Citrus Sinensis ID: 027450

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFHF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEccccEEEcccHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccEEEEEccccEEEEcccHHHHHHHHHHHccccEccc
Coil and Loop (DISEMBL)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKlqvhppeiivdhhiylppgpghhnahgpscsggvvvasrdgkivCENTLDARLDVVFrkklpevfhf
Flexible Loop (DISEMBL)
mndadvskqIQQMVRFIRQEAEEKANeisvsaeeefnieklqlveAEKKKIRqeyerkekqveiRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFHF
Low Complexity Region (SEG)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLppgpghhnahgpSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFHF
Disordered region (IsUnstruct)
********************************************************************EYSMQLNASRIKVLQA***************VLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE****
Disordered Region (DISOPRED)
****D*SKQIQQMVRFIRQEAEEKANEISVSAE************************************************LQAQDDLVSNMMEAAS**********NSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFHF
Disordered Region (DISEMBL)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFHF
Disordered Region (DISPRO)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH****GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVF*F
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNxxxxxxxxxxxxxxxxxxxxxxxxVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFHF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q9MB46	230	V-type proton ATPase subu	N/A	no	0.986	0.956	0.995	1e-124
Q9SWE7	230	V-type proton ATPase subu	N/A	no	0.986	0.956	0.990	1e-123
O23948	237	V-type proton ATPase subu	N/A	no	0.982	0.924	0.815	5e-98
Q41396	229	V-type proton ATPase subu	N/A	no	0.982	0.956	0.795	5e-95
Q39258	230	V-type proton ATPase subu	yes	no	0.977	0.947	0.766	1e-92
Q40272	226	V-type proton ATPase subu	N/A	no	0.982	0.969	0.768	2e-89
P0CAN7	237	V-type proton ATPase subu	no	no	0.986	0.928	0.730	6e-89
Q9C9Z8	235	V-type proton ATPase subu	no	no	0.986	0.936	0.684	5e-83
P31402	226	V-type proton ATPase subu	N/A	no	0.937	0.924	0.440	5e-41
P50518	226	V-type proton ATPase subu	yes	no	0.928	0.915	0.427	5e-41

>sp|Q9MB46|VATE_CITUN V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1

 Score =  444 bits (1142), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/220 (99%), Positives = 220/220 (100%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
           AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE+
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI 220

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Citrus unshiu (taxid: 55188)

>sp|Q9SWE7|VATE_CITLI V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1

 Score =  441 bits (1134), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/220 (99%), Positives = 219/220 (99%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
           AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE+
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI 220

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Citrus limon (taxid: 2708)

>sp|O23948|VATE_GOSHI V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1

 Score =  357 bits (915), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 186/228 (81%), Positives = 202/228 (88%), Gaps = 9/228 (3%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           M+DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHH- 179
           SL+RLKEP VLLRCRK+D HLVESVL+SAKEEYA K+ VHPPEIIVD  ++LPPGP HH 
Sbjct: 121 SLVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVD-DVHLPPGPSHHH 179

Query: 180 -------NAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
                   AHGP CSGGVV+ASRDGKIV ENTLDARLDV F KKLPE+
Sbjct: 180 GFFHHHAEAHGPFCSGGVVIASRDGKIVFENTLDARLDVAFNKKLPEI 227

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Gossypium hirsutum (taxid: 3635)

>sp|Q41396|VATE_SPIOL V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1

 Score =  347 bits (889), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 175/220 (79%), Positives = 195/220 (88%), Gaps = 1/220 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DV KQIQQMVRFIRQEAEEKANEISV+AEEEFNIEKLQLVEAEKKKIR EYERKEK
Sbjct: 1   MNDTDVQKQIQQMVRFIRQEAEEKANEISVAAEEEFNIEKLQLVEAEKKKIRPEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++R+KIEYSMQLNASRIKVLQAQDDLV++M E A+KE+L VS DH+ YK+LLK L+VQ
Sbjct: 61  QVQVRRKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRL+EP VLLRCR+DD HLVE VL SAKEEYA+K +VH PEIIVD  I+LP GP HH 
Sbjct: 121 SLLRLREPGVLLRCREDDVHLVEHVLNSAKEEYAEKAEVHTPEIIVD-SIHLPAGPSHHK 179

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
            HG  CSGGVV+ASRDGKIV ENTLDARL+V FRKKLP++
Sbjct: 180 EHGLHCSGGVVLASRDGKIVFENTLDARLEVAFRKKLPQI 219

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Spinacia oleracea (taxid: 3562)

>sp|Q39258|VATE1_ARATH V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2

 Score =  339 bits (869), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 167/218 (76%), Positives = 192/218 (88%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEK
Sbjct: 1   MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           Q ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ
Sbjct: 61  QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
            LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+LPP P  ++
Sbjct: 121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSND 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP 218
            HG  CSGGVV+ASRDGKIVCENTLDARLDV FR KLP
Sbjct: 181 PHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLP 218

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. Required for Golgi organization and vacuole function in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40272|VATE_MESCR V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1

 Score =  328 bits (840), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 169/220 (76%), Positives = 190/220 (86%), Gaps = 1/220 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DV  QIQQMVRF+RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK K
Sbjct: 1   MNDTDVQNQIQQMVRFMRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++R+KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE+L VS DH+ Y+ LLK LIVQ
Sbjct: 61  QVDVRRKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCR++D H V  VL SA+EEY +K  V  PE+IVD  I+LPP P  ++
Sbjct: 121 SLLRLKEPAVLLRCREEDKHHVHRVLHSAREEYGEKACVSHPEVIVD-DIHLPPAPTSYD 179

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
           +H  SCSGGVV+ASRDGKIV ENTLDARL+V FRKKLP++
Sbjct: 180 SHELSCSGGVVMASRDGKIVFENTLDARLEVAFRKKLPQI 219

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|P0CAN7|VATE3_ARATH V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1

 Score =  326 bits (836), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 165/226 (73%), Positives = 191/226 (84%), Gaps = 6/226 (2%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSR------DHNSYKKLL 114
           QV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LL
Sbjct: 61  QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120

Query: 115 KGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPP 174
           K LIVQ LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+LPP
Sbjct: 121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPP 180

Query: 175 GPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
            P   + H  SC+GGVV+ASRDGKIVCENTLDARL+V FR KLPE+
Sbjct: 181 APSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEI 226

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9Z8|VATE2_ARATH V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1

 Score =  307 bits (786), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 152/222 (68%), Positives = 191/222 (86%), Gaps = 2/222 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++
Sbjct: 61  QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY--LPPGPGH 178
           SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++   PP P  
Sbjct: 121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKL 180

Query: 179 HNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
            ++H P CSGGVV+AS+DGKIVCENTLDARLDV FR+KLP++
Sbjct: 181 PDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQI 222

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|P31402|VATE_MANSE V-type proton ATPase subunit E OS=Manduca sexta GN=VHA26 PE=2 SV=1

 Score =  167 bits (423), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/220 (44%), Positives = 147/220 (66%), Gaps = 11/220 (5%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEK 62

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE++KKI+ S  LN +R+KVL+ ++D V N+++ A K +  V +D   Y  LL  LIVQ
Sbjct: 63  QVELQKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDIKLYSDLLVTLIVQ 122

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           +L +L EP V LR R+ D  LVES+L  A+++Y  K++     + +D+  +LPP      
Sbjct: 123 ALFQLVEPTVTLRVRQADKALVESLLGRAQQDYKAKIK-KDVVLKIDNENFLPPD----- 176

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
               +C G  ++A++ G+I   NTL++RL+++ ++ LPE+
Sbjct: 177 ----TCGGIELIAAK-GRIKISNTLESRLELIAQQLLPEI 211

The vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. This subunit is essential for its assembly or catalytic function. V-ATPase is responsible for energizing electrophoretic K(+)/2H(+) antiport by generating a transmembrane voltage of more than 200mV.

Manduca sexta (taxid: 7130)

>sp|P50518|VATE1_MOUSE V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2

 Score =  167 bits (423), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/222 (42%), Positives = 145/222 (65%), Gaps = 15/222 (6%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct: 63  QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLPPGPGH 178
            L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YLP     
Sbjct: 123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQEAYLP----- 174

Query: 179 HNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
                   +GGV + + D KI   NTL++RLD++ ++ +PEV
Sbjct: 175 -----EEIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEV 211

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
12585474	230	RecName: Full=V-type proton ATPase subun	0.986	0.956	0.995	1e-122
12585492	230	RecName: Full=V-type proton ATPase subun	0.986	0.956	0.990	1e-121
255537687	230	vacuolar ATP synthase subunit E, putativ	0.986	0.956	0.868	1e-107
225426050	230	PREDICTED: V-type proton ATPase subunit	0.986	0.956	0.872	1e-106
118488420	229	unknown [Populus trichocarpa]	0.986	0.960	0.85	1e-103
224118820	229	predicted protein [Populus trichocarpa]	0.986	0.960	0.85	1e-103
224123646	229	predicted protein [Populus trichocarpa]	0.986	0.960	0.845	1e-102
449460539	229	PREDICTED: V-type proton ATPase subunit	0.982	0.956	0.845	1e-99
356513307	232	PREDICTED: V-type proton ATPase subunit	0.986	0.948	0.824	7e-99
356528948	232	PREDICTED: V-type proton ATPase subunit	0.986	0.948	0.828	7e-99

>gi|12585474|sp|Q9MB46.1|VATE_CITUN RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=Vacuolar proton pump subunit E gi|6729085|dbj|BAA89661.1| vacuolar H+-ATPase E subunit-1 [Citrus unshiu]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/220 (99%), Positives = 220/220 (100%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
           AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE+
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI 220

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12585492|sp|Q9SWE7.1|VATE_CITLI RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=ClVE-1; AltName: Full=Vacuolar proton pump subunit E gi|5733660|gb|AAD49706.1| vacuolar V-H+ATPase subunit E [Citrus limon]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/220 (99%), Positives = 219/220 (99%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
           AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE+
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI 220

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537687|ref|XP_002509910.1| vacuolar ATP synthase subunit E, putative [Ricinus communis] gi|223549809|gb|EEF51297.1| vacuolar ATP synthase subunit E, putative [Ricinus communis]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/220 (86%), Positives = 209/220 (95%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK+RQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKVRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE+RKKIEYSMQLNASRIKVLQAQDD+V+ M EAA+K++LNVSRDH+ Y+KLLK LIVQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDVVNAMKEAATKDLLNVSRDHHVYRKLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDD HL+ESVL+SAKEEYA+K+ VH PEIIVD+H++LPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDLHLLESVLDSAKEEYAEKVNVHAPEIIVDNHVFLPPAPSHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
            HGP CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPE+
Sbjct: 181 VHGPYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEI 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426050|ref|XP_002274995.1| PREDICTED: V-type proton ATPase subunit E [Vitis vinifera] gi|297742293|emb|CBI34442.3| unnamed protein product [Vitis vinifera]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/220 (87%), Positives = 208/220 (94%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV+IRKKIEYSMQLNASRIKVLQAQDDLVS+M EAASKE+L+VS DH+ YK+LL+ L+VQ
Sbjct: 61  QVDIRKKIEYSMQLNASRIKVLQAQDDLVSSMKEAASKELLHVSHDHHVYKRLLRDLVVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDD HLVES+L+SAK+EYA K  V+PPEIIVDH +YLPP P HH+
Sbjct: 121 SLLRLKEPAVLLRCRKDDLHLVESILDSAKDEYAGKANVYPPEIIVDHQVYLPPAPSHHH 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
           AHGP CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPE+
Sbjct: 181 AHGPFCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEI 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488420|gb|ABK96025.1| unknown [Populus trichocarpa]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/220 (85%), Positives = 204/220 (92%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A K++LNVS+ H+ YK LLK LIVQ
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDVVNSMKDVAGKDLLNVSQHHHRYKHLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVL SAKEEYA+K  V+PPE+IVDH +YLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLNSAKEEYAEKANVYPPEVIVDHDVYLPPAPSHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
           AHGP CSGGVV+ASRDGKIV EN+LDARLDVVFRKKLPE+
Sbjct: 181 AHGPFCSGGVVLASRDGKIVFENSLDARLDVVFRKKLPEI 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118820|ref|XP_002331357.1| predicted protein [Populus trichocarpa] gi|222874395|gb|EEF11526.1| predicted protein [Populus trichocarpa]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/220 (85%), Positives = 204/220 (92%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A K++LNVS+ H+ YK LLK LIVQ
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDVVNSMKDVAGKDLLNVSQHHHRYKHLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVL SAKEEYA+K  V+PPE+IVDH +YLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLHSAKEEYAEKANVYPPEVIVDHDVYLPPAPSHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
           AHGP CSGGVV+ASRDGKIV EN+LDARLDVVFRKKLPE+
Sbjct: 181 AHGPFCSGGVVLASRDGKIVFENSLDARLDVVFRKKLPEI 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123646|ref|XP_002319131.1| predicted protein [Populus trichocarpa] gi|118481235|gb|ABK92567.1| unknown [Populus trichocarpa] gi|118486319|gb|ABK95001.1| unknown [Populus trichocarpa] gi|222857507|gb|EEE95054.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/220 (84%), Positives = 203/220 (92%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A KE+LNVS++ + YK LLK LIVQ
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDMVNSMKDGAGKELLNVSQNQHHYKNLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDH+LVESVL SAK+EYA+K  V PPEIIVDH+IYLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHNLVESVLHSAKDEYAEKANVFPPEIIVDHNIYLPPAPSHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
           AHG SCSGGVV+ASRDGKIV EN+LDARLDV FRKKLPE+
Sbjct: 181 AHGLSCSGGVVLASRDGKIVFENSLDARLDVAFRKKLPEI 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460539|ref|XP_004148003.1| PREDICTED: V-type proton ATPase subunit E-like [Cucumis sativus]

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 186/220 (84%), Positives = 204/220 (92%), Gaps = 1/220 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDD+V++M EAASKE+L++ ++ + YK LLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVVNDMKEAASKELLSIGQNEHVYKNLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRK D +LVESVL SA  EYA+K +VH PEIIVD H++LPPGP HH+
Sbjct: 121 SLLRLKEPAVLLRCRKSDVYLVESVLGSAAVEYAEKEKVHEPEIIVD-HVHLPPGPSHHH 179

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
            HGPSCSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPE+
Sbjct: 180 QHGPSCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEI 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513307|ref|XP_003525355.1| PREDICTED: V-type proton ATPase subunit E-like [Glycine max]

 Score =  365 bits (937), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 183/222 (82%), Positives = 201/222 (90%), Gaps = 2/222 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA+KKKIRQEYERKE+
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEADKKKIRQEYERKER 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNS--YKKLLKGLI 118
           QVEIRKKIEYSMQLNASRIKVLQAQDD++S+M EAASKE+L VS  H+   Y+ LLK LI
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLTVSHHHDDHVYRNLLKDLI 120

Query: 119 VQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH 178
           VQ LLRLKEP+VLLRCRKDD HLVE+VL+SA +EYA+K  V PPEIIVD+ +YLPPGP  
Sbjct: 121 VQCLLRLKEPSVLLRCRKDDLHLVENVLDSAAQEYAEKANVDPPEIIVDNQVYLPPGPSR 180

Query: 179 HNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
           HN+H   CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPE+
Sbjct: 181 HNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEI 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528948|ref|XP_003533059.1| PREDICTED: V-type proton ATPase subunit E-like [Glycine max]

 Score =  365 bits (937), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 184/222 (82%), Positives = 201/222 (90%), Gaps = 2/222 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKE+
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKER 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNS--YKKLLKGLI 118
           QVEIRKKIEYSMQLNASRIKVLQAQDD++S+M EAASKE+LNVS  H+   Y+ LLK LI
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLNVSHHHDDHVYRNLLKDLI 120

Query: 119 VQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH 178
           VQ LLRLKEP+VLLRCRKDD HLVE+VL+SA +EYA+K  V PPEIIVD+ +YLPPG  H
Sbjct: 121 VQCLLRLKEPSVLLRCRKDDLHLVENVLDSAAQEYAEKANVDPPEIIVDNQVYLPPGLTH 180

Query: 179 HNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
            N+H   CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPE+
Sbjct: 181 QNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEI 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2136088	230	TUF "AT4G11150" [Arabidopsis t	0.986	0.956	0.736	2.6e-79
TAIR|locus:2024527	237	VHA-E3 "AT1G64200" [Arabidopsi	0.986	0.928	0.712	1e-77
TAIR|locus:2077893	235	VHA-E2 "vacuolar H+-ATPase sub	0.986	0.936	0.666	1.7e-73
FB|FBgn0015324	226	Vha26 "Vacuolar H[+]-ATPase 26	0.932	0.920	0.434	3.6e-41
UNIPROTKB|F1S5M0	226	ATP6V1E2 "Uncharacterized prot	0.937	0.924	0.427	3.6e-41
UNIPROTKB|Q32LB7	226	ATP6V1E2 "V-type proton ATPase	0.937	0.924	0.427	9.6e-41
UNIPROTKB|P11019	226	ATP6V1E1 "V-type proton ATPase	0.928	0.915	0.423	2.6e-40
MGI|MGI:894326	226	Atp6v1e1 "ATPase, H+ transport	0.928	0.915	0.423	2.6e-40
UNIPROTKB|E2R1R4	226	ATP6V1E1 "Uncharacterized prot	0.928	0.915	0.423	3.3e-40
ZFIN|ZDB-GENE-041212-51	226	atp6v1e1a "ATPase, H+ transpor	0.937	0.924	0.395	3.3e-40

TAIR|locus:2136088 TUF "AT4G11150" [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 162/220 (73%), Positives = 186/220 (84%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEK
Sbjct:     1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ
Sbjct:    61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXX 180
              LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+L        
Sbjct:   121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSND 180

Query:   181 XXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
                  CSGGVV+ASRDGKIVCENTLDARLDV FR KLP +
Sbjct:   181 PHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVI 220

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA;TAS

GO:0009409 "response to cold" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0007030 "Golgi organization" evidence=RCA;IMP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=IMP

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2024527 VHA-E3 "AT1G64200" [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 161/226 (71%), Positives = 186/226 (82%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct:     1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRD------HNSYKKLL 114
             QV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LL
Sbjct:    61 QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120

Query:   115 KGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXX 174
             K LIVQ LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+L  
Sbjct:   121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPP 180

Query:   175 XXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
                       SC+GGVV+ASRDGKIVCENTLDARL+V FR KLPE+
Sbjct:   181 APSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEI 226

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2077893 VHA-E2 "vacuolar H+-ATPase subunit E isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 148/222 (66%), Positives = 185/222 (83%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK K
Sbjct:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             QV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++
Sbjct:    61 QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXX 180
             SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++L        
Sbjct:   121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKL 180

Query:   181 XXXXS--CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
                    CSGGVV+AS+DGKIVCENTLDARLDV FR+KLP++
Sbjct:   181 PDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQI 222

GO:0005634 "nucleus" evidence=ISM

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

FB|FBgn0015324 Vha26 "Vacuolar H[+]-ATPase 26kD subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 96/221 (43%), Positives = 150/221 (67%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             QVE++KKI+ S  LN +R+KVL+ ++D VS++++ A K +  V+++ + Y+ +L  LIVQ
Sbjct:    63 QVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLIVQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP-EIIVDHHIYLXXXXXXX 179
              L ++ EP V+LRCR+ D  LV +VL +A E+Y  K Q++   E+ +D   +L       
Sbjct:   123 GLFQIMEPKVILRCREVDVPLVRNVLPAAVEQY--KAQINQNVELFIDEKDFLSAD---- 176

Query:   180 XXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
                  +C GGV + + +G+I   NTL++RLD++ ++ +PE+
Sbjct:   177 -----TC-GGVELLALNGRIKVPNTLESRLDLISQQLVPEI 211

