123 ILVGNKSDLKDAREVTTAEGKALAEAQG---------------------------LFFME 155
           IL  NK+DL + +    +      E +G                           L+   
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 156 TSALDSSNVTAAFQTVVTEI 175
           T+A+++ N+   F+ V   I
Sbjct: 175 TTAINTENIRLVFRDVKDTI 194

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.9 bits (198), Expect = 8e-20
 Identities = 27/165 (16%), Positives = 63/165 (38%), Gaps = 16/165 (9%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
           K++ +G    GK+ LL     D       +T+   +     ++    +K   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVG--------- 126
            R +   Y+    G + + D +  + FD     L+ L   +++  V  ++          
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 127 -NKSDLKDA-REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169
            ++++L+ A   + T   + +   + +     S +  +    AFQ
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.3 bits (192), Expect = 2e-18
 Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 19/141 (13%)

Query: 12  DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
               +++L+G    GKS ++ +            T G+            +V   ++D  
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRILHVVL----TSGIFETK----FQVDKVNFHMFDVG 55

Query: 72  GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----------NV 120
           GQ   R      +      + V   S            N L    ++            +
Sbjct: 56  GQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 115

Query: 121 VTILVGNKSDLKDAREVTTAE 141
             IL  NK DL   + +    
Sbjct: 116 SVILFLNKQDLLAEKVLAGKS 136

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.0 bits (183), Expect = 2e-17
 Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 46/198 (23%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K++L+G    GKS ++ +           +  G+           K++  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIVE----THFTFKDLHFKMFDVGGQR 53

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----------NVVTI 123
             R      + G    +    +S      +    +N +H    +           +   I
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 124 LVGNKSDLKDAREVTTAEGKALAEAQG--------------------------LFFMETS 157
           L  NK DL + +   +       E  G                          ++   T 
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 158 ALDSSNVTAAFQTVVTEI 175
           A D+ NV   F  V   I
Sbjct: 174 ATDTKNVQFVFDAVTDVI 191

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 70.9 bits (172), Expect = 7e-16
 Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 21/177 (11%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            K+V +G    GK+ LL     D    +  +      +     +         +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF-----TTFDLGGHI 68

Query: 75  RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
           + R V   Y     G + + D +  +        L+ L T   + NV  +++GNK D  +
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 128

Query: 134 AREV---------------TTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
           A                    +       A+ L     S L        F+ +   I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.7 bits (156), Expect = 2e-13
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 8/162 (4%)

Query: 16  KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
            V+ +G    GK+ L  R    ++     ++I       K++ N       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 76  FRAVTSAYYRGAVGALLVYDISRRQTF-DSIGRWLNELHTHSDM---NVVTILVGNKSDL 131
              +   +   A   + V D +  Q     +  +L ++   S     +   ++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 132 KDAR---EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170
             A+    +     K L   +       S LDSS+   A   
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLG 162

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.0 bits (136), Expect = 1e-10
 Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 22/214 (10%)

Query: 13  YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
           Y   +++ G    GK++LL     D   P    T+  +      D +G  V   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 73  QERFRAVTSAYYRGAVGA-----LLVYDISRRQTFDSIGRWLNELHTH----SDMNVVTI 123
             + R   S Y +           +V      +   +   +L ++ +      +  +  +
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 124 LVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
           +  NKS+L  AR  +  +    +E Q +      +L+        +       ++L    
Sbjct: 116 IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTD 175

Query: 184 MISQELKQKDSSSFNGKTVVLEGEKKEADAEPKK 217
                  +          V  EG   +      +
Sbjct: 176 GFKFANLE-------ASVVAFEGSINKRKISQWR 202

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (109), Expect = 3e-07
 Identities = 33/158 (20%), Positives = 49/158 (31%), Gaps = 17/158 (10%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA--- 71
            KVV+ G    GKS+LL   A  E    +    G      +  I+   +   I DTA   
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 72  -----GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVG 126
                 +             A   L + D +     D    W  E        +   +V 
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW-PEFIARLPAKLPITVVR 119

Query: 127 NKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNV 164
           NK+D+         E   ++E  G   +  SA     V
Sbjct: 120 NKADITG-------ETLGMSEVNGHALIRLSARTGEGV 150

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 10/164 (6%)

Query: 11  EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDT 70
            D   +V   G S  GKS+ L      +    +  T G        ++   +    +   
Sbjct: 13  SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGY 72

Query: 71  AGQ-------ERFRAVTSAYYRGAVGALLVYDISRRQTF--DSIGRWLNELHTHSDMNVV 121
                      +++     Y         +  +   +    D   + +      +   +V
Sbjct: 73  GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV 132

Query: 122 TILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNV 164
            +   +K      +       +A+    G       S+L    V
Sbjct: 133 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV 176

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 11/156 (7%)

Query: 17  VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG---- 72
           V L+G    GKS+LLA   R            +      +    +E +  + D  G    
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLS-PNLGVVEVSEEERFTLADIPGIIEG 62

Query: 73  ----QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
               +           R  V   ++             R     +  + +   +++  NK
Sbjct: 63  ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 122

Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNV 164
            DL +   V           +GL  +  SAL  + +
Sbjct: 123 VDLLEEEAV--KALADALAREGLAVLPVSALTGAGL 156

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 18/128 (14%), Positives = 32/128 (25%), Gaps = 9/128 (7%)

Query: 8   DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQ--KMDINGKEVKA 65
              +  +  V + G++  GKS+ +             +  GV   T       +      
Sbjct: 50  KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNV 109

Query: 66  QIWDTAGQERFRAVTSAY---YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVT 122
             WD  G          Y    +       +   + R   + I      +     M    
Sbjct: 110 VFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI-DIAKAIS---MMKKEF 165

Query: 123 ILVGNKSD 130
             V  K D
Sbjct: 166 YFVRTKVD 173

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 35/170 (20%), Positives = 49/170 (28%), Gaps = 14/170 (8%)

Query: 15  FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
            KV ++G   VGKS L       E    S    G        ++     K    DTAG  
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67

Query: 75  RFRAVTS--------AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVG 126
           R   V               ++    V  I    T     +              +++V 
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 127 NKSDLKDAREVTTAEGKALAEAQGLF-----FMETSALDSSNVTAAFQTV 171
           NK DL   RE    E   L   +  F      + TSA    N+      +
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAM 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.89
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.88
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.87
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.87
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.86
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.85
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.84
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.84
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.83
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.82
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.75
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.74
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.71
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.7
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.69
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.65
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.64
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.64
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.61
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.54
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.53
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.53
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.35
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.32
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.3
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.3
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.29
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.16
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.05
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.96
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.68
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.47
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.44
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.27
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.25
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.19
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.17
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.15
d1okkd2	207	GTPase domain of the signal recognition particle r	98.13
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.12
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.07
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.98
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.91
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.69
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.65
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.62
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.54
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.5
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.49
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.44
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.43
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.4
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.4
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.36
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.35
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.34
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.33
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.33
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.25
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.23
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.21
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.19
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.17
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.17
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.14
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.1
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.1
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.09
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.08
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.08
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.08
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.05
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.05
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.02
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.02
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.02
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.0
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.99
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.98
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.96
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.95
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.94
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.93
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.92
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.9
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.9
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.89
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.87
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.87
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.86
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.85
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.84
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.83
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.83
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.82
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.78
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.76
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.76
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.75
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.74
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.72
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.72
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.72
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.72
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.66
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.65
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.63
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.61
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.61
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.59
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.55
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.53
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.5
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.48
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.43
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.43
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.38
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.35
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.3
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.28
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.28
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.18
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.17
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.09
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.07
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.07
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.99
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.97
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.95
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.93
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.91
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.89
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.78
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.75
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.75
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.64
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.49
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.38
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.36
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.35
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.21
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.17
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.16
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.12
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.12
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.06
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.01
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.0
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.93
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.92
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.9
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.88
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.84
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.84
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.81
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.69
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.69
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.61
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.56
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.51
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.5
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.5
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.49
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.41
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.37
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.2
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.18
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.17
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.14
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.12
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.01
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.0
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.75
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.67
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.54
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.87
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.8
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.78
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.45
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.45
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.32
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.25
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.6
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.97
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	90.55
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.11
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.01
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.85
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.46
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.76
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	86.68
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	86.21
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	84.51
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	84.48
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	84.48
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	84.26
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	84.21
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	84.1
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	83.93
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.84
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	83.53
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.95
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	82.6
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	82.22
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	82.16
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	80.95
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	80.06

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-37  Score=226.10  Aligned_cols=168  Identities=44%  Similarity=0.789  Sum_probs=157.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      +++.+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.++++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            56789999999999999999999999999888888888899999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      ++|+|++++.+++.+..|+..+........|+++|+||+|+.+.+++..++++.+++..++++++|||++|.||+++|..
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~  161 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  161 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHH
Confidence            99999999999999999999987776668999999999999887888999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027417          171 VVTEIYNI  178 (223)
Q Consensus       171 l~~~~~~~  178 (223)
                      |++++...
T Consensus       162 l~~~l~~~  169 (171)
T d2ew1a1         162 LACRLISE  169 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99888654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.5e-37  Score=224.74  Aligned_cols=167  Identities=44%  Similarity=0.798  Sum_probs=155.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      +++.+||+|+|++|||||||+++|.++.+...+.++.+.+.....+...+..+.+.+|||||++.+..++..+++.+|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            46789999999999999999999999998888888888899888888999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |+|||+++++++..+..|+..+........|+++|+||+|+.+.+.++.++++.+++..++++++|||++|.||+++|++
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  161 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  161 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999999998887776668999999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027417          171 VVTEIYN  177 (223)
Q Consensus       171 l~~~~~~  177 (223)
                      |++.+++
T Consensus       162 l~~~i~e  168 (169)
T d3raba_         162 LVDVICE  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9987754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-37  Score=225.61  Aligned_cols=162  Identities=36%  Similarity=0.648  Sum_probs=152.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+|+|++|||||||+++|.++.+...+.+|.+.+.........+..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999999888899999888888888999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      ||++++.+++.+..|+..+..... ++|+++|+||+|+.+.+.+..++++.+++.++++|+++||++|.||+++|+.|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCC-CceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            999999999999999999876644 6999999999999888889999999999999999999999999999999999998


Q ss_pred             HHH
Q 027417          174 EIY  176 (223)
Q Consensus       174 ~~~  176 (223)
                      +++
T Consensus       161 ~~l  163 (164)
T d1z2aa1         161 KHL  163 (164)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=222.50  Aligned_cols=165  Identities=50%  Similarity=0.884  Sum_probs=154.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ++.+||+|+|++|||||||++++.++.+...+.++.+.+.......+++..+.+.+||++|++.+..++..+++.+|++|
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            57899999999999999999999999998888888888888888999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|||+++.+|++.+..|+..+........|+++++||+|+........++++.+++..++++++|||++|.||+++|+.|
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i  161 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  161 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887777789999999999998878888999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027417          172 VTEIY  176 (223)
Q Consensus       172 ~~~~~  176 (223)
                      +++++
T Consensus       162 ~~~i~  166 (166)
T d1z0fa1         162 AKKIY  166 (166)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98763

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-37  Score=225.74  Aligned_cols=165  Identities=38%  Similarity=0.694  Sum_probs=148.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      +.+||+|+|++|||||||++++.++.+...+.++.+.+........++..+.+.+||++|.+.+..++..+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            57999999999999999999999999999999998989999898889999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      |||+++++||+.+..|+..+........|+++|+||+|+...+.++.++++.+++.++++|++|||++|.||+++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999888766666789999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027417          173 TEIYN  177 (223)
Q Consensus       173 ~~~~~  177 (223)
                      +++++
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            88753

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=223.19  Aligned_cols=169  Identities=31%  Similarity=0.484  Sum_probs=152.5

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      ++...+||+|+|++|||||||+++|.++.+...+.++ ..+.....+.+++..+.+.+||++|.+.+...+..+++.+|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t-~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPT-IEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTT-CCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccc-cccceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            4566799999999999999999999999988877777 455666778889999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      +|+|||++++.||+.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..+++..+++|++|||++|.||+++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999987653 44578999999999998878889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          169 QTVVTEIYNIL  179 (223)
Q Consensus       169 ~~l~~~~~~~~  179 (223)
                      +.|++.+.++.
T Consensus       161 ~~l~~~i~k~~  171 (173)
T d2fn4a1         161 EQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999886543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=220.99  Aligned_cols=165  Identities=30%  Similarity=0.372  Sum_probs=134.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+|+|++|||||||++++.+..+.. ..++ +.......+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCC-cCCe-eeeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            3799999999999999999999876533 3333 4444556777899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ||++++.+++.+..|+..+... ....+|+++|+||+|+.+.++++.++++.+++.++++|++|||++|.|++++|+.|+
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            9999999999999999998665 345689999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 027417          173 TEIYNILS  180 (223)
Q Consensus       173 ~~~~~~~~  180 (223)
                      +.+..++.
T Consensus       159 ~~i~~~~~  166 (168)
T d2gjsa1         159 RQIRLRRD  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            88766554

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-36  Score=221.02  Aligned_cols=171  Identities=65%  Similarity=1.041  Sum_probs=156.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ++.+||+|+|++|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++.+|++|
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            57899999999999999999999999998888888888888888889999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      +|||.+++.||+.+..|+..+......+.|+++|+||+|+.+.+....+.+..+....+.++++|||++|.|++++|+.|
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999999988877789999999999998877778888889999999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 027417          172 VTEIYNILSRK  182 (223)
Q Consensus       172 ~~~~~~~~~~~  182 (223)
                      ++.+++.+.++
T Consensus       162 ~~~i~~~~~~~  172 (175)
T d2f9la1         162 LTEIYRIVSQK  172 (175)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHhhhc
Confidence            99998776654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-36  Score=221.24  Aligned_cols=170  Identities=49%  Similarity=0.809  Sum_probs=158.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      +++.+||+|+|++|||||||+++|..+.+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.+|++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            56789999999999999999999999999888888888888888888899999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |+|||.+++++++.+..|+..+......++|+++|+||+|+....+...+++..++...+++|++|||++|.|++++|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~  161 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHH
Confidence            99999999999999999999988777778999999999999887888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027417          171 VVTEIYNILS  180 (223)
Q Consensus       171 l~~~~~~~~~  180 (223)
                      |++.+.+++.
T Consensus       162 l~~~i~~~~~  171 (174)
T d2bmea1         162 CARKILNKIE  171 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-36  Score=220.80  Aligned_cols=169  Identities=53%  Similarity=0.906  Sum_probs=153.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      +.+||+|+|++|||||||++++.++.+...+.++.+.+.........+..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            56899999999999999999999999888888887888888888888899999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      |||++++.+|+.+..|+..+......++|++||+||+|+...+.+..+++..+++..+++|++|||++|.||+++|..|+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999998877777899999999999988788899999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 027417          173 TEIYNILSR  181 (223)
Q Consensus       173 ~~~~~~~~~  181 (223)
                      +.+++.+.+
T Consensus       162 ~~i~~~~~~  170 (173)
T d2a5ja1         162 KEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            998876654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.1e-36  Score=218.01  Aligned_cols=163  Identities=41%  Similarity=0.716  Sum_probs=153.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..+||+|+|++|||||||+++|..+.+...+.++.+...........+....+.+||++|++.+..++..+++.+|++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            46899999999999999999999999999999998888888888888899999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      |||++++++|+.+..|+..+........|+++|+||+|+.+.+.+..++++.+++..+++|++|||++|.||+++|..|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999888877777899999999999988888999999999999999999999999999999999998


Q ss_pred             HHH
Q 027417          173 TEI  175 (223)
Q Consensus       173 ~~~  175 (223)
                      +++
T Consensus       163 ~~i  165 (167)
T d1z0ja1         163 RRI  165 (167)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-35  Score=221.42  Aligned_cols=175  Identities=48%  Similarity=0.814  Sum_probs=162.0

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      +.++.+||+|+|++|||||||+++|+++.+...+.++.+.+.....+.+.+..+.+.+|||+|++.+..++..+++.+|+
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            56788999999999999999999999999888888998988888888999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      +|+|||++++.++..+..|+..+........|+++|+||+|+.+...+..+++..++...++.|+++||++|.|++++|+
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            99999999999999999998888776667899999999999998888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 027417          170 TVVTEIYNILSRKVM  184 (223)
Q Consensus       170 ~l~~~~~~~~~~~~~  184 (223)
                      .|++.+.+...++..
T Consensus       162 ~l~~~i~~~~~~~~~  176 (194)
T d2bcgy1         162 TMARQIKESMSQQNL  176 (194)
T ss_dssp             HHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHhhhccc
Confidence            999988776655544

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-36  Score=219.43  Aligned_cols=161  Identities=38%  Similarity=0.744  Sum_probs=151.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+|+|++|||||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999998898999888888888888889999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      |++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++.++++|++|||++|.||+++|++|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999877766689999999999998878889999999999999999999999999999999999986


Q ss_pred             H
Q 027417          175 I  175 (223)
Q Consensus       175 ~  175 (223)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.1e-36  Score=218.18  Aligned_cols=164  Identities=33%  Similarity=0.510  Sum_probs=148.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      +.+||+++|++|||||||++++.++.+.+.+.++.+.. ....+.+++..+.+.+||++|.+.+...+..+++.+|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            46899999999999999999999998888888886644 45566789999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC-CHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS-NVTAAFQT  170 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~  170 (223)
                      |||++++.||+.+..|+..+.+. .....|+|+|+||+|+.+.+.++.++++++++.++++|++|||+++. ||+++|+.
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            99999999999999999998655 45579999999999999888999999999999999999999999885 99999999


