Citrus Sinensis ID: 027462

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MSFEDKAAANMAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLLHQY
Secondary Structure (PSIPRED)
cccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHccHHHHHHHcHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHcccccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHcccccEEEcccccccccccEEHHEEEEEHEHHHccEEEEEEccccccccccHHHHHHHcHHHHHHHHHcccccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccc
Coil and Loop (DISEMBL)
MSFEDKAAANMAAGLAitseggryyngKMTVFVVLSCIVAATGglifgfdigisggvtsmepflKKFFPEVYRKMKedtkisnyckfdsQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQkwhhqnteehsplaskyvlplvsyplifsitapkrsrgagagespWQWLLLLHQY
Flexible Loop (DISEMBL)
MSFEDKAAANMAAGLaitseggryYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLLHQY
Low Complexity Region (SEG)
MSFEDKAAANMAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLLHQY
Disordered region (IsUnstruct)
************AGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPK*******GESPWQWLLLL***
Disordered Region (DISOPRED)
**************************GKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLLHQY
Disordered Region (DISEMBL)
*********NMAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKW**********LASKYVLPLVSYPLIFSITAPK********ESPWQWLLLLHQY
Disordered Region (DISPRO)
****************ITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLLHQ*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFEDKAAANMAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLLHQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q07423	510	Hexose carrier protein HE	N/A	no	0.753	0.329	0.654	3e-61
P23586	522	Sugar transport protein 1	yes	no	0.681	0.291	0.598	1e-46
Q41144	523	Sugar carrier protein C O	N/A	no	0.757	0.323	0.517	2e-46
Q8L7R8	514	Sugar transport protein 3	no	no	0.686	0.297	0.521	2e-45
Q39228	514	Sugar transport protein 4	no	no	0.677	0.293	0.592	4e-45
Q9FMX3	514	Sugar transport protein 1	no	no	0.757	0.328	0.482	2e-43
O65413	508	Sugar transport protein 1	no	no	0.730	0.320	0.492	3e-43
Q9SX48	517	Sugar transport protein 9	no	no	0.600	0.259	0.626	3e-42
Q93Y91	506	Sugar transport protein 5	no	no	0.663	0.292	0.590	4e-42
O04249	513	Sugar transport protein 7	no	no	0.650	0.282	0.568	4e-42

>sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1

 Score =  234 bits (598), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 129/197 (65%), Positives = 151/197 (76%), Gaps = 29/197 (14%)

Query: 11  MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
           MAAGLAITSEGG+Y NG+MT FV LSC++AA GG+IFG+DIG+SGGVTSM+PFLKKFFP+
Sbjct: 1   MAAGLAITSEGGQY-NGRMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPD 59

Query: 71  VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
           VYRKMKEDT+ISNYCKFDSQLL +FTSSLY++GL+AS FAS+VTRAFGRK SIL+GG  F
Sbjct: 60  VYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVF 119

Query: 131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLV 190
           LA +A+GGAA+N+YMLIFGRVLLGVG+GF NQ                            
Sbjct: 120 LAXAALGGAAVNVYMLIFGRVLLGVGVGFANQ---------------------------- 151

Query: 191 SYPLIFSITAPKRSRGA 207
           + PL  S  AP R RGA
Sbjct: 152 AVPLYLSEMAPPRYRGA 168

Active uptake of hexoses. Probable glucose/hydrogen symport.
Ricinus communis (taxid: 3988)

>sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2

 Score =  186 bits (471), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 114/152 (75%)

Query: 11  MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
           M AG  +  +G + Y GK+T FV+ +C+VAA GGLIFG+DIGISGGVTSM  FLK+FFP 
Sbjct: 1   MPAGGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60

Query: 71  VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
           VYRK +ED   + YC++DS  L  FTSSLY++ LI+SL ASTVTR FGR+ S+L GG  F
Sbjct: 61  VYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILF 120

Query: 131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ 162
            AG+ I G A +++MLI GR+LLG GIGF NQ
Sbjct: 121 CAGALINGFAKHVWMLIVGRILLGFGIGFANQ 152

Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1

 Score =  185 bits (469), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/199 (51%), Positives = 124/199 (62%), Gaps = 30/199 (15%)

Query: 11  MAAGLAITSEGG--RYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFF 68
           M A   I   GG  + Y G +T++V ++C+VAA GGLIFG+DIGISGGVTSM+ FLKKFF
Sbjct: 1   MPAVGGIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFF 60

Query: 69  PEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGT 128
           P VYRK K D   + YC++DSQ L  FTSSLY++ LIASL AST+TR FGRK S+L GG 
Sbjct: 61  PSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGV 120

Query: 129 AFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLP 188
            F AG+ I GAA  ++MLI GR+LLG GIGF NQ                          
Sbjct: 121 LFCAGAIINGAAKAVWMLILGRILLGFGIGFANQ-------------------------- 154

Query: 189 LVSYPLIFSITAPKRSRGA 207
             S PL  S  AP + RGA
Sbjct: 155 --SVPLYLSEMAPYKYRGA 171

Ricinus communis (taxid: 3988)

>sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2

 Score =  182 bits (462), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/186 (52%), Positives = 126/186 (67%), Gaps = 33/186 (17%)

Query: 27  GKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKI----- 81
           GK+T FVV SC++AA GG+IFG+DIG+SGGV SM PFLK+FFP+VY+  +ED +      
Sbjct: 18  GKITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEEDRRRRGNSN 77

Query: 82  SNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL 141
           ++YC F+SQLL +FTSSLY+SGLIA+L AS+VTR++GRK SI +GG +FLAG+A+GG+A 
Sbjct: 78  NHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAALGGSAQ 137

Query: 142 NIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP 201
           N+ MLI  R+LLGVG+GF NQ                            S PL  S  AP
Sbjct: 138 NVAMLIIARLLLGVGVGFANQ----------------------------SVPLYLSEMAP 169

Query: 202 KRSRGA 207
            + RGA
Sbjct: 170 AKYRGA 175

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1

 Score =  181 bits (459), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 90/152 (59%), Positives = 113/152 (74%), Gaps = 1/152 (0%)

Query: 11  MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
           MA G    + G R YN K+T  V ++C + A GGLIFG+D+GISGGVTSMEPFL++FFP 
Sbjct: 1   MAGGFVSQTPGVRNYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPY 60

Query: 71  VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
           VY+KMK   + + YC+FDSQLL  FTSSLY++ L++SLFAST+TR FGRK S+ +GG  F
Sbjct: 61  VYKKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTF 119

Query: 131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ 162
             GSA  G A NI ML+ GR+LLG G+GF NQ
Sbjct: 120 FIGSAFNGFAQNIAMLLIGRILLGFGVGFANQ 151

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1

 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 125/199 (62%), Gaps = 30/199 (15%)

Query: 11  MAAGLAITSEG-GRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFP 69
           MA G  I   G G  Y G++T FV+++CIVAA GGL+FG+DIGISGGV SME FL KFFP
Sbjct: 1   MAGGAFIDESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFP 60

Query: 70  EVYRKMKEDT-KISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGT 128
           +V R+M+    + + YCK+D++LL  FTSSLY++ L AS  AST+TR FGRK S+++G  
Sbjct: 61  DVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSL 120

Query: 129 AFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLP 188
           AFL+G+ + G A+N+ MLI GR+ LGVG+GF NQ                          
Sbjct: 121 AFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQ-------------------------- 154

Query: 189 LVSYPLIFSITAPKRSRGA 207
             S PL  S  AP + RGA
Sbjct: 155 --SVPLYLSEMAPAKIRGA 171

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose.