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1S5M0 ATP6V1E2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 94/220 (42%), Positives = 139/220 (63%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++D DV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDVDVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S   N +R+KVL+A++DL+S ++  A   +  +  D   Y+ LL  L++Q
Sbjct:    63 QIEQQKKIQMSTMRNQARLKVLRARNDLISELLNDAKLSLSRIVADQEVYQALLDKLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXX 180
              LLRL EP V++RCR  D  LV++ ++ A  +Y      H  E+ VD  + L        
Sbjct:   123 GLLRLLEPVVIIRCRPQDLFLVKAAVQKAIPQYTTISHKHV-EVQVDQEVQLAT------ 175

Query:   181 XXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
                   +GGV V S D +I   NTL++RLD++F++K+PE+
Sbjct:   176 ----DAAGGVEVYSGDQRIKVSNTLESRLDLLFQQKMPEI 211

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|Q32LB7 ATP6V1E2 "V-type proton ATPase subunit E 2" [Bos taurus (taxid:9913)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 94/220 (42%), Positives = 140/220 (63%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++D DV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDVDVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S   N +R+KVL+A++DL+S ++  A   +  +  D   Y+ LL  L++Q
Sbjct:    63 QIEQQKKIQMSTLRNQARLKVLRARNDLISELLNDAKLRLSRIVTDPEFYQGLLDKLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXX 180
              LLRL EP V++RCR  DH LVE+ ++ A  +Y   +     E+ VD  + L        
Sbjct:   123 GLLRLLEPVVIVRCRPQDHFLVEAAVQRAIPQYTA-VSHRCVEVQVDKEVQLATDT---- 177

Query:   181 XXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
                   +GGV V S D +I+  NTL++RLD++ ++K+PE+
Sbjct:   178 ------TGGVEVYSSDQRIMVSNTLESRLDLLSQQKMPEI 211

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|P11019 ATP6V1E1 "V-type proton ATPase subunit E 1" [Bos taurus (taxid:9913)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 94/222 (42%), Positives = 144/222 (64%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXX 178
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL      
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDV---DVQIDQEAYLPE---- 175

Query:   179 XXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
                     +GGV + + D KI   NTL++RLD++ ++ +PEV
Sbjct:   176 ------EIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEV 211

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

MGI|MGI:894326 Atp6v1e1 "ATPase, H+ transporting, lysosomal V1 subunit E1" [Mus musculus (taxid:10090)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 94/222 (42%), Positives = 144/222 (64%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXX 178
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL      
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQEAYLPE---- 175

Query:   179 XXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
                     +GGV + + D KI   NTL++RLD++ ++ +PEV
Sbjct:   176 ------EIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEV 211

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IGI

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IGI

GO:0015992 "proton transport" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|E2R1R4 ATP6V1E1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 94/222 (42%), Positives = 144/222 (64%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXX 178
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL      
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQESYLPE---- 175

Query:   179 XXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
                     +GGV + + D KI   NTL++RLD++ ++ +PEV
Sbjct:   176 ------EIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEV 211

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

ZFIN|ZDB-GENE-041212-51 atp6v1e1a "ATPase, H+ transporting, lysosomal , V1 subunit E1a" [Danio rerio (taxid:7955)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 87/220 (39%), Positives = 147/220 (66%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DA V KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDAAVQKQIKHMMAFIDQEASEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DD++ +++  A + +  +++D N Y+ LL+GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLKARDDMIKDLLNDARERLATIAKDPNQYQTLLEGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXX 180
                +L EP V++RCRK+D  +V++ ++     Y + ++ +  E+ +D + +L        
Sbjct:   123 GFYQLLEPRVIIRCRKEDVAMVQTAVQKNIPIYKEAVKSNI-EVRIDENTFLSP------ 175

Query:   181 XXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
                   SGGV V + DG+I   NTL++RLD++ ++ +P++
Sbjct:   176 ----DISGGVEVYNADGRIKASNTLESRLDLLAQQMMPDI 211

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00780	VATE_DICDI	No assigned EC number	0.3807	0.9686	0.9270	yes	no
Q40272	VATE_MESCR	No assigned EC number	0.7681	0.9820	0.9690	N/A	no
Q6PCU2	VATE1_RAT	No assigned EC number	0.4279	0.9282	0.9159	yes	no
P54611	VATE_DROME	No assigned EC number	0.4272	0.9372	0.9247	yes	no
P0CAN7	VATE3_ARATH	No assigned EC number	0.7300	0.9865	0.9282	no	no
P11019	VATE1_BOVIN	No assigned EC number	0.4279	0.9282	0.9159	yes	no
O23948	VATE_GOSHI	No assigned EC number	0.8157	0.9820	0.9240	N/A	no
Q39258	VATE1_ARATH	No assigned EC number	0.7660	0.9775	0.9478	yes	no
P50518	VATE1_MOUSE	No assigned EC number	0.4279	0.9282	0.9159	yes	no
O13687	VATE_SCHPO	No assigned EC number	0.3181	0.9417	0.9251	yes	no
Q9SWE7	VATE_CITLI	No assigned EC number	0.9909	0.9865	0.9565	N/A	no
P22203	VATE_YEAST	No assigned EC number	0.3348	0.9237	0.8841	yes	no
Q41396	VATE_SPIOL	No assigned EC number	0.7954	0.9820	0.9563	N/A	no
P36543	VATE1_HUMAN	No assigned EC number	0.4279	0.9282	0.9159	yes	no
Q9MB46	VATE_CITUN	No assigned EC number	0.9954	0.9865	0.9565	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002474001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (230 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00029599001	SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (849 aa)						•			0.899
	GSVIVG00026188001	SubName- Full=Putative uncharacterized protein (Chromosome chr15 scaffold_37, whole genome shot [...] (222 aa)						•			0.899
	GSVIVG00024902001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (232 aa)						•			0.899
	GSVIVG00022618001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (606 aa)						•			0.899
	GSVIVG00013522001	SubName- Full=Chromosome undetermined scaffold_495, whole genome shotgun sequence; (285 aa)						•			0.899
	VPP	SubName- Full=Chromosome chr11 scaffold_170, whole genome shotgun sequence; (764 aa)						•			0.899
	GSVIVG00003295001	SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (767 aa)						•			0.899
	GSVIVG00000475001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (214 aa)						•			0.899
	GSVIVG00018828001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (261 aa)	•			•	•	•	•		0.768
	GSVIVG00015498001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (509 aa)	•			•	•	•	•		0.643

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
pfam01991	195	pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) su	8e-70
COG1390	194	COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su	5e-21
PRK02292	188	PRK02292, PRK02292, V-type ATP synthase subunit E;	1e-07
PRK03963	198	PRK03963, PRK03963, V-type ATP synthase subunit E;	2e-07

>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit

 Score =  211 bits (539), Expect = 8e-70
 Identities = 96/205 (46%), Positives = 132/205 (64%), Gaps = 15/205 (7%)

Query: 16  FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLN 75
           FIRQEAEEKA EI   AEEEF IEK + VE  +KKI + YE+KEKQ E+ K+I  S   N
Sbjct: 1   FIRQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKN 60

Query: 76  ASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCR 135
            +R+KVL A+++L+ ++ E A + + N+S D + YK LLK LI Q+L++L EP V++R R
Sbjct: 61  EARLKVLNAREELLDSVFEEAKERLANLSEDKDEYKDLLKDLIKQALVKLGEPKVIVRSR 120

Query: 136 KDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASR 195
           ++D  LV+S L+ AKEEY +K      E I D+                 C GGVV+ + 
Sbjct: 121 EEDEELVKSALDEAKEEYKEKTGKDTVETIGDN---------------IDCIGGVVLETE 165

Query: 196 DGKIVCENTLDARLDVVFRKKLPEV 220
           DGKI  +NTL+ARL+ VF + LPE+
Sbjct: 166 DGKIRVDNTLEARLERVFEQLLPEI 190

This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit. Length = 195

>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

 Score = 86.3 bits (214), Expect = 5e-21
 Identities = 56/211 (26%), Positives = 105/211 (49%), Gaps = 27/211 (12%)

Query: 10  IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE 69
           ++++++ I +EAEE+A EI   A EE    K +     ++ I +   + EK+ E  ++  
Sbjct: 4   LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRI 63

Query: 70  YSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPA 129
            S  L  +R K+L+A+++++ ++ EA  +++ N++ D     + L+ L++++L +L    
Sbjct: 64  ISSALLEARRKLLEAKEEILESVFEAVEEKLRNIASD--PEYESLQELLIEALEKLLGGE 121

Query: 130 VLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGG 189
           +++   + D  LVE +L   K                          G     G    GG
Sbjct: 122 LVVYLNEKDKALVEQILRELK-------------------------IGVELGEGIDIIGG 156

Query: 190 VVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
           VVV SRDGKI  +NT ++ L+ V  + LPE+
Sbjct: 157 VVVESRDGKIRLDNTFESILERVLEELLPEI 187

Length = 194

>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 38/207 (18%)

Query: 17  IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK-EKQVE-IRKKIEYSMQL 74
           IR EA  +A+EI   A+EE   E +   EA+ ++I ++ E + E+++E +R++   S +L
Sbjct: 10  IRDEARARASEIRAEADEEAE-EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKL 68

Query: 75  NASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRC 134
            A R + L A+ +++ ++      E+ ++  D    ++L K L+  +        V +  
Sbjct: 69  EAKRER-LNARKEVLEDVRNQVEDEIASLDGDKR--EELTKSLLDAA----DADGVRVYS 121

Query: 135 RKDDHHLVESVLESAKE-EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVA 193
           RKDD  LV+S+L      EYA  +                            C GGVVV 
Sbjct: 122 RKDDEDLVKSLLSDYDGLEYAGNID---------------------------CLGGVVVE 154

Query: 194 SRDGKIVCENTLDARLDVVFRKKLPEV 220
           S DG++   NT D+ L+ V+   L E+
Sbjct: 155 SEDGRVRVNNTFDSILEDVWEDNLKEI 181

Length = 188

>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 55/203 (27%), Positives = 97/203 (47%), Gaps = 28/203 (13%)

Query: 11  QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK--KIRQEYERKEK-QVEIRKK 67
           + +++ I +EAE+K   I   A++E   EK++  EA K+     +   RK K Q E+ K+
Sbjct: 5   ELIIQEINREAEQKIEYILEEAQKE--AEKIK-EEARKRAESKAEWILRKAKTQAELEKQ 61

Query: 68  IEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE 127
              +      R K L  Q++L+S ++EA  + +  +  D   Y + LK L  +++  L E
Sbjct: 62  RIIANAKLEVRRKRLAVQEELISEVLEAVRERLAELPEDE--YFETLKALTKEAVEELGE 119

Query: 128 PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS 187
             V++R  +    L++S LE  ++E          EI +   I                 
Sbjct: 120 DKVVVRSNERTLKLIDSRLEEIRDELGDV------EIELGEPI--------------ETI 159

Query: 188 GGVVVASRDGKIVCENTLDARLD 210
           GGV+V ++DG I  +NT +AR++
Sbjct: 160 GGVIVETKDGTIRVDNTFEARME 182

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
KOG1664	220	consensus Vacuolar H+-ATPase V1 sector, subunit E	100.0
PRK03963	198	V-type ATP synthase subunit E; Provisional	100.0
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	100.0
PRK02292	188	V-type ATP synthase subunit E; Provisional	99.97
PRK01194	185	V-type ATP synthase subunit E; Provisional	99.97
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	99.96
PRK01558	198	V-type ATP synthase subunit E; Provisional	99.93
PRK01005	207	V-type ATP synthase subunit E; Provisional	99.85
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	99.62
PRK09098	233	type III secretion system protein HrpB; Validated	99.56
PRK06937	204	type III secretion system protein; Reviewed	99.56
PRK06669	281	fliH flagellar assembly protein H; Validated	99.5
PRK06328	223	type III secretion system protein; Validated	99.49
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	99.28
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	99.27
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	99.06
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	98.97
PRK13386	236	fliH flagellar assembly protein H; Provisional	98.93
PRK05687	246	fliH flagellar assembly protein H; Validated	98.88
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	98.82
PF06635	207	NolV: Nodulation protein NolV; InterPro: IPR010586	98.66
PRK06032	199	fliH flagellar assembly protein H; Validated	98.63
PRK08475	167	F0F1 ATP synthase subunit B; Validated	98.33
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	98.29
PRK13436	179	F0F1 ATP synthase subunit delta; Provisional	97.33
PRK01005	207	V-type ATP synthase subunit E; Provisional	97.3
PRK08404	103	V-type ATP synthase subunit H; Validated	96.98
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	96.92
PRK03963	198	V-type ATP synthase subunit E; Provisional	96.92
PRK07352	174	F0F1 ATP synthase subunit B; Validated	96.9
PRK06231	205	F0F1 ATP synthase subunit B; Validated	96.85
PRK02292	188	V-type ATP synthase subunit E; Provisional	96.79
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	96.78
CHL00019	184	atpF ATP synthase CF0 B subunit	96.78
PRK01558	198	V-type ATP synthase subunit E; Provisional	96.74
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	96.72
PRK13434	184	F0F1 ATP synthase subunit delta; Provisional	96.72
PRK01194	185	V-type ATP synthase subunit E; Provisional	96.65
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	96.65
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	96.58
PRK05759	156	F0F1 ATP synthase subunit B; Validated	96.44
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	96.41
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	96.31
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	96.3
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	96.28
PRK09173	159	F0F1 ATP synthase subunit B; Validated	96.2
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	96.05
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	96.02
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	95.92
COG0712	178	AtpH F0F1-type ATP synthase, delta subunit (mitoch	95.92
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	95.9
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	95.87
PRK13441	180	F0F1 ATP synthase subunit delta; Provisional	95.72
PRK06568	154	F0F1 ATP synthase subunit B; Validated	95.72
PRK09098	233	type III secretion system protein HrpB; Validated	95.69
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	95.61
PRK15322	210	invasion protein OrgB; Provisional	95.46
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	95.32
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	95.25
PRK15354	224	type III secretion system protein SsaK; Provisiona	95.19
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	95.17
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	95.09
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	95.04
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	94.98
PRK08475	167	F0F1 ATP synthase subunit B; Validated	94.86
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	94.85
PRK06231	205	F0F1 ATP synthase subunit B; Validated	94.79
PRK09173	159	F0F1 ATP synthase subunit B; Validated	94.72
TIGR01145	172	ATP_synt_delta ATP synthase, F1 delta subunit. Thi	94.71
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	94.63
PRK00106	535	hypothetical protein; Provisional	94.48
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	94.37
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	94.29
PRK08404	103	V-type ATP synthase subunit H; Validated	94.26
PRK05758	177	F0F1 ATP synthase subunit delta; Validated	94.16
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	94.08
CHL00019	184	atpF ATP synthase CF0 B subunit	93.94
PRK07352	174	F0F1 ATP synthase subunit B; Validated	93.59
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	93.51
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	93.49
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	93.49
CHL00119	184	atpD ATP synthase CF1 delta subunit; Validated	93.33
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	93.31
PRK06669	281	fliH flagellar assembly protein H; Validated	93.31
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	93.29
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	93.21
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	93.08
PRK13429	181	F0F1 ATP synthase subunit delta; Provisional	92.99
PRK08474	176	F0F1 ATP synthase subunit delta; Validated	92.64
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	92.24
PF00213	172	OSCP: ATP synthase delta (OSCP) subunit; InterPro:	92.03
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	91.98
PRK00106	535	hypothetical protein; Provisional	91.71
PRK12704	520	phosphodiesterase; Provisional	91.47
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	91.45
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	90.96
PRK12704	520	phosphodiesterase; Provisional	90.9
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	90.68
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	90.12
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	90.07
PRK05759	156	F0F1 ATP synthase subunit B; Validated	89.99
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	89.94
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	88.81
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	88.45
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	88.32
KOG1662	210	consensus Mitochondrial F1F0-ATP synthase, subunit	88.24
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	88.24
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	85.73
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	83.8
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	82.21
PRK10780	165	periplasmic chaperone; Provisional	81.7
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	80.05

>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]

Probab=100.00  E-value=3.4e-53  Score=342.19  Aligned_cols=211  Identities=55%  Similarity=0.821  Sum_probs=207.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450            1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK   80 (223)
Q Consensus         1 m~~~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~   80 (223)
                      |||+||++||++|++||++||++||+||...|++||++||.+|+++++.+|++.|++++++++++++++.|..+|++|++
T Consensus         1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK   80 (220)
T KOG1664|consen    1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK   80 (220)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCC
Q 027450           81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH  160 (223)
Q Consensus        81 ~L~ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~  160 (223)
                      +|++|+++|+.+|++|+.+|...+.+++.|+.+|.+||.||+..+.+|.++|+|++.|..+|+++++++...|....|.+
T Consensus        81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~~  160 (220)
T KOG1664|consen   81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGVG  160 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999889999999999999999999999999999999999999999999999999995


Q ss_pred             CCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450          161 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH  222 (223)
Q Consensus       161 ~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~  222 (223)
                       .++.+|++.|||+          +|.|||+|.|.||+|.|+|||++||+.++++++|+||+
T Consensus       161 -~e~~id~~~fL~~----------~~~GGVvl~s~dgkI~v~NTLesRLeli~~q~lPeIR~  211 (220)
T KOG1664|consen  161 -VEVQIDKKDFLPP----------DVAGGVVLYSRDGKIKVSNTLESRLELIAEQKLPEIRK  211 (220)
T ss_pred             -ceeeechhccCCc----------cccCCeEEEcCCCceEecCcHHHHHHHHHHHhhHHHHH
Confidence             8999999999986          89999999999999999999999999999999999985

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=100.00  E-value=2.5e-33  Score=232.46  Aligned_cols=188  Identities=26%  Similarity=0.394  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQE----YERKEKQVEIRKKIEYSMQLNASRIKVLQAQ   85 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~----~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar   85 (223)
                      |+++++.|+++|+.++++|..+|+.+++    .++++...+....    .++...+++..+++.+|...+..|+.+|.+|
T Consensus         4 l~~i~~~il~~A~~ea~~il~~A~~~a~----~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar   79 (198)
T PRK03963          4 AELIIQEINREAEQKIEYILEEAQKEAE----KIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQ   79 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999998    6666555555443    3444556777788889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 027450           86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII  165 (223)
Q Consensus        86 ~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~  165 (223)
                      +++++++|..|+++|.+++.+  .|+.||.+||.+|+..+++++++|+|+|.|..++.++++.+...+    |  ++++.
T Consensus        80 ~el~~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~~~----~--~~~i~  151 (198)
T PRK03963         80 EELISEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRDEL----G--DVEIE  151 (198)
T ss_pred             HHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHHHh----C--CeEEE
Confidence            999999999999999999886  799999999999999999899999999999999999887765443    3  24555


Q ss_pred             eccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhcC
Q 027450          166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFHF  223 (223)
Q Consensus       166 id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~~  223 (223)
                      ++.       |       ++|.|||||+|+||+|+|||||++||+.+|++++|.|+++
T Consensus       152 ~~~-------~-------~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i~~~  195 (198)
T PRK03963        152 LGE-------P-------IETIGGVIVETKDGTIRVDNTFEARMERLESELRAKIAKA  195 (198)
T ss_pred             ECC-------C-------CCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHHHHH
Confidence            542       1       3799999999999999999999999999999999999863

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=4.1e-33  Score=230.18  Aligned_cols=195  Identities=32%  Similarity=0.441  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (223)
Q Consensus        16 ~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~~~   95 (223)
                      +|.++|+.+|++|..+|+++++..+..+.++....+...+++..++++..+.+..|...+..|..+|.+|+++++++|++
T Consensus         1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~   80 (198)
T PF01991_consen    1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE   80 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999997777777777777777777788889999999999999999999999999999999999