Q ss_pred             HHHHHHH
Q 027417          171 VVTEIYN  177 (223)
Q Consensus       171 l~~~~~~  177 (223)
                      |++.+.+
T Consensus       162 l~~~i~~  168 (169)
T d1x1ra1         162 LVRVIRQ  168 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-36  Score=218.46  Aligned_cols=164  Identities=31%  Similarity=0.484  Sum_probs=149.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...+||+|+|++|||||||+++|.++.+...+.+|.+.++ ...+.+++..+.+.+||++|.+.+..++..+++.+|++|
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            3568999999999999999999999988888888877664 466778999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      +|||++++++|+.+..|+..+... ...+.|+++|+||+|+...+.++.++++.+++.++++|++|||++|.||+++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999999999888654 4557999999999999887889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027417          171 VVTEIY  176 (223)
Q Consensus       171 l~~~~~  176 (223)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=6.6e-36  Score=218.72  Aligned_cols=163  Identities=36%  Similarity=0.567  Sum_probs=146.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      +.+||+|+|++|||||||+++++.+.+...+.+|.+.++ ...+.+++..+.+.+||++|.+.+..++..+++.+|++|+
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            468999999999999999999999998888888877655 4566789999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      |||++++.+++.+..|+..+.+. ...+.|+++|+||+|+.+.+.++.++++.+++.++++|++|||++|.||+++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999999998664 45579999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027417          172 VTEIY  176 (223)
Q Consensus       172 ~~~~~  176 (223)
                      ++++.
T Consensus       162 ~~~i~  166 (168)
T d1u8za_         162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98774

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.7e-36  Score=219.69  Aligned_cols=170  Identities=47%  Similarity=0.841  Sum_probs=129.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .++.+||+|+|.+|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            46789999999999999999999999888888888988899999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |+|||++++.+++.+..|+..+......+.|+++|+||.|+...+....+++..++...+++|++|||++|.||+++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~  162 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  162 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999987777778999999999999987888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027417          171 VVTEIYNILS  180 (223)
Q Consensus       171 l~~~~~~~~~  180 (223)
                      |++.+.+++.
T Consensus       163 l~~~i~~k~~  172 (173)
T d2fu5c1         163 LARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcC
Confidence            9998866654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-36  Score=221.33  Aligned_cols=171  Identities=38%  Similarity=0.707  Sum_probs=151.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECC----------EEEEEEEEeCCCchhhhchh
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING----------KEVKAQIWDTAGQERFRAVT   80 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~D~~G~~~~~~~~   80 (223)
                      +++.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++          ..+.+.+|||+|++.+..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            57789999999999999999999999988887777777776666655432          35779999999999999999


Q ss_pred             HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027417           81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL  159 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (223)
                      ..+++.+|++|+|||++++.+++.+..|+..+... .....|+++|+||+|+.+.+++..+++..+++.++++|++|||+
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak  161 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  161 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCC
Confidence            99999999999999999999999999999887654 34568899999999999888899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhh
Q 027417          160 DSSNVTAAFQTVVTEIYNILSR  181 (223)
Q Consensus       160 ~~~~i~~~~~~l~~~~~~~~~~  181 (223)
                      +|.||+++|++|++.+.++..+
T Consensus       162 ~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         162 TGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999988776554

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-35  Score=214.06  Aligned_cols=163  Identities=34%  Similarity=0.525  Sum_probs=144.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+|+|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|...+...+..+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            48999999999999999999999988888888855 55667778899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      ||++++.||+.+..|+..+... .....|+|+|+||+|+.+.+.+..+++..+++.++++|++|||++|.||+++|+.|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            9999999999999999876544 445789999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027417          173 TEIYN  177 (223)
Q Consensus       173 ~~~~~  177 (223)
                      +.+.+
T Consensus       164 ~~i~k  168 (171)
T d2erya1         164 RVIRK  168 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87743

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-35  Score=213.93  Aligned_cols=163  Identities=43%  Similarity=0.731  Sum_probs=153.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+...+..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            35899999999999999999999999988989999999888888889999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      |+|++++.+++.+..|+..+.+....+.|+++|+||+|+...+.++.++++.+++..+++|++|||++|.||+++|+.|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999998777777899999999999988888999999999999999999999999999999999998


Q ss_pred             HHH
Q 027417          173 TEI  175 (223)
Q Consensus       173 ~~~  175 (223)
                      +++
T Consensus       165 ~~i  167 (170)
T d1r2qa_         165 KKL  167 (170)
T ss_dssp             HTS
T ss_pred             HHH
Confidence            765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-35  Score=213.97  Aligned_cols=164  Identities=34%  Similarity=0.466  Sum_probs=143.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+|+|++|||||||+++++++.+...+.||.+.++.. .+..++..+.+.+||++|.+.+. ....+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            4899999999999999999999999988889998876644 44578899999999999987764 556688999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC-CHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHT-HSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS-NVTAAFQTV  171 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l  171 (223)
                      ||++++.+|+.+..|+..+.. ....+.|+++|+||+|+.+.+.++.++++.+++.++++|++|||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999999988776543 344579999999999998878899999999999999999999999998 599999999


Q ss_pred             HHHHHHHH
Q 027417          172 VTEIYNIL  179 (223)
Q Consensus       172 ~~~~~~~~  179 (223)
                      ++.+.+++
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            98886654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-35  Score=217.49  Aligned_cols=165  Identities=27%  Similarity=0.493  Sum_probs=144.0

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      +....+||+|+|++|||||||+++|+.+.+...+.+|.+ +.....+...+..+.+.+||++|++.+...+..+++.+|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            467789999999999999999999999998888888876 4456666778889999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHH-HHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcC-CeEEE
Q 027417           90 ALLVYDISRRQTFDSIGR-WLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQG-LFFME  155 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~  155 (223)
                      +++|||+++++||+.+.. |...+... ..+.|+++|+||+|+.+            .+.++.+++.++++.++ ++|++
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E  162 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  162 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEE
Confidence            999999999999998765 55555544 44799999999999864            35688999999999987 68999


Q ss_pred             EccCCCCCHHHHHHHHHHHHH
Q 027417          156 TSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       156 ~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      |||++|.||+++|+.++++++
T Consensus       163 ~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         163 CSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             ecCCCCcCHHHHHHHHHHHHc
Confidence            999999999999999988763

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=216.63  Aligned_cols=161  Identities=30%  Similarity=0.409  Sum_probs=143.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+|+|++|||||||+++|+++.+...+.+|.+..+ .....+++..+.+.+||++|.+.+...+..+++.+|++|+|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            58999999999999999999999998888888877554 44566888999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTH--SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      ||++++++++.+..|+..+...  ...++|+++|+||+|+...++++.++++.+++.++++|++|||++|.||+++|+.|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999998887543  33578999999999998888899999999999999999999999999999999998


Q ss_pred             HHHH
Q 027417          172 VTEI  175 (223)
Q Consensus       172 ~~~~  175 (223)
                      ++.+
T Consensus       161 ~~~~  164 (171)
T d2erxa1         161 LNLE  164 (171)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8644

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-35  Score=213.08  Aligned_cols=163  Identities=44%  Similarity=0.757  Sum_probs=150.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      +.+||+|+|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+||++|.+.+..++..++..+|++|+
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            46899999999999999999999999999999999988888889999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC---CcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD---AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      |||++++.+|+.+..|+..+........|+++|+||+|+.+   .+.+..++++.+++..+++|++|||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888777676899999999999854   367889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027417          170 TVVTEI  175 (223)
Q Consensus       170 ~l~~~~  175 (223)
                      .|++++
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            987653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-35  Score=213.09  Aligned_cols=163  Identities=35%  Similarity=0.555  Sum_probs=147.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..+||+|+|++|||||||+++|+++.+...+.++.+ +.......+++..+.+.+||++|.+.+...+..+++.+|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            468999999999999999999999998888888766 4556677789999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      |||++++.+|+.+..|+..+... ...+.|++||+||+|+.+.+.+..++++.+++.++++|++|||++|.||+++|+.|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            99999999999999999887654 34578999999999998878889999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027417          172 VTEIY  176 (223)
Q Consensus       172 ~~~~~  176 (223)
                      ++++.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            88763

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=213.27  Aligned_cols=162  Identities=30%  Similarity=0.435  Sum_probs=141.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      ..||+|+|++|||||||+++|..+.+...+.+|.+ +.......+++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999999888888866 45556677888999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027417           94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALD  160 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (223)
                      ||++++.||+.+..|+..+......+.|++||+||+|+.+.            +.++.++++.+++.++. +|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999876554443333347999999999998642            45788999999999985 799999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEIY  176 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~~  176 (223)
                      |.||+++|+.+++.++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-34  Score=210.78  Aligned_cols=166  Identities=46%  Similarity=0.775  Sum_probs=143.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPN-SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      ++..+||+|+|+++||||||+++++.+.+... +.++.+.+.....+...+..+.+.+|||+|++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            57789999999999999999999999887544 34556778888888899999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      +++|||++++.++..+..|+..+........|+++|+||+|+.....+..+++..+++..+++|++|||++|.||+++|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999998888777666899999999999998888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027417          170 TVVTEIY  176 (223)
Q Consensus       170 ~l~~~~~  176 (223)
                      +|++.+.
T Consensus       163 ~l~~~i~  169 (170)
T d2g6ba1         163 AIAKELK  169 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=211.00  Aligned_cols=163  Identities=32%  Similarity=0.510  Sum_probs=146.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      +.+||+|+|++|||||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|.+.+...+..+++.+|++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            468999999999999999999999999888888876554 4556678889999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |||++++.||+.+..|+..+.+. .....|+++|+||+|+...+....+++..+++.. +++|++|||++|.||+++|++
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            99999999999999999988654 4457999999999999988888999999998874 789999999999999999999


Q ss_pred             HHHHHH
Q 027417          171 VVTEIY  176 (223)
Q Consensus       171 l~~~~~  176 (223)
                      |++++.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998763

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-34  Score=210.94  Aligned_cols=164  Identities=50%  Similarity=0.855  Sum_probs=146.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  173 (223)
                      ||.+++.+++.+..|+..+........|++++++|.|+.. +....++++.++..+++++++|||++|.||+++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999999888877777889999999999765 567789999999999999999999999999999999998


Q ss_pred             HHHHH
Q 027417          174 EIYNI  178 (223)
Q Consensus       174 ~~~~~  178 (223)
                      .+.++
T Consensus       161 ~i~~k  165 (166)
T d1g16a_         161 LIQEK  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            87654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-34  Score=211.98  Aligned_cols=160  Identities=24%  Similarity=0.389  Sum_probs=139.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+|+|++|||||||+++|..+.+...+.+|.+. .........+..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            589999999999999999999999998888888764 4455666788999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHH-HHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcC-CeEEEEccC
Q 027417           94 YDISRRQTFDSIGRW-LNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQG-LFFMETSAL  159 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~-~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~  159 (223)
                      ||+++++||+++..| ...+... ..+.|+++|+||+|+.+            .+.+..++++.++...+ ++|++|||+
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            999999999999765 4444444 44799999999999853            24588999999998865 789999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027417          160 DSSNVTAAFQTVVTEI  175 (223)
Q Consensus       160 ~~~~i~~~~~~l~~~~  175 (223)
                      +|.||+++|+.+++.+
T Consensus       161 ~~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         161 TQKGLKNVFDEAILAA  176 (191)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999999988655

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-34  Score=207.45  Aligned_cols=162  Identities=33%  Similarity=0.532  Sum_probs=145.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      +.+||+|+|++|||||||+++|+++.+...+.++.+..+... +...+..+.+.+||++|.+.+...+..+++.++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            358999999999999999999999998888888877665544 5578888999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV  171 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  171 (223)
                      |||++++.+|+.+..|+..+... ...++|+++|+||+|+.. +.+..++++.+++.++++|++|||++|.||+++|+.|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999999998765 344689999999999865 5678899999999999999999999999999999999


Q ss_pred             HHHHH
Q 027417          172 VTEIY  176 (223)
Q Consensus       172 ~~~~~  176 (223)
                      ++++.
T Consensus       160 ~~~i~  164 (166)
T d1ctqa_         160 VREIR  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98774

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=217.00  Aligned_cols=162  Identities=30%  Similarity=0.546  Sum_probs=141.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      -.+||+|+|++|||||||+++|+++.+...+.+|.+.++....+..++..+.+.+||++|+..+..++..+++.+|++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            35899999999999999999999999988888999988888888888899999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV  172 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  172 (223)
                      |||+++++||+.+..|+..+..... +.|+++|+||+|+...+.  .+++..++...+++|++|||++|.||+++|++|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~--~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHHC-SCCEEEEEECCCCSCSCC--TTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHhhccC-CCceeeecchhhhhhhhh--hhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999998876643 799999999999976543  3445678888999999999999999999999999


Q ss_pred             HHHHH
Q 027417          173 TEIYN  177 (223)
Q Consensus       173 ~~~~~  177 (223)
                      +.+++
T Consensus       159 ~~l~~  163 (170)
T d1i2ma_         159 RKLIG  163 (170)
T ss_dssp             HHHHT
T ss_pred             HHHcc
Confidence            88753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=207.84  Aligned_cols=167  Identities=46%  Similarity=0.800  Sum_probs=152.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      ..+.+||+|+|++|||||||+++|.++.+...+.++.+.......+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus         4 ~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~i   83 (177)
T d1x3sa1           4 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   83 (177)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             ccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            35679999999999999999999999999888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ  169 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  169 (223)
                      |+|||++++.+++.+..|+..+.... ....|+++++||.|... +.+..++++.+++.++++|++|||++|.|++++|+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~  162 (177)
T d1x3sa1          84 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE  162 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999987653 44688889999999764 67889999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027417          170 TVVTEIYNI  178 (223)
Q Consensus       170 ~l~~~~~~~  178 (223)
                      +|++.+++.
T Consensus       163 ~l~~~l~~~  171 (177)
T d1x3sa1         163 ELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHccC
Confidence            999888654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-34  Score=208.70  Aligned_cols=164  Identities=29%  Similarity=0.395  Sum_probs=140.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCC---chhhhchhHhhhcCCC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAG---QERFRAVTSAYYRGAV   88 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G---~~~~~~~~~~~~~~~d   88 (223)
                      +.+||+|+|++|||||||+++|.+..+.. ...++++.+.....+.+++..+.+.+||+++   ++++  ++..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            56899999999999999999999876543 4445667777888888999999999999875   3333  5667889999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027417           89 GALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      ++|+|||++++.+++.+..|+..+... ...++|+++|+||+|+.+.++++.++++.++..++++|++|||++|.||+++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            999999999999999999999888654 3457999999999999888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          168 FQTVVTEIYNI  178 (223)
Q Consensus       168 ~~~l~~~~~~~  178 (223)
                      |+.|++++..+
T Consensus       160 f~~l~~~i~~r  170 (172)
T d2g3ya1         160 FEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999987554

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-33  Score=204.33  Aligned_cols=160  Identities=40%  Similarity=0.720  Sum_probs=144.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc-hhHhhhcCCCEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA-VTSAYYRGAVGAL   91 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~i   91 (223)
                      +.+||+|+|++|||||||+++|.++.+...+.++.+.........+......+.+||++|...+.. .+..+++++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            368999999999999999999999999888888888888888888999999999999999877654 5677899999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC---CCCHHHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD---SSNVTAA  167 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~  167 (223)
                      +|||++++++|+.+..|+..+... ...++|++|||||+|+.+.+.++.++++.+++.++++|++|||++   +.||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            999999999999999999998665 445799999999999988888999999999999999999999987   5699999


Q ss_pred             HHHHH
Q 027417          168 FQTVV  172 (223)
Q Consensus       168 ~~~l~  172 (223)
                      |++|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-32  Score=202.75  Aligned_cols=165  Identities=38%  Similarity=0.695  Sum_probs=145.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      +.+.+||+|+|++|||||||+++|.++.+...+.++.+...........+..+.+.+||++|.......+...+..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            35678999999999999999999999999888888888888888888899999999999999999989999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHhhc----CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHH
Q 027417           91 LLVYDISRRQTFDSIGRWLNELHTH----SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVT  165 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~  165 (223)
                      ++++|.+++.+++.+..|+..+...    .....|+++|+||+|+.+ +.+..++++.+++.. +++|++|||++|.||+
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHH
Confidence            9999999999999999999887543    234689999999999865 678999999999876 4789999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          166 AAFQTVVTEIY  176 (223)
Q Consensus       166 ~~~~~l~~~~~  176 (223)
                      ++|+.|+++++
T Consensus       162 e~f~~l~~~il  172 (174)
T d1wmsa_         162 AAFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-33  Score=208.16  Aligned_cols=163  Identities=29%  Similarity=0.508  Sum_probs=141.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA   90 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   90 (223)
                      .+..+||+|+|++|||||||+++|+.+.+...+.+|.+. .....+..++..+.+.+||++|++.+...+..+++.+|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceee-ceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            356799999999999999999999999988888888764 4456677899999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHH-HHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CeEEEE
Q 027417           91 LLVYDISRRQTFDSIGR-WLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQG-LFFMET  156 (223)
Q Consensus        91 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~  156 (223)
                      |+|||++++.||+.+.. |...+..+. .+.|+++|+||+|+.+.            ......++..+++.++ ++|++|
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~  159 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHhC-CCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEc
Confidence            99999999999999976 555555544 47999999999997542            3456778888998887 789999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 027417          157 SALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       157 Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ||++|.||+++|+.|++.+
T Consensus       160 SAk~~~~V~e~F~~l~~~i  178 (183)
T d1mh1a_         160 SALTQRGLKTVFDEAIRAV  178 (183)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHHHHHHHH
Confidence            9999999999999999876