Arabidopsis thaliana (taxid: 3702)

>sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 94/191 (49%), Positives = 120/191 (62%), Gaps = 28/191 (14%)

Query: 17  ITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMK 76
           +  +G + Y GK+T++V ++CIVAA GGLIFG+DIGISGGVT+M+ F +KFFP VY K K
Sbjct: 7   VIGDGKKEYPGKLTLYVTVTCIVAAMGGLIFGYDIGISGGVTTMDSFQQKFFPSVYEKQK 66

Query: 77  EDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAI 136
           +D   + YC+FDS  L  FTSSLY++ L +SL AS VTR FGRK S+L+GG  F AG+ +
Sbjct: 67  KDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISMLLGGVLFCAGALL 126

Query: 137 GGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIF 196
            G A  ++MLI GR+LLG GIGFTNQ                            S PL  
Sbjct: 127 NGFATAVWMLIVGRLLLGFGIGFTNQ----------------------------SVPLYL 158

Query: 197 SITAPKRSRGA 207
           S  AP + RGA
Sbjct: 159 SEMAPYKYRGA 169

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/134 (62%), Positives = 104/134 (77%)

Query: 29  MTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFD 88
           +TVFV+++CIVAA GGL+FG+D+GISGGVTSME FL KFFPEV ++M E  + + YCKFD
Sbjct: 21  VTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFD 80

Query: 89  SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIF 148
           +QLL  FTSSLY++ L +S  AS VTR +GRK S+ VGG AFL GS     A N+ MLI 
Sbjct: 81  NQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIV 140

Query: 149 GRVLLGVGIGFTNQ 162
           GR+LLGVG+GF NQ
Sbjct: 141 GRLLLGVGVGFANQ 154

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Y91|STP5_ARATH Sugar transport protein 5 OS=Arabidopsis thaliana GN=STP5 PE=2 SV=1

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 113/149 (75%), Gaps = 1/149 (0%)

Query: 14  GLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYR 73
           GLA+        + K+T  VV+SCIVAA+ GLIFG+DIGISGGVT+M+PFL+KFFP V +
Sbjct: 5   GLALDVSSAGNIDAKITAAVVMSCIVAASCGLIFGYDIGISGGVTTMKPFLEKFFPSVLK 64

Query: 74  KMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAG 133
           K  E  K + YC +DSQLL AFTSSLY++GL+ASL AS +T A+GR+ ++++GG  FL G
Sbjct: 65  KASE-AKTNVYCVYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGRRTTMILGGFTFLFG 123

Query: 134 SAIGGAALNIYMLIFGRVLLGVGIGFTNQ 162
           + I G A NI MLI GR+LLG G+GFTNQ
Sbjct: 124 ALINGLAANIAMLISGRILLGFGVGFTNQ 152

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/146 (56%), Positives = 114/146 (78%), Gaps = 1/146 (0%)

Query: 17  ITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMK 76
           +  E    Y GK+T +V+++C+VAA GG IFG+DIGISGGVTSM+ FL++FF  VY K K
Sbjct: 11  VAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKK 70

Query: 77  EDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAI 136
           +  + SNYCK+D+Q LAAFTSSLY++GL+++L AS +TR +GR+ASI+ GG +FL GS +
Sbjct: 71  QAHE-SNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGL 129

Query: 137 GGAALNIYMLIFGRVLLGVGIGFTNQ 162
              A+N+ ML+ GR++LGVGIGF NQ
Sbjct: 130 NAGAVNLAMLLAGRIMLGVGIGFGNQ 155

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
224129904	516	predicted protein [Populus trichocarpa]	0.784	0.339	0.659	9e-63
356517750	501	PREDICTED: hexose carrier protein HEX6-l	0.753	0.335	0.659	3e-62
1708191	510	RecName: Full=Hexose carrier protein HEX	0.753	0.329	0.654	2e-59
357455795	509	Hexose carrier [Medicago truncatula] gi|	0.632	0.277	0.808	2e-59
255539853	510	sugar transporter, putative [Ricinus com	0.753	0.329	0.659	4e-59
47078687	508	putative hexose transporter [Vitis vinif	0.753	0.330	0.604	7e-59
225466031	508	PREDICTED: hexose carrier protein HEX6 [	0.753	0.330	0.604	7e-59
297745067	331	unnamed protein product [Vitis vinifera]	0.753	0.507	0.604	1e-58
147816021	508	hypothetical protein VITISV_025873 [Viti	0.753	0.330	0.598	5e-58
255539847	168	sugar transporter, putative [Ricinus com	0.677	0.898	0.723	5e-57