Q ss_pred             HHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCC
Q 027450           96 ASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG  175 (223)
Q Consensus        96 a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~~L~~~  175 (223)
                      ++++|.+++.+++.|..+|.+||.+++..+++++++|+|+|+|.++++.+++.+...|+...|..++.+..+. .+|   
T Consensus        81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~---  156 (198)
T PF01991_consen   81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DYL---  156 (198)
T ss_dssp             HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T-------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-ccc---
Confidence            9999999999865799999999999999999899999999999999999877666667655444223444442 222   


Q ss_pred             CCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450          176 PGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH  222 (223)
Q Consensus       176 ~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~  222 (223)
                              ++++|||+++++||+|+|||||++||+.+++.+.|.|++
T Consensus       157 --------~~~~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i~~  195 (198)
T PF01991_consen  157 --------IDIIGGFILESEDGKIRVDNTFESRLERLKEEIRPEIAK  195 (198)
T ss_dssp             --------BSSSSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHHHH
T ss_pred             --------CCccceEEEEECCCCEEEECCHHHHHHHHHHHhHHHHHH
Confidence                    279999999999999999999999999999999999975

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=99.97  E-value=5.6e-30  Score=210.92  Aligned_cols=177  Identities=28%  Similarity=0.450  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK----EKQVEIRKKIEYSMQLNASRIKVLQAQ   85 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~----~~~~e~~~~~~~S~~~~~~R~~~L~ar   85 (223)
                      |+++++.|+++|+.++++|+.+|+++++    .|+.++..++.+-....    .+++....++..|...+..|..+|.+|
T Consensus         3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~----~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r   78 (188)
T PRK02292          3 LETVVEDIRDEARARASEIRAEADEEAE----EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR   78 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999988    88888877755444333    334445566778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 027450           86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII  165 (223)
Q Consensus        86 ~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~  165 (223)
                      +++++++|..|+++|.+++.+  .|..||.+||.++    ++++++|+|+|.|..+++.++..    +++      ++  
T Consensus        79 ~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~----~~~------~~--  140 (188)
T PRK02292         79 KEVLEDVRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSD----YDG------LE--  140 (188)
T ss_pred             HHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHh----ccc------Ce--
Confidence            999999999999999999986  7999999999998    45788999999999999987753    211      12  


Q ss_pred             eccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450          166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH  222 (223)
Q Consensus       166 id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~  222 (223)
                      +.      ++        ++|.|||||+|++|+|+|||||++||+.+|++++|.|++
T Consensus       141 ~~------~~--------~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i~~  183 (188)
T PRK02292        141 YA------GN--------IDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISD  183 (188)
T ss_pred             eC------CC--------CCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHHHH
Confidence            21      11        378999999999999999999999999999999999986

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=99.97  E-value=2.4e-29  Score=206.73  Aligned_cols=170  Identities=18%  Similarity=0.287  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER----KEKQVEIRKKIEYSMQLNASRIKVLQAQ   85 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~----~~~~~e~~~~~~~S~~~~~~R~~~L~ar   85 (223)
                      |+++++.|+++|+.+|++|..+|+.+++    .|+.++..++.+..+.    ...++...+++.+|.+...+|+.+|.+|
T Consensus         3 le~i~~~I~~ea~~~a~~I~~eA~~~ae----ei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~ar   78 (185)
T PRK01194          3 LEDVIKDIEKSREEKKKEINDEYSKRIE----KLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKR   78 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            7899999999999999999999999998    8888887766554433    3456677788888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 027450           86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII  165 (223)
Q Consensus        86 ~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~  165 (223)
                      +++|+++|+.|.++|.+++.++ .|+++|.+||.+|+..+ +++++|+|++.|..++++.                 .++
T Consensus        79 ee~I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~l-~~~~~v~~~~~D~~~i~~~-----------------~l~  139 (185)
T PRK01194         79 REILKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKTL-GEDCIIKVSESDKKKINNA-----------------KIK  139 (185)
T ss_pred             HHHHHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHhc-CCCeEEEEcHHhHHHHHhC-----------------cee
Confidence            9999999999999999999766 89999999999999985 5789999999999988751                 233


Q ss_pred             eccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhh
Q 027450          166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVF  221 (223)
Q Consensus       166 id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir  221 (223)
                      +.     +          .+|.|||||+|.||+|.+||||++.++    .++|.||
T Consensus       140 ~~-----~----------~~~~GGvil~s~dG~I~ld~~l~~~~~----~~~~~iR  176 (185)
T PRK01194        140 FA-----D----------IDPYGGILAYSRDGKRELDLRLSSIFE----NILEDLK  176 (185)
T ss_pred             eC-----C----------ccccccEEEEeCCCcEEehhhHHHHHH----HhHHHHH
Confidence            22     1          379999999999999999999999665    5556665

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=99.96  E-value=9.5e-28  Score=197.96  Aligned_cols=186  Identities=30%  Similarity=0.448  Sum_probs=161.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i   89 (223)
                      ++.++++|.++|+++|++|...|.++++..+.+........++..+.+..++++..+++++|.+.+.+|..+|+++++++
T Consensus         4 ~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l   83 (194)
T COG1390           4 LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEIL   83 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999996666666666666666667778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccc
Q 027450           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHH  169 (223)
Q Consensus        90 ~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~  169 (223)
                      +.+|+.+.++|.+++.+| .|.. |..|+.+++..+.+++++|++++.|.+++.+++.+.        +   ....+   
T Consensus        84 ~~~~~~~~e~L~~i~~~~-~~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~~--------~---~~~~~---  147 (194)
T COG1390          84 ESVFEAVEEKLRNIASDP-EYES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILREL--------K---IGVEL---  147 (194)
T ss_pred             HHHHHHHHHHHHcCcCCc-chHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhhc--------c---cchhc---
Confidence            999999999999999997 5665 999999999999999999999999999988776531        0   11111   


Q ss_pred             cCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450          170 IYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH  222 (223)
Q Consensus       170 ~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~  222 (223)
                         +++        ++|.|||++++.||++.+||||++||+..++.+.|.|+.
T Consensus       148 ---~~~--------~d~~GGvvv~~~dG~i~~dnt~~sil~~~~e~~~~~i~~  189 (194)
T COG1390         148 ---GEG--------IDIIGGVVVESRDGKIRLDNTFESILERVLEELLPEISE  189 (194)
T ss_pred             ---ccc--------CCCcceEEEEeCCCceeecCcHHHHHHHHHHHHHHHHHH
Confidence               211        479999999999999999999999999999999999974

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=99.93  E-value=1.5e-23  Score=174.09  Aligned_cols=192  Identities=21%  Similarity=0.253  Sum_probs=156.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450            3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL   82 (223)
Q Consensus         3 ~~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L   82 (223)
                      +++++.=+++|.+.|.++|+.+|++|.++|+++|+    .|+++++.+...-..+..++++..+++..|+.....|..+|
T Consensus         2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe----~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll   77 (198)
T PRK01558          2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEAE----EIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI   77 (198)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888889999999999999999999999999999    99999998887777777788888788888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 027450           83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP  162 (223)
Q Consensus        83 ~ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~  162 (223)
                      .+++.+++.+...+.+.+.+.. +++.|..++.+|+..++   +++++.|+++|+|...+++.+..   .++...|.   
T Consensus        78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~~---~~~~~l~~---  147 (198)
T PRK01558         78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILRA---ALGNKLKK---  147 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHHH---HHHHHhcC---
Confidence            9999999855444444445333 44489999999999875   45678999999999999876543   33333332   


Q ss_pred             eEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450          163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH  222 (223)
Q Consensus       163 ~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~  222 (223)
                      .+++..      +        .+|.|||+|.+.||++.+||||+++++...+.+-|.+++
T Consensus       148 gi~i~~------~--------~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~~~~~  193 (198)
T PRK01558        148 GIELKP------F--------KGISKGFKIQQKDGSLYYDFSAEAIADILFSYLNPRFKE  193 (198)
T ss_pred             CeEEcc------c--------CCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhcHHHHH
Confidence            244432      1        379999999999999999999999999999999999875

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=99.85  E-value=3.7e-19  Score=148.27  Aligned_cols=187  Identities=12%  Similarity=0.129  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450            4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQ   83 (223)
Q Consensus         4 ~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~   83 (223)
                      +.++.=+++|.+.|+.+|+.+|.+|+.+|+++++    .|+++++.+...-.+...++++..+++..|......|..+|.
T Consensus         8 ~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~   83 (207)
T PRK01005          8 DKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLES   83 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455557788888999999999999999999998    899999988888888888888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCC----c----EEEEecccchHHHHHHHHHHHHHHHH
Q 027450           84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP----A----VLLRCRKDDHHLVESVLESAKEEYAQ  155 (223)
Q Consensus        84 ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~----e----~~v~~~~~D~~lv~~~~~~~~~~~~~  155 (223)
                      +++++++.+|..+.++|..-.-++   ++||.+||...+......    +    +...++|.+..-.  +...+.+.+..
T Consensus        84 aKqevi~~vf~~a~~~lv~~~~~d---~~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~l~~  158 (207)
T PRK01005         84 LKQAVENKIFRESLGEWLEHVLTD---PEVSAKLIQALVQAIEAQGISGNLTAYIGKHVSARAVNEL--LGKEVTKKLKE  158 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhhcccccccchhhhhcCCHHHHHHH--HHHHHHHHHHH
Confidence            999999999999999998754432   688888888777665322    1    3335566554432  33332333321


Q ss_pred             hhCCCCCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450          156 KLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH  222 (223)
Q Consensus       156 ~~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~  222 (223)
                         .   .+++.                 ...|||+|.+.||++.+|||++++++.+|+.+.|.++.
T Consensus       159 ---~---gv~~~-----------------~~~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~~~~~~  202 (207)
T PRK01005        159 ---K---GVSVG-----------------SFVGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQKDFRE  202 (207)
T ss_pred             ---c---CeEEe-----------------ccCCceEEEecCCeeEEeCcHHHHHHHHHHHhhHHHHH
Confidence               1   14443                 12699999999999999999999999999999999985

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=99.62  E-value=2.5e-13  Score=117.01  Aligned_cols=185  Identities=17%  Similarity=0.151  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHH----HHHHHHHHH-
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQL--------------VEAEKKKIRQEYERKEKQ----VEIRKKIEY-   70 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i--------------~~~~k~~i~~~~~~~~~~----~e~~~~~~~-   70 (223)
                      +..-...++.+|+.+|.+|..+|+.+++.-+..+              +++++.   +.|+....+    +..+....+ 
T Consensus        38 ~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~---eGy~eG~~~G~~e~~~~~~~~i~  114 (255)
T TIGR03825        38 EEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQ---EGYEAGFQAGESEALSIYQSTID  114 (255)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677788888888888888887777443333              222221   123222221    111111101 


Q ss_pred             --HHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHH
Q 027450           71 --SMQLNASR---IKVL-QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVE  143 (223)
Q Consensus        71 --S~~~~~~R---~~~L-~ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~  143 (223)
                        ...+...+   ...+ ..+.++++=++.-|..=+......   -+..+..|+.+++..++. +.++|+|+|.|.+.+.
T Consensus       115 ~a~~i~~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el~~---~~e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v~  191 (255)
T TIGR03825       115 EANAIVEEAKDDYEEKIESAQPLIIELACALAEKVIGVSLAE---DKNAFQALVRQVLSEVREFDEVSIYVHPHWYERVA  191 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhccCCCcEEEEECHHHHHHHH
Confidence              11111221   1222 244555555555555544443322   245689999999998887 6799999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhh
Q 027450          144 SVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV  220 (223)
Q Consensus       144 ~~~~~~~~~~~~~~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~I  220 (223)
                      .....+...++...   .+.|..|+  .             -..|||+|.|.+|.  ||+|+++||+.+++.++-.+
T Consensus       192 ~~~~~l~~~~~~~~---~i~i~~D~--~-------------l~~GgcvIEt~~G~--iDasldtqLe~l~~~l~~~l  248 (255)
T TIGR03825       192 AQKDELQSILPACE---HLAVYPDE--K-------------LPDGGCYVETNFGR--IDASVDTQLEQLKEKLLEAL  248 (255)
T ss_pred             HhHHHHHhhcCCCC---ceEEEeCC--C-------------CCCCCeEEEcCCce--EEeeHHHHHHHHHHHHHHHH
Confidence            87776665554322   24555553  2             34699999999998  89999999999999887655

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK09098 type III secretion system protein HrpB; Validated

Probab=99.56  E-value=2.4e-12  Score=109.43  Aligned_cols=181  Identities=17%  Similarity=0.151  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450            8 KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ----EYERKEKQVEIRKKIEYSMQLNASRIKVLQ   83 (223)
Q Consensus         8 ~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~----~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~   83 (223)
                      ..+..-.+.|+..|+++|++|..+|+++++    .|++++..+-++    .|.....++..+-...+.............
T Consensus        35 ~~~~~~~~~ila~Ar~~A~~Il~~A~~~A~----~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~~~~~~~~~~~~  110 (233)
T PRK09098         35 AAVHAERDAVLAAARARAERIVAEARAQAE----AILEAARREADRSARRGYAAGLRQALAEWHARGADHAFAERRAARR  110 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677788888888888888888888888    777776654433    333333333222111111111111112233


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcC--CCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCC
Q 027450           84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP  161 (223)
Q Consensus        84 ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~--~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~  161 (223)
                      .++++++-++..++.-+...  +    +..|-..+.+++..+.  .+.++|+|+|.|.+.+...+......+    |+ .
T Consensus       111 ~e~~Lv~lv~~~v~kiv~~~--d----~~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~~----g~-~  179 (233)
T PRK09098        111 MRERLAEIVAAAVEQIVLGE--D----RAALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAAG----GR-N  179 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHhc--C----HHHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHhc----CC-C
Confidence            57788887777777666543  3    3445566777776542  368999999999999998776554333    33 2


Q ss_pred             CeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCch
Q 027450          162 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP  218 (223)
Q Consensus       162 ~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp  218 (223)
                      ..+.+-.+..|+             .||+++.|..|.  ||+||++||+.+.+-+-+
T Consensus       180 ~~l~Iv~Dp~L~-------------~GgCviET~~G~--IDasl~~ql~~L~~al~~  221 (233)
T PRK09098        180 VPVEVVGDPRLA-------------PGACVCEWDFGV--FDASLDTQLRALRRALAR  221 (233)
T ss_pred             cceEEEeCCCCC-------------CCCeEEEeCCCe--EecCHHHHHHHHHHHHHH
Confidence            234443333443             499999999998  799999999988765543

>PRK06937 type III secretion system protein; Reviewed

Probab=99.56  E-value=1.7e-12  Score=108.35  Aligned_cols=169  Identities=15%  Similarity=0.189  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (223)
Q Consensus        14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~   93 (223)
                      .+.|+..|+++|++|...|+++++..+..=.+++.           .++..+....+.........-.....+++++=++
T Consensus        32 A~~il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~-----------~~a~~e~~e~l~~~~~~~~~~~~~~e~~l~~Lvl  100 (204)
T PRK06937         32 AEELVEAARQRAEEIEAEAQEVYEQQKQLGYQAGL-----------DEARTEQAELILETVLQCQEFYRGVEQQMSEVVL  100 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999988743322222222           2211111011111111222123344566666555


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCC
Q 027450           94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL  172 (223)
Q Consensus        94 ~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~~L  172 (223)
                      .-+++=+..+  +   -+.++..++.+++..+.+ +.++|+|+|.|.+.+...+......+++. |  .+.|..|+  .|
T Consensus       101 ~ia~kil~~~--~---~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~~~-~--~l~i~~D~--~L  170 (204)
T PRK06937        101 EAVRKILNDY--D---DVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFPEV-G--YLEVVADA--RL  170 (204)
T ss_pred             HHHHHHHhcc--C---cHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCCCC-c--cEEEEeCC--CC
Confidence            5555444433  2   267888999999998876 67999999999999998776655555431 1  24555553  33


Q ss_pred             CCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCch
Q 027450          173 PPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP  218 (223)
Q Consensus       173 ~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp  218 (223)
                                   ..||+++.|..|.  ||+||++||+.+.+.+.-
T Consensus       171 -------------~~Ggc~iET~~G~--vDasl~tql~~l~~al~~  201 (204)
T PRK06937        171 -------------DQGGCILETEVGI--IDASLDGQLEALEQAFHS  201 (204)
T ss_pred             -------------CCCCeEEecCCce--EEccHHHHHHHHHHHHHH
Confidence                         4699999999998  899999999998876643

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=99.50  E-value=2.2e-11  Score=106.32  Aligned_cols=113  Identities=19%  Similarity=0.312  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 027450           84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP  162 (223)
Q Consensus        84 ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~  162 (223)
                      ...++++-++.-|.+-+..+..+   .+.++..++.+++..+.+ +.++|+|+|.|.+++...+.++...|....   .+
T Consensus       164 ~e~elv~Lal~iaekvi~~~~~~---~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~l~~~~---~i  237 (281)
T PRK06669        164 SEEEIVELALDIAKKVIKEISEN---SKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISLLDNEE---HL  237 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHhcCCCC---Ce
Confidence            55667777777776666444443   578899999999998876 679999999999999998877766665322   34


Q ss_pred             eEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchh
Q 027450          163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE  219 (223)
Q Consensus       163 ~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~  219 (223)
                      .|..|+  .|             ..|||+|.|.+|.  ||+|+++||+.+++.++..
T Consensus       238 ~I~~D~--~l-------------~~GgcvIet~~G~--IDasi~tqLe~l~~~L~e~  277 (281)
T PRK06669        238 KIYEDD--AI-------------SKGGCVIETDFGN--IDARIDTQLKQLKEKLLEN  277 (281)
T ss_pred             EEEECC--CC-------------CCCCeEEEcCCCe--eeccHHHHHHHHHHHHHhh
Confidence            555553  22             3599999999998  8999999999998876543

>PRK06328 type III secretion system protein; Validated

Probab=99.49  E-value=2.4e-11  Score=102.70  Aligned_cols=170  Identities=16%  Similarity=0.178  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (223)
Q Consensus        14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~   93 (223)
                      .+.|+..|+++|++|..+|.++++    ++.+++..   +.|+....+...... .........+   -...+++++=++
T Consensus        31 A~~il~~a~~~ae~i~~ea~~e~E----~i~eeA~~---eGy~eG~~~~~~~~~-~l~~~~~~~~---~~~e~~lv~Lal   99 (223)
T PRK06328         31 AQELLEKTKEDSEAYTQETHEECE----KLREEAKN---QGFKEGSKAWSKQLA-FLEEETQKLR---EQVKEALVPLAI   99 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHH
Confidence            568999999999999999999988    55554433   233333222111110 0111111111   223467777666


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCC
Q 027450           94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL  172 (223)
Q Consensus        94 ~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~~L  172 (223)
                      .-|++=+..-...   -+..+..++.+|+..+.. ..++|+|+|.|.+++....+++...++...   .+.|..|+  .|
T Consensus       100 ~ia~kVi~~el~~---d~e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~~~---~~~I~~D~--~L  171 (223)
T PRK06328        100 ASVKKIIGKELEL---HPETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYAD---SLIISPKA--DV  171 (223)
T ss_pred             HHHHHHHHHHHhh---CHHHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccCCC---ceEEEeCC--CC
Confidence            6666666543322   157788999999998876 579999999999999988776666665432   34666663  33


Q ss_pred             CCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCc
Q 027450          173 PPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  217 (223)
Q Consensus       173 ~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~l  217 (223)
                                   -.||++|.|..|.  ||+|+++||+.+...+.
T Consensus       172 -------------~~GgCiIET~~G~--VDasle~ql~~l~~al~  201 (223)
T PRK06328        172 -------------TPGGCIIETEAGI--INAQLDVQLAALEKAFS  201 (223)
T ss_pred             -------------CCCCeEEEeCCce--EEecHHHHHHHHHHHHH
Confidence                         3599999999998  79999999988876554