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-33  Score=206.73  Aligned_cols=166  Identities=35%  Similarity=0.651  Sum_probs=131.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEE-CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      .+||+|+|++|||||||+++|+++.+...+.++.+.......... +...+.+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            589999999999999999999999988888877776666655544 3455778999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc----CCCCCcEEEEEeCCCCCCCc-ccCHHHHHHHHHHcC-CeEEEEccCCCCCHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH----SDMNVVTILVGNKSDLKDAR-EVTTAEGKALAEAQG-LFFMETSALDSSNVTA  166 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~  166 (223)
                      |||++++.||+.+..|+..+...    ...++|+++|+||+|+.+.+ .++.++++++++.++ ++|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            99999999999999999887543    23478999999999998654 367889999999886 7899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027417          167 AFQTVVTEIYNIL  179 (223)
Q Consensus       167 ~~~~l~~~~~~~~  179 (223)
                      +|++|++.++++.
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887653

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.4e-33  Score=207.08  Aligned_cols=170  Identities=36%  Similarity=0.643  Sum_probs=150.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+|+|.+|||||||+++|+++.+...+.+|.+.+.........+..+.+.+||++|...+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999999988899999999898888899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhcC----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCeEEEEccCCCCCHHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTHS----DMNVVTILVGNKSDLKDAREVTTAEGKALAEA-QGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      +|.+++.+++.+..|+..+....    ....|+++|+||+|+.+ +++..++...++.. .+++|++|||++|.||+++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            99999999999999998875542    23589999999999876 55677777777654 57899999999999999999


Q ss_pred             HHHHHHHHHHHhhhhh
Q 027417          169 QTVVTEIYNILSRKVM  184 (223)
Q Consensus       169 ~~l~~~~~~~~~~~~~  184 (223)
                      ++|++.++++..+...
T Consensus       161 ~~l~~~i~~~~~~~~~  176 (184)
T d1vg8a_         161 QTIARNALKQETEVEL  176 (184)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccc
Confidence            9999998887665543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-32  Score=203.24  Aligned_cols=162  Identities=32%  Similarity=0.492  Sum_probs=140.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      ..||+|+|++|||||||++++..+.+...+.++.+ ........+++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47999999999999999999999999888888865 44455667788999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHH-HhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEEccC
Q 027417           94 YDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFMETSAL  159 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~-i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  159 (223)
                      ||+++++||+.+..|+.. +.... .+.|+++||||+|+..            .+.++.+++..+++..+. +|++|||+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk  159 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  159 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCC
Confidence            999999999998765544 44444 4799999999999853            356889999999998874 79999999


Q ss_pred             CCC-CHHHHHHHHHHHHHH
Q 027417          160 DSS-NVTAAFQTVVTEIYN  177 (223)
Q Consensus       160 ~~~-~i~~~~~~l~~~~~~  177 (223)
                      +|. +++++|+.+++.+++
T Consensus       160 ~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         160 QSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             TBHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            998 599999999988764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-31  Score=195.73  Aligned_cols=165  Identities=22%  Similarity=0.339  Sum_probs=137.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      +.+||+++|++|||||||+++++++.+.. ..++.+ +.....+.+++..+.+.+||++|+..+     .+++.+|++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            46999999999999999999999988754 344434 444666788999999999999997654     46788999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHhhc---CCCCCcEEEEEeCCCCCC--CcccCHHHHHHHHHH-cCCeEEEEccCCCCCHHH
Q 027417           93 VYDISRRQTFDSIGRWLNELHTH---SDMNVVTILVGNKSDLKD--AREVTTAEGKALAEA-QGLFFMETSALDSSNVTA  166 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~  166 (223)
                      |||++++.||+.+..|+..+...   .....|+++|+||.|+..  .+.++.++++.++.. .+++|++|||++|.|+++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            99999999999999998887543   345679999999888753  466788899888655 578899999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 027417          167 AFQTVVTEIYNILSRKVM  184 (223)
Q Consensus       167 ~~~~l~~~~~~~~~~~~~  184 (223)
                      +|..|++++.+...++.+
T Consensus       157 ~F~~l~~~i~~~~~~~~l  174 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQQQL  174 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccc
Confidence            999999999888876643

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=4.4e-31  Score=192.08  Aligned_cols=155  Identities=21%  Similarity=0.379  Sum_probs=127.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+|+|++|||||||+++|.++.+...+.+|.+.++..  +...  .+.+.+||+||+..+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eeee--eEEEEEeeccccccccccccccccccchhhcc
Confidence            5899999999999999999999999888888887765543  3334  47888999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHH-----HHHHcCCeEEEEccCCCCCHHHH
Q 027417           94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKA-----LAEAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      ||+++..+++....|+..+... ...+.|+++|+||.|+.+...  ..+..+     .+...+++++++||++|.|++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh--HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            9999999999998888776443 445799999999999875422  222222     22334567999999999999999


Q ss_pred             HHHHHHH
Q 027417          168 FQTVVTE  174 (223)
Q Consensus       168 ~~~l~~~  174 (223)
                      |++|++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9998864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=2.4e-30  Score=190.15  Aligned_cols=161  Identities=24%  Similarity=0.356  Sum_probs=125.4

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcC
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG   86 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   86 (223)
                      .....+..+||+++|++|||||||+++|.++.+... .++.+.+.  ..+...+  +.+.+||++|++.+...+..+++.
T Consensus         9 ~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~~--~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~   83 (176)
T d1fzqa_           9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNI--KSVQSQG--FKLNVWDIGGQRKIRPYWRSYFEN   83 (176)
T ss_dssp             CSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTEEE--EEEEETT--EEEEEEECSSCGGGHHHHHHHHTT
T ss_pred             hhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeeeeE--EEeccCC--eeEeEeeccccccchhHHHHHhhc
Confidence            445566789999999999999999999998876432 33334433  3333343  778899999999999999999999


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHH-----HHHHcCCeEEEEccCC
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKA-----LAEAQGLFFMETSALD  160 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~  160 (223)
                      +|++|+|||++++.+++.+..|+..+... ...++|+++|+||+|+.....  ..+..+     .+....+++++|||++
T Consensus        84 ~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~t  161 (176)
T d1fzqa_          84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALT  161 (176)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             cceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            99999999999999999998887776544 345789999999999975432  222222     1223356799999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTE  174 (223)
Q Consensus       161 ~~~i~~~~~~l~~~  174 (223)
                      |.|++++|++|++.
T Consensus       162 g~gv~e~~~~l~~~  175 (176)
T d1fzqa_         162 GEGVQDGMNWVCKN  175 (176)
T ss_dssp             CTTHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=1.5e-29  Score=183.91  Aligned_cols=157  Identities=20%  Similarity=0.356  Sum_probs=122.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+|+|++|||||||+++|.+..+ ....+|.+....  .+...  .+.+.+||++|++.+...+..+++.+++++++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIK--TLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEE--EEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeee--ecccc--ccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            58999999999999999999998765 445566664433  33334  47788999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHH-hhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCCCHHHH
Q 027417           94 YDISRRQTFDSIGRWLNEL-HTHSDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSNVTAA  167 (223)
Q Consensus        94 ~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~  167 (223)
                      ||+++..++.....|+... ......+.|+++|+||+|+.+...  .++.....     ...++++++|||++|.|+.++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC--HHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            9999999998886665554 333445799999999999975433  33333221     122456999999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          168 FQTVVTEIYN  177 (223)
Q Consensus       168 ~~~l~~~~~~  177 (223)
                      |++|++++.+
T Consensus       155 ~~~l~~~i~~  164 (165)
T d1ksha_         155 IDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999987753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=2.5e-30  Score=191.10  Aligned_cols=162  Identities=19%  Similarity=0.355  Sum_probs=122.4

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCE
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG   89 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   89 (223)
                      ..+..+||+++|++|||||||+++|.+..+.. ..+|.+......  ...  .+.+.+||++|++.+...+..++..+|+
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~~~--~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVETL--SYK--NLKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEEEE--EET--TEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEEEE--eeC--CEEEEEEecccccccchhHHhhhcccee
Confidence            34567999999999999999999998876643 345555444333  233  4788899999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccCHHHHHH-----HHHHcCCeEEEEccCCCCC
Q 027417           90 ALLVYDISRRQTFDSIGRWLNELHT-HSDMNVVTILVGNKSDLKDAREVTTAEGKA-----LAEAQGLFFMETSALDSSN  163 (223)
Q Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~  163 (223)
                      +++|+|++++.++.....|+..+.. ....+.|+++|+||+|+...  ...++...     .+...++++++|||++|+|
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc--cCHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            9999999999999999888766543 34557999999999999743  23333322     2233456799999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027417          164 VTAAFQTVVTEIYNI  178 (223)
Q Consensus       164 i~~~~~~l~~~~~~~  178 (223)
                      ++++|++|++.+.+.
T Consensus       166 v~e~~~~l~~~i~~~  180 (182)
T d1moza_         166 ITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999877543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=7e-30  Score=187.24  Aligned_cols=157  Identities=21%  Similarity=0.405  Sum_probs=121.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      ...+||+++|++|||||||+++|.++.+.. ..+|.+.....  ...  ..+.+.+||+||...+...+..+++.++++|
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEEEE--EEE--TTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeEEE--eec--cceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            456999999999999999999999876532 33444443322  222  3478889999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccCHHHHHH-----HHHHcCCeEEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHT-HSDMNVVTILVGNKSDLKDAREVTTAEGKA-----LAEAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~  165 (223)
                      +|+|+++..++..+..|+..... ......|+++++||+|+.+..  ...++..     .+...++.+++|||++|+||+
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccc--cHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            99999999999999887766543 345579999999999997532  2222222     223335679999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          166 AAFQTVVTEI  175 (223)
Q Consensus       166 ~~~~~l~~~~  175 (223)
                      ++|++|...+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999997653

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=1.6e-28  Score=177.11  Aligned_cols=156  Identities=18%  Similarity=0.326  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEE
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY   94 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   94 (223)
                      +||+|+|++|||||||+++|.++.+..........     ....+...+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            68999999999999999999988776544433221     1223345678899999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcc---cCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027417           95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDARE---VTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus        95 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                      |++++.++..+..|+..+... .....|+++++||.|+.....   +.......++...++++++|||++|.|++++|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            999999999998888776543 345689999999999875422   1122222344455778999999999999999999


Q ss_pred             HHHHH
Q 027417          171 VVTEI  175 (223)
Q Consensus       171 l~~~~  175 (223)
                      |++++
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=164.62  Aligned_cols=157  Identities=22%  Similarity=0.373  Sum_probs=115.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      +..+||+|+|.+|||||||+++|.++.+.... ++.+...  ......  .+.+.+||+++.+.....+...+..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~~~--~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCSSC--EEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccceeE--EEEeec--ceEEEEeccccccccccchhhhhccceeee
Confidence            45699999999999999999999998765322 2223222  222233  367889999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCCCHH
Q 027417           92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  165 (223)
                      +++|.++..+++....++...... .....|+++|+||+|+.....  ..+.....     ...+++++++||++|+|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            999999999998887665554333 345799999999999875432  23323222     3345679999999999999


Q ss_pred             HHHHHHHHHH
Q 027417          166 AAFQTVVTEI  175 (223)
Q Consensus       166 ~~~~~l~~~~  175 (223)
                      ++|++|++++
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.92  E-value=1.6e-24  Score=156.99  Aligned_cols=158  Identities=20%  Similarity=0.338  Sum_probs=120.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      ..+||+|+|.+|||||||+++|+++.+... .++.+...  ......  .+.+.+||.+|...........+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceee--eeeccC--ceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            358999999999999999999999887543 33434322  222333  3677899999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHH-HhhcCCCCCcEEEEEeCCCCCCCcc---cCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027417           93 VYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLKDARE---VTTAEGKALAEAQGLFFMETSALDSSNVTAAF  168 (223)
Q Consensus        93 v~d~~~~~s~~~~~~~~~~-i~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  168 (223)
                      ++|+.+..++.....+... +........|+++++||.|+.....   +..+.+..++...+++|++|||++|.|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            9999998888887665444 4433455789999999999976432   22222223344556789999999999999999


Q ss_pred             HHHHHHH
Q 027417          169 QTVVTEI  175 (223)
Q Consensus       169 ~~l~~~~  175 (223)
                      ++|++.+
T Consensus       159 ~~l~~~l  165 (169)
T d1upta_         159 EWLVETL  165 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998766

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=8.2e-25  Score=160.64  Aligned_cols=157  Identities=21%  Similarity=0.136  Sum_probs=107.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CccceeEeEEEEEEECCEEEEEEEEeCCCchhh--------hchhHh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF--------RAVTSA   82 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~   82 (223)
                      .+.-.|+|+|.+|||||||+++|++....... .+.+............+  ..+.+|||||....        ......
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccc
Confidence            45567999999999999999999987654322 22222233333333444  56779999996432        222344


Q ss_pred             hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCC
Q 027417           83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDS  161 (223)
Q Consensus        83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  161 (223)
                      .+.++|++|+|+|++++.+... ..|...+.... .+.|+++|+||+|+.+..   .+....+.+..+ ..++++||++|
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~-~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~  155 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDE  155 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCH
T ss_pred             ccccccceeeeechhhhhcccc-cchhhheeccc-cchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCC
Confidence            5689999999999988654332 44455555443 368999999999987532   233344445554 45899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVTEI  175 (223)
Q Consensus       162 ~~i~~~~~~l~~~~  175 (223)
                      .|+++++++|++.+
T Consensus       156 ~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         156 RQVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999997643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.3e-25  Score=165.19  Aligned_cols=158  Identities=18%  Similarity=0.179  Sum_probs=123.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+|+|..|||||||++++..+.+  .+.||.|.+....    ....+.+++||++|++.+...+..+++.+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPF----DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEEE----ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEEE----eccceeeeeccccccccccccccccccccceeeEe
Confidence            68999999999999999999998776  3668888765432    23457788999999999999999999999999999


Q ss_pred             EECCCHh-----------hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC----------------cccCHHHHHHHH
Q 027417           94 YDISRRQ-----------TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA----------------REVTTAEGKALA  146 (223)
Q Consensus        94 ~d~~~~~-----------s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----------------~~~~~~~~~~~~  146 (223)
                      +|.++..           .++.+..|...+......+.|+++++||.|+.+.                .......+..+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998753           4667788888887776678999999999997431                112233333322


Q ss_pred             H----------HcCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417          147 E----------AQGLFFMETSALDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       147 ~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  177 (223)
                      .          ...+.++++||++|.||+++|+.+.+.+.+
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            1          123457899999999999999999877754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2e-23  Score=150.40  Aligned_cols=151  Identities=21%  Similarity=0.274  Sum_probs=116.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD   95 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   95 (223)
                      ||+++|++|||||||+++|.++.+. ...++.+.+...    .....+.+.+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEE----LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEE----ECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEEE----eccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            7999999999999999999998764 345554543332    22233567799999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH------------HHcCCeEEEEccCCCC
Q 027417           96 ISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALA------------EAQGLFFMETSALDSS  162 (223)
Q Consensus        96 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~  162 (223)
                      .++..++.....|+...... ...+.|++++++|.|+...  ....+.....            ....+.+++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC--CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc--CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            99999988887776666443 4557899999999998743  3333332221            1223468999999999


Q ss_pred             CHHHHHHHHHH
Q 027417          163 NVTAAFQTVVT  173 (223)
Q Consensus       163 ~i~~~~~~l~~  173 (223)
                      |++++|++|.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999863

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=4.8e-25  Score=159.15  Aligned_cols=150  Identities=21%  Similarity=0.239  Sum_probs=109.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh--------chhHhhhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPN-SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR--------AVTSAYYR   85 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~~~   85 (223)
                      +||+++|++|||||||+++|++...... ..+....+.........+  ..+.+||++|.....        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            7999999999999999999998765432 223323333334444455  567799999943321        12334568


Q ss_pred             CCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027417           86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT  165 (223)
Q Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  165 (223)
                      .+|++++++|..+..+++....|...+.... .+.|+++|+||+|+......       +.+..+.+++++||++|.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCCHH
Confidence            9999999999999888877777766665544 36999999999998653221       112245689999999999999


Q ss_pred             HHHHHHHHH
Q 027417          166 AAFQTVVTE  174 (223)
Q Consensus       166 ~~~~~l~~~  174 (223)
                      +++++|++.
T Consensus       152 ~L~~~l~~~  160 (161)
T d2gj8a1         152 VLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=9.7e-24  Score=156.52  Aligned_cols=155  Identities=21%  Similarity=0.265  Sum_probs=114.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEE
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV   93 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   93 (223)
                      .+||+++|..|||||||+++|....++.     .+..  ...+..  ..+.+.+||++|++.+...+..+++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t-----~~~~--~~~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAG-----TGIV--ETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCC-----CSEE--EEEEEE--TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC-----ccEE--EEEEEe--eeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            6899999999999999999998766543     2322  222333  447788999999999999999999999999999


