Citrus Sinensis ID: 027444

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MLKKRNQLRSILGQIYYQNRNRNQNQNLMSCAIRSDPICKGFHSNVTNNSSDINIINSSSNGFLRFKGKVNNGSLILRGCFDSTNRVNAGADQKVGAFAPPQRVPHLEIAAAEGCTDARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLLLLTSFNDEICIFLLLTSSNDEIRSL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEccccccccEEEEEEEccccEEEEEEEEcHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHccHHHccccccccccccccccccHHHHccccccccccccccccccccccccccccccEEEEccccccccEEEccccccccccccccccEEEEEccccccccccccccccccccEEccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEcccHHHHcEEEEEEccccEEEEEEEEccccccHccc
Coil and Loop (DISEMBL)
MLKKRNQLRSILGQIYYQNrnrnqnqnlmscairsdpickgfhsnvtnnssdiniinsssngflrfkgkvnngslilrgcfdstnrvnagadqkvgafappqrvphlEIAAaegctdarlvngrgssergnplgffdshlhgkIVVAVDVDEVLGNFVSALNRFIADryslnhsvseyHVYEFFKIWNCSRDEGKFLLLLTSFNDEICIFLLLTssndeirsl
Flexible Loop (DISEMBL)
MLKKRNQLRSILGQIYYQNRNRNQNQNLMSCAIRSDPICKGFHSNVTNNSSDINIINSSSNGFLRFKGKVNNGSLILRGCFDSTNRVNAGADQKVGAFAPPQRVPHLEIAAAEGCTDARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLLLLTSFNDEICIFLlltssndeirsl
Low Complexity Region (SEG)
MLKKRNQLRSILGQIYYqnrnrnqnqnLMSCAIRSDPICKGFHsnvtnnssdiniinsssnGFLRFKGKVNNGSLILRGCFDSTNRVNAGADQKVGAFAPPQRVPHLEIAAAEGCTDARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLLLLTSFNDEICIFLLLTSSNDEIRSL
Disordered region (IsUnstruct)
*********SILGQIYYQNRNRNQNQNLMSCAIRSDPICKGFHSNVTNNSSDINIINSSSNGFLRFKGKVNNGSLILRGCFDSTNRVNAGADQKVGAFAPPQRVPHLEIAAAEGCTDARLVN********NPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLLLLTSFNDEICIFLLLT*********
Disordered Region (DISOPRED)
**********ILGQIYY*************CAIRSDPICKGFHSNVTNNSSDINIINSSSNGFLRFKGKVNNGSLILRGCFDSTN**********************************************PLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLLLLTSFNDEICIFLLLTSSNDEI***
Disordered Region (DISEMBL)
MLKKRNQLRSILGQIYYQNRNRNQNQNLMSCAIRSDPICKGFHSNVTNNSSDINIINSSSNGFLRFKGKVNNGSLILRGCFDSTNRVNAGADQKVGAFAPPQRVPHLEIAAAEGCTDARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLLLLTSFNDEICIFLLLTSSNDEIRSL
Disordered Region (DISPRO)
ML***NQLRSILGQIYYQNRNRNQNQNLMSCAIRSDPICKGFHSNVTNNSSDINIINSSSNGFLRFKGKVNNGSLILRGCFDSTNRVNAGADQKVGAFAPPQRVPHLEIAAAEGCTDARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLLLLTSFNDEICIFLLLTS********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKKRNQLRSILGQIYYQNRNRNQNQNLMSCAIRSDPICKGFHSNVTNNSSDINIINSSSNGFLRFKGKVNNGSLILRGCFDSTNRVNAGADQKVGAFAPPQRVPHLEIAAAEGCTDARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLLLLTSFNDEICIFLLLTSSNDEIRSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
255550267	231	conserved hypothetical protein [Ricinus	0.354	0.341	0.784	2e-28
297738494	364	unnamed protein product [Vitis vinifera]	0.547	0.335	0.574	3e-27
225444574	349	PREDICTED: uncharacterized protein LOC10	0.547	0.349	0.574	3e-27
338808451	374	Tac7077 [Sorghum propinquum]	0.569	0.339	0.474	8e-27
125554385	328	hypothetical protein OsI_21993 [Oryza sa	0.654	0.445	0.445	1e-26
224092021	270	predicted protein [Populus trichocarpa]	0.524	0.433	0.582	2e-26
115466880	358	Os06g0192900 [Oryza sativa Japonica Grou	0.681	0.424	0.454	4e-26
125596335	328	hypothetical protein OsJ_20426 [Oryza sa	0.681	0.463	0.454	4e-26
409108328	329	Tac7077, partial [Tripsacum dactyloides]	0.569	0.386	0.478	2e-25
357124958	352	PREDICTED: uncharacterized protein LOC10	0.704	0.446	0.450	3e-25