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=99.28  E-value=1.3e-09  Score=87.59  Aligned_cols=149  Identities=19%  Similarity=0.161  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 027450           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL-QAQDDLVSN   91 (223)
Q Consensus        13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L-~ar~~~i~~   91 (223)
                      -.+.|+.+|+.+|+.|+..|+++++..+..-.+++......+....+..           .. ..+..++ .....+++ 
T Consensus        14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~-----------~~-~~~~~~~~~~e~~l~~-   80 (166)
T TIGR02499        14 QAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAE-----------WQ-QEAEQLEASLEERLAE-   80 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH-HHHHHHHHHHHHHHHH-
Confidence            5788999999999999999999998555444444333333222221111           11 1111111 12233333 


Q ss_pred             HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEecccc
Q 027450           92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI  170 (223)
Q Consensus        92 v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~  170 (223)
                      ++-.+.+++..-.    ..+.++..++.+++..+.+ +.++|+|+|.|.+.+...+....    ...   ++.|..|+  
T Consensus        81 l~~~~~~kil~~~----~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~----~~~---~~~i~~D~--  147 (166)
T TIGR02499        81 LVLQALEQILGEY----DEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERL----ALE---PWELEPDA--  147 (166)
T ss_pred             HHHHHHHHHhCCC----CCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHh----ccC---CeEEeeCC--
Confidence            3333333333322    2477888888888888776 68999999999999998776432    111   13454442  


Q ss_pred             CCCCCCCCCCCCCCCccCceEEEecCCcEE
Q 027450          171 YLPPGPGHHNAHGPSCSGGVVVASRDGKIV  200 (223)
Q Consensus       171 ~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~  200 (223)
                      .             -..||++|.|.+|.|.
T Consensus       148 ~-------------l~~G~c~vet~~G~vd  164 (166)
T TIGR02499       148 S-------------LAPGACVLETESGVVD  164 (166)
T ss_pred             C-------------CCCCCEEEEeCCceee
Confidence            2             3579999999999864

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.27  E-value=5.2e-09  Score=89.11  Aligned_cols=188  Identities=17%  Similarity=0.174  Sum_probs=122.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450            3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL   82 (223)
Q Consensus         3 ~~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L   82 (223)
                      +++..+.+.+....+...+++.++.|...+++-|+    +.++.+....-++.....+ ........++...+ ....+.
T Consensus        39 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~e----eg~q~G~~eG~~~g~~~~~-~~e~~~~li~~~~~-~~~~~~  112 (234)
T COG1317          39 EEELEQALEAKEEELESAAQELQEGIEEGAREGYE----EGFQLGYEEGFEEGQEEGR-VLERLAKLIAEFQA-ELEALK  112 (234)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHH
Confidence            34566778888888888999999999888888766    5555544433222211000 00000111111111 111112


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-C-cEEEEecccchHHHHHHHHHHHHHHHHhhCC
Q 027450           83 -QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-P-AVLLRCRKDDHHLVESVLESAKEEYAQKLQV  159 (223)
Q Consensus        83 -~ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~-e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~  159 (223)
                       ....++++-++.-|++=|......   -+..+..++.+++..... . .++++|||.|.+++...+.++.    ...++
T Consensus       113 ~~~e~qLv~lvl~ia~~Vi~~~~~~---~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~----~~~~~  185 (234)
T COG1317         113 EVVEKQLVQLVLEIARKVIGKELEL---DPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEEL----SLLGW  185 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhc---CHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHH----hhcch
Confidence             245677777777777777776654   378999999999998766 3 7999999999999998886443    33444


Q ss_pred             CCCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhh
Q 027450          160 HPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVF  221 (223)
Q Consensus       160 ~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir  221 (223)
                      . ..|..|  ..             -..||++++|..|.  +|-|+++||+.+.+.++|...
T Consensus       186 ~-l~l~~D--~~-------------l~~GgC~IeTe~G~--iDasld~ql~~L~~~~~~~~~  229 (234)
T COG1317         186 R-LELVAD--PA-------------LSPGGCIIETEFGI--IDASLDTQLAALKRALLESLK  229 (234)
T ss_pred             h-eeeccC--CC-------------CCCCCeEEEecCcc--ccccHHHHHHHHHHHHHhhhc
Confidence            1 224333  23             34599999999998  799999999999998887653

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=99.06  E-value=1.5e-07  Score=80.79  Aligned_cols=172  Identities=12%  Similarity=0.164  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS   90 (223)
Q Consensus        11 ~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~   90 (223)
                      ..-....+.+|+.++.+|..+|+.+++.++..+++++..++....+.....++.++....           -..+.++.+
T Consensus        59 ~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~-----------~~l~~ei~~  127 (246)
T TIGR03321        59 RREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALS-----------DELRRRTGA  127 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence            334556777899999999999999999888888888877776655554444444333222           122333444


Q ss_pred             HHHHHHHHHHHhhccChhHHHHHHHHHHHH--------------HHHhcCCCcEEEE-ecccchHHHHHHHHHHHHHHHH
Q 027450           91 NMMEAASKEVLNVSRDHNSYKKLLKGLIVQ--------------SLLRLKEPAVLLR-CRKDDHHLVESVLESAKEEYAQ  155 (223)
Q Consensus        91 ~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~e--------------a~~~l~~~e~~v~-~~~~D~~lv~~~~~~~~~~~~~  155 (223)
                      -++..|..-|....... ....++...|.+              ++.. ++..++|. ..|=+.+....+..    .+..
T Consensus       128 la~~~A~kil~~~~d~~-~~~~lid~~i~~l~~l~~~~~~~l~~~~~~-~~~~~~v~sa~~l~~~~~~~i~~----~l~~  201 (246)
T TIGR03321       128 EVFAIARKVLTDLADTD-LEERMVDVFVQRLRTLDPDEKAALAEALAD-SGNPVLVRSAFELPEEQREQIRD----TIRE  201 (246)
T ss_pred             HHHHHHHHHHHHhcChH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHhC-CCCceEEEecCCCCHHHHHHHHH----HHHH
Confidence            44444444333322211 233333333321              1111 12234443 33333333333333    3333


Q ss_pred             hhCCCCCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450          156 KLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (223)
Q Consensus       156 ~~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~  216 (223)
                      .+|+ .+.+...-              |++++|||++..  |..++|+|+.++|+.+...+
T Consensus       202 ~~~~-~v~~~~~v--------------dp~ligGi~l~~--g~~~id~Si~~~L~~l~~~~  245 (246)
T TIGR03321       202 TLGP-EIRLRFQT--------------EPDLIGGIELTA--GGHKLAWSVDDYLESLEEDV  245 (246)
T ss_pred             HHCC-CeeEEeee--------------CchhcCceEEEE--CCEEEechHHHHHHHHHhhc
Confidence            4443 23333321              138999999998  88999999999999877653

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=98.97  E-value=2.4e-07  Score=76.66  Aligned_cols=153  Identities=20%  Similarity=0.299  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN   91 (223)
Q Consensus        12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~   91 (223)
                      .....|+++|+.+|+.|+..|+++|+    .+++.+..++.+.+-....        .+-......|..+...-......
T Consensus        30 ~~a~~IL~~A~~qA~~Il~~Ae~eAe----~l~~~a~e~a~~~~~q~a~--------~ll~~~~~~~e~l~~~l~~~~~~   97 (191)
T PF06188_consen   30 QQAREILEDARQQAEQILQQAEEEAE----ALLEQAYEQAEAQFWQQAN--------ALLQEWQQQREQLLQQLEEQAEE   97 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            35589999999999999999999998    7776555544444322211        11111222333555555667777


Q ss_pred             HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 027450           92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY  171 (223)
Q Consensus        92 v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~~  171 (223)
                      ++..+..+|..-..++..+..++..|+.+.   .+...++++|+|.+.+-|..++.+    ++    ...+.+..|  ..
T Consensus        98 ll~~al~~lL~e~~~~qrv~aLlr~l~~~~---~~~~~~tL~~hP~~~~~V~~~L~~----~~----~~~w~l~~D--~s  164 (191)
T PF06188_consen   98 LLSQALERLLDETPDQQRVAALLRQLLASQ---RQESEATLRCHPDQLEEVAAWLAE----HP----ALHWQLQAD--ES  164 (191)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHhc---ccccceEEEECHHHHHHHHHHHHh----CC----CcceeeccC--CC
Confidence            888888877664444447777887776554   345689999999999999988864    22    113566665  34


Q ss_pred             CCCCCCCCCCCCCCccCceEEEecCCcEEEe
Q 027450          172 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCE  202 (223)
Q Consensus       172 L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vd  202 (223)
                      |+             .|..++++..|.+.+|
T Consensus       165 l~-------------~~~l~L~t~~G~~~l~  182 (191)
T PF06188_consen  165 LA-------------PDQLKLETANGEFRLD  182 (191)
T ss_pred             CC-------------CCceEEEcCCCcEEEC
Confidence            54             4889999999997665

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=98.93  E-value=1.4e-07  Score=80.58  Aligned_cols=103  Identities=11%  Similarity=0.173  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC--CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 027450           85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE--PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP  162 (223)
Q Consensus        85 r~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~--~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~  162 (223)
                      ++.+++=++.-|+.-+..-...   -+..+..++.+|+..++.  ..++|+|||.|.+++...+++.      ..   .+
T Consensus       121 ~~~ll~La~~iA~~vi~~el~~---~p~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e~------~~---~~  188 (236)
T PRK13386        121 RDELLDLVEKVTRQVIRCELTL---QPQQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPEK------VQ---AW  188 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhcc------cc---Ce
Confidence            4455555555555555443222   256677999999999865  5799999999999998766531      11   35


Q ss_pred             eEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450          163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (223)
Q Consensus       163 ~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~  216 (223)
                      +|..|+  .|             ..||++|.|.+|.  ||.|+++||+.+.+.+
T Consensus       189 ~l~~D~--~l-------------~~GgC~Iet~~g~--iDa~ietRl~~~~~~l  225 (236)
T PRK13386        189 GLVADP--SL-------------SAGECRIVTDTSE--ADAGCEHRLDACMDAV  225 (236)
T ss_pred             EEEeCC--Cc-------------CCCCEEEEeCCce--EeeCHHHHHHHHHHHH
Confidence            677664  33             4599999998887  8999999999887654

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=98.88  E-value=1.4e-06  Score=74.69  Aligned_cols=108  Identities=24%  Similarity=0.297  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcC--CCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 027450           85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP  162 (223)
Q Consensus        85 r~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~--~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~  162 (223)
                      ...+++-++.-|+.-+......   -+..+..++.+++..+.  .+.++|+|+|.|.++++..+..   .+. ..   ++
T Consensus       134 e~~Lv~Lal~ia~~vi~~el~~---~~~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~~---~~~-~~---~~  203 (246)
T PRK05687        134 ESRLVQLALELARQVIGQELKT---DPSAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLGA---ELS-LH---GW  203 (246)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcc---CHHHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHhh---HHH-hC---Ce
Confidence            4556665566556555543332   25677789999999875  3679999999999999987752   222 12   35


Q ss_pred             eEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchh
Q 027450          163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE  219 (223)
Q Consensus       163 ~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~  219 (223)
                      .|..|.  .|             -.|||+|.|.+|.  ||.|+++||+.+.+.+.+.
T Consensus       204 ~l~~D~--~l-------------~~Ggc~iet~~g~--vDa~l~~r~~~l~~~l~~~  243 (246)
T PRK05687        204 RLLADP--SL-------------HRGGCRISAEEGD--VDASLETRWQEVCRLLAPG  243 (246)
T ss_pred             EEEeCC--Cc-------------CCCCeEEEeCCCc--eeccHHHHHHHHHHHHhcc
Confidence            677764  33             3599999999998  7999999999999887653

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=98.82  E-value=4e-07  Score=69.65  Aligned_cols=101  Identities=23%  Similarity=0.338  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH-HhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCC
Q 027450           84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSL-LRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP  161 (223)
Q Consensus        84 ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~-~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~  161 (223)
                      .++++++-++.-|..-+......   -+..+..++.+++ ..+.. +.++|+|+|.|.+.+...+.+....    .   +
T Consensus        25 ~~~~l~~l~~~iae~vi~~~l~~---~~~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~~----~---~   94 (128)
T PF02108_consen   25 LEQELVELALAIAEKVIGRELEE---DPEAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELPE----L---G   94 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHhh----c---C
Confidence            45666666666666555533222   2567778888888 54444 5799999999999999877632221    1   3


Q ss_pred             CeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHH
Q 027450          162 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV  211 (223)
Q Consensus       162 ~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~  211 (223)
                      ++|..|+  .|             ..|||++.|++|.  ||.|+++||+.
T Consensus        95 ~~l~~D~--~l-------------~~G~c~iet~~g~--iD~~i~~ql~~  127 (128)
T PF02108_consen   95 WELVADP--SL-------------APGDCRIETEDGI--IDASIETQLEA  127 (128)
T ss_pred             CEEEecC--CC-------------CCCCEEEEECCee--EEeCHHHHHhc
Confidence            4677764  33             3599999998887  79999999975

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []

Probab=98.66  E-value=9.1e-06  Score=67.32  Aligned_cols=168  Identities=18%  Similarity=0.165  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (223)
Q Consensus        15 ~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~~   94 (223)
                      ..++..|+..|..|...|+..|+.++.+=.+++.....+           +.-..++.........+-.-.+++.+=++.
T Consensus        33 ~~~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~e-----------~~A~llaqa~a~v~r~~a~LE~~l~~LVl~  101 (207)
T PF06635_consen   33 AAFLAAARREAQRIREWARAAYERERARGYEEGRRAGAE-----------QAARLLAQATAEVARYLAGLEQELAELVLE  101 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788889999999999999885554433333322211           111122222222111334445778887777


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCC
Q 027450           95 AASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP  173 (223)
Q Consensus        95 ~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~~L~  173 (223)
                      -+++=|..|..     .++|.+.+.+++..+.. ..++|+|.|.|.+.+...+..+. .+   .|.  .+|.|..+..|+
T Consensus       102 ~Vr~ILg~fd~-----~ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~~-~~---~g~--~~i~I~aDp~La  170 (207)
T PF06635_consen  102 IVRKILGEFDP-----DELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAALE-GR---PGR--PKIRIVADPRLA  170 (207)
T ss_pred             HHHHHHhcCCh-----HHHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhhh-cc---CCC--CceeeecCCCCC
Confidence            77777777754     56888888888887766 47999999999999998776542 22   233  245555445564


Q ss_pred             CCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchh
Q 027450          174 PGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE  219 (223)
Q Consensus       174 ~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~  219 (223)
                                   .|.+|+.|.-|.  ||-+|++-|+.+..-+.|.
T Consensus       171 -------------~~~Cvlese~G~--VdagL~aQL~ALr~a~~~~  201 (207)
T PF06635_consen  171 -------------AGQCVLESEFGV--VDAGLDAQLRALRLAFGPL  201 (207)
T ss_pred             -------------CCCeeeecccch--hhccHHHHHHHHHHHhcch
Confidence                         499999999998  7999999999998888764

The function of this family is unclear.; GO: 0009877 nodulation

>PRK06032 fliH flagellar assembly protein H; Validated

Probab=98.63  E-value=1.7e-05  Score=65.98  Aligned_cols=108  Identities=13%  Similarity=0.067  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHH-HHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 027450           85 QDDLVSNMMEAASKEVLNVSRDHNSYKK-LLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP  162 (223)
Q Consensus        85 r~~~i~~v~~~a~e~L~~~~~~~~~Y~~-~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~  162 (223)
                      ++++++=++.-++.-+......   .+. .+..++.+++..+.+ +.++|+|+|.|.+.+...+.+....+.    . ..
T Consensus        86 ~~~lv~La~~iarkvi~~~l~~---~p~a~v~~~v~eal~~l~~~~~v~I~v~P~d~~~l~~~l~~~~~~~~----~-~~  157 (199)
T PRK06032         86 ETEAADLALAVARKIAGAALAA---EPLAEITAAVRDCLRHLVATPHLVVRVNDALVEAARERLERLARESG----F-EG  157 (199)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHHHHHHHHHHhcC----c-Cc
Confidence            4445554444444444433222   233 577888888887766 569999999999999988876544432    2 23


Q ss_pred             eEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhc
Q 027450          163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRK  215 (223)
Q Consensus       163 ~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~  215 (223)
                      .+.+-.+..|+             .||++|.+.+|+  +|+|+.+++..+.+-
T Consensus       158 ~~~l~~D~~L~-------------~G~c~vet~~G~--vd~d~~~~~~~I~~a  195 (199)
T PRK06032        158 RLVVLADPDMA-------------PGDCRLEWADGG--VVRDRAAIEARIEEA  195 (199)
T ss_pred             cEEEeeCCCCC-------------CCCeEEEeCCCe--EecCHHHHHHHHHHH
Confidence            34444334443             599999999998  688888888776554

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=98.33  E-value=1.9e-05  Score=63.92  Aligned_cols=91  Identities=18%  Similarity=0.170  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i   89 (223)
                      +..-...++.+|+.++.+|..+|..+++..+..+++++........           ....+......+..+...|++++
T Consensus        75 ~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~-----------~~a~~~ie~Ek~~a~~elk~eii  143 (167)
T PRK08475         75 KKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLI-----------KSFEELMEFEVRKMEREVVEEVL  143 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667788888888888888888888777777766655544332           23344555556667888999999


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHH
Q 027450           90 SNMMEAASKEVLNVSRDHNSYKKLLKG  116 (223)
Q Consensus        90 ~~v~~~a~e~L~~~~~~~~~Y~~~L~~  116 (223)
                      +++|+.   +|.+++.+  .|.+++.+
T Consensus       144 ~~~~~~---~~~~l~~~--~y~~~~~~  165 (167)
T PRK08475        144 NELFES---KKVSLNQQ--EYVNILLK  165 (167)
T ss_pred             HHHHHh---hhcCCCHH--HHHHHHhc
Confidence            999999   89999876  79999865

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=98.29  E-value=0.00063  Score=58.58  Aligned_cols=166  Identities=15%  Similarity=0.147  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (223)
Q Consensus        14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~   93 (223)
                      ...-+.+|+.++.+|..+|+.+++.++..++.+++..+....++....++.+++.           .+-..+.++.+-++
T Consensus        62 ~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~-----------a~~~L~~~v~~la~  130 (250)
T PRK14474         62 YRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQE-----------FFKALQQQTGQQMV  130 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            4455668888888888888888888888888777766655544443333333322           22233455566666


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHH----------HH--hcCCCcEEEEe----cccchHHHHHHHHHHHHHHHH-h
Q 027450           94 EAASKEVLNVSRDHNSYKKLLKGLIVQS----------LL--RLKEPAVLLRC----RKDDHHLVESVLESAKEEYAQ-K  156 (223)
Q Consensus        94 ~~a~e~L~~~~~~~~~Y~~~L~~Li~ea----------~~--~l~~~e~~v~~----~~~D~~lv~~~~~~~~~~~~~-~  156 (223)
                      .-|.+-|....... ....++..++.+-          +.  .-++..++|+.    .|.+...+...+       .. .
T Consensus       131 ~~A~kiL~~~~d~~-~~~~lid~~i~~l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~~~~~~~~~~~l-------~~~~  202 (250)
T PRK14474        131 KIIRAALADLANAT-LEQQIVGIFIARLEHLSEAERQALANSNTTPEMLRIRTSFELSQDLRAQILESL-------HQTH  202 (250)
T ss_pred             HHHHHHHHhhcCHH-HHHHHHHHHHHHhcccCHHHHHHHHhhhcCCCCeEEEeCCCCCHHHHHHHHHHH-------HHHh
Confidence            66666666554332 3444544444221          11  01222344432    223333333333       23 2