Q ss_pred             EECCCHhhH-----------HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC---------------cccCHHHHHH---
Q 027417           94 YDISRRQTF-----------DSIGRWLNELHTHSDMNVVTILVGNKSDLKDA---------------REVTTAEGKA---  144 (223)
Q Consensus        94 ~d~~~~~s~-----------~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~---------------~~~~~~~~~~---  144 (223)
                      +|+++..++           +....|...+........|+++++||+|+...               ......++..   
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999987665           34456666666666668999999999996321               1112222211   


Q ss_pred             --HHHH------cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417          145 --LAEA------QGLFFMETSALDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       145 --~~~~------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  177 (223)
                        +...      ..+++++|||+++.||+++|+.+.+.+++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence              1111      23457889999999999999999877654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1.8e-23  Score=153.55  Aligned_cols=156  Identities=17%  Similarity=0.143  Sum_probs=105.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhHhhhcCCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYRGAV   88 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d   88 (223)
                      +|+|+|.+|||||||+|+|++...........+........ .......+.+|||||...       ........+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            59999999999999999999865543333332333333222 333345678999999432       1122334568899


Q ss_pred             EEEEEEECCCH--hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           89 GALLVYDISRR--QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        89 ~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      ++++++|....  ..+.....|+...... ..++|+++|+||+|+.+...  .++..+.....+.+++.+||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998663  3344444454443221 12479999999999976432  2344555566788999999999999999


Q ss_pred             HHHHHHHHH
Q 027417          167 AFQTVVTEI  175 (223)
Q Consensus       167 ~~~~l~~~~  175 (223)
                      +++.|.+.+
T Consensus       159 L~~~i~~~l  167 (180)
T d1udxa2         159 LKEALHALV  167 (180)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987665

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.89  E-value=2.2e-22  Score=147.75  Aligned_cols=156  Identities=21%  Similarity=0.264  Sum_probs=111.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      +...||+|+|++|||||||+++|.++.+... .++.+.+...  +...+  ..+.+||+.+...+...+...++..++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEE--LTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEE--EEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccceeE--EEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            5678999999999999999999998876543 3443433332  33444  45679999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHH-hhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----------------HcCCeE
Q 027417           92 LVYDISRRQTFDSIGRWLNEL-HTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----------------AQGLFF  153 (223)
Q Consensus        92 ~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~  153 (223)
                      +++|+++...+.....++... ......+.|+++++||.|+...  ....+......                 ..++++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            999999999888876554444 3334457999999999998753  33444333322                 123458


Q ss_pred             EEEccCCCCCHHHHHHHHHHH
Q 027417          154 METSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       154 ~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      ++|||++|+|++++|++|++.
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEeCCCCCCHHHHHHHHHHh
Confidence            999999999999999999864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=6e-23  Score=149.57  Aligned_cols=155  Identities=22%  Similarity=0.187  Sum_probs=97.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh---------hhchhHhhhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER---------FRAVTSAYYRG   86 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~~~   86 (223)
                      .|+|+|++|||||||+++|++......... .+.+.......+......+.+||++|...         +.......+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDE-EGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceeccc-Cceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            689999999999999999998654321111 12222222222222335678999999321         22334445688


Q ss_pred             CCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417           87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      +|+++++.|.++...... ..++..+...   ++|+|+|+||+|+.+.  ...+...++.+.....++++||++|.|+++
T Consensus        81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid~  154 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLDT  154 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHHH
T ss_pred             CcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHHH
Confidence            999999999887544332 3344444433   5799999999998642  222223333333344589999999999999


Q ss_pred             HHHHHHHHHHH
Q 027417          167 AFQTVVTEIYN  177 (223)
Q Consensus       167 ~~~~l~~~~~~  177 (223)
                      ++++|++.+.+
T Consensus       155 L~~~i~~~l~e  165 (171)
T d1mkya1         155 MLETIIKKLEE  165 (171)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhCCC
Confidence            99999886643

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=7e-23  Score=152.62  Aligned_cols=159  Identities=21%  Similarity=0.276  Sum_probs=109.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL   92 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   92 (223)
                      +.+||+++|++|||||||+++|.   +...+.||.|.....  +..  ..+.+.+||++|++.+...+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~--~~~--~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYD--FEI--KNVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEE--EEE--TTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEE--Eee--eeeeeeeecccceeeecccccccccccceeEE
Confidence            36899999999999999999994   445677888865443  333  44778899999999999999999999999999


Q ss_pred             EEECCCHhh----------HHHHHHHHHHH-hhcCCCCCcEEEEEeCCCCCCC----------------cccCHHHHHHH
Q 027417           93 VYDISRRQT----------FDSIGRWLNEL-HTHSDMNVVTILVGNKSDLKDA----------------REVTTAEGKAL  145 (223)
Q Consensus        93 v~d~~~~~s----------~~~~~~~~~~i-~~~~~~~~p~ivv~nK~Dl~~~----------------~~~~~~~~~~~  145 (223)
                      ++|.++..+          ++....|+..+ ......+.|+++++||+|+.+.                ..-..+.+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            999998533          34444444443 3344557999999999997421                11223344433


Q ss_pred             HHH-----------cCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027417          146 AEA-----------QGLFFMETSALDSSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       146 ~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  178 (223)
                      ...           ..+.++++||+++.||+++|+.+...+.+.
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            221           124567899999999999999987766543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.88  E-value=1.1e-22  Score=149.33  Aligned_cols=160  Identities=15%  Similarity=0.103  Sum_probs=104.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccc-----eeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTI-----GVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA   87 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   87 (223)
                      ..++|+|+|++++|||||+++|++.......+.+.     +.+.......+......+.++|++|+..+.......+..+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~   83 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII   83 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence            46899999999999999999999643322222111     1111111111111235677999999999988888899999


Q ss_pred             CEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHH----cCCeEEEEccCCC
Q 027417           88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT--TAEGKALAEA----QGLFFMETSALDS  161 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~----~~~~~~~~Sa~~~  161 (223)
                      |++++++|.++....+...-| ..+..   .++|+++|+||+|+....+..  .+..+.+.+.    .+.+++++||++|
T Consensus        84 d~~ilv~d~~~g~~~~~~~~~-~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g  159 (179)
T d1wb1a4          84 DLALIVVDAKEGPKTQTGEHM-LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTG  159 (179)
T ss_dssp             CEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTC
T ss_pred             cccccccccccccchhhhhhh-hhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCC
Confidence            999999999985433322222 22222   268999999999998643221  1222233322    2457999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027417          162 SNVTAAFQTVVTEIY  176 (223)
Q Consensus       162 ~~i~~~~~~l~~~~~  176 (223)
                      +|++++++.|.+.+-
T Consensus       160 ~gi~eL~~~I~~~l~  174 (179)
T d1wb1a4         160 FGVDELKNLIITTLN  174 (179)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcCC
Confidence            999999999987663

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.1e-21  Score=144.52  Aligned_cols=157  Identities=22%  Similarity=0.132  Sum_probs=101.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh------------hch
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF------------RAV   79 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------------~~~   79 (223)
                      ..+||+|+|++|||||||+++|++..... ...+..........+..++  ..+.++|+||....            ...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            36999999999999999999999865422 1112212222223344454  45678899985332            223


Q ss_pred             hHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCeEE
Q 027417           80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-----QGLFFM  154 (223)
Q Consensus        80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~  154 (223)
                      ....++.+|++++|+|++.+..-+ ...++..+...   +.|+|+|+||+|+....+....+..+....     ...+++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~~---~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMERR---GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHT---TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhcCCEEEEeecccccchhh-HHHHHHHHHHc---CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            444567899999999998754322 23333333332   689999999999876554444444333222     235799


Q ss_pred             EEccCCCCCHHHHHHHHHHHH
Q 027417          155 ETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       155 ~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      ++||++|.|++++++.|.+.+
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999996544

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.7e-22  Score=145.34  Aligned_cols=148  Identities=22%  Similarity=0.192  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCccceeEeEEEEEEECCEEEEEEEEeCCCchhh---------hchhHhhh
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPN-SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF---------RAVTSAYY   84 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~   84 (223)
                      +||+|+|.+|||||||+|+|++...... ..+..+.......+...+  ..+.+|||||....         .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6899999999999999999998654322 222222223333344454  56779999994221         01122345


Q ss_pred             cCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 027417           85 RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNV  164 (223)
Q Consensus        85 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  164 (223)
                      ..+|++++|+|.+++...+...-+.. +     ...++++++||.|+.+..  ..++.... ...+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~~-~-----~~~~~i~~~~k~d~~~~~--~~~~~~~~-~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILER-I-----KNKRYLVVINKVDVVEKI--NEEEIKNK-LGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHHH-H-----TTSSEEEEEEECSSCCCC--CHHHHHHH-HTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhhh-c-----ccccceeeeeeccccchh--hhHHHHHH-hCCCCcEEEEECCCCCCH
Confidence            78999999999999876554333321 1     257899999999988642  23332222 234567999999999999


Q ss_pred             HHHHHHHHH
Q 027417          165 TAAFQTVVT  173 (223)
Q Consensus       165 ~~~~~~l~~  173 (223)
                      ++++++|.+
T Consensus       150 ~~L~~~I~k  158 (160)
T d1xzpa2         150 EKLEESIYR  158 (160)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999865

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=9e-22  Score=144.67  Aligned_cols=150  Identities=20%  Similarity=0.174  Sum_probs=96.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh---------------hhchh
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER---------------FRAVT   80 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------------~~~~~   80 (223)
                      .|+|+|.+|||||||+|+|++........+.  ++.....+...+    +.+|||||...               +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g--~T~~~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPG--VTRKIIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTT--CTTSCEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCC--Eeeccccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999999987664433332  222233333332    46899999411               11223


Q ss_pred             HhhhcCCCEEEEEEECCCHhhHHHH----------HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC
Q 027417           81 SAYYRGAVGALLVYDISRRQTFDSI----------GRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG  150 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~----------~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  150 (223)
                      ...++.+|++++|+|..........          ...++.+..   .++|+++|+||+|+.+..+.   ....+.....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~---~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQE---VINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHH---HHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHH---HHHHHHHHhc
Confidence            3445789999999999765332221          112222322   36899999999998754321   1122222222


Q ss_pred             -------CeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027417          151 -------LFFMETSALDSSNVTAAFQTVVTEIYN  177 (223)
Q Consensus       151 -------~~~~~~Sa~~~~~i~~~~~~l~~~~~~  177 (223)
                             ..++++||++|.|++++++.|.+.+-+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   238899999999999999999876643

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.85  E-value=1.8e-21  Score=147.90  Aligned_cols=163  Identities=18%  Similarity=0.178  Sum_probs=104.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEE----------------EECCEEEEEEEEeCCCchhhhchh
Q 027417           17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM----------------DINGKEVKAQIWDTAGQERFRAVT   80 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~D~~G~~~~~~~~   80 (223)
                      |+|+|++++|||||+++|++...........+........                .+......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998753322111111100001111                112233467899999999998888


Q ss_pred             HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--------------------H
Q 027417           81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT--------------------A  140 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--------------------~  140 (223)
                      ...+..+|++|+|+|+.+.-.-.... .+..+..   .++|+|+++||+|+........                    .
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQE-ALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccchhH-HHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            88889999999999998754333322 2222222   2689999999999875322110                    0


Q ss_pred             HHH----HHHHH--------------cCCeEEEEccCCCCCHHHHHHHHHHHHHHHHhhhh
Q 027417          141 EGK----ALAEA--------------QGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV  183 (223)
Q Consensus       141 ~~~----~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~  183 (223)
                      ...    .+...              ..++++++||++|.|++++++.|...+.+.+.+++
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~~l  224 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQL  224 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGG
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            000    11110              11468999999999999999999877666555543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.4e-20  Score=138.79  Aligned_cols=117  Identities=19%  Similarity=0.268  Sum_probs=86.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh-chhHhhhcCCCEEEEEE
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-AVTSAYYRGAVGALLVY   94 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~~i~v~   94 (223)
                      +|+|+|++|||||||+++|+++.+... .++.+.+.....+ .++..+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            699999999999999999999877554 3454554433322 24456788999999998875 56777889999999999


Q ss_pred             ECCCHhhH-HHHHHHHHHH-h--hcCCCCCcEEEEEeCCCCCCC
Q 027417           95 DISRRQTF-DSIGRWLNEL-H--THSDMNVVTILVGNKSDLKDA  134 (223)
Q Consensus        95 d~~~~~s~-~~~~~~~~~i-~--~~~~~~~p~ivv~nK~Dl~~~  134 (223)
                      |+++..++ .....|+..+ .  ......+|++|++||+|+..+
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            99997663 4444444333 2  223446899999999999754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=4.9e-20  Score=136.66  Aligned_cols=157  Identities=15%  Similarity=0.120  Sum_probs=94.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh----------h---h
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----------F---R   77 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~---~   77 (223)
                      .+...+|+|+|++|||||||+|+|++...........+.+..........   .+.+.|+++...          .   .
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHH
Confidence            44456999999999999999999998653222222223332233333332   234667666211          1   1


Q ss_pred             chhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----cCCeE
Q 027417           78 AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEA----QGLFF  153 (223)
Q Consensus        78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~  153 (223)
                      ......+..+|++++++|.+++..- .-..+++.+...   ++|+++|+||+|+....+. .+....+.+.    .+.++
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~---~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~~  171 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY---GIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---TCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSEE
T ss_pred             hhhhccccchhhhhhhhhccccccc-cccccccccccc---cCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCCE
Confidence            1222344678999999999875332 223444444433   5899999999998754332 2222223222    34579


Q ss_pred             EEEccCCCCCHHHHHHHHHHHH
Q 027417          154 METSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       154 ~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      +.+||++|.|+++++++|.+.+
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998765

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=4e-21  Score=141.44  Aligned_cols=156  Identities=17%  Similarity=0.060  Sum_probs=98.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhh----ch---hHhhhcCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR----AV---TSAYYRGA   87 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~~---~~~~~~~~   87 (223)
                      .+|+|+|.+|||||||+|+|++........+..+.........+. ....+.+|||||.....    ..   ....+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEec-CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            369999999999999999999866543333332333333333332 22356799999953211    11   22234568


Q ss_pred             CEEEEEEECCCHhhHHHH---HH--HHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCeEEEEccCC
Q 027417           88 VGALLVYDISRRQTFDSI---GR--WLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ--GLFFMETSALD  160 (223)
Q Consensus        88 d~~i~v~d~~~~~s~~~~---~~--~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~  160 (223)
                      +.++++++..........   ..  +..........++|+++|+||+|+.+..    +....+.+..  +.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCC
Confidence            899888887654322221   11  1112222233368999999999987532    2233344434  57799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027417          161 SSNVTAAFQTVVTEI  175 (223)
Q Consensus       161 ~~~i~~~~~~l~~~~  175 (223)
                      |.|++++++.|++.+
T Consensus       157 g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         157 REGLRELLFEVANQL  171 (185)
T ss_dssp             SSTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999987765

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=2.4e-21  Score=146.71  Aligned_cols=159  Identities=18%  Similarity=0.208  Sum_probs=114.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL   91 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   91 (223)
                      +...||+++|+.|||||||++++..+.+    .||.|....  .+.+.+  +.+.+||++|++.+...|..+++.+++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~~--~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFET--KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEEE--EEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEEE--EEEECc--EEEEEEecCccceeccchhhhcccccceE
Confidence            4578999999999999999999976543    467775543  344454  77889999999999999999999999999


Q ss_pred             EEEECCCHh-----------hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc------------------------
Q 027417           92 LVYDISRRQ-----------TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE------------------------  136 (223)
Q Consensus        92 ~v~d~~~~~-----------s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~------------------------  136 (223)
                      +++|.++..           ..+....|...+....-.+.|++|++||+|+.+++.                        
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~  155 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT  155 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCC
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccc
Confidence            999998642           233344455555544445799999999999743210                        


Q ss_pred             ------cCHHHHHHH-----HHH--------cCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027417          137 ------VTTAEGKAL-----AEA--------QGLFFMETSALDSSNVTAAFQTVVTEIYNI  178 (223)
Q Consensus       137 ------~~~~~~~~~-----~~~--------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  178 (223)
                            ....++..+     ...        ..+..+++||+++.+|+.+|+.+...+++.
T Consensus       156 ~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         156 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             ccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                  012223222     111        123457899999999999999987766654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.83  E-value=1.4e-19  Score=134.35  Aligned_cols=162  Identities=18%  Similarity=0.156  Sum_probs=105.7

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----ccceeEeEEEEEE-------------------ECCEEEEEE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-----STIGVEFQTQKMD-------------------INGKEVKAQ   66 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-----~~~~~~~~~~~~~-------------------~~~~~~~~~   66 (223)
                      .+..++|+++|+.++|||||+++|++........     .+....+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            4667899999999999999999998743221111     0000111111110                   112345688


Q ss_pred             EEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHH
Q 027417           67 IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKA  144 (223)
Q Consensus        67 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~  144 (223)
                      ++|+||+..|.......+..+|++++++|+.+....+.....+..+....  ..++|++.||+|+.+....  ..++..+
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHH
Confidence            99999999999988888899999999999988532222222222332221  2557888999998864321  1233334


Q ss_pred             HHHHc---CCeEEEEccCCCCCHHHHHHHHHHH
Q 027417          145 LAEAQ---GLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       145 ~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      +....   +++++++||++|.|++++++.|...
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44333   3679999999999999999888653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.82  E-value=2e-19  Score=134.40  Aligned_cols=162  Identities=16%  Similarity=0.092  Sum_probs=101.7