>gi|255550267|ref|XP_002516184.1| conserved hypothetical protein [Ricinus communis] gi|223544670|gb|EEF46186.1| conserved hypothetical protein [Ricinus communis]

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 67/79 (84%)

Query: 116 TDARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSV 175
           T+AR +NG G+ + G PLGF D  + G IVVAVDVDEVLGNFVSALNRFIADRYS NHSV
Sbjct: 2   TNARYINGHGTCQGGKPLGFPDYPITGNIVVAVDVDEVLGNFVSALNRFIADRYSSNHSV 61

Query: 176 SEYHVYEFFKIWNCSRDEG 194
           SEYHVYEFFKIWNCSRDE 
Sbjct: 62  SEYHVYEFFKIWNCSRDEA 80

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738494|emb|CBI27739.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 87/141 (61%), Gaps = 19/141 (13%)

Query: 58  SSSNGFLRFKGKVNNGSLILRGCFDS-TNRVNAGADQKVGAFA---PPQRVPHLEIAAAE 113
           S+SNGF           L +RGC DS   RV+       GAFA     Q +   EI    
Sbjct: 87  STSNGF--------RIGLSMRGCSDSNKRRVDRNGH---GAFAHSYQQQVLRDFEI---- 131

Query: 114 GCTDARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNH 173
           G  DA +  G G+S  G  LGF    L  KIVVAVDVDEVLGNFVSALNRFIADRYSL H
Sbjct: 132 GLPDAGIPTGHGASHHGKLLGFPLRPLPEKIVVAVDVDEVLGNFVSALNRFIADRYSLKH 191

Query: 174 SVSEYHVYEFFKIWNCSRDEG 194
           SVSEYHVYEFFKIWNCSRDE 
Sbjct: 192 SVSEYHVYEFFKIWNCSRDEA 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444574|ref|XP_002277240.1| PREDICTED: uncharacterized protein LOC100261032 [Vitis vinifera]

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 87/141 (61%), Gaps = 19/141 (13%)

Query: 58  SSSNGFLRFKGKVNNGSLILRGCFDSTNR-VNAGADQKVGAFA---PPQRVPHLEIAAAE 113
           S+SNGF           L +RGC DS  R V+       GAFA     Q +   EI    
Sbjct: 72  STSNGF--------RIGLSMRGCSDSNKRRVDRNGH---GAFAHSYQQQVLRDFEI---- 116

Query: 114 GCTDARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNH 173
           G  DA +  G G+S  G  LGF    L  KIVVAVDVDEVLGNFVSALNRFIADRYSL H
Sbjct: 117 GLPDAGIPTGHGASHHGKLLGFPLRPLPEKIVVAVDVDEVLGNFVSALNRFIADRYSLKH 176

Query: 174 SVSEYHVYEFFKIWNCSRDEG 194
           SVSEYHVYEFFKIWNCSRDE 
Sbjct: 177 SVSEYHVYEFFKIWNCSRDEA 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338808451|gb|AEJ07951.1| Tac7077 [Sorghum propinquum]

 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/139 (47%), Positives = 85/139 (61%), Gaps = 12/139 (8%)

Query: 72  NGSLILRGCFDSTN--------RVNAGADQKVGAFAPPQRV----PHLEIAAAEGCTDAR 119
           +G+L L+GC    +        RV+  A          QR     P + +   E     +
Sbjct: 86  SGALSLKGCLGWQDGGGGEFRRRVDGEAAGMKAQVLTTQRQLMRDPEVLLPLEESAASVK 145

Query: 120 LVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYH 179
            +NG G+  RG PLGF +  +  K+VVAVDVDEVLG+F++ALN+FIADRYS NHSVSEYH
Sbjct: 146 SINGNGACRRGKPLGFPEQPVAAKMVVAVDVDEVLGSFLAALNKFIADRYSWNHSVSEYH 205