Q ss_pred             hCCCCCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhc
Q 027450          157 LQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRK  215 (223)
Q Consensus       157 ~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~  215 (223)
                      .|. ++.+.+..      +        ++.++|+-|..  |+-.|.|||++.|+..-..
T Consensus       203 ~~~-~~~~~f~~------~--------p~li~Giel~~--~~~~i~ws~~~yl~~l~~~  244 (250)
T PRK14474        203 LIP-GTDIHFVT------S--------PELICGIELKT--EGYKIAWTLAEYLDALESQ  244 (250)
T ss_pred             cCC-CCceeeec------C--------cccccCeEEec--CCceEeccHHHHHHHHHHH
Confidence            333 33444432      1        37899999998  6677999999999876443

>PRK13436 F0F1 ATP synthase subunit delta; Provisional

Probab=97.33  E-value=0.0031  Score=51.55  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=28.4

Q ss_pred             CCccCceEEEecCCcEEEeccHHHHHHHHHhcCc
Q 027450          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  217 (223)
Q Consensus       184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~l  217 (223)
                      ++++|||++..  |.-++|.|+.+||+.+...++
T Consensus       147 pslIGGi~i~~--gd~viD~Sik~~L~~l~~~l~  178 (179)
T PRK13436        147 PKLIAGIKIKV--DNKVFENSIKSKLKELKKQVL  178 (179)
T ss_pred             HHHcCceEEEE--CCEEeehhHHHHHHHHHHHHh
Confidence            48999999998  888899999999999887664

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=97.30  E-value=0.079  Score=44.40  Aligned_cols=59  Identities=20%  Similarity=0.248  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450            6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKI   68 (223)
Q Consensus         6 ~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~   68 (223)
                      .-...+.-...|+.+|+.+|++|..+|+.+++    ++++++..++..+..+....+++..+.
T Consensus        21 iL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe----~ii~~A~~eae~ek~r~~s~a~l~~R~   79 (207)
T PRK01005         21 TLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAE----KIIRSAEETADQKLKQGESALVQAGKR   79 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456777889999999999999999999987    888888888887777666655554433

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=96.98  E-value=0.053  Score=40.40  Aligned_cols=69  Identities=17%  Similarity=0.134  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASR   78 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R   78 (223)
                      -+.-...++.+|+.++.+|+..|..+++..+..++.++......-.+....+++..+..+++.......
T Consensus        11 aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia   79 (103)
T PRK08404         11 AEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIE   79 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677778888888888888877777777777766665555555555555555554444443333

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=96.92  E-value=0.021  Score=49.75  Aligned_cols=31  Identities=32%  Similarity=0.531  Sum_probs=27.7

Q ss_pred             CCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (223)
Q Consensus       184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~  216 (223)
                      ++++|||++..  |.-++|+|+.+||+.+...+
T Consensus       239 psLIGGivI~v--Gd~viD~Sv~~rL~~L~~~L  269 (271)
T PRK13430        239 PSVLGGMRVQV--GDEVIDGSVAGRLERLRRRL  269 (271)
T ss_pred             ccccCcEEEEE--CCEEEehhHHHHHHHHHHHh
Confidence            48999999998  88899999999999887764

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=96.92  E-value=0.095  Score=43.18  Aligned_cols=129  Identities=16%  Similarity=0.210  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 027450            4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK--------IEYSMQLN   75 (223)
Q Consensus         4 ~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~--------~~~S~~~~   75 (223)
                      .++-++.+.-.+.|+.+|+.+|++|..+|.++++.+...+++.++..+..+..+....+..+.+        ..++....
T Consensus         9 ~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~   88 (198)
T PRK03963          9 QEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLE   88 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667788999999999999999999999999888899998887776555544433333222        22333444


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHh----hccChhHHHHHHHHHHHHHHHhcCCCcEEEEec
Q 027450           76 ASRIKVLQ----AQDDLVSNMMEAASKEVLN----VSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCR  135 (223)
Q Consensus        76 ~~R~~~L~----ar~~~i~~v~~~a~e~L~~----~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~  135 (223)
                      ..+.++.+    .-..++..++.++...|..    +...+.+. .++..++......++  .+.+.+.
T Consensus        89 ~a~~~l~~~~~~~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~-~~~~~~~~~~~~~~~--~~~i~~~  153 (198)
T PRK03963         89 AVRERLAELPEDEYFETLKALTKEAVEELGEDKVVVRSNERTL-KLIDSRLEEIRDELG--DVEIELG  153 (198)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCcEEEEEccccH-HHHHHHHHHHHHHhC--CeEEEEC
Confidence            44433322    1345666677766666642    22222122 466665555544443  4455544

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=96.90  E-value=0.1  Score=42.30  Aligned_cols=96  Identities=8%  Similarity=0.112  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM   92 (223)
Q Consensus        13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v   92 (223)
                      -....+.+|+.++.+|...|..+++..+..++.++...+....+.....++.+           .....-..+.++++-+
T Consensus        75 ~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e-----------~~~a~~~l~~qi~~la  143 (174)
T PRK07352         75 EAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAE-----------QERVIAQLRREAAELA  143 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence            44556788888888888888888887777777666555544333332222222           2223344567788888


Q ss_pred             HHHHHHHHHhhccChhHHHHHHHHHHHH
Q 027450           93 MEAASKEVLNVSRDHNSYKKLLKGLIVQ  120 (223)
Q Consensus        93 ~~~a~e~L~~~~~~~~~Y~~~L~~Li~e  120 (223)
                      +..|...|..-..+. ....++...|.+
T Consensus       144 ~~~A~kil~~~l~~~-~~~~li~~~i~~  170 (174)
T PRK07352        144 IAKAESQLPGRLDED-AQQRLIDRSIAN  170 (174)
T ss_pred             HHHHHHHHHhHcCHH-HHHHHHHHHHHh
Confidence            888888887654332 455555555543

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=96.85  E-value=0.1  Score=43.64  Aligned_cols=99  Identities=19%  Similarity=0.123  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i   89 (223)
                      +..-.+..+++|+.+|.+|...|.++++..+..++.++..++....+....+++.++           +...-..+.++.
T Consensus       101 ~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek-----------~~a~~~Lk~ei~  169 (205)
T PRK06231        101 LLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKER-----------RELKEQLQKESV  169 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            334456677888888888888888888877777766655554433333322222222           212334456666


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 027450           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ  120 (223)
Q Consensus        90 ~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~e  120 (223)
                      +-...-|..-|..-.. ++....++.+.|.+
T Consensus       170 ~lAv~iA~kiL~k~ld-~~~~~~lI~~~i~~  199 (205)
T PRK06231        170 ELAMLAAEELIKKKVD-REDDDKLVDEFIRE  199 (205)
T ss_pred             HHHHHHHHHHHHhhCC-HHHHHHHHHHHHHH
Confidence            6666666666655433 22566666666544

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=96.79  E-value=0.085  Score=43.18  Aligned_cols=56  Identities=25%  Similarity=0.245  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027450            4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKE   59 (223)
Q Consensus         4 ~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~   59 (223)
                      +++.++-++-.+.|+.+|+.++++|..+|+++++..+..+..++.........+..
T Consensus         8 ~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~   63 (188)
T PRK02292          8 EDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQEL   63 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777888999999999999999999999996666665555554444433333

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=96.78  E-value=0.022  Score=53.02  Aligned_cols=31  Identities=32%  Similarity=0.475  Sum_probs=27.3

Q ss_pred             CCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (223)
Q Consensus       184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~  216 (223)
                      ++++|||++..  |..++|.|+.+||+.+...+
T Consensus       413 psLiGGivI~v--Gd~viD~Sv~~rL~~l~~~l  443 (445)
T PRK13428        413 PELLGGLSIAV--GDEVIDGTLSSRLAAAEAQL  443 (445)
T ss_pred             chhhCceEEEE--CCEEeehhHHHHHHHHHhhC
Confidence            48999999998  88999999999999876543

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=96.78  E-value=0.15  Score=41.77  Aligned_cols=98  Identities=16%  Similarity=0.175  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN   91 (223)
Q Consensus        12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~   91 (223)
                      .-....+.+|+.++.+|+..|..+++..+..++.++...+....+.....++.++           ....-..+.++.+-
T Consensus        79 ~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek-----------~~a~~~l~~ei~~l  147 (184)
T CHL00019         79 EKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQ-----------QRAINQVRQQVFQL  147 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            3445678888888899999998888877777877766655544433322222222           22334456777777


Q ss_pred             HHHHHHHHHHhhccChhHHHHHHHHHHHHH
Q 027450           92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQS  121 (223)
Q Consensus        92 v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea  121 (223)
                      ++..|..-|...... +....++...|.+.
T Consensus       148 av~~A~kil~~~ld~-~~~~~lid~~i~~l  176 (184)
T CHL00019        148 ALQRALGTLNSCLNN-ELHLRTINANIGLL  176 (184)
T ss_pred             HHHHHHHHHHhHcCH-HHHHHHHHHHHHHH
Confidence            888888777775532 24555555555443

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=96.74  E-value=0.26  Score=40.90  Aligned_cols=57  Identities=25%  Similarity=0.221  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR   65 (223)
Q Consensus         5 ~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~   65 (223)
                      +.-.+-++-.+.|+.+|+++|++|..+|+++++    .|+..+...+.....+....+...
T Consensus        15 ~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe----~i~~kAe~ea~~~~~~~~saa~l~   71 (198)
T PRK01558         15 DGLEEAERLANEIILEAKEEAEEIIAKAEEEAK----ELKAKAEKEANDYKRHALEASRQA   71 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556778899999999999999999999988    777777766663333334344433

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=96.72  E-value=0.17  Score=40.53  Aligned_cols=99  Identities=11%  Similarity=0.125  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i   89 (223)
                      +..-....+.+|+.+|.+|...|..+++..+..++.++..++....+....+++.++..           .+-..+.++.
T Consensus        61 ~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~-----------a~~~L~~~i~  129 (164)
T PRK14473         61 AKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQR-----------MLSELKSQIA  129 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence            44455677788888888888888888887777777776666554444333333332221           2233345666


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 027450           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ  120 (223)
Q Consensus        90 ~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~e  120 (223)
                      +-.+.-|..-|..-. +++.+..++...|.+
T Consensus       130 ~la~~~a~kil~~~l-~~~~~~~li~~~i~~  159 (164)
T PRK14473        130 DLVTLTASRVLGAEL-QARGHDALIAESLAA  159 (164)
T ss_pred             HHHHHHHHHHHHhHc-CHHHHHHHHHHHHHh
Confidence            666666665554432 323455555555543

>PRK13434 F0F1 ATP synthase subunit delta; Provisional

Probab=96.72  E-value=0.029  Score=45.96  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=28.5

Q ss_pred             CCccCceEEEecCCcEEEeccHHHHHHHHHhcCc
Q 027450          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  217 (223)
Q Consensus       184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~l  217 (223)
                      ++++|||++..  |.-++|.|+.+||+.+...+.
T Consensus       143 psLIGG~ii~i--gd~viD~Svk~~L~~l~~~l~  174 (184)
T PRK13434        143 KNLLGGFVVQF--NDLKIEKSIASQLGEIKKAML  174 (184)
T ss_pred             hHHcCceEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence            48999999998  888899999999999887763

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=96.65  E-value=0.096  Score=43.06  Aligned_cols=63  Identities=11%  Similarity=0.138  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450            4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRK   66 (223)
Q Consensus         4 ~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~   66 (223)
                      .++.+..+.-+..|+.+|+.+|++|..+|+++++..+..+.......+....++....+.+..
T Consensus         8 ~~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~   70 (185)
T PRK01194          8 KDIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEA   70 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            356677888899999999999999999999999988888888887777777776666555543

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=96.65  E-value=0.22  Score=39.70  Aligned_cols=97  Identities=13%  Similarity=0.121  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS   90 (223)
Q Consensus        11 ~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~   90 (223)
                      ..-....+.+|+.++.+|..+|+.+++..+..++.++...+....+.....++.++.           ..+-..+.++.+
T Consensus        59 ~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~-----------~a~~~l~~ei~~  127 (159)
T PRK13461         59 KLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKE-----------KAEYEIKNQAVD  127 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            334566778888888888888888888777777777666555443333222222221           122334566666


Q ss_pred             HHHHHHHHHHHhhccChhHHHHHHHHHHH
Q 027450           91 NMMEAASKEVLNVSRDHNSYKKLLKGLIV  119 (223)
Q Consensus        91 ~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~  119 (223)
                      -.+.-|..-|...... +....++...|.
T Consensus       128 lA~~~a~kil~~~~~~-~~~~~li~~~i~  155 (159)
T PRK13461        128 LAVLLSSKALEESIDE-SEHRRLIKDFIS  155 (159)
T ss_pred             HHHHHHHHHHHhHcCH-HHHHHHHHHHHh
Confidence            6666666666554432 245555555443

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=96.58  E-value=0.24  Score=40.08  Aligned_cols=97  Identities=20%  Similarity=0.263  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN   91 (223)
Q Consensus        12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~   91 (223)
                      .-....+.+|+.++.+|...|..+++..+..++.++...+....+....+++.+++    .       .+-..+.++.+-
T Consensus        71 ~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~----~-------a~~el~~ei~~l  139 (173)
T PRK13460         71 KDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKG----K-------ALSQLQNQIVEM  139 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-------HHHHHHHHHHHH
Confidence            34556678888888888888888888777777666655554433333222222221    1       223344667777


Q ss_pred             HHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 027450           92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQ  120 (223)
Q Consensus        92 v~~~a~e~L~~~~~~~~~Y~~~L~~Li~e  120 (223)
                      .+.-|..-|.+.... +....++...|.+
T Consensus       140 A~~~a~kil~~~l~~-~~~~~lid~~i~~  167 (173)
T PRK13460        140 TITIASKVLEKQLKK-EDYKAFIETELAK  167 (173)
T ss_pred             HHHHHHHHHHHHCCH-HHHHHHHHHHHHH
Confidence            777777766665433 2455555555544

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=96.44  E-value=0.33  Score=38.32  Aligned_cols=97  Identities=13%  Similarity=0.062  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i   89 (223)
                      +..-....+.+|+.++.+|+..|..+++..+..++.++...+....+.....+..++           ....-..+.++.
T Consensus        57 ~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~-----------~~a~~~l~~~~~  125 (156)
T PRK05759         57 AQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQER-----------KRAREELRKQVA  125 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            344556677888888888888888888866666666655554433333222222211           112234456666


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHH
Q 027450           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLI  118 (223)
Q Consensus        90 ~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li  118 (223)
                      +-++.-|..-|...... +....++...|
T Consensus       126 ~lA~~~a~k~l~~~~d~-~~~~~~i~~~i  153 (156)
T PRK05759        126 DLAVAGAEKILGRELDA-AAQSDLIDKLI  153 (156)
T ss_pred             HHHHHHHHHHHHhHcCH-HHHHHHHHHHH
Confidence            66666666666654432 23445555444

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=96.41  E-value=0.36  Score=39.13  Aligned_cols=95  Identities=14%  Similarity=0.182  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM   92 (223)
Q Consensus        13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v   92 (223)
                      -....+.+|+.+|.+|...|+.+++..+..++.++...+....+....+++.+           .....-..+.++.+-.
T Consensus        74 e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e-----------~~~a~~~l~~~i~~lA  142 (175)
T PRK14472         74 KNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQE-----------KRRALDVLRNEVADLA  142 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence            34566677777778888888877776666665555444433322222222211           1112233445566666


Q ss_pred             HHHHHHHHHhhccChhHHHHHHHHHHH
Q 027450           93 MEAASKEVLNVSRDHNSYKKLLKGLIV  119 (223)
Q Consensus        93 ~~~a~e~L~~~~~~~~~Y~~~L~~Li~  119 (223)
                      +..|.+-|...... +....++...|.
T Consensus       143 ~~~a~kil~~~l~~-~~~~~li~~~i~  168 (175)
T PRK14472        143 VKGAEKIIRTSLDA-DKQKKVVDSMIQ  168 (175)
T ss_pred             HHHHHHHHHHHCCH-HHHHHHHHHHHH
Confidence            66666555554322 234444444443

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=96.31  E-value=0.42  Score=38.23  Aligned_cols=100  Identities=15%  Similarity=0.124  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i   89 (223)
                      +..-....+.+|+.++.+|...|+++++..+..++.++...+....+....+++.++           ....-..+.++.
T Consensus        61 ~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek-----------~~a~~~l~~~i~  129 (164)
T PRK14471         61 LQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEK-----------NAAMAEIKNQVA  129 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            333445566777777777777777777744444444443333322222211111111           112233445666


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 027450           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ  120 (223)
Q Consensus        90 ~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~e  120 (223)
                      +-++.-|..-|..-..+++....++...|.+
T Consensus       130 ~la~~~a~kil~~~l~~~~~~~~lid~~i~~  160 (164)
T PRK14471        130 NLSVEIAEKVLRKELSNKEKQHKLVEKMLGD  160 (164)
T ss_pred             HHHHHHHHHHHHHHcCcHhHHHHHHHHHHHh
Confidence            6666666666655222211345555554443

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=96.30  E-value=0.31  Score=36.57  Aligned_cols=44  Identities=30%  Similarity=0.314  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027450           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY   55 (223)
Q Consensus        12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~   55 (223)
                      .-...|..+|+.+|.+|..+|+.++...+..+++.+...+..+-
T Consensus        28 Ee~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea   71 (108)
T COG2811          28 EEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEA   71 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556666666666666666666555555555544444333

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.28  E-value=0.3  Score=39.73  Aligned_cols=26  Identities=15%  Similarity=0.308  Sum_probs=13.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027450           28 ISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (223)
Q Consensus        28 I~~~A~~ea~~ek~~i~~~~k~~i~~~~~~   57 (223)
                      |..+|+++++    .|+.++.......+..
T Consensus         2 I~~eA~~ka~----~I~~eA~~e~~~i~~~   27 (198)
T PF01991_consen    2 IEEEAQEKAE----EIIAEAQEEAEKILEE   27 (198)
T ss_dssp             HHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            5556666655    5555554444443333

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=96.20  E-value=0.47  Score=37.72  Aligned_cols=96  Identities=25%  Similarity=0.270  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (223)
Q Consensus        14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~   93 (223)
                      ...-+.+|+.++.+|...|..+++    .++++...+.....++....++..-       .......+-..|.++.+-.+
T Consensus        59 ~e~~L~~A~~ea~~ii~~A~~~a~----~~~~~a~~~a~~~~~~~~~~a~~~I-------~~ek~~a~~el~~~~~~lA~  127 (159)
T PRK09173         59 YQRKRKEAEKEAADIVAAAEREAE----ALTAEAKRKTEEYVARRNKLAEQKI-------AQAETDAINAVRSSAVDLAI  127 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            334555566666666666666555    4444433333333322221111111       11111122333455555555


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHH
Q 027450           94 EAASKEVLNVSRDHNSYKKLLKGLIVQS  121 (223)
Q Consensus        94 ~~a~e~L~~~~~~~~~Y~~~L~~Li~ea  121 (223)
                      .-|..-|..-. +++....++...|.+.
T Consensus       128 ~~A~kil~~~l-~~~~~~~li~~~i~~~  154 (159)
T PRK09173        128 AAAEKLLAEKV-DAKAASELFKDALAQV  154 (159)
T ss_pred             HHHHHHHHhhc-CHHHHHHHHHHHHHHH
Confidence            55555554433 2224556666555543

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=96.05  E-value=0.62  Score=37.72  Aligned_cols=43  Identities=12%  Similarity=0.101  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027450           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY   55 (223)
Q Consensus        13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~   55 (223)
                      -....+.+|+.++.+|..+|+.+++..+..++.++...+....
T Consensus        74 e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~  116 (173)
T PRK13453         74 ENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMI  116 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777788888877777666666666555544433

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=96.02  E-value=0.48  Score=44.21  Aligned_cols=96  Identities=15%  Similarity=0.079  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (223)
Q Consensus        14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~   93 (223)
                      ....+.+|+.++.+|..+|+++++..+..++.++..++....+....+++.+++.           .+-..|.++.+-++
T Consensus        58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~-----------a~~elr~ei~~lAv  126 (445)
T PRK13428         58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQ-----------LTRQLRLELGHESV  126 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            4457778888888888888888886666666665555444333333333332221           22333456666666