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcc-------ceeEeEEEEEE----------------------ECCE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKST-------IGVEFQTQKMD----------------------INGK   61 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~-------~~~~~~~~~~~----------------------~~~~   61 (223)
                      ..+.++|+++|+.++|||||+++|++..........       .+.........                      ....
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            345689999999999999999999863221111100       01000000000                      0112


Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--H
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT--T  139 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~  139 (223)
                      ...+.++|+||+..|.......+..+|++|+|+|+.+.-.-..-+..+..+....  ..|+|+++||+|+.+..+..  .
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHH
Confidence            3468899999999999888888899999999999987531111122222222221  25888899999997643211  1


Q ss_pred             HHHHHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHH
Q 027417          140 AEGKALAEAQ---GLFFMETSALDSSNVTAAFQTVVTE  174 (223)
Q Consensus       140 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~  174 (223)
                      .+...+....   +++++++||++|.|++++++.|.+.
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            2222222222   4679999999999999999987653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.80  E-value=8.3e-20  Score=135.20  Aligned_cols=158  Identities=16%  Similarity=0.096  Sum_probs=106.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC-----CC---------CCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDE-----FY---------PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA   78 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~   78 (223)
                      +.++|+++|+.++|||||+++|++..     ..         .......|.+.......+......+.++|+||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            46899999999999999999997520     00         00011224444444455555556788999999999998


Q ss_pred             hhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc---CHHHHHHHHHHcC-----
Q 027417           79 VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV---TTAEGKALAEAQG-----  150 (223)
Q Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----  150 (223)
                      .....+..+|++|+|+|+.+...-+..+.| ..+....  ..|+|++.||+|+....+.   -..+.+++....+     
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT~~~~-~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhHHHHH-HHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            888889999999999999985433332222 2222221  3678899999998753221   1223445554443     


Q ss_pred             CeEEEEccCCC----------CCHHHHHHHHHH
Q 027417          151 LFFMETSALDS----------SNVTAAFQTVVT  173 (223)
Q Consensus       151 ~~~~~~Sa~~~----------~~i~~~~~~l~~  173 (223)
                      ++++++||++|          .++.++++.|.+
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence            56999999988          477777776644

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.75  E-value=1.9e-17  Score=124.57  Aligned_cols=154  Identities=20%  Similarity=0.207  Sum_probs=97.8

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC---------------C--------------CccceeEeEEEEEE
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARD--EFYPN---------------S--------------KSTIGVEFQTQKMD   57 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~--~~~~~---------------~--------------~~~~~~~~~~~~~~   57 (223)
                      ...+..+||+++|+.++|||||+.+|+..  .+...               .              ....+.+.......
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            44567899999999999999999999642  11000               0              00001111112222


Q ss_pred             ECCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCC-CcEEEEEeCCCCCCCcc
Q 027417           58 INGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNKSDLKDARE  136 (223)
Q Consensus        58 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~p~ivv~nK~Dl~~~~~  136 (223)
                      +......+.++|+||+..|..........+|++|+|+|+.+...-+..+.| ..+...   + ..+|++.||+|+.+..+
T Consensus        84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~-~~~~~~---gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS-YIASLL---GIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCEEEEEEECTTTTTSCH
T ss_pred             EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHH-HHHHHc---CCCEEEEEEEccccccccc
Confidence            222335678999999999999999999999999999999885333332222 122211   4 44788899999986433


Q ss_pred             cCH----HHHHHHHHHcC-----CeEEEEccCCCCCHHH
Q 027417          137 VTT----AEGKALAEAQG-----LFFMETSALDSSNVTA  166 (223)
Q Consensus       137 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  166 (223)
                      ...    ++...+.+..+     ++|+++||.+|.|+.+
T Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         160 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            222    23344555544     3589999999998843

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.2e-17  Score=121.68  Aligned_cols=158  Identities=20%  Similarity=0.139  Sum_probs=98.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEe-EEEEEEECCEEEEEEEEeCCCchhhhc---------hh
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEF-QTQKMDINGKEVKAQIWDTAGQERFRA---------VT   80 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~---------~~   80 (223)
                      +.+--.|+|+|.+|||||||+|+|++...........+... .........  ..+..||++|......         ..
T Consensus         2 ~~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T d1egaa1           2 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA   79 (179)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred             CccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcc
Confidence            34556799999999999999999998765433332222222 222222333  3455788887432211         11


Q ss_pred             HhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccC
Q 027417           81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSAL  159 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  159 (223)
                      ......+++++++.|..+...  ....+...+..   ...|+++|+||+|..............+....+ .+++++||+
T Consensus        80 ~~~~~~~~~~l~~~d~~~~~~--~~~~~~~~l~~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~  154 (179)
T d1egaa1          80 SSSIGDVELVIFVVEGTRWTP--DDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE  154 (179)
T ss_dssp             TSCCCCEEEEEEEEETTCCCH--HHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             ccchhhcceeEEEEecCccch--hHHHHHHHhhh---ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCc
Confidence            122345777788888776332  22222222222   357889999999987654433444555555555 579999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027417          160 DSSNVTAAFQTVVTEI  175 (223)
Q Consensus       160 ~~~~i~~~~~~l~~~~  175 (223)
                      +|.|++++++.|++.+
T Consensus       155 ~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         155 TGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTTTHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhC
Confidence            9999999999987644

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=7.6e-18  Score=125.44  Aligned_cols=143  Identities=19%  Similarity=0.153  Sum_probs=92.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC------CCC------CCCc---cceeEeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDE------FYP------NSKS---TIGVEFQTQKMDINGKEVKAQIWDTAGQERFR   77 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~------~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   77 (223)
                      +.+||+++|++++|||||+++|++..      ...      ...+   .-|.+.......+......+.|+||||+..|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            46899999999999999999996310      000      0000   00233333333333344567799999999999


Q ss_pred             chhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHcC---
Q 027417           78 AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV---TTAEGKALAEAQG---  150 (223)
Q Consensus        78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~---  150 (223)
                      ......+..+|++|+|+|+.+....+..+.|.... ..   ++| +|+++||+|+.+..+.   -.++.+.+....+   
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~-~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  157 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTREHILLAR-QV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  157 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHH-HT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHH-Hc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            99989999999999999999876555544443222 22   455 6778999998653221   1223344444433   


Q ss_pred             --CeEEEEccC
Q 027417          151 --LFFMETSAL  159 (223)
Q Consensus       151 --~~~~~~Sa~  159 (223)
                        ++++..|+.
T Consensus       158 ~~i~~i~~sa~  168 (204)
T d2c78a3         158 DEVPVIRGSAL  168 (204)
T ss_dssp             TTSCEEECCHH
T ss_pred             ccceeeeeech
Confidence              457888874

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.1e-17  Score=124.85  Aligned_cols=116  Identities=19%  Similarity=0.283  Sum_probs=81.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhhhchhHhh----hcCCC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY----YRGAV   88 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~----~~~~d   88 (223)
                      +.++|+|+|++|||||||+|+|++..+.+    +++.....  ..+......+.+||+||+..+...+..+    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~--~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPL--SAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCE--EETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceE--EEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            45799999999999999999999876542    22222222  2334445567899999988765555444    34568


Q ss_pred             EEEEEEECCC-HhhHHHHHHHH----HHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417           89 GALLVYDISR-RQTFDSIGRWL----NELHTHSDMNVVTILVGNKSDLKDA  134 (223)
Q Consensus        89 ~~i~v~d~~~-~~s~~~~~~~~----~~i~~~~~~~~p~ivv~nK~Dl~~~  134 (223)
                      .+++++|..+ ..+++....|+    ..+......+.|+++|+||+|+...
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            8899999775 45555555554    3344455668999999999998754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=5.1e-16  Score=119.74  Aligned_cols=115  Identities=19%  Similarity=0.200  Sum_probs=81.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC--CCCC----------------CCCccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARD--EFYP----------------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE   74 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   74 (223)
                      ...||+|+|+.|+|||||+.+|+..  ....                ......++......+..+  ...++|+||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~--~~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEET--TEEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccC--CeEEEEecCCchh
Confidence            4568999999999999999999642  1110                000111111222333334  4678899999999


Q ss_pred             hhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      .|.......++.+|+.|+|+|..+.-.-....-|... .   ..+.|.++++||+|...
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a-~---~~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-E---KYKVPRIAFANKMDKTG  137 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHH-H---TTTCCEEEEEECTTSTT
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHH-H---HcCCCEEEEEecccccc
Confidence            9999999999999999999999997666665566333 2   22799999999999754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.4e-16  Score=116.51  Aligned_cols=161  Identities=14%  Similarity=0.089  Sum_probs=82.4

Q ss_pred             ccCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchh-------hhchhH
Q 027417            9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTS   81 (223)
Q Consensus         9 ~~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~   81 (223)
                      -+.+..++|+|+|.+|||||||+|+|++...........+................+..++.++...       ......
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhh
Confidence            3466789999999999999999999998765443332222222222222222222222222222111       111111


Q ss_pred             h---hhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHc--CCeEE
Q 027417           82 A---YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT--TAEGKALAEAQ--GLFFM  154 (223)
Q Consensus        82 ~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~~  154 (223)
                      .   .....+.++.+.+......... ..++..+...   ..++++++||+|+.......  .+..++.....  ..+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i  166 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS---NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE  166 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred             hhhhhhhheeEEEEeecccccchhHH-HHHHHHhhhc---cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence            1   1233445555666655433222 3333333332   57889999999987632211  11222222222  34689


Q ss_pred             EEccCCCCCHHHHHHHHHH
Q 027417          155 ETSALDSSNVTAAFQTVVT  173 (223)
Q Consensus       155 ~~Sa~~~~~i~~~~~~l~~  173 (223)
                      .+||++|.|++++++.|..
T Consensus       167 ~vSA~~g~Gid~L~~~i~~  185 (188)
T d1puia_         167 TFSSLKKQGVDKLRQKLDT  185 (188)
T ss_dssp             ECBTTTTBSHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHH
Confidence            9999999999999998764

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.6e-16  Score=120.74  Aligned_cols=152  Identities=19%  Similarity=0.146  Sum_probs=97.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcC--CCC---------------CCCC------------ccceeEeEEEEEEECCE
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARD--EFY---------------PNSK------------STIGVEFQTQKMDINGK   61 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~--~~~---------------~~~~------------~~~~~~~~~~~~~~~~~   61 (223)
                      ....++|+++|+.++|||||+.+|+..  ...               ....            ..-|.+.......+...
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            345689999999999999999998631  110               0000            00122222222222223


Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhh-------HHHHHHHHHHHhhcCCCCC-cEEEEEeCCCCCC
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQT-------FDSIGRWLNELHTHSDMNV-VTILVGNKSDLKD  133 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~i~~~~~~~~-p~ivv~nK~Dl~~  133 (223)
                      ..+++|+|+|||..|.......+..+|++|+|+|+....-       .+..+.|+ .....   ++ ++|+++||+|+.+
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~~~~---gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFTL---GVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHHT---TCCEEEEEEECGGGGT
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HHHHc---CCCeEEEEEECCCCCC
Confidence            4678899999999999999999999999999999986421       12222232 11211   34 4788899999876


Q ss_pred             CcccCH----HHHHHHHHHcC-----CeEEEEccCCCCCHHH
Q 027417          134 AREVTT----AEGKALAEAQG-----LFFMETSALDSSNVTA  166 (223)
Q Consensus       134 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  166 (223)
                      ..+...    ++...+....+     ++++++|+.+|.|+-+
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            543222    23344444444     4589999999988654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.64  E-value=4.2e-16  Score=119.90  Aligned_cols=113  Identities=16%  Similarity=0.159  Sum_probs=81.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC--CCC------C-----C-----CccceeEeEEEEEEECCEEEEEEEEeCCCchh
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDE--FYP------N-----S-----KSTIGVEFQTQKMDINGKEVKAQIWDTAGQER   75 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~--~~~------~-----~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   75 (223)
                      ..+|+|+|+.++|||||+.+|+...  ...      .     +     ....+.......+..++  ..+.++||||+..
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~d   79 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGG
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhh
Confidence            3589999999999999999996321  110      0     0     01112223333444455  5678999999999


Q ss_pred             hhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                      |.......++.+|++|+|+|..+.-.-...+.|......    ++|.++++||+|..
T Consensus        80 F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~----~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          80 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL----GLPRMVVVTKLDKG  132 (267)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT----TCCEEEEEECGGGC
T ss_pred             hhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhc----cccccccccccccc
Confidence            999999999999999999999987666665555433322    68999999999964

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.64  E-value=6.9e-16  Score=117.74  Aligned_cols=157  Identities=17%  Similarity=0.139  Sum_probs=83.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------CCCccceeEeEEEEEEECCEE
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDE--FYP---------------------------NSKSTIGVEFQTQKMDINGKE   62 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~   62 (223)
                      ...++|+++|+.++|||||+.+|+...  +..                           ......+.+.......+....
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            457899999999999999999995311  000                           000000111111112222233


Q ss_pred             EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhh---HH---HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQT---FD---SIGRWLNELHTHSDMNVVTILVGNKSDLKDAR-  135 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-  135 (223)
                      ..+.++|+||+..|..........+|++|+|+|+.+...   +.   .....+..+... . -.++++++||+|+.... 
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~-~-i~~iiv~iNKmD~~~~~~  179 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ-G-INHLVVVINKMDEPSVQW  179 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT-T-CSSEEEEEECTTSTTCSS
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc-C-CCeEEEEEEcCCCCccch
Confidence            568899999999999999999999999999999987421   10   111112222222 1 23477889999987432 


Q ss_pred             -ccCHHH----HHHHHHHc-------CCeEEEEccCCCCCHHHHHHH
Q 027417          136 -EVTTAE----GKALAEAQ-------GLFFMETSALDSSNVTAAFQT  170 (223)
Q Consensus       136 -~~~~~~----~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~  170 (223)
                       +-..++    ...+....       .++++++||++|+||.++++.
T Consensus       180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence             111122    22222222       257999999999999876543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.61  E-value=1.3e-15  Score=114.88  Aligned_cols=150  Identities=21%  Similarity=0.191  Sum_probs=93.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCccceeEeEEEEEEECCE
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEF-------------------------------YPNSKSTIGVEFQTQKMDINGK   61 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   61 (223)
                      +.++|+++|+.++|||||+.+|+...-                               ....  ..|.+.......+...
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~--~rg~ti~~~~~~~~~~   79 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEER--ERGVTINLTFMRFETK   79 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhh--cCCccccceEEEEecC
Confidence            468999999999999999999863110                               0000  1122333333333444


Q ss_pred             EEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhH------HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTF------DSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      .+.+.++||||+..|.......+..+|++|+|+|+.+...-      ......+...... . ..++|++.||+|+....
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~-~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-G-LDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-T-CTTCEEEEECGGGSSST
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-C-CCceEEEEEcccCCCcc
Confidence            56788999999999999999999999999999999985211      1111111111111 1 35688899999987421


Q ss_pred             --ccCH----HHHHHHHHHcC-----CeEEEEccCCCCCHHH
Q 027417          136 --EVTT----AEGKALAEAQG-----LFFMETSALDSSNVTA  166 (223)
Q Consensus       136 --~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  166 (223)
                        +...    .+...+....+     ++++++||.+|.|+.+
T Consensus       158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence              1111    22333434333     4689999999998853

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.3e-14  Score=118.23  Aligned_cols=158  Identities=9%  Similarity=0.109  Sum_probs=90.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccce---eEeEEEEEEECCEEEEEEEEeCCCchhhhchh-----Hhh
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIG---VEFQTQKMDINGKEVKAQIWDTAGQERFRAVT-----SAY   83 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~-----~~~   83 (223)
                      ...++|+|+|.+|||||||+|+|+|...........+   ++.....+... ....+.+|||||........     ...
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~  132 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMK  132 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhh
Confidence            3469999999999999999999998654332221112   22222222222 22246699999965432222     223


Q ss_pred             hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-------CcccCHH----HHH----HHHHH
Q 027417           84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD-------AREVTTA----EGK----ALAEA  148 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~----~~~----~~~~~  148 (223)
                      +..+|++|++.|..-...-   ..+...+...   ++|+++|.||+|...       ......+    +.+    .....
T Consensus       133 ~~~~d~~l~~~~~~~~~~d---~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~  206 (400)
T d1tq4a_         133 FYEYDFFIIISATRFKKND---IDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  206 (400)
T ss_dssp             GGGCSEEEEEESSCCCHHH---HHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcceEEEEecCCCCCHHH---HHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHH
Confidence            4678988888775432221   2233333332   689999999999531       0111111    111    11223


Q ss_pred             cCC---eEEEEccCC--CCCHHHHHHHHHHHHH
Q 027417          149 QGL---FFMETSALD--SSNVTAAFQTVVTEIY  176 (223)
Q Consensus       149 ~~~---~~~~~Sa~~--~~~i~~~~~~l~~~~~  176 (223)
                      .++   ++|.+|..+  ..++.++.+.+.+.+.
T Consensus       207 ~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         207 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             cCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence            333   478888754  4588888888876653

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=7.6e-15  Score=116.46  Aligned_cols=122  Identities=18%  Similarity=0.182  Sum_probs=84.4