Query: 180 VYEFFKIWNCSRDEGKFLL 198
           VYEFFKIWNCSR+   FL+
Sbjct: 206 VYEFFKIWNCSRERANFLV 224

Source: Sorghum propinquum

Species: Sorghum propinquum

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125554385|gb|EAY99990.1| hypothetical protein OsI_21993 [Oryza sativa Indica Group]

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 102/182 (56%), Gaps = 36/182 (19%)

Query: 38  ICKGFHSNVTNNSSDINIINSSSNGFL------RFKGKVNNGSLILRGCFDSTNR----- 86
            C   HSN+    S I        GFL      RF      GS   +GC +  +R     
Sbjct: 12  FCSLSHSNLCGEGSVIQ-----RKGFLDLGMGRRFAPGSALGS---KGCLNWQDRGRSKR 63

Query: 87  -VNAGADQKVGA--FAP-------PQRVPHLEIAAAEGCTDARLVNGRGSSERGNPLGFF 136
            V+ G   ++ A   AP       P+ +P  E+AA       + +NG G+  RG PLGF 
Sbjct: 64  GVDGGEAVRIKAQVLAPQRQLLHDPEVLPLEEVAA-------KSLNGNGACRRGKPLGFP 116

Query: 137 DSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKF 196
           +     K+VVAVDVDEVLG+F++ALN+FIADRYSLNHSVSEYHVYEFFKIWNCSR+   F
Sbjct: 117 EHAAPTKMVVAVDVDEVLGSFLAALNKFIADRYSLNHSVSEYHVYEFFKIWNCSRERANF 176

Query: 197 LL 198
           L+
Sbjct: 177 LV 178

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092021|ref|XP_002309442.1| predicted protein [Populus trichocarpa] gi|222855418|gb|EEE92965.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 83/127 (65%), Gaps = 10/127 (7%)

Query: 73  GSLILRGCFDSTNRVNAGADQKVGAFAPP-QRVPHLE--IAAAEGCTDARLVNGRGSSER 129
           G+L+L+GC   ++R     DQK  AFAP  Q V   E  +       + R VN  G    
Sbjct: 3   GALMLKGCCSDSSR-----DQKARAFAPNNQLVRDFEARLEDRSASINGRFVNDHGLC-- 55

Query: 130 GNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNC 189
           G    F D  L  KIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFF+IWNC
Sbjct: 56  GKLPRFPDFPLTEKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFRIWNC 115

Query: 190 SRDEGKF 196
           +RDE  F
Sbjct: 116 TRDEADF 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115466880|ref|NP_001057039.1| Os06g0192900 [Oryza sativa Japonica Group] gi|51090792|dbj|BAD35270.1| unknown protein [Oryza sativa Japonica Group] gi|113595079|dbj|BAF18953.1| Os06g0192900 [Oryza sativa Japonica Group]

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/176 (45%), Positives = 101/176 (57%), Gaps = 24/176 (13%)

Query: 38  ICKGFHSNVTNNSSDINIINSSSNGFL------RFKGKVNNGSLILRGCFDSTNR----- 86
            C   HSN+    S I        GFL      RF      GS   +GC +  +R     
Sbjct: 42  FCSLSHSNLCGEGSVIQ-----RKGFLDLGMGRRFAPGSALGS---KGCLNWQDRGRSKR 93

Query: 87  -VNAGADQKVGA--FAPPQRVPH-LEIAAAEGCTDARLVNGRGSSERGNPLGFFDSHLHG 142
            V+ G   ++ A   AP +++ H  E+   E      L NG G+  RG PLGF ++    
Sbjct: 94  GVDGGEAVRIKAQVLAPQRQLLHDPEVLPLEEVATKSL-NGNGACRRGKPLGFPENAAPT 152

Query: 143 KIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLL 198
           K+VVAVDVDEVLG+F++ALN+FIADRYSLNHSVSEYHVYEFFKIWNCSR+   FL+
Sbjct: 153 KMVVAVDVDEVLGSFLAALNKFIADRYSLNHSVSEYHVYEFFKIWNCSRERANFLV 208

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125596335|gb|EAZ36115.1| hypothetical protein OsJ_20426 [Oryza sativa Japonica Group]

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/176 (45%), Positives = 101/176 (57%), Gaps = 24/176 (13%)