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHH
Q 027450           94 EAASKEVLNVSRDHNSYKKLLKGLIVQ  120 (223)
Q Consensus        94 ~~a~e~L~~~~~~~~~Y~~~L~~Li~e  120 (223)
                      ..|.+-|.+-..+++....++...|.+
T Consensus       127 ~~A~kil~~~l~d~~~~~~lId~~i~~  153 (445)
T PRK13428        127 RQAGELVRNHVADPAQQSATVDRFLDE  153 (445)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            666666654222221334555555533

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=95.92  E-value=0.69  Score=37.20  Aligned_cols=96  Identities=19%  Similarity=0.175  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM   92 (223)
Q Consensus        13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v   92 (223)
                      -....+.+|+.++.+|..+|..+++..+..++..+...+.    +....++..       ........+-..|.++.+-+
T Consensus        66 ~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~----~~~~~A~~~-------I~~e~~~a~~el~~e~~~lA  134 (167)
T PRK14475         66 DVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIK----RRAEMAERK-------IAQAEAQAAADVKAAAVDLA  134 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            3444556666666666666666666444444433322222    221111111       11111112233445666666


Q ss_pred             HHHHHHHHHh-hccChhHHHHHHHHHHHHH
Q 027450           93 MEAASKEVLN-VSRDHNSYKKLLKGLIVQS  121 (223)
Q Consensus        93 ~~~a~e~L~~-~~~~~~~Y~~~L~~Li~ea  121 (223)
                      +..|.+-|.. +..  +....++...|.+.
T Consensus       135 v~~A~kil~~~l~~--~~~~~lid~~i~~~  162 (167)
T PRK14475        135 AQAAETVLAARLAG--AKSDPLVDAAIGQM  162 (167)
T ss_pred             HHHHHHHHHhHcCH--HHHHHHHHHHHHHH
Confidence            6666666633 322  24556666665443

>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

Probab=95.92  E-value=0.063  Score=43.94  Aligned_cols=111  Identities=14%  Similarity=0.236  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHH-HHHHh----hccChhHHHHHHHHHHHHHHHhcCC--C--cEEEEecccchHHHHHHHHHHHHHHH
Q 027450           84 AQDDLVSNMMEAAS-KEVLN----VSRDHNSYKKLLKGLIVQSLLRLKE--P--AVLLRCRKDDHHLVESVLESAKEEYA  154 (223)
Q Consensus        84 ar~~~i~~v~~~a~-e~L~~----~~~~~~~Y~~~L~~Li~ea~~~l~~--~--e~~v~~~~~D~~lv~~~~~~~~~~~~  154 (223)
                      .|.+++..++...- .-+.+    +..+  .+-.+|...+.+......+  +  .+.|+..   .++-+.-+..+...+.
T Consensus        58 ~k~~li~~i~~~~~~~~~~nfL~ll~en--~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA---~~Ls~~q~~~l~~~l~  132 (178)
T COG0712          58 DKKELLISIFKKIGDPLLQNFLRLLAEN--KRLNLLPEILEEFLKLAAESRGIVEAEVTSA---FELSDEQLTKLEAKLE  132 (178)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHc--cchhhHHHHHHHHHHHHHHhcCceEEEEEEc---CCCCHHHHHHHHHHHH
Confidence            45666776766655 33333    2223  4555555555554432221  2  2333221   2233333333334444


Q ss_pred             HhhCCCCCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450          155 QKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (223)
Q Consensus       155 ~~~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~  216 (223)
                      ...|+ .+++...-              |++++||+++..  |.-++|.|+.++|..+...+
T Consensus       133 k~~~~-~v~i~~~V--------------D~sliGG~iI~v--gd~viD~Svr~~L~~l~~~l  177 (178)
T COG0712         133 KKFGK-KVKLNNKI--------------DPSLIGGLIIKV--GDEVIDGSVRGKLKRLAKAL  177 (178)
T ss_pred             HHhCC-CceEEeee--------------CHHHhCceEEEE--CCEEEechHHHHHHHHHHhc
Confidence            44443 33433321              248999999998  88899999999999876543

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=95.90  E-value=0.61  Score=36.43  Aligned_cols=43  Identities=19%  Similarity=0.143  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~   52 (223)
                      +..-....+.+|+.+|.+|...|..+++..+..++.+....+.
T Consensus        48 ~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~   90 (147)
T TIGR01144        48 AQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREERE   90 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566777788888888888888877666666555544443

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=95.87  E-value=0.36  Score=34.49  Aligned_cols=36  Identities=22%  Similarity=0.107  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 027450           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA   46 (223)
Q Consensus        11 ~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~   46 (223)
                      +.-...++.+|+.++.+|+..|..+++..+..++.+
T Consensus         8 e~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~   43 (85)
T TIGR02926         8 EEDAEELIEEAEEERKQRIAEAREEARELLEEAEEE   43 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455666666666666666666666333333333

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK13441 F0F1 ATP synthase subunit delta; Provisional

Probab=95.72  E-value=0.18  Score=41.10  Aligned_cols=32  Identities=28%  Similarity=0.260  Sum_probs=28.3

Q ss_pred             CCccCceEEEecCCcEEEeccHHHHHHHHHhcCc
Q 027450          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  217 (223)
Q Consensus       184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~l  217 (223)
                      ++++|||++..  |.-++|.|+.++|..+...++
T Consensus       146 ~sliGG~~i~i--g~~~~D~Sik~~L~~l~~~l~  177 (180)
T PRK13441        146 ESLIAGAVVEF--EGKRLDVTVQGRLKKIAREVL  177 (180)
T ss_pred             hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHh
Confidence            37899999998  778899999999999888775

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=95.72  E-value=0.74  Score=36.81  Aligned_cols=28  Identities=7%  Similarity=0.012  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFN   37 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~   37 (223)
                      +..-....+.+|+.+|.+|..+|+++++
T Consensus        57 l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~   84 (154)
T PRK06568         57 LFEQTNAQIKKLETLRSQMIEESNEVTK   84 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556667777777777777777766

>PRK09098 type III secretion system protein HrpB; Validated

Probab=95.69  E-value=0.95  Score=38.60  Aligned_cols=51  Identities=20%  Similarity=0.111  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027450            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY   55 (223)
Q Consensus         5 ~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~   55 (223)
                      ++-.+..+..+.|+.+|+++|++|..+|+++|+..+.+=.+++..+...++
T Consensus        43 ~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~   93 (233)
T PRK09098         43 AVLAAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEW   93 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566777889999999999999999999998666555555555444444

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=95.61  E-value=1  Score=36.79  Aligned_cols=94  Identities=19%  Similarity=0.179  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (223)
Q Consensus        16 ~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~~~   95 (223)
                      .-+.+|+.++.+|+..|..+++..+..++.+....+....+....+++.+           ....+-..|.++.+-.+..
T Consensus        86 ~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~e-----------k~~a~~~l~~~i~~lA~~~  154 (184)
T PRK13455         86 RKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASA-----------EAAAVKAVRDRAVSVAVAA  154 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666554444443333332222211111111111           1112223445566666666


Q ss_pred             HHHHHHhhccChhHHHHHHHHHHHHH
Q 027450           96 ASKEVLNVSRDHNSYKKLLKGLIVQS  121 (223)
Q Consensus        96 a~e~L~~~~~~~~~Y~~~L~~Li~ea  121 (223)
                      |..-|..-. ++.....++...|.+.
T Consensus       155 a~kil~~~l-~~~~~~~lid~~i~~l  179 (184)
T PRK13455        155 AADVIAKQM-TAADANALIDEAIKEV  179 (184)
T ss_pred             HHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence            665554433 2224555555555443

>PRK15322 invasion protein OrgB; Provisional

Probab=95.46  E-value=1.3  Score=36.95  Aligned_cols=106  Identities=15%  Similarity=0.055  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN   91 (223)
Q Consensus        12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~   91 (223)
                      .-...+.++|+.+|.+|..+|+++++    .|...+   -.+.|...+.++-..-.        .-+...-..+.++..+
T Consensus        12 ~~a~~l~~qA~~kA~~ii~qA~~eaE----~ir~~A---~~~GYq~Gl~qa~~~la--------~~~a~~~~l~~~l~~~   76 (210)
T PRK15322         12 FSAERLEQQARRRAKRILRQAEEEAE----TLRMYA---YQEGYEQGMIDALQQVA--------AYLTDNQTMAWKWMEK   76 (210)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence            34567899999999999999999998    665443   23557666555433211        1111111222366666


Q ss_pred             HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC--CcEEEEecc
Q 027450           92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE--PAVLLRCRK  136 (223)
Q Consensus        92 v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~--~e~~v~~~~  136 (223)
                      |-+.++.-|.....+|    ++|-.++.+=+..++.  ..+.|++-+
T Consensus        77 ie~~~r~lls~~Ld~p----d~LL~~le~Wl~~l~~~~~pL~l~lP~  119 (210)
T PRK15322         77 IQIYARELFSAAVDHP----ETLLTVLDEWLRDFDKPEGQLFLTLPV  119 (210)
T ss_pred             HHHHHHHHHHHHccCH----HHHHHHHHHHHHhCccccCceeEecCh
Confidence            7677776666666554    4666666654443333  356666644

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=95.32  E-value=1.2  Score=35.75  Aligned_cols=49  Identities=31%  Similarity=0.295  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE   63 (223)
Q Consensus        11 ~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e   63 (223)
                      ..-...-+.+|+.++.+|...|..+++    .+.++.+.+.+.+.++....+.
T Consensus        60 ~~~~~~~l~~Ar~~a~~Ii~~A~~~a~----~~~~e~~~~a~~e~~r~~~~a~  108 (161)
T COG0711          60 LAEYEQELEEAREQASEIIEQAKKEAE----QIAEEIKAEAEEELERIKEAAE  108 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            344456677788888888888888887    4444444444444444443333

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=95.25  E-value=0.72  Score=32.89  Aligned_cols=44  Identities=30%  Similarity=0.352  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRK   66 (223)
Q Consensus        19 ~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~   66 (223)
                      .+|+.+++++...|+.++.    .|+..++......++.....++...
T Consensus         5 k~ae~~~~~~l~~A~~ea~----~Ii~~A~~~A~~~~~~a~~~A~~ea   48 (85)
T TIGR02926         5 KKAEEDAEELIEEAEEERK----QRIAEAREEARELLEEAEEEASKLG   48 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666655    5666655555555555444444433

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK15354 type III secretion system protein SsaK; Provisional

Probab=95.19  E-value=1.6  Score=36.53  Aligned_cols=121  Identities=15%  Similarity=0.153  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (223)
Q Consensus        14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~   93 (223)
                      ..-|++.|..+|.+|.-.|..+-.    .++.+.......-...-..+.        -....+..-.-|-...++...+.
T Consensus        43 s~~il~~A~rkA~~I~q~A~~~~~----~ll~qaqqqad~L~~~~~~~~--------E~~~L~qHV~wLve~e~lE~sLV  110 (224)
T PRK15354         43 SHAIVSSAYRKAEKIIRDAYRYQR----EQKVEQQQELACLRKNTLEKM--------EVEWLEQHVKHLQEDENQFRSLV  110 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHHH
Confidence            457889999999999888877633    444443322211111111111        11222222233444444444444


Q ss_pred             HHHHHHHHh--------hccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHH
Q 027450           94 EAASKEVLN--------VSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL  146 (223)
Q Consensus        94 ~~a~e~L~~--------~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~  146 (223)
                      ..+++++..        -.+..+-=.-+...|-.++.....++.++++|.|.+.+.+...+
T Consensus       111 ~~~~~~I~~aI~~VltaW~gQQ~isq~Li~RLa~Qv~~mA~eg~LtL~VHP~~~~am~~af  171 (224)
T PRK15354        111 DHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIHPEKEALMRETF  171 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCceEEEECHHHHHHHHHHH
Confidence            444444433        11221133556778888888888888999999999988776533

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=95.17  E-value=0.96  Score=33.93  Aligned_cols=41  Identities=22%  Similarity=0.238  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 027450           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK   58 (223)
Q Consensus        14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~   58 (223)
                      .+....+|++.++.+...|++++.    .|+.+...+....++..
T Consensus        19 ad~~IeeAkEe~~~~i~eAr~ear----eiieeaE~eA~~~~~e~   59 (108)
T COG2811          19 ADEEIEEAKEEAEQIIKEAREEAR----EIIEEAEEEAEKLAQEI   59 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            445556666666666666666665    66666555555444433

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=95.09  E-value=1.1  Score=37.49  Aligned_cols=34  Identities=21%  Similarity=0.067  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 027450           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA   46 (223)
Q Consensus        13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~   46 (223)
                      -.+..+.+|+.++.+|...|+.+++.+...++.+
T Consensus       109 ~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~  142 (204)
T PRK09174        109 AYEQELAQARAKAHSIAQAAREAAKAKAEAERAA  142 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666666665444444433

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=95.04  E-value=1.5  Score=36.34  Aligned_cols=116  Identities=16%  Similarity=0.204  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE   99 (223)
Q Consensus        20 eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~~~a~e~   99 (223)
                      .++...+.|...|+++++    .|..++........++.    ....+..+.......+.+.-..++.++..+..+++..
T Consensus         3 ~~e~~i~~I~~~a~eeak----~I~~eA~~eae~i~~ea----~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~   74 (194)
T COG1390           3 ELEKLIKKILREAEEEAE----EILEEAREEAEKIKEEA----KREAEEAIEEILRKAEKEAERERQRIISSALLEARRK   74 (194)
T ss_pred             cHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677788888888776    77666554443332222    2222222223334444455566677777766666655


Q ss_pred             HHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHH
Q 027450          100 VLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA  154 (223)
Q Consensus       100 L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~  154 (223)
                      +..      .++.+|...+...-..+.     -.-++.+...+..++.++...|.
T Consensus        75 ~Le------~~ee~l~~~~~~~~e~L~-----~i~~~~~~~~l~~ll~~~~~~~~  118 (194)
T COG1390          75 LLE------AKEEILESVFEAVEEKLR-----NIASDPEYESLQELLIEALEKLL  118 (194)
T ss_pred             HHH------HHHHHHHHHHHHHHHHHH-----cCcCCcchHHHHHHHHHHHHhcC
Confidence            544      356666664444443331     22234455556666665555554

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=94.98  E-value=0.72  Score=35.71  Aligned_cols=42  Identities=12%  Similarity=0.079  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027450           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ   53 (223)
Q Consensus        12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~   53 (223)
                      .-.+..+.+|+.++.+|...|..+++.++..++.++...+..
T Consensus        60 ~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~  101 (140)
T PRK07353         60 AQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQA  101 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677777777777777777776666666655544443

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=94.86  E-value=0.93  Score=36.53  Aligned_cols=36  Identities=25%  Similarity=0.145  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           26 NEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR   65 (223)
Q Consensus        26 ~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~   65 (223)
                      +++..+|+.++.    .|+++++.......+....++...
T Consensus        80 e~~L~~Ar~eA~----~Ii~~A~~eAe~~~~~ii~~A~~e  115 (167)
T PRK08475         80 LKKLEEAKEKAE----LIVETAKKEAYILTQKIEKQTKDD  115 (167)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444    666666555555554444444433

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=94.85  E-value=1.5  Score=34.89  Aligned_cols=46  Identities=11%  Similarity=-0.010  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY   55 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~   55 (223)
                      +..-....+.+|+.+|.+|...|.++++..+..++.++...+....
T Consensus        75 ~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~  120 (156)
T CHL00118         75 LTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLL  120 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556677777777777777777777666666555554444333

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=94.79  E-value=2.1  Score=35.77  Aligned_cols=23  Identities=13%  Similarity=0.153  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERKEKQVEI   64 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~~~~~e~   64 (223)
                      .|+.++.......++....++..
T Consensus       118 ~Ii~~A~~eAe~~~e~i~~~A~~  140 (205)
T PRK06231        118 EIIDQANYEALQLKSELEKEANR  140 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555554444444443333

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=94.72  E-value=1.7  Score=34.50  Aligned_cols=37  Identities=19%  Similarity=0.135  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 027450           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKI   51 (223)
Q Consensus        15 ~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i   51 (223)
                      +.|..+|+..++.+..+|..+++.+..++...+...+
T Consensus        71 ~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I  107 (159)
T PRK09173         71 ADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKI  107 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444433444443333333

>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit

Probab=94.71  E-value=0.48  Score=38.15  Aligned_cols=30  Identities=23%  Similarity=0.443  Sum_probs=25.8

Q ss_pred             CCccCceEEEecCCcEEEeccHHHHHHHHHhc
Q 027450          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRK  215 (223)
Q Consensus       184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~  215 (223)
                      ++.+||+++..  |.-.+|.|+.++|+.+...
T Consensus       142 ~~ligGi~i~~--~~~~iD~Si~~~L~~l~~~  171 (172)
T TIGR01145       142 KDLIGGVIIRI--GDRVIDGSVRGQLKRLSRQ  171 (172)
T ss_pred             HHHhCceEEEE--CCEEEehhHHHHHHHHHhh
Confidence            37899999998  7788999999999887654

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=94.63  E-value=1.8  Score=34.48  Aligned_cols=23  Identities=13%  Similarity=0.170  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERKEKQVEI   64 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~~~~~e~   64 (223)
                      .|+++++......++....++..
T Consensus        78 ~ii~~A~~~a~~~~~~~l~~A~~  100 (164)
T PRK14473         78 KIVAQAQERARAQEAEIIAQARR  100 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666655555555544444443

>PRK00106 hypothetical protein; Provisional

Probab=94.48  E-value=3  Score=39.87  Aligned_cols=35  Identities=26%  Similarity=0.221  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027450           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAE   47 (223)
Q Consensus        13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~   47 (223)
                      -...|+.+|+.+|++|..+|..+++..+..+..+.
T Consensus        43 ~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEa   77 (535)
T PRK00106         43 EAVNLRGKAERDAEHIKKTAKRESKALKKELLLEA   77 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677777777777777777654444444443

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=94.37  E-value=1.1  Score=35.04  Aligned_cols=44  Identities=27%  Similarity=0.345  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027450           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY   55 (223)
Q Consensus        12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~   55 (223)
                      +-...++.+|+.+|..+...|..++..+..++++++...++...
T Consensus        62 ~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~  105 (141)
T PRK08476         62 HEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKY  105 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555555555444433

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=94.29  E-value=1.6  Score=32.28  Aligned_cols=20  Identities=0%  Similarity=0.240  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q 027450           86 DDLVSNMMEAASKEVLNVSR  105 (223)
Q Consensus        86 ~~~i~~v~~~a~e~L~~~~~  105 (223)
                      ......+...+..++..+..
T Consensus        65 ~~~~~~l~~et~~~i~~i~~   84 (105)
T PF03179_consen   65 EQEAEELEKETEEKIEEIKK   84 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555443

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=94.26  E-value=1.6  Score=32.37  Aligned_cols=70  Identities=16%  Similarity=0.139  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA   96 (223)
Q Consensus        19 ~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~~~a   96 (223)
                      .+|+.+++++...|+.++.    .|+.+++......++....++.......+.    .++..+-..+...+.++-.++
T Consensus         9 k~aE~~~e~~L~~A~~Ea~----~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile----~Ak~eie~Ek~~a~~elk~ei   78 (103)
T PRK08404          9 VKAEKEAEERIEKAKEEAK----KIIRKAKEEAKKIEEEIIKKAEEEAQKLIE----KKKKEGEEEAKKILEEGEKEI   78 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            4688888999999998887    888888888888888777776665444333    333344444444444444333

>PRK05758 F0F1 ATP synthase subunit delta; Validated

Probab=94.16  E-value=0.6  Score=37.69  Aligned_cols=31  Identities=26%  Similarity=0.480  Sum_probs=26.9