Q ss_pred             ccccCCeeeEEEEEcCCCCCHHHHHHHHhcC--CCCC--------------CCCccceeEeEEEEEEE------------
Q 027417            7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARD--EFYP--------------NSKSTIGVEFQTQKMDI------------   58 (223)
Q Consensus         7 ~~~~~~~~~~i~i~G~~~sGKStli~~l~~~--~~~~--------------~~~~~~~~~~~~~~~~~------------   58 (223)
                      +.+..+...+|+|+|+.++|||||+++|+..  ....              +.....+..........            
T Consensus        10 lm~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~   89 (341)
T d1n0ua2          10 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQ   89 (341)
T ss_dssp             HHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSS
T ss_pred             HhcCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhc
Confidence            3344455567999999999999999999631  1100              00001111111111111            


Q ss_pred             --CCEEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027417           59 --NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK  132 (223)
Q Consensus        59 --~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  132 (223)
                        ++..+.++++||||+..|.......++-+|++|+|+|+.++-..+..+-|......    +.|+++++||+|..
T Consensus        90 ~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~----~~p~i~viNKiDr~  161 (341)
T d1n0ua2          90 KTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE----RIKPVVVINKVDRA  161 (341)
T ss_dssp             CCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT----TCEEEEEEECHHHH
T ss_pred             cccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc----CCCeEEEEECcccc
Confidence              33567899999999999999999999999999999999997666665555544433    68999999999964

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.53  E-value=1.3e-14  Score=111.46  Aligned_cols=127  Identities=12%  Similarity=0.114  Sum_probs=76.7

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-ccceeEeEEEEEEECCEEEEEEEEeCCCchhhhc-------hhH
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA-------VTS   81 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~   81 (223)
                      .....++|+|+|.+|||||||+|+|++........ +..+...........+  ..+.++||||......       ...
T Consensus        28 ~~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~  105 (257)
T d1h65a_          28 EDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIK  105 (257)
T ss_dssp             TTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHH
T ss_pred             cCCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHH
Confidence            34567999999999999999999999876554332 2222333344445555  4677999999432111       111


Q ss_pred             hh--hcCCCEEEEEEECCCHh-h--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 027417           82 AY--YRGAVGALLVYDISRRQ-T--FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT  139 (223)
Q Consensus        82 ~~--~~~~d~~i~v~d~~~~~-s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~  139 (223)
                      ..  ....+++++|++++... +  -.....++..+... ..-.++++|.||+|.........
T Consensus       106 ~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~-~~~~~~ivv~t~~D~~~~~~~~~  167 (257)
T d1h65a_         106 SFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK-GIWNKAIVALTHAQFSPPDGLPY  167 (257)
T ss_dssp             HHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECCSCCCGGGCCH
T ss_pred             HHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcch-hhhhCEEEEEECcccCCcCCCcH
Confidence            11  23578888998887531 1  11122222222211 11357899999999876544443

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.35  E-value=4.1e-12  Score=100.10  Aligned_cols=155  Identities=15%  Similarity=0.121  Sum_probs=89.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhcCCC-----------CCCCCcc---------------ceeEeEEEEEEECC----
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFARDEF-----------YPNSKST---------------IGVEFQTQKMDING----   60 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~----   60 (223)
                      ....++|.|.|+||||||||+++|.....           ++....+               .....+.......+    
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg  127 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG  127 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccc
Confidence            35679999999999999999999874210           0000000               00011111111000    


Q ss_pred             --------------EEEEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEE
Q 027417           61 --------------KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVG  126 (223)
Q Consensus        61 --------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~  126 (223)
                                    .++.+.|++|.|.-..   .......+|.+++|..+...+..+...   ..+.+     .+=++|+
T Consensus       128 ~~~~~~~~i~~~~~~g~d~iiiETVG~gq~---e~~~~~~~D~~v~v~~p~~GD~iQ~~k---~gilE-----~aDi~vv  196 (323)
T d2qm8a1         128 VAAKTRETMLLCEAAGFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIK---KGIFE-----LADMIAV  196 (323)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CC---TTHHH-----HCSEEEE
T ss_pred             hhHHHHHHHHhhccCCCCeEEEeehhhhhh---hhhhhcccceEEEEeeccchhhhhhhh---hhHhh-----hhheeeE
Confidence                          1245678888874332   222335699999999998876544321   12222     3349999


Q ss_pred             eCCCCCCCcccCHHHHHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027417          127 NKSDLKDAREVTTAEGKALAEA----------QGLFFMETSALDSSNVTAAFQTVVTEIY  176 (223)
Q Consensus       127 nK~Dl~~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  176 (223)
                      ||+|+.............+...          +..+++.+||+++.|++++++.|.+...
T Consensus       197 NKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         197 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             eccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            9999876543322222222221          3456999999999999999999976543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=4.5e-12  Score=100.00  Aligned_cols=100  Identities=14%  Similarity=0.101  Sum_probs=57.4

Q ss_pred             EEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHH
Q 027417           65 AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT--TAEG  142 (223)
Q Consensus        65 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~  142 (223)
                      +.|++|.|....   -..+...+|.+++|.++...+..+....   .+.+.     +=++|+||+|+.......  ..+.
T Consensus       149 ~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~---gi~e~-----aDi~VvNKaD~~~~~~~~~~~~~~  217 (327)
T d2p67a1         149 VVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKK---GLMEV-----ADLIVINKDDGDNHTNVAIARHMY  217 (327)
T ss_dssp             EEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCH---HHHHH-----CSEEEECCCCTTCHHHHHHHHHHH
T ss_pred             eEEEeecccccc---chhhhhccceEEEEecCCCchhhhhhch---hhhcc-----ccEEEEEeecccchHHHHHHHHHH
Confidence            556666653222   1234567999999998766544433322   23322     338889999987532211  1111


Q ss_pred             HHHHH-------HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          143 KALAE-------AQGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       143 ~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      .....       .+..+++.|||.+|.|++++++.|.+..
T Consensus       218 ~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         218 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            21111       2335799999999999999999997544

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.30  E-value=1.7e-11  Score=95.80  Aligned_cols=86  Identities=15%  Similarity=0.193  Sum_probs=60.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCccceeEeEEEEEEECC---------------EEEEEEEEeCCCchh-
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDING---------------KEVKAQIWDTAGQER-   75 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~D~~G~~~-   75 (223)
                      ..++|.|+|.|+||||||+++|++... .....|+++.+.....+.+.+               ....+.+.|+||... 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            458999999999999999999997654 334444445444444455443               234688999998322 


Q ss_pred             ------hhchhHhhhcCCCEEEEEEECCC
Q 027417           76 ------FRAVTSAYYRGAVGALLVYDISR   98 (223)
Q Consensus        76 ------~~~~~~~~~~~~d~~i~v~d~~~   98 (223)
                            ........++.+|++|+|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  23345556699999999999855

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.30  E-value=2.3e-11  Score=94.09  Aligned_cols=83  Identities=19%  Similarity=0.137  Sum_probs=56.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCE---------------EEEEEEEeCCCchh---
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQER---   75 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~---   75 (223)
                      .++|.|||-|+||||||+++|++........|+++.+.....+.+.+.               ...+.++|+||.-.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999987765554455444444444444432               23588999999321   


Q ss_pred             ----hhchhHhhhcCCCEEEEEEEC
Q 027417           76 ----FRAVTSAYYRGAVGALLVYDI   96 (223)
Q Consensus        76 ----~~~~~~~~~~~~d~~i~v~d~   96 (223)
                          ........++.+|++|+|+|.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence                333445667899999999986

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.29  E-value=1e-12  Score=99.59  Aligned_cols=110  Identities=13%  Similarity=-0.027  Sum_probs=66.2

Q ss_pred             EEEEEeCCCchhhhchhHhh-----hcCCCEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           64 KAQIWDTAGQERFRAVTSAY-----YRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        64 ~~~l~D~~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      .+.++|+||+..+.......     ....+.+++++|...   +..+............  ....|.++|+||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~--~~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH--HhCCCceeeeeccccccHH
Confidence            47799999987654432221     235678899999754   4333322221111111  1258899999999987632


Q ss_pred             ccCHH-----------------------HHHHH---HH--HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027417          136 EVTTA-----------------------EGKAL---AE--AQGLFFMETSALDSSNVTAAFQTVVTEI  175 (223)
Q Consensus       136 ~~~~~-----------------------~~~~~---~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  175 (223)
                      +....                       ....+   ..  ...++++++||++|+|+++++..|.++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            21100                       00000   11  2356799999999999999999887653

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=1.7e-10  Score=89.95  Aligned_cols=118  Identities=20%  Similarity=0.221  Sum_probs=73.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccceeEeEEEEEEEC----------C----------------------
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDIN----------G----------------------   60 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~----------~----------------------   60 (223)
                      .++|+|+|..++|||||+|+|++..+. ....+++..........-.          +                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            568999999999999999999998863 3444443322222111100          0                      


Q ss_pred             -----------------EEEEEEEEeCCCchhh-------------hchhHhhhcCCC-EEEEEEECCCHhhHHHHHHHH
Q 027417           61 -----------------KEVKAQIWDTAGQERF-------------RAVTSAYYRGAV-GALLVYDISRRQTFDSIGRWL  109 (223)
Q Consensus        61 -----------------~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~  109 (223)
                                       ....+.|+|+||....             ..+...++.+.+ ++++|.+.....+-.....+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                             0112779999994321             133444556666 556677776665555555665


Q ss_pred             HHHhhcCCCCCcEEEEEeCCCCCCC
Q 027417          110 NELHTHSDMNVVTILVGNKSDLKDA  134 (223)
Q Consensus       110 ~~i~~~~~~~~p~ivv~nK~Dl~~~  134 (223)
                      +.+.   ....++++|.||+|..+.
T Consensus       186 ~~~~---~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         186 KEVD---PQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHC---TTCSSEEEEEECGGGSCT
T ss_pred             HHhC---cCCCceeeEEeccccccc
Confidence            5543   335789999999998754

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=1.5e-10  Score=91.17  Aligned_cols=84  Identities=15%  Similarity=0.098  Sum_probs=45.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEE----------------------ECCEEEEEEEEeCCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMD----------------------INGKEVKAQIWDTAG   72 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~D~~G   72 (223)
                      ++|+|+|.|+||||||+|+|++........|+++.+.......                      .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4899999999999999999998766555445433322211110                      011346789999999


Q ss_pred             chh-------hhchhHhhhcCCCEEEEEEECCC
Q 027417           73 QER-------FRAVTSAYYRGAVGALLVYDISR   98 (223)
Q Consensus        73 ~~~-------~~~~~~~~~~~~d~~i~v~d~~~   98 (223)
                      .-.       ........++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            422       12222334578999999999863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.96  E-value=2e-09  Score=84.06  Aligned_cols=117  Identities=22%  Similarity=0.265  Sum_probs=68.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCccceeEeEEEEEE-----------------------------------
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARDEFYPN-SKSTIGVEFQTQKMD-----------------------------------   57 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~-----------------------------------   57 (223)
                      .++|+|+|..++|||||+|+|+|..+.+. ..+++..........                                   
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            46899999999999999999999876432 222222111111000                                   


Q ss_pred             ------------ECC----------EEEEEEEEeCCCchh-------------hhchhHhhhcCCCEEEEEE-ECCCHhh
Q 027417           58 ------------ING----------KEVKAQIWDTAGQER-------------FRAVTSAYYRGAVGALLVY-DISRRQT  101 (223)
Q Consensus        58 ------------~~~----------~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s  101 (223)
                                  +..          ....+.++|+||...             ...+...++.+++.+|+++ +......
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~  183 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence                        000          011367999999432             1234556778898766655 4443333


Q ss_pred             HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417          102 FDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus       102 ~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      -.....+.+.+.   ....++++|.||+|..+
T Consensus       184 ~~~~~~~~~~~~---~~~~r~i~Vitk~D~~~  212 (306)
T d1jwyb_         184 NSDALQLAKEVD---PEGKRTIGVITKLDLMD  212 (306)
T ss_dssp             TCSHHHHHHHHC---SSCSSEEEEEECTTSSC
T ss_pred             ccHHHHHHHHhC---cCCCeEEEEEecccccc
Confidence            333344444443   33568999999999864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.68  E-value=8.5e-09  Score=79.16  Aligned_cols=60  Identities=23%  Similarity=0.405  Sum_probs=38.5

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCc
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ   73 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   73 (223)
                      .....++|+|+|.|+||||||+|+|.+........ ..|++.....+..+.   .+.++||||.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~-~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEECC-cccccccceEEECCC---CeEEecCCCc
Confidence            34567999999999999999999999876644333 336666555555443   3669999994

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.47  E-value=1.3e-06  Score=61.87  Aligned_cols=23  Identities=26%  Similarity=0.694  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      +||+|+|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999873

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=4.1e-08  Score=72.47  Aligned_cols=59  Identities=22%  Similarity=0.163  Sum_probs=36.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCC------ccceeEeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNSK------STIGVEFQTQKMDINGKEVKAQIWDTAGQERFR   77 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   77 (223)
                      ..+++|++|||||||+|+|.+........      ...-++.....+.+++..+   ++||||...+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~---iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGY---VVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCE---EESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCcE---EEeCCcccccc
Confidence            56899999999999999998753322111      0111222333444554444   99999976543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=1.1e-06  Score=64.61  Aligned_cols=83  Identities=19%  Similarity=0.182  Sum_probs=60.4

Q ss_pred             hcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH--HcCCeEEEEccCC
Q 027417           84 YRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE--AQGLFFMETSALD  160 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~  160 (223)
                      ..+.|.+++|+++.+|. +...+..|+-.....   +++++||.||+|+.+..+  .+....+..  ..+.+++.+|+++
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa~~   82 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKT   82 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTT
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEecccc
Confidence            46899999999998865 456667776665443   689999999999975322  222223333  2346789999999


Q ss_pred             CCCHHHHHHHH
Q 027417          161 SSNVTAAFQTV  171 (223)
Q Consensus       161 ~~~i~~~~~~l  171 (223)
                      +.|++++.+.+
T Consensus        83 ~~g~~~L~~~l   93 (225)
T d1u0la2          83 GMGIEELKEYL   93 (225)
T ss_dssp             CTTHHHHHHHH
T ss_pred             chhHhhHHHHh
Confidence            99999998876

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=1.8e-06  Score=63.11  Aligned_cols=91  Identities=18%  Similarity=0.092  Sum_probs=53.6

Q ss_pred             EEEEEEeCCCchhhhchhH----hh---hc-----CCCEEEEEEECCCH-hhHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q 027417           63 VKAQIWDTAGQERFRAVTS----AY---YR-----GAVGALLVYDISRR-QTFDSIGRWLNELHTHSDMNVVTILVGNKS  129 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~----~~---~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~  129 (223)
                      +.+.|+||+|...+.....    .+   ..     ..+-.++|+|.+.. +.+..+...+..+       -+--+|.||.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV-------NVTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS-------CCCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc-------CCceEEEecc
Confidence            4578999999443322211    11   11     25678899998764 3344443333332       2346889999


Q ss_pred             CCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417          130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus       130 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      |...    ..-.+..++...+.|+..++  +|.++++
T Consensus       167 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         167 DGTA----KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GGCS----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cCCC----cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9642    23445666778899977766  4655644

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=4.7e-06  Score=60.70  Aligned_cols=91  Identities=14%  Similarity=0.083  Sum_probs=54.2

Q ss_pred             EEEEEEeCCCchhhhchh-------Hhhhc-----CCCEEEEEEECCCH-hhHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q 027417           63 VKAQIWDTAGQERFRAVT-------SAYYR-----GAVGALLVYDISRR-QTFDSIGRWLNELHTHSDMNVVTILVGNKS  129 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~-------~~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~  129 (223)
                      +.+.|+||+|........       .....     ..+-.++|+|.+.. +....+...+..+       -+--+|.||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------GLTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------CCCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-------CCceEEEeec
Confidence            457799999954332211       11122     35678889998764 3444444444332       2346889999


Q ss_pred             CCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417          130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus       130 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      |...    ..=.+...+...++|+..++  .|+++++
T Consensus       165 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTA----KGGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCT----TTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9653    23445566778899977776  5656644

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.17  E-value=1.9e-07  Score=69.13  Aligned_cols=58  Identities=22%  Similarity=0.292  Sum_probs=31.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCC------CccceeEeEEEEEEECCEEEEEEEEeCCCchhhh
Q 027417           16 KVVLIGDSAVGKSNLLARFARDEFYPNS------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR   77 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~   77 (223)
                      ..+++|++|||||||+|+|.+.......      ....-++.....+..++ ++   ++||||...+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g-g~---iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG-GL---VADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT-EE---EESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC-CE---EEECCcccccc
Confidence            4579999999999999999875322111      00000111122233454 33   88999976653

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=1.8e-05  Score=58.19  Aligned_cols=93  Identities=6%  Similarity=0.005  Sum_probs=49.0

Q ss_pred             EEEEeCCCchhhhchhHhh--------hcCCCEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           65 AQIWDTAGQERFRAVTSAY--------YRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        65 ~~l~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      ..++++.|......+....        .-..+.+|.++|+.+......- ..+..++. ..     =++|+||+|+.+. 
T Consensus        92 ~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~-~A-----D~ivlNK~Dl~~~-  164 (222)
T d1nija1          92 RLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-YA-----DRILLTKTDVAGE-  164 (222)
T ss_dssp             EEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHH-TC-----SEEEEECTTTCSC-
T ss_pred             eeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHH-hC-----CcccccccccccH-
Confidence            3567777754333222111        1236788999999875432211 22223332 22     2789999998753 