Query: 38  ICKGFHSNVTNNSSDINIINSSSNGFL------RFKGKVNNGSLILRGCFDSTNR----- 86
            C   HSN+    S I        GFL      RF      GS   +GC +  +R     
Sbjct: 12  FCSLSHSNLCGEGSVIQ-----RKGFLDLGMGRRFAPGSALGS---KGCLNWQDRGRSKR 63

Query: 87  -VNAGADQKVGA--FAPPQRVPH-LEIAAAEGCTDARLVNGRGSSERGNPLGFFDSHLHG 142
            V+ G   ++ A   AP +++ H  E+   E      L NG G+  RG PLGF ++    
Sbjct: 64  GVDGGEAVRIKAQVLAPQRQLLHDPEVLPLEEVATKSL-NGNGACRRGKPLGFPENAAPT 122

Query: 143 KIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLL 198
           K+VVAVDVDEVLG+F++ALN+FIADRYSLNHSVSEYHVYEFFKIWNCSR+   FL+
Sbjct: 123 KMVVAVDVDEVLGSFLAALNKFIADRYSLNHSVSEYHVYEFFKIWNCSRERANFLV 178

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|409108328|gb|AFV13459.1| Tac7077, partial [Tripsacum dactyloides]

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 85/138 (61%), Gaps = 11/138 (7%)

Query: 72  NGSLILRGCF---------DSTNRVNAGADQKVGAFAPPQR--VPHLEIAAAEGCTDARL 120
           +G+L LRGC          +   RV+  A          QR  +   E+   E    ++ 
Sbjct: 42  SGALSLRGCLGWRDGGGGGEFRRRVDGEAAGMKAQVLTTQRQLMRDPEVLPLEEAAASKS 101

Query: 121 VNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHV 180
           +N  G+  RG PLGF +  +  K+VVAVDVDEVLG+F++ALN+FIADRYS NHSVSEYHV
Sbjct: 102 MNVNGACRRGKPLGFPEQAVATKMVVAVDVDEVLGSFLAALNKFIADRYSWNHSVSEYHV 161

Query: 181 YEFFKIWNCSRDEGKFLL 198
           YEFFKIWNCSR+   FL+
Sbjct: 162 YEFFKIWNCSRERANFLV 179

Source: Tripsacum dactyloides

Species: Tripsacum dactyloides

Genus: Tripsacum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357124958|ref|XP_003564163.1| PREDICTED: uncharacterized protein LOC100842936 [Brachypodium distachyon]

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 100/171 (58%), Gaps = 14/171 (8%)

Query: 38  ICKGFHSNVTNNSSDINIINSSSNGFLRFKGKVNNGSLI-LRGCFDSTN-----RVNAGA 91
            C   HSN  N SS +    +   G  R   +   GS + L+GC D  +     RV    
Sbjct: 36  FCSFSHSNAHNESSRMQRKGALDLGIGR---RFAPGSAMSLKGCLDWQDSSRFRRVGGDG 92

Query: 92  DQ---KVGAFAPP-QRVPHLEIAAAEGCTDARLVNGRGSSERGNPLGFFDSHLHGKIVVA 147
           +    K    AP  Q +   E+  +E  + A+ +NG G+  RG  LGF +  L  K+VVA
Sbjct: 93  EAVEIKARVLAPQRQFIRDSEVLLSEEVS-AKSLNGNGTFRRGKGLGFPEQALSTKMVVA 151

Query: 148 VDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLL 198
           VDVDEVLG+F++ALNRFIA+RYS NHSVSEYHVYEFFKIWNCSR++   L+
Sbjct: 152 VDVDEVLGSFLAALNRFIAERYSWNHSVSEYHVYEFFKIWNCSREKANILV 202

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2125954	353	AT4G33140 [Arabidopsis thalian	0.520	0.328	0.547	1.8e-25

TAIR|locus:2125954 AT4G33140 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 75/137 (54%), Positives = 82/137 (59%)

Query:    66 FKGKVNNGS---LILRGCFDSTNRVNAGADQKVGAFAPPQRVPH------LEIAAAEGCT 116
             FK K   G      LR CFDS  +     DQK  A    +R  H       E  AA G T
Sbjct:    74 FKVKGGGGKPKGFTLRSCFDSHKK----PDQKARALTQHRRFLHDLGSGPSEERAAAGTT 129