Q ss_pred             CCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (223)
Q Consensus       184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~  216 (223)
                      ++.+||+++..  |...+|+|+.++|+.....+
T Consensus       145 ~~ligG~~i~~--~~~~~d~Si~~~L~~l~~~l  175 (177)
T PRK05758        145 PSLIGGVIIKV--GDRVIDGSVRGKLERLKDAL  175 (177)
T ss_pred             hHHhCceEEEE--CCEEeehhHHHHHHHHHHHh
Confidence            37899999998  67889999999999887665

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=94.08  E-value=1.3  Score=36.16  Aligned_cols=40  Identities=13%  Similarity=0.094  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK   49 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~   49 (223)
                      +..-.+..+.+|+.++.+|+..|.++++..+..++.+...
T Consensus        84 ~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~  123 (181)
T PRK13454         84 AEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADA  123 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666677777777777766666555555544433

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=93.94  E-value=2.9  Score=34.08  Aligned_cols=22  Identities=18%  Similarity=0.154  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERKEKQVE   63 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~~~~~e   63 (223)
                      .++.+++.......+....++.
T Consensus        94 ~ii~~A~~~ae~~~~~il~~A~  115 (184)
T CHL00019         94 EIRVNGYSEIEREKENLINQAK  115 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4555544444444444433333

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=93.59  E-value=3.2  Score=33.45  Aligned_cols=22  Identities=18%  Similarity=0.117  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERKEKQVE   63 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~~~~~e   63 (223)
                      .|+.+++.......+....+++
T Consensus        89 ~ii~~a~~~a~~~~~~~~~~A~  110 (174)
T PRK07352         89 RIRADAKARAEAIRAEIEKQAI  110 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555444444443333

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=93.51  E-value=3.3  Score=33.25  Aligned_cols=20  Identities=15%  Similarity=0.247  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERKEKQ   61 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~~~~   61 (223)
                      .|+.++.......++....+
T Consensus        80 ~Ii~~A~~~a~~~~~~~~~~   99 (167)
T PRK14475         80 AMLAAAKADARRMEAEAKEK   99 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555554444444433333

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=93.49  E-value=3.4  Score=33.35  Aligned_cols=22  Identities=9%  Similarity=0.092  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERKEKQVE   63 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~~~~~e   63 (223)
                      .|+.+++.......+....++.
T Consensus        86 ~ii~~A~~ea~~~~~~~~~~A~  107 (173)
T PRK13460         86 AIVAEAKSDALKLKNKLLEETN  107 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555554444444433333

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.49  E-value=0.97  Score=34.29  Aligned_cols=41  Identities=29%  Similarity=0.245  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027450           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (223)
Q Consensus        12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~   52 (223)
                      .-.+..+.+|+.++.+|+..|..+++..+..++.+....+.
T Consensus        54 ~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~   94 (132)
T PF00430_consen   54 AEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAE   94 (132)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666666666666555555544444433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>CHL00119 atpD ATP synthase CF1 delta subunit; Validated

Probab=93.33  E-value=1.1  Score=36.55  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=26.6

Q ss_pred             CCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (223)
Q Consensus       184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~  216 (223)
                      ++.+||+++..  |.-.+|+|+.++|+.....+
T Consensus       149 ~~ligGi~i~~--g~~~~D~Si~~~L~~l~~~l  179 (184)
T CHL00119        149 PSLIGGFLIKI--GSKVIDTSIKGQLKQLASHL  179 (184)
T ss_pred             hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHH
Confidence            37899999998  77889999999999877654

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=93.31  E-value=3.6  Score=33.21  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           41 LQLVEAEKKKIRQEYERKEKQVEIR   65 (223)
Q Consensus        41 ~~i~~~~k~~i~~~~~~~~~~~e~~   65 (223)
                      ..|+++++.......+....+++.+
T Consensus        87 ~~ii~~a~~~a~~~~~~~~~~A~~e  111 (173)
T PRK13453         87 QKILEDAKVQARQQQEQIIHEANVR  111 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677777666666665555544443

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=93.31  E-value=5.1  Score=34.87  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=21.5

Q ss_pred             cCceEEEec----CCcEEEec---cHHHHHHHHHhcCchhh
Q 027450          187 SGGVVVASR----DGKIVCEN---TLDARLDVVFRKKLPEV  220 (223)
Q Consensus       187 ~GGvvl~s~----dg~I~vdn---Tle~RL~~~~~~~lp~I  220 (223)
                      .+|+-+...    .|+.+|..   .+|++++..|+.+...+
T Consensus       234 ~~~i~I~~D~~l~~GgcvIet~~G~IDasi~tqLe~l~~~L  274 (281)
T PRK06669        234 EEHLKIYEDDAISKGGCVIETDFGNIDARIDTQLKQLKEKL  274 (281)
T ss_pred             CCCeEEEECCCCCCCCeEEEcCCCeeeccHHHHHHHHHHHH
Confidence            456666654    37777754   56777777777665444

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=93.29  E-value=3.4  Score=32.77  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERKEKQVEIR   65 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~~~~~e~~   65 (223)
                      .|+++++.......+....++..+
T Consensus        75 ~ii~~a~~~a~~~~~~i~~~A~~e   98 (159)
T PRK13461         75 KIVEEYKSKAENVYEEIVKEAHEE   98 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666555555555544444443

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=93.21  E-value=2.5  Score=31.13  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~   57 (223)
                      .++....|..+|+.....++.+|..+|+    ..+...+......|..
T Consensus        12 AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~----~ei~~~r~~~e~~~~~   55 (105)
T PF03179_consen   12 AEKEAQEIVEEARKEREQRLKQAKEEAE----KEIEEFRAEAEEEFKE   55 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            4556667777777777777777777776    3333334444444433

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=93.08  E-value=3.9  Score=32.97  Aligned_cols=20  Identities=5%  Similarity=0.114  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERKEKQ   61 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~~~~   61 (223)
                      .|+.++........+....+
T Consensus        88 ~ii~~A~~~a~~~~~~~~~~  107 (175)
T PRK14472         88 KIIREGKEYAEKLRAEITEK  107 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45554444444433333333

>PRK13429 F0F1 ATP synthase subunit delta; Provisional

Probab=92.99  E-value=2.3  Score=34.38  Aligned_cols=30  Identities=30%  Similarity=0.369  Sum_probs=26.3

Q ss_pred             CccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450          185 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (223)
Q Consensus       185 ~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~  216 (223)
                      +.+||+++..  |.-.+|+|+.++|+.+...+
T Consensus       148 sligG~~i~~--~~~~iD~Si~~~L~~l~~~l  177 (181)
T PRK13429        148 SLIGGVVVKI--GDKVLDASVRTQLRRLKETL  177 (181)
T ss_pred             hhhCceEEEE--CCEEEehhHHHHHHHHHHHH
Confidence            7899999998  66789999999999887654

>PRK08474 F0F1 ATP synthase subunit delta; Validated

Probab=92.64  E-value=0.68  Score=37.55  Aligned_cols=29  Identities=14%  Similarity=0.138  Sum_probs=20.8

Q ss_pred             cCceEEEecCCcEEEeccHHHHHHHHHhcCchh
Q 027450          187 SGGVVVASRDGKIVCENTLDARLDVVFRKKLPE  219 (223)
Q Consensus       187 ~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~  219 (223)
                      +|||++..  |..++|.|+  .|+.+...+...
T Consensus       143 IGG~ii~i--gd~v~D~s~--~l~~~~~~~~~~  171 (176)
T PRK08474        143 YDGIKVEV--DDLGVEVSF--SKDRLKNQLIEY  171 (176)
T ss_pred             CCCEEEEE--CCEEEEeee--eHHHHHHHHHHH
Confidence            99999998  888899954  555555544433

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=92.24  E-value=5.7  Score=32.75  Aligned_cols=29  Identities=21%  Similarity=0.354  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027450           21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ   53 (223)
Q Consensus        21 A~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~   53 (223)
                      +...|.+|...|+++|+    +|+..+..+.+.
T Consensus        28 ~~~~a~~IL~~A~~qA~----~Il~~Ae~eAe~   56 (191)
T PF06188_consen   28 AQQQAREILEDARQQAE----QILQQAEEEAEA   56 (191)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            56778888888888887    888777655443

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.03  E-value=0.046  Score=43.96  Aligned_cols=32  Identities=25%  Similarity=0.522  Sum_probs=11.9

Q ss_pred             CCCCccCceEEEecCCcEEEeccHHHHHHHHHhc
Q 027450          182 HGPSCSGGVVVASRDGKIVCENTLDARLDVVFRK  215 (223)
Q Consensus       182 ~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~  215 (223)
                      .|++++|||++..  |..++|.|+.++|+.+..+
T Consensus       140 vD~sLigG~~i~~--~~~~iD~Sv~~~L~~l~~~  171 (172)
T PF00213_consen  140 VDPSLIGGFIIEV--GDKVIDASVKSRLEQLKKE  171 (172)
T ss_dssp             -------------------TTTTTTTTTTTT-TT
T ss_pred             EccccCcEEEEEE--CCEEEehhHHHHHHHHHhc
Confidence            3468999999998  8888999999999876554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=91.98  E-value=12  Score=35.75  Aligned_cols=34  Identities=24%  Similarity=0.080  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027450           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAE   47 (223)
Q Consensus        14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~   47 (223)
                      ...++.+|+.+|+.|..+|..+++..+..+..+.
T Consensus        23 a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~Ea   56 (514)
T TIGR03319        23 AEKKLGSAEELAKRIIEEAKKEAETLKKEALLEA   56 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666666654444444333

>PRK00106 hypothetical protein; Provisional

Probab=91.71  E-value=13  Score=35.68  Aligned_cols=43  Identities=14%  Similarity=0.138  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHHHHHHH
Q 027450           80 KVLQAQDDLVSNMMEAASKEVLNVSRDH--NSYKKLLKGLIVQSL  122 (223)
Q Consensus        80 ~~L~ar~~~i~~v~~~a~e~L~~~~~~~--~~Y~~~L~~Li~ea~  122 (223)
                      +-+..+..-++.+..+...+|..+..-+  .....+|..+=.++-
T Consensus       139 eeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~~~  183 (535)
T PRK00106        139 KHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKLT  183 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            4455555566666666666665543322  135555555544443

>PRK12704 phosphodiesterase; Provisional

Probab=91.47  E-value=13  Score=35.41  Aligned_cols=28  Identities=32%  Similarity=0.235  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027450           15 RFIRQEAEEKANEISVSAEEEFNIEKLQ   42 (223)
Q Consensus        15 ~~I~~eA~~ka~eI~~~A~~ea~~ek~~   42 (223)
                      ..+..+|+.+|++|..+|+.+++..+..
T Consensus        30 ~~~l~~Ae~eAe~I~keA~~eAke~~ke   57 (520)
T PRK12704         30 EAKIKEAEEEAKRILEEAKKEAEAIKKE   57 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556666666666655555433333

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=91.45  E-value=8.4  Score=33.07  Aligned_cols=50  Identities=6%  Similarity=-0.007  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHh-----hccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecc
Q 027450           86 DDLVSNMMEAASKEVLN-----VSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRK  136 (223)
Q Consensus        86 ~~~i~~v~~~a~e~L~~-----~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~  136 (223)
                      .+.+..++..+...+..     +.-+| .+.+++..........++. ..+.|+..|
T Consensus       158 ~e~i~~lv~~al~~l~~~~~i~I~v~p-~d~~~v~~~~~~l~~~~~~~~~i~i~~D~  213 (255)
T TIGR03825       158 KNAFQALVRQVLSEVREFDEVSIYVHP-HWYERVAAQKDELQSILPACEHLAVYPDE  213 (255)
T ss_pred             HHHHHHHHHHHHHhccCCCcEEEEECH-HHHHHHHHhHHHHHhhcCCCCceEEEeCC
Confidence            45666777777777654     22256 4455555555444444443 345555444

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=90.96  E-value=9.2  Score=32.63  Aligned_cols=15  Identities=0%  Similarity=0.211  Sum_probs=7.3

Q ss_pred             EecccchHHHHHHHH
Q 027450          133 RCRKDDHHLVESVLE  147 (223)
Q Consensus       133 ~~~~~D~~lv~~~~~  147 (223)
                      -+++.....+...+.
T Consensus       186 ~l~~~~~~~i~~~l~  200 (246)
T TIGR03321       186 ELPEEQREQIRDTIR  200 (246)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            334555555554444

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK12704 phosphodiesterase; Provisional

Probab=90.90  E-value=15  Score=35.03  Aligned_cols=42  Identities=14%  Similarity=0.240  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHHHHHH
Q 027450           80 KVLQAQDDLVSNMMEAASKEVLNVSRDH--NSYKKLLKGLIVQS  121 (223)
Q Consensus        80 ~~L~ar~~~i~~v~~~a~e~L~~~~~~~--~~Y~~~L~~Li~ea  121 (223)
                      +-|..+..-++.+..+...+|.++..-+  .....+|..+=.++
T Consensus       124 ~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~  167 (520)
T PRK12704        124 QELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEA  167 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            4455555555566666666665543321  13444555444443

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=90.68  E-value=8  Score=31.43  Aligned_cols=9  Identities=11%  Similarity=0.501  Sum_probs=4.2

Q ss_pred             HHHHHHHHH
Q 027450          140 HLVESVLES  148 (223)
Q Consensus       140 ~lv~~~~~~  148 (223)
                      .++...+.+
T Consensus       170 ~lid~~i~~  178 (184)
T PRK13455        170 ALIDEAIKE  178 (184)
T ss_pred             HHHHHHHHH
Confidence            444554443

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=90.12  E-value=11  Score=32.32  Aligned_cols=25  Identities=0%  Similarity=0.135  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           39 EKLQLVEAEKKKIRQEYERKEKQVE   63 (223)
Q Consensus        39 ek~~i~~~~k~~i~~~~~~~~~~~e   63 (223)
                      +...|+++++.......+..+.++.
T Consensus        72 ea~~ii~~A~~eA~~~~~~il~~A~   96 (250)
T PRK14474         72 QRASFMAQAQEAADEQRQHLLNEAR   96 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555544444444333

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=90.07  E-value=7.5  Score=30.17  Aligned_cols=41  Identities=15%  Similarity=0.170  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           26 NEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEY   70 (223)
Q Consensus        26 ~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~   70 (223)
                      +....+|+.++.    .|+++++.......+....++.......+
T Consensus        53 ~~~l~~A~~ea~----~i~~~a~~~a~~~~~~~~~~a~~e~~~~~   93 (147)
T TIGR01144        53 QVILKEAKDEAQ----EIIENANKRGSEILEEAKAEAREEREKIK   93 (147)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444    77777777776666666555554443333

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=89.99  E-value=7.9  Score=30.32  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERKEKQVE   63 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~~~~~e   63 (223)
                      .|++++.......++....++.
T Consensus        74 ~i~~~a~~ea~~~~~~~~~~a~   95 (156)
T PRK05759         74 EIIEQAKKRAAQIIEEAKAEAE   95 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555544444444433

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=89.94  E-value=8.5  Score=30.60  Aligned_cols=22  Identities=0%  Similarity=0.149  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERKEKQVE   63 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~~~~~e   63 (223)
                      .|+.+++......++....+++
T Consensus        78 ~ii~~A~~~a~~~~~~~~~~A~   99 (164)
T PRK14471         78 AILKEAREIKEKMIADAKEEAQ   99 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555554444444433333

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=88.81  E-value=6.9  Score=29.50  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR   65 (223)
Q Consensus        23 ~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~   65 (223)
                      ..+++....|+.++.    .++.+++......++....+++..
T Consensus        54 ~e~~~~l~~a~~ea~----~i~~~a~~~a~~~~~~~~~ea~~~   92 (132)
T PF00430_consen   54 AEYEEKLAEAREEAQ----EIIEEAKEEAEKEKEEILAEAEKE   92 (132)
T ss_dssp             HHHHHHHHHHHHHHC----HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555666655    777777766666666655554443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=88.45  E-value=13  Score=30.76  Aligned_cols=27  Identities=30%  Similarity=0.215  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027450           16 FIRQEAEEKANEISVSAEEEFNIEKLQ   42 (223)
Q Consensus        16 ~I~~eA~~ka~eI~~~A~~ea~~ek~~   42 (223)
                      .-+..|+.+|..|...|+.+++..+..
T Consensus        27 ~~~~~A~~~A~~i~~~A~~eAe~~~ke   53 (201)
T PF12072_consen   27 KKLEQAEKEAEQILEEAEREAEAIKKE   53 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555566666655555543333

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=88.32  E-value=14  Score=30.85  Aligned_cols=17  Identities=12%  Similarity=0.307  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERK   58 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~   58 (223)
                      .|+++.+.......+..
T Consensus       123 ~Ii~~Ar~ea~~~~e~~  139 (204)
T PRK09174        123 SIAQAAREAAKAKAEAE  139 (204)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444433333

>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]

Probab=88.24  E-value=2.2  Score=35.47  Aligned_cols=29  Identities=28%  Similarity=0.526  Sum_probs=25.2

Q ss_pred             CCccCceEEEecCCcEEEeccHHHHHHHHHh
Q 027450          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFR  214 (223)
Q Consensus       184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~  214 (223)
                      ++++||+||+.  |.-.||-|+.+|++..-.
T Consensus       176 PSI~GGliVei--GdK~vDmSI~tr~q~l~~  204 (210)
T KOG1662|consen  176 PSIIGGLIVEI--GDKYVDMSIKTRLQKLNK  204 (210)
T ss_pred             hhhhcceEEEE--cCeeEeeeHHHHHHHHHH
Confidence            48999999998  777899999999987654

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=88.24  E-value=10  Score=29.19  Aligned_cols=24  Identities=0%  Similarity=0.030  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERKEKQVEIR   65 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~~~~~e~~   65 (223)
                      .|++++........+.....+..+
T Consensus        75 ~i~~~a~~~a~~~~~~~~~~a~~e   98 (140)
T PRK07353         75 AVIAEAEAEADKLAAEALAEAQAE   98 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666655554444433

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=85.73  E-value=16  Score=28.90  Aligned_cols=22  Identities=18%  Similarity=0.219  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERKEKQVE   63 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~~~~~e   63 (223)
                      .|+++++.......+....+++
T Consensus        92 ~ii~~A~~~a~~~~~~~~~~A~  113 (156)
T CHL00118         92 LEITQSQKEAKEIVENELKQAQ  113 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5665555555554444443333

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=83.80  E-value=19  Score=28.09  Aligned_cols=16  Identities=38%  Similarity=0.372  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHh
Q 027450           22 EEKANEISVSAEEEFN   37 (223)
Q Consensus        22 ~~ka~eI~~~A~~ea~   37 (223)
                      ....+++...|+.++.
T Consensus        61 ~~e~e~~l~~Ar~eA~   76 (141)
T PRK08476         61 EHEIETILKNAREEAN   76 (141)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344445555555555

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=82.21  E-value=24  Score=28.17  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           42 QLVEAEKKKIRQEYERKEKQVEIR   65 (223)
Q Consensus        42 ~i~~~~k~~i~~~~~~~~~~~e~~   65 (223)
                      .|++.++...+...+....+++..
T Consensus        76 ~Ii~~A~~~a~~~~~e~~~~a~~e   99 (161)
T COG0711          76 EIIEQAKKEAEQIAEEIKAEAEEE   99 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666655555544444443