Q ss_pred             ccCHHHHHHHHHHcC--CeEEEEccCCCCCHHHHH
Q 027417          136 EVTTAEGKALAEAQG--LFFMETSALDSSNVTAAF  168 (223)
Q Consensus       136 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~  168 (223)
                         .+..++..+..+  +++++++ .-...+..+|
T Consensus       165 ---~~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~ll  195 (222)
T d1nija1         165 ---AEKLHERLARINARAPVYTVT-HGDIDLGLLF  195 (222)
T ss_dssp             ---THHHHHHHHHHCSSSCEEECC-SSCCCGGGGS
T ss_pred             ---HHHHHHHHHHHhCCCeEEEee-CCccCHHHhh
Confidence               234444555554  4576544 3334555554

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.13  E-value=6.5e-06  Score=59.84  Aligned_cols=91  Identities=11%  Similarity=0.030  Sum_probs=53.3

Q ss_pred             EEEEEEeCCCchhhhchh----Hhh---h-----cCCCEEEEEEECCCH-hhHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q 027417           63 VKAQIWDTAGQERFRAVT----SAY---Y-----RGAVGALLVYDISRR-QTFDSIGRWLNELHTHSDMNVVTILVGNKS  129 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~----~~~---~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~  129 (223)
                      +.+.|+||+|...+....    ..+   .     ...+-+++|+|.+.. +....+...+..+.       +--+|.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~-------~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC-------CceEEEecc
Confidence            457799999954432211    111   1     246778889998764 34555555555432       236789999


Q ss_pred             CCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417          130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus       130 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                      |...    ..=.+..++...+.|+..++.  |++.++
T Consensus       162 Det~----~~G~~l~~~~~~~~Pi~~i~~--Gq~p~D  192 (207)
T d1okkd2         162 DGTA----KGGVLIPIVRTLKVPIKFVGV--GEGPDD  192 (207)
T ss_dssp             TSSC----CCTTHHHHHHHHCCCEEEEEC--SSSTTC
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEeC--CCChHh
Confidence            9653    223345566778999766653  444443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.12  E-value=7.6e-06  Score=59.64  Aligned_cols=91  Identities=16%  Similarity=0.138  Sum_probs=54.7

Q ss_pred             EEEEEEeCCCchhhhc------hhHhh--hcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027417           63 VKAQIWDTAGQERFRA------VTSAY--YRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD  133 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  133 (223)
                      ..+.|+||+|...+..      .....  ....+-+++|+|.+... ..+.+...+..+       .+--+|.||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS-------KIGTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC-------TTEEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc-------CcceEEEecccCCC
Confidence            4678999999543321      11111  12467788888887653 333333333221       22357799999653


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027417          134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTA  166 (223)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (223)
                          ..=.+..++...++|+..++  +|.++++
T Consensus       168 ----~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ----KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ----CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence                45666777888899977766  4666654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.07  E-value=4.5e-06  Score=63.53  Aligned_cols=93  Identities=14%  Similarity=0.100  Sum_probs=64.5

Q ss_pred             hhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027417           79 VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA  158 (223)
Q Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (223)
                      .....++.+|++|+|+|+.+|.+...  ..+..+.   . ++|+|+|+||+|+....  ..++..+.....+...+.+|+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~---~-~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa   79 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL---K-NKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINS   79 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC---S-SSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCT
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH---c-CCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeec
Confidence            34556889999999999998866432  1122222   1 57999999999998532  122233334555678999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q 027417          159 LDSSNVTAAFQTVVTEIYNIL  179 (223)
Q Consensus       159 ~~~~~i~~~~~~l~~~~~~~~  179 (223)
                      .++.+...+.+.+.+.+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~  100 (273)
T d1puja_          80 VNGQGLNQIVPASKEILQEKF  100 (273)
T ss_dssp             TTCTTGGGHHHHHHHHHHHHH
T ss_pred             ccCCCccccchhhhhhhhhhh
Confidence            999999988888776655443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.98  E-value=1.7e-05  Score=57.60  Aligned_cols=84  Identities=20%  Similarity=0.120  Sum_probs=50.5

Q ss_pred             EEEEEEeCCCchhhhchh----Hhh--hcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027417           63 VKAQIWDTAGQERFRAVT----SAY--YRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR  135 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  135 (223)
                      ..+.|+||+|........    ..+  ..+.+-+++|.|.+... ..+.+..+++.+.       +--+|.||.|...  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~-------~~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------VTGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC-------CCEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC-------CCeeEEeecCccc--
Confidence            357799999954432211    111  24678889999987653 3443333333321       2248889999543  


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEc
Q 027417          136 EVTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~S  157 (223)
                        ..-.+..++...+.|+..++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC
T ss_pred             --cchHHHHHHHHHCCCEEEEe
Confidence              34555667788899876654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.91  E-value=2.2e-06  Score=63.29  Aligned_cols=85  Identities=15%  Similarity=0.161  Sum_probs=61.3

Q ss_pred             hcCCCEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHcCCeEEEEccCC
Q 027417           84 YRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT--TAEGKALAEAQGLFFMETSALD  160 (223)
Q Consensus        84 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~  160 (223)
                      ..+.|.+++|+++.+|. ++..+..++-.....   +++++||+||+|+.+..+..  .+...+.....+.+++.+|+++
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~   84 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD   84 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCC
Confidence            36899999999998865 466677776665433   68999999999998642211  1112233455689999999999


Q ss_pred             CCCHHHHHHHH
Q 027417          161 SSNVTAAFQTV  171 (223)
Q Consensus       161 ~~~i~~~~~~l  171 (223)
                      +.|++++.+.|
T Consensus        85 ~~gl~~L~~~l   95 (231)
T d1t9ha2          85 QDSLADIIPHF   95 (231)
T ss_dssp             HTTCTTTGGGG
T ss_pred             hhHHHHHHHhh
Confidence            99998887655

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.69  E-value=1.1e-05  Score=56.44  Aligned_cols=26  Identities=15%  Similarity=0.332  Sum_probs=22.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .+..++|+|.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            35668999999999999999998865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.65  E-value=1e-05  Score=57.12  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-+|+|.|++|||||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999976

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.62  E-value=1.3e-05  Score=55.95  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .++|+|+|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.54  E-value=2.6e-05  Score=55.69  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..++|+|+|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999998874

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.5e-05  Score=54.27  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      +-|+|+|.+|||||||+++|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3589999999999999999975

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.49  E-value=2.9e-05  Score=54.79  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.44  E-value=3.6e-05  Score=52.61  Aligned_cols=20  Identities=30%  Similarity=0.449  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      |+|.|+||||||||++.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999998865

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.43  E-value=4.8e-05  Score=54.36  Aligned_cols=26  Identities=19%  Similarity=0.501  Sum_probs=22.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ....++|+|+|+|||||||+...|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            34568999999999999999998876

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.40  E-value=4.5e-05  Score=53.93  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.40  E-value=4.5e-05  Score=54.00  Aligned_cols=23  Identities=26%  Similarity=0.484  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.36  E-value=4.1e-05  Score=54.58  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      +++|+|+|+|||||||++..|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=5.8e-05  Score=53.35  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998865

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=5.4e-05  Score=53.35  Aligned_cols=22  Identities=18%  Similarity=0.447  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ++|+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988854

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.33  E-value=6.9e-05  Score=53.48  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      +..|+|+|+|||||||+.+.|..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998865

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.33  E-value=5.6e-05  Score=52.46  Aligned_cols=21  Identities=33%  Similarity=0.490  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -|+|.|++||||||+++.|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999998875

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=6.7e-05  Score=51.49  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      +|+|+|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.23  E-value=6.8e-05  Score=52.18  Aligned_cols=22  Identities=41%  Similarity=0.525  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ++|+++|.+||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999887754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00011  Score=52.44  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00093  Score=50.38  Aligned_cols=62  Identities=19%  Similarity=0.161  Sum_probs=40.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcCCC--CCC---CCccceeEeEEEEEEECCEEEEEEEEeCCCch
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARDEF--YPN---SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE   74 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   74 (223)
                      .+..-|.|+|+.++|||+|+|.|.+...  ...   ...|.|+-.....+ ..+....+.++||.|..
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEeccccc
Confidence            4466789999999999999999997653  111   12344443322222 23445567899999953

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=0.0001  Score=51.73  Aligned_cols=25  Identities=24%  Similarity=0.215  Sum_probs=21.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      +...-|+++|.|||||||+++.+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4456789999999999999998864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.17  E-value=0.00011  Score=51.05  Aligned_cols=20  Identities=20%  Similarity=0.456  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      +.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999998875

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0001  Score=51.54  Aligned_cols=21  Identities=33%  Similarity=0.594  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00013  Score=54.00  Aligned_cols=22  Identities=32%  Similarity=0.389  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .|+|+|++|||||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999988873

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.10  E-value=0.00013  Score=52.36  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-|+++|.||||||||.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999998874

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.0002  Score=51.07  Aligned_cols=24  Identities=13%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...-|+|+|+|||||||+...|..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999998875

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=5e-05  Score=53.75  Aligned_cols=21  Identities=24%  Similarity=0.540  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |+|+||+||||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999853

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.08  E-value=0.0002  Score=49.85  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=21.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..-+-|.|+|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457789999999999999988764

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.08  E-value=0.00013  Score=50.52  Aligned_cols=21  Identities=38%  Similarity=0.551  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=0.0015  Score=47.95  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ...+++.|++|+||||+++.+...
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999988653

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=0.00016  Score=51.36  Aligned_cols=21  Identities=38%  Similarity=0.646  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |+|+|++||||+||++.|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.02  E-value=0.00018  Score=50.46  Aligned_cols=21  Identities=24%  Similarity=0.210  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -|+|.|++||||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999998854

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.02  E-value=0.00017  Score=50.90  Aligned_cols=21  Identities=48%  Similarity=0.599  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |+|+||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999998754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00018  Score=49.87  Aligned_cols=20  Identities=40%  Similarity=0.519  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      ++|+|++||||||+.+.|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56799999999999998875

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.00  E-value=0.00018  Score=51.79  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            4689999999999999999874

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.00  E-value=0.00019  Score=49.82  Aligned_cols=20  Identities=30%  Similarity=0.516  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      |+|.|++||||||+.+.|..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77999999999999998865

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.99  E-value=0.0002  Score=53.06  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      =.++|+|+.|||||||++.+.+-
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999988764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.0002  Score=52.59  Aligned_cols=22  Identities=45%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|+.|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            3689999999999999988774

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.96  E-value=0.00021  Score=53.38  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|++|||||||++.|.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999988763

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.95  E-value=0.00026  Score=51.96  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|+.|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4689999999999999977774

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.94  E-value=0.00023  Score=52.47  Aligned_cols=22  Identities=36%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027417           17 VVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~   38 (223)
                      ++|+|+.|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999999998843

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00023  Score=53.01  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .++|+|+.|||||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6799999999999999988773

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.92  E-value=0.00025  Score=49.15  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999988763

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.00026  Score=50.39  Aligned_cols=20  Identities=50%  Similarity=0.695  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      |+|+||+|||||||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.90  E-value=0.00029  Score=52.56  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      +.-|++.|+||+|||||++++.+
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            44599999999999999998876

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.89  E-value=0.00027  Score=52.12  Aligned_cols=23  Identities=39%  Similarity=0.458  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            37899999999999999888753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.87  E-value=0.00026  Score=50.41  Aligned_cols=22  Identities=14%  Similarity=0.338  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-|+|+|+|||||||+...|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999998865

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.00027  Score=53.51  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .|+|+|+.|||||||++.+.+.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4899999999999999998874

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.00032  Score=51.55  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=21.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .....+++.||||+||||+++.+..
T Consensus        33 ~~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          33 EPLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             SCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998875

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.85  E-value=0.00038  Score=49.20  Aligned_cols=24  Identities=21%  Similarity=0.213  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..+-|+|.|++|||||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999998865

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.84  E-value=0.00031  Score=48.93  Aligned_cols=21  Identities=19%  Similarity=0.455  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998854

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00032  Score=50.64  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -|+|+||+|||||||++.|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.83  E-value=0.00032  Score=51.80  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            46899999999999999888743

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00028  Score=52.06  Aligned_cols=22  Identities=32%  Similarity=0.282  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|+.|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4689999999999999988874

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.78  E-value=0.001  Score=45.62  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ..-|++-|+-|||||||++.+...
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHhh
Confidence            345889999999999999988754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.76  E-value=0.0003  Score=51.53  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 027417           17 VVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~~   38 (223)
                      ++|+|+.|||||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            6899999999999999998843

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.76  E-value=0.00035  Score=51.64  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|+.|+|||||++.+.+-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3689999999999999999884

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.75  E-value=0.00039  Score=51.04  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...+++.||||+||||+++.+..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHh
Confidence            45689999999999999998875

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00045  Score=49.23  Aligned_cols=24  Identities=33%  Similarity=0.542  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-+++++|+||+|||++++.|...
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHH
Confidence            357899999999999999887754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.72  E-value=0.00034  Score=54.10  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .+|+|.|++|||||||+++|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999863

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.72  E-value=0.00026  Score=52.85  Aligned_cols=21  Identities=38%  Similarity=0.548  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .|+|+|+.|||||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999997776

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00018  Score=50.90  Aligned_cols=23  Identities=26%  Similarity=0.250  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..-|.|+|.|||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999998864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0003  Score=51.74  Aligned_cols=21  Identities=48%  Similarity=0.665  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      ++|+|+.|||||||++.+.+.
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            689999999999999999873

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.00059  Score=50.32  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      -++|+|+.|+|||||++.+.+..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999988753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.65  E-value=0.00048  Score=51.46  Aligned_cols=22  Identities=32%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|+|+.|||||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4689999999999999999874

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.63  E-value=0.00058  Score=49.40  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .+.|+|-|+|||||||+...|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47888999999999999998865

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.61  E-value=0.0005  Score=48.22  Aligned_cols=21  Identities=38%  Similarity=0.553  Sum_probs=17.3

Q ss_pred             EEE-EEcCCCCCHHHHHHHHhc
Q 027417           16 KVV-LIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~-i~G~~~sGKStli~~l~~   36 (223)
                      ||+ |.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            554 579999999999998854

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00059  Score=51.17  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      .-+++++|+||+|||++++.|...
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHH
Confidence            358999999999999999887754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.59  E-value=0.00054  Score=51.08  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      ++|+|+.|||||||++.+.+.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            689999999999999999885

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.55  E-value=0.00038  Score=51.38  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      .++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999988843

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00081  Score=48.42  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.50  E-value=0.00097  Score=49.38  Aligned_cols=23  Identities=39%  Similarity=0.550  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|++.|+||+|||+|++++..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            46799999999999999999875

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.48  E-value=0.00087  Score=47.50  Aligned_cols=27  Identities=26%  Similarity=0.493  Sum_probs=22.8

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ....++-|+|-|..||||||+++.|..
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            345567899999999999999998875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.0013  Score=48.52  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ....+++.||||+||||+++++..
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999886

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.43  E-value=0.001  Score=48.49  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..++|.|++|+||||+++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999998865

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.38  E-value=0.0012  Score=48.84  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=21.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ...-.++|.|++|+|||++++.+...
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            34457999999999999999988764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.35  E-value=0.00094  Score=51.18  Aligned_cols=23  Identities=30%  Similarity=0.626  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-.|+++||||+|||.|++++..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            35689999999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.30  E-value=0.001  Score=49.51  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|.|+||+|||++++.+...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3456799999999999988753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.28  E-value=0.0016  Score=45.86  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .++-|+|.|.+||||||+++.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457789999999999999998765

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0011  Score=47.63  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      =|+|.|+|||||||+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            567889999999999998865

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.18  E-value=0.0014  Score=48.61  Aligned_cols=22  Identities=36%  Similarity=0.511  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      --|++.|+||+|||+|++++..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3589999999999999999986

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.17  E-value=0.06  Score=39.53  Aligned_cols=88  Identities=10%  Similarity=0.033  Sum_probs=51.3

Q ss_pred             EEEEEEeCCCchhhhc-hhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcE-EEEEeCCCCCCCcccCH
Q 027417           63 VKAQIWDTAGQERFRA-VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVT-ILVGNKSDLKDAREVTT  139 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~-ivv~nK~Dl~~~~~~~~  139 (223)
                      +.+.++|+|+.-.... ........+|.++++.+. +..++..+......+.... ..+.++ -++.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            4577999986433222 233333568888877776 4556665555554444332 123333 36789887554    24


Q ss_pred             HHHHHHHHHcCCeEEE
Q 027417          140 AEGKALAEAQGLFFME  155 (223)
Q Consensus       140 ~~~~~~~~~~~~~~~~  155 (223)
                      +..+.+.+..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            5566777788887654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0016  Score=47.45  Aligned_cols=22  Identities=14%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..++|.|++|+||||+++.+..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHH
Confidence            3589999999999999998875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.07  E-value=0.0015  Score=48.37  Aligned_cols=22  Identities=18%  Similarity=0.188  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      --|+|.|++|+|||||++++..
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            3578999999999999998864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0017  Score=47.01  Aligned_cols=22  Identities=18%  Similarity=0.359  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..+++.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            4589999999999999987764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0019  Score=48.06  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      -.+++.|+||+|||++++++..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            4589999999999999999875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.97  E-value=0.0023  Score=47.61  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..-|++.|+||+|||++++++..
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHH
Confidence            35699999999999999998887

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0019  Score=46.72  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..+++.|++|+||||+++.+..
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            3589999999999999998875

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0026  Score=48.49  Aligned_cols=27  Identities=22%  Similarity=0.329  Sum_probs=22.4