Query:   117 DARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVS 176
             D  L +GRG+  R    G      + KIVVAVD+DEVLGNFVSALNRFIADRY  NHSVS
Sbjct:   130 D--LADGRGAYLRTRFQG------NDKIVVAVDIDEVLGNFVSALNRFIADRYLSNHSVS 181

Query:   177 EYHVYEFFKIWNCSRDE 193
             EYHVYEFFKIWNCSR+E
Sbjct:   182 EYHVYEFFKIWNCSRNE 198


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.141   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      223       195   0.00078  111 3  11 22  0.41    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.55u 0.14s 15.69t   Elapsed:  00:00:01
  Total cpu time:  15.55u 0.14s 15.69t   Elapsed:  00:00:01
  Start:  Fri May 10 16:09:43 2013   End:  Fri May 10 16:09:44 2013

GO:0016791 "phosphatase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016353001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (319 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
PF06941	191	NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosol	99.12
COG4502	180	5'(3')-deoxyribonucleotidase [Nucleotide transport	96.65
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	85.65

>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins

Probab=99.12  E-value=3.2e-12  Score=103.58  Aligned_cols=77  Identities=23%  Similarity=0.337  Sum_probs=61.9

Q ss_pred             CeEEEEechhhhhhhHHHHHHHHHhhhcCC--cccccceeEEEEeecCCChhcccceEE-Ee----eecc-----C----
Q 027444          143 KIVVAVDVDEVLGNFVSALNRFIADRYSLN--HSVSEYHVYEFFKIWNCSRDEGKFLLL-LT----SFND-----E----  206 (223)
Q Consensus       143 k~vVAVDlDEVLg~Fl~aLnKfhnd~Ygt~--~sVSDfhvY~F~KIWncSeEES~~~Vh-Fy----~F~~-----G----  206 (223)
                      +.+||||+|+||.+|..++.+|+|+.|+++  ++..|...|.+++.||++.+|..+.++ |+    .|.+     |    
T Consensus         2 ~i~I~iDiDgVLad~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~f~~l~p~~gA~e~   81 (191)
T PF06941_consen    2 KIRIAIDIDGVLADFNSAFIEWFNEEFGKNPELTPEDITGYWDWEKWGITEPEFYEKLWRFYEEPGFFSNLPPIPGAVEA   81 (191)
T ss_dssp             -EEEEEESBTTTB-HHHHHHHHHHHHTTTS----GGGGTSSSHHHHHHHHSTTHHHHHHHHHTSTTTTTT--B-TTHHHH
T ss_pred             CcEEEEECCCCCcccHHHHHHHHHHHcCCCCCCCHHHhhhhhHHHHhCCCCHHHHHHHHHHHhChhhhcCCCccHHHHHH
Confidence            345999999999999999999999999999  888898888999999999988888887 55    3443     2    


Q ss_pred             -------ccEEEEEccchhh
Q 027444          207 -------ICIFLLLTSSNDE  219 (223)
Q Consensus       207 -------~~~LvIVTSRQd~  219 (223)
                             ++.++|||+|+..
T Consensus        82 l~~L~~~g~~~~~Itar~~~  101 (191)
T PF06941_consen   82 LKKLRDKGHEIVIITARPPE  101 (191)
T ss_dssp             HHHHHTSTTEEEEEEE-SSS
T ss_pred             HHHHHHcCCcEEEEEecCcc
Confidence                   5689999999754

5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....

>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]

Probab=96.65  E-value=0.0026  Score=54.99  Aligned_cols=72  Identities=21%  Similarity=0.241  Sum_probs=54.4

Q ss_pred             CCeEEEEechhhhhhhHHHHHHHHHhhhcC-CcccccceeEEEEeecCCChhcccceEE-Ee---eecc-C---------
Q 027444          142 GKIVVAVDVDEVLGNFVSALNRFIADRYSL-NHSVSEYHVYEFFKIWNCSRDEGKFLLL-LT---SFND-E---------  206 (223)
Q Consensus       142 ~k~vVAVDlDEVLg~Fl~aLnKfhnd~Ygt-~~sVSDfhvY~F~KIWncSeEES~~~Vh-Fy---~F~~-G---------  206 (223)
                      .|++||||+|+||..++.-..+.+| .|.- -++.+|   --.|+|=+...++...+-+ -+   -|.+ |         
T Consensus         2 ~kk~iaIDmD~vLadll~ewv~~~N-~y~D~~lk~~d---i~gwdik~yv~~~~g~i~~il~ep~fFRnL~V~p~aq~v~   77 (180)
T COG4502           2 NKKTIAIDMDTVLADLLREWVKRYN-IYKDKLLKMSD---IKGWDIKNYVKPECGKIYDILKEPHFFRNLGVQPFAQTVL   77 (180)
T ss_pred             CCceEEeeHHHHHHHHHHHHHHHhh-hccccCcChHh---hcccchhhccCccCCeeeeeccCcchhhhcCccccHHHHH
Confidence            5899999999999999988888887 4532 233455   4578999999998887766 33   3444 2         