>PRK10780 periplasmic chaperone; Provisional

Probab=81.70  E-value=25  Score=28.04  Aligned_cols=53  Identities=11%  Similarity=0.233  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHH
Q 027450           81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLE  147 (223)
Q Consensus        81 ~L~ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~  147 (223)
                      +...++++...++..+.+-+..+.... .|.-+|.            ...++|.+|. .++...++.
T Consensus       110 ~~~~~~e~~~~i~~ki~~ai~~vak~~-gy~~Vld------------~~~v~Y~~~~-~DIT~~Vik  162 (165)
T PRK10780        110 RRRRSNEERNKILTRIQTAVKSVANKQ-GYDLVVD------------ANAVAYNSSD-KDITADVLK  162 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeEEEe------------CCceeeeCCC-CCchHHHHH
Confidence            334556667777777777777776654 5664442            1237888774 666666654

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=80.05  E-value=29  Score=27.77  Aligned_cols=17  Identities=12%  Similarity=0.188  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHhc
Q 027450          109 SYKKLLKGLIVQSLLRL  125 (223)
Q Consensus       109 ~Y~~~L~~Li~ea~~~l  125 (223)
                      .|.+-|..|...-+..+
T Consensus       125 ~~~~~~i~~~~~i~~k~  141 (155)
T PRK06569        125 NKSEAIIKLAVNIIEKI  141 (155)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            47777777766665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
4dl0_J	233	Crystal Structure Of The Heterotrimeric Egchead Per		4e-26
2kz9_A	69	Structure Of E1-69 Of Yeast V-Atpase Length = 69		3e-04

>pdb|4DL0|J Chain J, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 233

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 121/215 (56%), Gaps = 9/215 (4%)
Query: 6   VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65
           V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+  + 
Sbjct: 13  VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLS 72
Query: 66  KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRL 125
           ++I  S   N  R+KVL A++  +  + E   +++  ++ + + YK +L+ LIV++LL+L
Sbjct: 73  QQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKL 132
Query: 126 KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXS 185
            EP  +++  + D  L+ES+ +    EY +K Q  P E IV  + YL             
Sbjct: 133 LEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLNKDL--------- 183
Query: 186 CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220
            SGGVVV++   KI   NTL+ RL ++  + LP +
Sbjct: 184 VSGGVVVSNASDKIEINNTLEERLKLLSEEALPAI 218

>pdb|2KZ9|A Chain A, Structure Of E1-69 Of Yeast V-Atpase Length = 69

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 6  VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62
          V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+ 
Sbjct: 13 VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKA 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	100.0
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	100.0
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	99.96
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	99.89
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	97.45
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	97.41
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	97.06
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	95.36
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	94.05
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	93.84
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	88.99
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	85.63
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	85.22
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	80.44

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=100.00  E-value=1e-48  Score=331.21  Aligned_cols=213  Identities=34%  Similarity=0.542  Sum_probs=200.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450            1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK   80 (223)
Q Consensus         1 m~~~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~   80 (223)
                      |||+||+++|++|++||++||+++|++|..+|+++|+.++.+++++++.++...|+++.++++..+++..|...+++|+.
T Consensus         8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~   87 (233)
T 4efa_E            8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK   87 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCC
Q 027450           81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH  160 (223)
Q Consensus        81 ~L~ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~  160 (223)
                      +|.+|+++|+++|+.|+++|.+++.++..|+.+|.+||.+|+..+++++++|+|+|.|.++++++++++...|+..+|+.
T Consensus        88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~  167 (233)
T 4efa_E           88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRA  167 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999998778999999999999999999999999999999999999999999999888875


Q ss_pred             CCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450          161 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH  222 (223)
Q Consensus       161 ~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~  222 (223)
                      .....++...+|++         .+|+|||+|+|.||+|+|||||++||+.+|++++|+||+
T Consensus       168 ~~~~~~~~~~~l~~---------~~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~  220 (233)
T 4efa_E          168 PLEEIVISNDYLNK---------DLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRL  220 (233)
T ss_dssp             CCCEEEECSSCCCT---------TTCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccccccCCc---------ccccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHH
Confidence            44333444456654         379999999999999999999999999999999999986

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=100.00  E-value=1.7e-32  Score=224.56  Aligned_cols=178  Identities=17%  Similarity=0.233  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK----QVEIRKKIEYSMQLNASRIKVLQAQDD   87 (223)
Q Consensus        12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~----~~e~~~~~~~S~~~~~~R~~~L~ar~~   87 (223)
                      ++...|.++|+++|++|+.+|+++++    .|+++++.++....+...+    +++..+++.+|++....|..+|.+|++
T Consensus         2 ~~~~~l~~eA~~~a~~I~~eA~~~a~----~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e   77 (187)
T 3v6i_A            2 KLEAILSQEVEAEIQALLQEAEAKAE----AVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE   77 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778889999999999999999888    8888888877766655543    344556677899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEec
Q 027450           88 LVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD  167 (223)
Q Consensus        88 ~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id  167 (223)
                      +++++|+.|+++|.+++.++ .|+.+|.+||.+|+..+++++++| |+|.|.++++.++++    +    |   +++..+
T Consensus        78 li~~v~~~a~~~L~~~~~~~-~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~----~----~---~~~~~~  144 (187)
T 3v6i_A           78 VLEEVRRRVREALEALPQKP-EWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE----R----G---VELQAE  144 (187)
T ss_dssp             HHHHHHHHHHHHHHHGGGST-THHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH----H----T---CEEEEC
T ss_pred             HHHHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh----c----C---eeeCCC
Confidence            99999999999999999985 799999999999999999988866 999999999988764    2    2   233211


Q ss_pred             cccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450          168 HHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH  222 (223)
Q Consensus       168 ~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~  222 (223)
                                      ++|.|||+|.|+||+|.|||||++||+.+|++++|.|++
T Consensus       145 ----------------~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~  183 (187)
T 3v6i_A          145 ----------------PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQ  183 (187)
T ss_dssp             ----------------TTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHH
Confidence                            379999999999999999999999999999999999985

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=99.96  E-value=3e-29  Score=205.28  Aligned_cols=187  Identities=22%  Similarity=0.331  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY----ERKEKQVEIRKKIEYSMQLNASRIKVLQAQ   85 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~----~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar   85 (223)
                      |+++++.|+++|+.+++.|..+|+++++    .|+.++..+...+.    +...++++..+++..|...+..|..++.+|
T Consensus         4 le~l~~~il~~A~~~a~~il~eA~~~a~----~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~   79 (198)
T 2dm9_A            4 AELIIQEINKEAERKIEYILNEARQQAE----KIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQ   79 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555544444    44444433332222    122344556677788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 027450           86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII  165 (223)
Q Consensus        86 ~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~  165 (223)
                      +++++.+|..|.+.|.+++  ++.|+.+|.+||.+++..++++.++|+|+|.|.+++..+++.+...|+      ++.++
T Consensus        80 ~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~------~~~l~  151 (198)
T 2dm9_A           80 EEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIE  151 (198)
T ss_dssp             -CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEE
T ss_pred             HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc------CceEE
Confidence            9999999999999999965  337999999999999999888899999999999999999988777775      24667


Q ss_pred             eccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450          166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH  222 (223)
Q Consensus       166 id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~  222 (223)
                      ++.       |       ..+.|||+|.+++|+|.|||||++||+.+++.++|.|++
T Consensus       152 i~~-------~-------~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~  194 (198)
T 2dm9_A          152 LGE-------T-------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAK  194 (198)
T ss_dssp             ECC-------C-------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHH
T ss_pred             ECC-------C-------CCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHH
Confidence            752       1       368999999999999999999999999999999999985

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=9.3e-26  Score=168.58  Aligned_cols=100  Identities=20%  Similarity=0.287  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHH-HHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCcc
Q 027450          109 SYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS  187 (223)
Q Consensus       109 ~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~-~~~~~~~~~~~~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~  187 (223)
                      .|+++|.+||.+|+..+++++++|+|+++|.+++++. ++++.++|+..+|+ .++|+++.       |       .+|+
T Consensus         4 ~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~-~~~v~~~~-------~-------~~~~   68 (106)
T 3lg8_A            4 EYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKK-VTVLKKGE-------P-------VDIA   68 (106)
T ss_dssp             STTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSS-CCCCCCCC-------C-------CSSS
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCC-eEEEEeCC-------C-------cccc
Confidence            7999999999999999999999999999999999998 99999999998887 45555442       2       4899


Q ss_pred             CceEEEecCCcEEEeccHHHHHHHHHhcCchhhhcC
Q 027450          188 GGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFHF  223 (223)
Q Consensus       188 GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~~  223 (223)
                      |||++.|.||+|.|||||++||+.++++++|+||+.
T Consensus        69 GGvil~s~dg~I~vdNTle~rL~~l~~~~~~eI~~~  104 (106)
T 3lg8_A           69 GGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEK  104 (106)
T ss_dssp             CBCBCSSCSCBCCCCSHHHHSHHHHHHHHHHHTTTS
T ss_pred             ccEEEEeCCCCEEEECCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999974

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=97.45  E-value=0.0005  Score=43.99  Aligned_cols=39  Identities=26%  Similarity=0.363  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~   52 (223)
                      |+++++.|+++|+.+|++|..+|+.+++    .|+.++..++.
T Consensus         8 le~i~~kI~~eA~~eA~~Il~eA~~eA~----~Ii~eA~~~Ae   46 (52)
T 2kk7_A            8 VDKIKSKILDDAKAEANKIISEAEAEKA----KILEKAKEEAE   46 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            8999999999999999999999999998    99888776654

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=97.41  E-value=0.00034  Score=55.92  Aligned_cols=121  Identities=17%  Similarity=0.195  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 027450            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKI--------EYSMQLNA   76 (223)
Q Consensus         5 ~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~--------~~S~~~~~   76 (223)
                      ++-++...+.++|+++|+++|++|..+|+++|+.++..+++++...+..........+....+.        ........
T Consensus        10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~~ev~~~~~~~   89 (198)
T 2dm9_A           10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEE   89 (198)
T ss_dssp             -----------------------------------------------------------------------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456788999999999999999999999999999999999999887776665554443322221        22333334


Q ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHh----hccChhHHHHHHHHHHHHHHHhcC
Q 027450           77 SRIKVLQ----AQDDLVSNMMEAASKEVLN----VSRDHNSYKKLLKGLIVQSLLRLK  126 (223)
Q Consensus        77 ~R~~~L~----ar~~~i~~v~~~a~e~L~~----~~~~~~~Y~~~L~~Li~ea~~~l~  126 (223)
                      ++..+..    ...+++..++.++...+..    +.-+| ....++..++......++
T Consensus        90 a~~~l~~l~~~~y~~~l~~li~e~~~~~~~~~v~i~v~~-~D~~~v~~~~~~~~~~~~  146 (198)
T 2dm9_A           90 VKRRLETMSEDEYFESVKALLKEAIKELNEKKVRVMSNE-KTLGLIASRIEEIKSELG  146 (198)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHHHHTCSEEEEECCH-HHHHHHHHTHHHHHHHCT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCEEEEECH-hHHHHHHHHHHHHHHHhc
Confidence            4422222    2357888888888887732    33345 455666888877666664

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=97.06  E-value=0.024  Score=45.27  Aligned_cols=114  Identities=18%  Similarity=0.131  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 027450            6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE--------YSMQLNAS   77 (223)
Q Consensus         6 ~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~--------~S~~~~~~   77 (223)
                      +....+.-.+.|+.+|+++|++|..+|+++++..+..+..+........+++....++...+..        +.......
T Consensus         7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a   86 (187)
T 3v6i_A            7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRV   86 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777889999999999999999999999987777777777777666666665555443322        23333444


Q ss_pred             HHHHHHH-----HHHHHHHHHHHHHHHHHh---hccChhHHHHHHHHHHHH
Q 027450           78 RIKVLQA-----QDDLVSNMMEAASKEVLN---VSRDHNSYKKLLKGLIVQ  120 (223)
Q Consensus        78 R~~~L~a-----r~~~i~~v~~~a~e~L~~---~~~~~~~Y~~~L~~Li~e  120 (223)
                      +..+.+.     ..+++..++.++...|..   +.-+| .-..++..++..
T Consensus        87 ~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~~~~~vv~~~-~D~~~v~~~~~~  136 (187)
T 3v6i_A           87 REALEALPQKPEWPEVVRKLALEALEALPGAKALVANP-EDLPHLEALARE  136 (187)
T ss_dssp             HHHHHHGGGSTTHHHHHHHHHHHHHHHCTTCCEEEECT-TTHHHHHHHHHH
T ss_pred             HHHHHhhhCCccHHHHHHHHHHHHHHHcCCCCeEEECH-HHHHHHHHHHHh
Confidence            4333221     446777777777666533   11233 224466666544

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=95.36  E-value=0.25  Score=31.84  Aligned_cols=31  Identities=13%  Similarity=-0.042  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027450           17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAE   47 (223)
Q Consensus        17 I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~   47 (223)
                      .+.+|+.++.+|+..|..+++..+..++.++
T Consensus         3 ~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A   33 (61)
T 1l2p_A            3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEA   33 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666664444443333

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=94.05  E-value=0.7  Score=29.66  Aligned_cols=48  Identities=21%  Similarity=0.308  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~   57 (223)
                      ...-...|+.+|+..+..|...+..++..+..+|+..+...|..+..+
T Consensus         7 Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~   54 (61)
T 1l2p_A            7 AKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKR   54 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556777777777777777777777767779988888777655443

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=93.84  E-value=0.046  Score=34.70  Aligned_cols=33  Identities=24%  Similarity=0.215  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027450            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFN   37 (223)
Q Consensus         5 ~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~   37 (223)
                      ++..+-+.-.+.|+.+|+.+|++|..+|+.+++
T Consensus        14 kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae   46 (52)
T 2kk7_A           14 KILDDAKAEANKIISEAEAEKAKILEKAKEEAE   46 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777888999999999999999998887

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=88.99  E-value=0.93  Score=29.00  Aligned_cols=27  Identities=22%  Similarity=0.139  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 027450           20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKK   50 (223)
Q Consensus        20 eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~   50 (223)
                      +|+..|++|..+|.++++    .|+.+++.+
T Consensus        23 eAE~~A~~iVeeA~~ea~----~ii~eAree   49 (56)
T 2k6i_A           23 LAEEQAVKEIEEAKNRAE----QIKAEAIEE   49 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            466666666666666655    555544433

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A

Probab=85.63  E-value=0.045  Score=43.80  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=15.1

Q ss_pred             CCCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450          183 GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (223)
Q Consensus       183 ~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~  216 (223)
                      |++++|||++..  |.-++|.|+.+||+.+...+
T Consensus       155 DpsLiGG~~v~v--gd~viD~Sv~~~L~~l~~~L  186 (190)
T 2wss_S          155 DPSIMGGMIVRI--GEKYVDMSAKTKIQKLSRAM  186 (190)
T ss_dssp             ----------------CCTTTTTTTTTTTTCTTT
T ss_pred             ChhHhCeEEEEE--CCEEEehhHHHHHHHHHHHH
Confidence            458999999998  77779999999998776655

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=85.22  E-value=14  Score=29.96  Aligned_cols=95  Identities=15%  Similarity=0.146  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA   96 (223)
Q Consensus        17 I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~~~a   96 (223)
                      +..+.+.-..-|+.+|+++|+    .|..++..+.+.+..+...++..    .+......+....-..++.....+..++
T Consensus        13 v~~~i~~m~~fI~qEA~eKA~----EI~~kAeeE~~~ek~~~v~~~~~----~i~~~~ek~~kq~e~~~~i~~S~~~~~a   84 (233)
T 4efa_E           13 VNDELNKMQAFIRKEAEEKAK----EIQLKADQEYEIEKTNIVRNETN----NIDGNFKSKLKKAMLSQQITKSTIANKM   84 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555667777887777    88766655443333222222221    1122222222233334455566666667


Q ss_pred             HHHHHhhccChhHHHHHHHHHHHHHHHhc
Q 027450           97 SKEVLNVSRDHNSYKKLLKGLIVQSLLRL  125 (223)
Q Consensus        97 ~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l  125 (223)
                      +.++..      ...+++..++.++...|
T Consensus        85 R~~vL~------ar~e~i~~v~~~a~~~L  107 (233)
T 4efa_E           85 RLKVLS------AREQSLDGIFEETKEKL  107 (233)
T ss_dssp             HHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH------HHHHHHHHHHHHHHHHH
Confidence            666654      35677888888887766

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=80.44  E-value=2.8  Score=26.76  Aligned_cols=28  Identities=25%  Similarity=0.223  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027450           10 IQQMVRFIRQEAEEKANEISVSAEEEFN   37 (223)
Q Consensus        10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~   37 (223)
                      .++-...|..+|++++++|++.|++++.
T Consensus        24 AE~~A~~iVeeA~~ea~~ii~eAreeAk   51 (56)
T 2k6i_A           24 AEEQAVKEIEEAKNRAEQIKAEAIEEAK   51 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556778889999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d2dm9a1	118	d.81.4.1 (A:81-198) V-type ATP synthase subunit E	4e-24

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 90.7 bits (225), Expect = 4e-24
 Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 22/134 (16%)

Query: 87  DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 146
           +++S+++E   + +  +S D   Y + +K L+ +++  L E  V +   +    L+ S +
Sbjct: 1   EIISSVLEEVKRRLETMSEDE--YFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRI 58

Query: 147 ESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD 206
           E  K E           I +                     GGV+V + DG+I  +NT +
Sbjct: 59  EEIKSELGDV------SIELGE--------------TVDTMGGVIVETEDGRIRIDNTFE 98

Query: 207 ARLDVVFRKKLPEV 220
           AR++    +    +
Sbjct: 99  ARMERFEGEIRSTI 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d2dm9a1	118	V-type ATP synthase subunit E {Pyrococcus horikosh	99.93
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	96.45
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	95.97

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.93  E-value=2.7e-26  Score=172.73  Aligned_cols=114  Identities=24%  Similarity=0.390  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEe
Q 027450           87 DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIV  166 (223)
Q Consensus        87 ~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~i  166 (223)
                      ++|+++|++|.++|.+++++  +|+++|++||.+|+..+++++++|+|+|+|.+++++++.++...++      +..+.+
T Consensus         1 E~i~~v~~~a~~~l~~~~~~--~Y~~~L~~Li~~a~~~l~~~ev~v~~~~~D~~~v~~~~~~~~~~~~------~~~~~~   72 (118)
T d2dm9a1           1 EIISSVLEEVKRRLETMSED--EYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIEL   72 (118)
T ss_dssp             CHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEEE
T ss_pred             CHHHHHHHHHHHHHHccChh--HHHHHHHHHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHHcC------CceeEe
Confidence            47899999999999999763  7999999999999999999999999999999999999987766654      245555


Q ss_pred             ccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450          167 DHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH  222 (223)
Q Consensus       167 d~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~  222 (223)
                      +.      +        ++|.|||||+|.||+|.|||||++||+.+|++++|+|++
T Consensus        73 ~~------~--------~~~~GGvil~s~dG~I~vdnTle~rl~~~~e~~~~~i~~  114 (118)
T d2dm9a1          73 GE------T--------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAK  114 (118)
T ss_dssp             CC------C--------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHH
T ss_pred             CC------C--------CccCCCEEEEecCCCEEEECcHHHHHHHHHHHhHHHHHH
Confidence            42      1        489999999999999999999999999999999999985

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.017  Score=36.39  Aligned_cols=39  Identities=21%  Similarity=0.328  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027450           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (223)
Q Consensus        14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~   52 (223)
                      .+.|+.+|+..+..|..+|..++..+..+|+..+...|+
T Consensus        11 Aa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe   49 (61)
T d1l2pa_          11 AQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIE   49 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444443

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.047  Score=34.27  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450           17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE   63 (223)
Q Consensus        17 I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e   63 (223)
                      -+.+|+.+|.+|+.+|+..+.    .|+++.+.+...+.++....+.
T Consensus         3 ~L~eAK~eAa~Ii~qA~~ra~----qIveeak~~A~~Ea~rI~~~A~   45 (61)
T d1l2pa_           3 QLKKAKAEAQVIIEQANKRRS----QILDEAKAEAEQERTKIVAQAQ   45 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            367999999999999999987    9999999988887776655444