Q ss_pred             cCCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           10 AEDYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        10 ~~~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ....++-|+|.|++|||||||.+.|..
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            345678999999999999999887754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.91  E-value=0.0018  Score=52.07  Aligned_cols=23  Identities=30%  Similarity=0.626  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-||+++||+|||||-|+++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999998854

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.89  E-value=0.0026  Score=45.32  Aligned_cols=21  Identities=19%  Similarity=0.425  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.0024  Score=47.74  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ..-|++.|++|+|||+|++++.+.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            346999999999999999999863

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.75  E-value=0.0036  Score=44.93  Aligned_cols=25  Identities=32%  Similarity=0.339  Sum_probs=21.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           12 DYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        12 ~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      +...-|.|.|.||||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999998864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.64  E-value=0.0021  Score=50.75  Aligned_cols=23  Identities=35%  Similarity=0.570  Sum_probs=18.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .-++++||+||||||++++.|..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            34679999999999999865543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0038  Score=44.64  Aligned_cols=20  Identities=20%  Similarity=0.280  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0047  Score=43.75  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -+.|.|+||+|||+|+..+...
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999888754

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0068  Score=45.61  Aligned_cols=25  Identities=16%  Similarity=0.153  Sum_probs=20.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHh
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~   35 (223)
                      ...++=|.|-|.+|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3456888999999999999987664

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.35  E-value=0.0058  Score=42.52  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      .=|+|.|++|+||||+.-.|....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            348999999999999998888654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.21  E-value=0.0054  Score=44.15  Aligned_cols=21  Identities=24%  Similarity=0.521  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      +.|.|++|+|||.|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0054  Score=43.99  Aligned_cols=20  Identities=30%  Similarity=0.416  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998887654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.16  E-value=0.0028  Score=48.85  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .|+|+|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.12  E-value=0.0056  Score=47.77  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      --+++.||||+|||+|..++..
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.12  E-value=0.0071  Score=42.09  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 027417           16 KVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      =|+|.|++|+||||+.-.|....
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            47899999999999998888643

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.004  Score=45.20  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999997765

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.00  E-value=0.006  Score=44.17  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|.|+||+|||+|+..+...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4689999999999999888754

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.0014  Score=46.22  Aligned_cols=18  Identities=39%  Similarity=0.617  Sum_probs=16.4

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 027417           18 VLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        18 ~i~G~~~sGKStli~~l~   35 (223)
                      +|+|+.|||||||+.+|.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            588999999999999885

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.0087  Score=42.70  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      +-|+|.|..||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            45789999999999999977643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.01  Score=45.33  Aligned_cols=24  Identities=17%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      +.-.++++|++|+|||.|+..|..
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHh
Confidence            334689999999999999998765

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.88  E-value=0.012  Score=41.88  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 027417           15 FKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~   36 (223)
                      +-|+|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999997754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.84  E-value=0.0092  Score=41.21  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARDE   38 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~~   38 (223)
                      .=|+|.|++|+||||+.-.|....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999998887653

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.81  E-value=0.0077  Score=43.89  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|.|+||+|||+|.-.+...
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4689999999999998877643

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.0088  Score=43.44  Aligned_cols=21  Identities=29%  Similarity=0.562  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -|+|-|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            578999999999999998875

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.69  E-value=0.0085  Score=46.74  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=21.7

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ....-+++++||+|||||-|.++|..
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHh
Confidence            33456799999999999999998864

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.61  E-value=0.0095  Score=43.21  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      --++|.|+||+|||+|+..+...
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            34689999999999999888754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.56  E-value=0.011  Score=45.27  Aligned_cols=24  Identities=21%  Similarity=0.337  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ..++|.|=|+-||||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            567899999999999999998864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.51  E-value=0.014  Score=44.92  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=22.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ..++|.|=|.-||||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4689999999999999999988763

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.50  E-value=0.01  Score=44.33  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           14 LFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ..-|.|.|..|+|||||+..+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            346789999999999999988753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.50  E-value=0.0098  Score=47.01  Aligned_cols=21  Identities=24%  Similarity=0.370  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |+|.|+.||||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999998874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.49  E-value=0.0063  Score=45.92  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=17.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 027417           14 LFKVVLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~   35 (223)
                      .++ +|+|+.||||||+++++.
T Consensus        25 ~ln-vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          25 RVT-AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SEE-EEECCTTTCSTHHHHHHH
T ss_pred             CeE-EEECCCCCcHHHHHHHHH
Confidence            355 699999999999999873

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.41  E-value=0.012  Score=44.97  Aligned_cols=20  Identities=25%  Similarity=0.527  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      +++.|+||+|||.|.++|.+
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            44579999999999999876

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.37  E-value=0.005  Score=46.38  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=15.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      =|+|.|.+||||||+.++|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999987754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.20  E-value=0.011  Score=45.44  Aligned_cols=25  Identities=20%  Similarity=0.392  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      ..++|.|=|.-||||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.014  Score=42.53  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .+++.|++|+|||++++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999987754

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.17  E-value=0.013  Score=42.27  Aligned_cols=22  Identities=14%  Similarity=0.217  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 027417           16 KVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~~   37 (223)
                      -++|.|+||+|||+|+..+...
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999888653

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.015  Score=41.47  Aligned_cols=21  Identities=14%  Similarity=0.354  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999997764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.12  E-value=0.012  Score=46.10  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=18.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~   35 (223)
                      ..++ +|+|+.|||||+++.++.
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHHH
Confidence            4466 488999999999999974

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.01  E-value=0.014  Score=41.75  Aligned_cols=20  Identities=15%  Similarity=0.268  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      |+|-|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.016  Score=42.04  Aligned_cols=23  Identities=17%  Similarity=0.187  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 027417           15 FKVVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        15 ~~i~i~G~~~sGKStli~~l~~~   37 (223)
                      --++|.|+||+|||+|...+...
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999888753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.75  E-value=0.014  Score=41.30  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .--+++.|++++|||.|+.+|..
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            35678999999999999988765

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.67  E-value=0.019  Score=41.10  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -++|.|+||+|||+|+..+..
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467999999999999876543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.54  E-value=0.021  Score=42.24  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      ++|.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999877764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.87  E-value=0.029  Score=41.34  Aligned_cols=20  Identities=30%  Similarity=0.356  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      ++|.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56999999999999876643

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.80  E-value=0.021  Score=42.66  Aligned_cols=17  Identities=12%  Similarity=0.515  Sum_probs=13.9

Q ss_pred             EEEEcCCCCCHHHHH-HH
Q 027417           17 VVLIGDSAVGKSNLL-AR   33 (223)
Q Consensus        17 i~i~G~~~sGKStli-~~   33 (223)
                      ++|+|.||+||||.+ .+
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            689999999999764 44

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.78  E-value=0.032  Score=40.31  Aligned_cols=21  Identities=19%  Similarity=0.167  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998854

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.45  E-value=0.028  Score=42.40  Aligned_cols=15  Identities=20%  Similarity=0.612  Sum_probs=13.2

Q ss_pred             EEEEcCCCCCHHHHH
Q 027417           17 VVLIGDSAVGKSNLL   31 (223)
Q Consensus        17 i~i~G~~~sGKStli   31 (223)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.45  E-value=0.038  Score=40.97  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      .--+++.|++++|||+|++.+..
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHH
Confidence            45678899999999999998875

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.32  E-value=0.05  Score=41.31  Aligned_cols=21  Identities=29%  Similarity=0.577  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      .++++|++|+|||.+.+.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578889999999999987754

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.25  E-value=0.037  Score=43.63  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=19.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...++|+|.+|+|||+++..+..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            35699999999999999877654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.60  E-value=0.057  Score=40.35  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      |++|+|++|+|||+|+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHH
Confidence            789999999999999987765

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.97  E-value=0.068  Score=41.33  Aligned_cols=19  Identities=26%  Similarity=0.497  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 027417           16 KVVLIGDSAVGKSNLLARF   34 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l   34 (223)
                      -++|.|+||+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4679999999999987543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.55  E-value=0.1  Score=33.48  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=22.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           11 EDYLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        11 ~~~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...-+.|.+-|..|+|||||.++|..
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHH
Confidence            34568899999999999999998865

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.11  E-value=0.094  Score=38.65  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      =+.|.|++|+|||+|+-.+..
T Consensus        56 itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHH
Confidence            357999999999999876664

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.01  E-value=0.092  Score=38.26  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 027417           14 LFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        14 ~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ...|+|.|++|+||+.+.+.+..
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            45689999999999999998865

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.85  E-value=0.69  Score=31.49  Aligned_cols=102  Identities=16%  Similarity=0.195  Sum_probs=55.8

Q ss_pred             CCeeeEEEEEcC-CCCCHHHHHHHHhcCCCCCCCCccceeEeEEEEEEECCEEEEEEEEeCCCchhh-------------
Q 027417           11 EDYLFKVVLIGD-SAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF-------------   76 (223)
Q Consensus        11 ~~~~~~i~i~G~-~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------------   76 (223)
                      ....+||+|+|. .++|-+ |+..|..+......                 ..+.++++|.+.....             
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~~-----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~   82 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNH-LLFKLASGEVFGQD-----------------QPIALKLLGSERSFQALEGVAMELEDSLY   82 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHH-HHHHHHHTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTC
T ss_pred             cCCCcEEEEECCCcHHHHH-HHHHHHcCcccCCC-----------------ceEEEEEecCccccchhcchhhhhccccc
Confidence            356789999997 566755 45456655443111                 2234556666542110             


Q ss_pred             --------hchhHhhhcCCCEEEEEEECCCH--hhHHH--------HHHHHHHHhhcCCCCCcEEEEEeCCC
Q 027417           77 --------RAVTSAYYRGAVGALLVYDISRR--QTFDS--------IGRWLNELHTHSDMNVVTILVGNKSD  130 (223)
Q Consensus        77 --------~~~~~~~~~~~d~~i~v~d~~~~--~s~~~--------~~~~~~~i~~~~~~~~p~ivv~nK~D  130 (223)
                              .......+.++|++|++-.....  .+...        ++.+.+.+..+.+....+++|+|-.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          83 PLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             TTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             ccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                    11123345889999888766542  12211        23445556666554566667777655

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.46  E-value=1.4  Score=30.70  Aligned_cols=76  Identities=13%  Similarity=0.085  Sum_probs=48.4

Q ss_pred             EEEEEEeCCCchhhhchhHhhhcCCCEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCcccCHHH
Q 027417           63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKDAREVTTAE  141 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~  141 (223)
                      +.+.++|+++...  ......+..+|.++++...+ ..++.........+.+.   +.|++ +|.|+.+... ..+..+.
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~-~~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD-RDIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT-TCCCHHH
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhccccccc-chhhhHH
Confidence            4678999987533  33444567899999988874 45555555555555432   46665 7899998654 3444444


Q ss_pred             HHHH
Q 027417          142 GKAL  145 (223)
Q Consensus       142 ~~~~  145 (223)
                      .+.+
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4444

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.76  E-value=0.18  Score=37.28  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      |++|+|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            789999999999999887764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.68  E-value=0.21  Score=35.94  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      ++|.|+..+||||+++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            68999999999999998643

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.21  E-value=0.23  Score=35.50  Aligned_cols=20  Identities=35%  Similarity=0.517  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 027417           17 VVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~   36 (223)
                      ++|.|+..+||||+++++.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            68999999999999997643

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.51  E-value=0.23  Score=34.22  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027417           17 VVLIGDSAVGKSNLLARFARD   37 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l~~~   37 (223)
                      |+|+|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999988753

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=84.48  E-value=0.3  Score=35.94  Aligned_cols=21  Identities=19%  Similarity=0.245  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      =+.|.|++++|||+|+..+..
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            357999999999999877765

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.48  E-value=0.32  Score=33.97  Aligned_cols=24  Identities=4%  Similarity=0.061  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 027417           13 YLFKVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        13 ~~~~i~i~G~~~sGKStli~~l~~   36 (223)
                      ....+++.|++|+|||+++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999987765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.26  E-value=0.32  Score=35.75  Aligned_cols=21  Identities=14%  Similarity=0.268  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      -+.|.|++++|||+|+-.+..
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            357999999999999866654

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.21  E-value=0.31  Score=35.79  Aligned_cols=19  Identities=21%  Similarity=0.408  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 027417           16 KVVLIGDSAVGKSNLLARF   34 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l   34 (223)
                      -|++.|..|+||||+.-.+
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            4568999999999976544

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.10  E-value=0.31  Score=35.52  Aligned_cols=18  Identities=33%  Similarity=0.719  Sum_probs=13.7

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 027417           17 VVLIGDSAVGKSNLLARF   34 (223)
Q Consensus        17 i~i~G~~~sGKStli~~l   34 (223)
                      |++.|..||||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            455699999999985444

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.93  E-value=1  Score=29.75  Aligned_cols=50  Identities=22%  Similarity=0.256  Sum_probs=28.6

Q ss_pred             HhhhcCCCEEEEEEECCCHh--h----H----HHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 027417           81 SAYYRGAVGALLVYDISRRQ--T----F----DSIGRWLNELHTHSDMNVVTILVGNKSD  130 (223)
Q Consensus        81 ~~~~~~~d~~i~v~d~~~~~--s----~----~~~~~~~~~i~~~~~~~~p~ivv~nK~D  130 (223)
                      ...++++|++|+........  +    +    .-++.+...+.++...+.-++++.|-+|
T Consensus        75 ~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD  134 (154)
T d1y7ta1          75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN  134 (154)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence            34568999998888765421  1    1    1234455556555543445555666665

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.84  E-value=3.7  Score=26.64  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=17.0

Q ss_pred             EEEEEcC-CCCCHHHHHHHHhcCCC
Q 027417           16 KVVLIGD-SAVGKSNLLARFARDEF   39 (223)
Q Consensus        16 ~i~i~G~-~~sGKStli~~l~~~~~   39 (223)
                      ||.|+|. ..+| +++...+.....
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~   25 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPL   25 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCc
Confidence            7999995 7899 566776765443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.95  E-value=0.39  Score=35.35  Aligned_cols=88  Identities=13%  Similarity=0.034  Sum_probs=46.4

Q ss_pred             EEEEEEeCCCchhhhchhHhh-hcCCCEEEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcE-EEEEeCCCCCCCcccCH
Q 027417           63 VKAQIWDTAGQERFRAVTSAY-YRGAVGALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVT-ILVGNKSDLKDAREVTT  139 (223)
Q Consensus        63 ~~~~l~D~~G~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~-ivv~nK~Dl~~~~~~~~  139 (223)
                      +.+.++|+|+.-......... ...++.++++... +..++..+...+..+... ...+.++ .+|.|+.+...    ..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----ED  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hH
Confidence            456788987643322222222 2356666655443 445555554444444322 2223444 37789876432    23


Q ss_pred             HHHHHHHHHcCCeEEE
Q 027417          140 AEGKALAEAQGLFFME  155 (223)
Q Consensus       140 ~~~~~~~~~~~~~~~~  155 (223)
                      +....+.+.++.+++.
T Consensus       194 ~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         194 ELIIALANKLGTQMIH  209 (289)
T ss_dssp             HHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHcCCeEEE
Confidence            4456677777877654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=82.60  E-value=0.43  Score=33.11  Aligned_cols=19  Identities=21%  Similarity=0.371  Sum_probs=15.8

Q ss_pred             EEEEEcCC-CCCHHHHHHHH
Q 027417           16 KVVLIGDS-AVGKSNLLARF   34 (223)
Q Consensus        16 ~i~i~G~~-~sGKStli~~l   34 (223)
                      |+.|.|.. ||||||+.-.|
T Consensus         3 ~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHH
Confidence            78899995 99999986544

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=82.22  E-value=0.44  Score=30.60  Aligned_cols=20  Identities=20%  Similarity=0.109  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027417           16 KVVLIGDSAVGKSNLLARFA   35 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~   35 (223)
                      ..+|.++.|+|||.++-.+.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            45789999999998875443

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.16  E-value=0.32  Score=36.11  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 027417           16 KVVLIGDSAVGKSNLLARFAR   36 (223)
Q Consensus        16 ~i~i~G~~~sGKStli~~l~~   36 (223)
                      |++|+|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHH
Confidence            679999999999999876653

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.95  E-value=0.89  Score=30.09  Aligned_cols=25  Identities=16%  Similarity=0.244  Sum_probs=17.7

Q ss_pred             eeeEEEEEcC-CCCCHHHHHHHHhcCC
Q 027417           13 YLFKVVLIGD-SAVGKSNLLARFARDE   38 (223)
Q Consensus        13 ~~~~i~i~G~-~~sGKStli~~l~~~~   38 (223)
                      .++||.|+|. ..+|.+... .|..+.
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~~   27 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNGS   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHHH
Confidence            3589999996 678887655 455443

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=80.06  E-value=4.2  Score=27.15  Aligned_cols=54  Identities=17%  Similarity=0.199  Sum_probs=37.4

Q ss_pred             CCHhhHHHHHHH-HHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEc
Q 027417           97 SRRQTFDSIGRW-LNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETS  157 (223)
Q Consensus        97 ~~~~s~~~~~~~-~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (223)
                      +|..+++..... ...+   ...+.|+|++|.......    ..++..++++..++|++.+-
T Consensus         3 sd~~~l~~~v~~~~~~l---~~AkrPvIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAAVDETLKFI---ANRDKVAVLVGSKLRAAG----AEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHHHHHHHHHH---TTCSCEEEEECTTTTTTT----CHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHHHHHHHHHH---HcCCCEEEEECcCccccc----hHHHHHHHHHhhceeEEecc
Confidence            455555554333 3333   334799999998887543    57888999999999988654