Q ss_pred             -----ccEEEEEccch
Q 027444          207 -----ICIFLLLTSSN  217 (223)
Q Consensus       207 -----~~~LvIVTSRQ  217 (223)
                           .+.+||||+--
T Consensus        78 keLt~~y~vYivtaam   93 (180)
T COG4502          78 KELTSIYNVYIVTAAM   93 (180)
T ss_pred             HHHHhhheEEEEEecc
Confidence                 79999999763

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=85.65  E-value=0.082  Score=46.37  Aligned_cols=68  Identities=16%  Similarity=0.085  Sum_probs=41.6

Q ss_pred             CeEEEEechhhhhhhHHHHHHHHHhhhcCCc-cccc---ceeEEEEeecCCChhc-ccce--EE-Ee-eeccCccEEEEE
Q 027444          143 KIVVAVDVDEVLGNFVSALNRFIADRYSLNH-SVSE---YHVYEFFKIWNCSRDE-GKFL--LL-LT-SFNDEICIFLLL  213 (223)
Q Consensus       143 k~vVAVDlDEVLg~Fl~aLnKfhnd~Ygt~~-sVSD---fhvY~F~KIWncSeEE-S~~~--Vh-Fy-~F~~G~~~LvIV  213 (223)
                      .+.|-+|+|++|..-....      .+|.+. +-.+   ++.-.||+.|..-.++ +...  +. |. +-+.-+.+++||
T Consensus        63 p~aViFDlDgTLlDSs~~~------~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iV  136 (237)
T TIGR01672        63 PIAVSFDIDDTVLFSSPGF------WRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFV  136 (237)
T ss_pred             CeEEEEeCCCccccCcHHH------hCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEE
Confidence            3589999999998877766      166662 2322   2233889888655421 1111  11 22 222338999999


Q ss_pred             ccc
Q 027444          214 TSS  216 (223)
Q Consensus       214 TSR  216 (223)
                      |+|
T Consensus       137 Tnr  139 (237)
T TIGR01672       137 TGR  139 (237)
T ss_pred             eCC
Confidence            998

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	9e-07
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	2e-06
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	3e-06

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis} Length = 180

 Score = 46.5 bits (110), Expect = 9e-07
 Identities = 12/65 (18%), Positives = 28/65 (43%)

Query: 143 KIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLLLLTS 202
           +  +A+D+DEVL + + A+ + + +R  LN  +   +  +   +          +L    
Sbjct: 4   RQRIAIDMDEVLADTLGAVVKAVNERADLNIKMESLNGKKLKHMIPEHEGLVMDILKEPG 63

Query: 203 FNDEI 207
           F   +
Sbjct: 64  FFRNL 68

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A* Length = 193

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 143 KIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFF--KIWNCSRDEGKFLL 198
            + V VD+D VL +F + L R    R+     V       F   + +   R +    +
Sbjct: 2   SVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADKV 59

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A Length = 197

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 14/71 (19%), Positives = 22/71 (30%)

Query: 143 KIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLLLLTS 202
            + V VD+D VL +F     R    R+     ++      F+      R          S
Sbjct: 4   ALRVLVDMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAIS 63

Query: 203 FNDEICIFLLL 213
             +    F  L
Sbjct: 64  IWESKNFFFEL 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	94.64

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=94.64  E-value=0.01  Score=44.73  Aligned_cols=48  Identities=21%  Similarity=0.304  Sum_probs=33.9

Q ss_pred             CeEEEEechhhhhhhHHHHHHHHHhhhcCCcccccceeEEEEeecCCC
Q 027444          143 KIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCS  190 (223)
Q Consensus       143 k~vVAVDlDEVLg~Fl~aLnKfhnd~Ygt~~sVSDfhvY~F~KIWncS  190 (223)
                      ++.|..|+|-||.++.....+..++.||.+++..++..+.++++++.+
T Consensus         4 ~~~viFD~DGtL~Ds~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~   51 (180)
T 3bwv_A            4 RQRIAIDMDEVLADTLGAVVKAVNERADLNIKMESLNGKKLKHMIPEH   51 (180)
T ss_dssp             CCEEEEETBTTTBCHHHHHHHHHHHHSCCCCCGGGCTTCCC-------
T ss_pred             ccEEEEeCCCcccccHHHHHHHHHHHhCCCCCHHHHcCccHHHHCCch
Confidence            357899999999999999989888899988776665555556666543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d1q92a_	195	c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2	1e-05

>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5'(3')-deoxyribonucleotidase (dNT-2)
domain: 5'(3')-deoxyribonucleotidase (dNT-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 14/71 (19%), Positives = 22/71 (30%)

Query: 143 KIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLLLLTS 202
            + V VD+D VL +F     R    R+     ++      F+      R          S
Sbjct: 3   ALRVLVDMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAIS 62

Query: 203 FNDEICIFLLL 213
             +    F  L
Sbjct: 63  IWESKNFFFEL 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1q92a_	195	5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo	98.29
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	82.73

>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5'(3')-deoxyribonucleotidase (dNT-2)
domain: 5'(3')-deoxyribonucleotidase (dNT-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.3e-08  Score=76.67  Aligned_cols=77  Identities=17%  Similarity=0.135  Sum_probs=59.0

Q ss_pred             CCeEEEEechhhhhhhHHHHHHHHHhhhcCCcccc--cceeEEEEeecCCChhcccceEE-Ee----eecc-----C---
Q 027444          142 GKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVS--EYHVYEFFKIWNCSRDEGKFLLL-LT----SFND-----E---  206 (223)
Q Consensus       142 ~k~vVAVDlDEVLg~Fl~aLnKfhnd~Ygt~~sVS--DfhvY~F~KIWncSeEES~~~Vh-Fy----~F~~-----G---  206 (223)
                      .+|+|+||+|.||.+|..++.+|.++.|+.+..+.  +.+.|.+.+.|+.+.+|..+... ++    .|.+     |   
T Consensus         2 ~~mrI~iDmDGVL~Df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ff~~L~p~~gA~e   81 (195)
T d1q92a_           2 RALRVLVDMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGAVE   81 (195)
T ss_dssp             CCEEEEECSBTTTBCHHHHHHHHHHHHCTTSCCCCGGGCCSSCHHHHHHHHSTTHHHHHHHHHTSTTTTTTCCBCTTHHH
T ss_pred             CccEEEEECCCccccCHHHHHHHHHHHcCCccccChhhhccchhHHHhCCCcHHHHHHHHHHhhhhhHHhhCCcccCHHH
Confidence            47899999999999999999999999999886654  44556666788888877666555 22    2332     2   


Q ss_pred             ---------ccEEEEEccchh
Q 027444          207 ---------ICIFLLLTSSND  218 (223)
Q Consensus       207 ---------~~~LvIVTSRQd  218 (223)
                               ...++|||+|..
T Consensus        82 ~l~~L~~~~~~~v~i~t~~~~  102 (195)
T d1q92a_          82 AVKEMASLQNTDVFICTSPIK  102 (195)
T ss_dssp             HHHHHHHSTTEEEEEEECCCS
T ss_pred             HHHHHhhccCccceEEccccc
Confidence                     578999999864

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=82.73  E-value=0.046  Score=38.13  Aligned_cols=16  Identities=0%  Similarity=0.042  Sum_probs=13.0

Q ss_pred             CccEEEEEccchhhhh
Q 027444          206 EICIFLLLTSSNDEIR  221 (223)
Q Consensus       206 G~~~LvIVTSRQd~IR  221 (223)
                      .+++++|||+|.+..+
T Consensus        51 ~G~~Iii~T~R~~~~~   66 (149)
T d1ltqa1          51 MGYQIVVVSGRESGTK   66 (149)
T ss_dssp             TTCEEEEEECSCCCCS
T ss_pred             ccCeEEEEecCcHHHH
Confidence            3899999999976544