>gi|224129904|ref|XP_002328832.1| predicted protein [Populus trichocarpa] gi|222839130|gb|EEE77481.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 147/197 (74%), Gaps = 22/197 (11%)

Query: 11  MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
           MAAGLAI  EGG Y NGKMT FV LSC++A+ GG+IFG+DIGISGGVTSMEPFLKKFFPE
Sbjct: 1   MAAGLAIAGEGGEY-NGKMTWFVALSCMMASMGGVIFGYDIGISGGVTSMEPFLKKFFPE 59

Query: 71  VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
           VY +MKEDTKISNYCKFDSQLL +FTSSLY++GL+AS FAS++TR FGRK SIL GG AF
Sbjct: 60  VYARMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFFASSITRYFGRKPSILAGGAAF 119

Query: 131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLV 190
           L+GSA+ GAA N+YMLIFGRVLLGVG+GF NQ             E           P  
Sbjct: 120 LSGSALNGAATNLYMLIFGRVLLGVGVGFANQA----------GAE-----------PRR 158

Query: 191 SYPLIFSITAPKRSRGA 207
           + PL  S  AP R RGA
Sbjct: 159 AVPLYLSEMAPPRYRGA 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517750|ref|XP_003527549.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 147/197 (74%), Gaps = 29/197 (14%)

Query: 11  MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
           MA GLAI +EG R Y+GK+T  V+LSC+VAATGG+IFG+DIGISGGVTSM PFL+KFFP+
Sbjct: 1   MAVGLAIANEG-RGYSGKITSIVILSCMVAATGGIIFGYDIGISGGVTSMVPFLEKFFPD 59

Query: 71  VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
           VY KMK+DTK+SNYCKFDSQLL AFTSSLYI+GLIAS FAS+VTRAFGRK SIL+GG AF
Sbjct: 60  VYTKMKQDTKVSNYCKFDSQLLTAFTSSLYIAGLIASFFASSVTRAFGRKPSILIGGAAF 119

Query: 131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLV 190
           L G+A+GGAALNIYMLI GRV+LGVGIGF NQ                            
Sbjct: 120 LIGAALGGAALNIYMLILGRVMLGVGIGFANQ---------------------------- 151

Query: 191 SYPLIFSITAPKRSRGA 207
           S PL  S  AP R RGA
Sbjct: 152 SAPLYLSEMAPPRYRGA 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 129/197 (65%), Positives = 151/197 (76%), Gaps = 29/197 (14%)

Query: 11  MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
           MAAGLAITSEGG+Y NG+MT FV LSC++AA GG+IFG+DIG+SGGVTSM+PFLKKFFP+
Sbjct: 1   MAAGLAITSEGGQY-NGRMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPD 59

Query: 71  VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
           VYRKMKEDT+ISNYCKFDSQLL +FTSSLY++GL+AS FAS+VTRAFGRK SIL+GG  F
Sbjct: 60  VYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVF 119

Query: 131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLV 190
           LA +A+GGAA+N+YMLIFGRVLLGVG+GF NQ                            
Sbjct: 120 LAXAALGGAAVNVYMLIFGRVLLGVGVGFANQ---------------------------- 151

Query: 191 SYPLIFSITAPKRSRGA 207
           + PL  S  AP R RGA
Sbjct: 152 AVPLYLSEMAPPRYRGA 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455795|ref|XP_003598178.1| Hexose carrier [Medicago truncatula] gi|355487226|gb|AES68429.1| Hexose carrier [Medicago truncatula]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/141 (80%), Positives = 127/141 (90%)

Query: 22  GRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKI 81
           GR YNGKMT  V+LSC+VAATGG+IFG+DIGISGGVTSM PFL+KFFP+VY KMK+D KI
Sbjct: 12  GRGYNGKMTPIVILSCMVAATGGIIFGYDIGISGGVTSMVPFLEKFFPDVYTKMKQDNKI 71

Query: 82  SNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL 141
           SNYCKFDSQLL  FTSSLYI+GL+AS FAS++TRAFGRK SILVGG AFL G+A+GGAAL
Sbjct: 72  SNYCKFDSQLLTTFTSSLYIAGLLASFFASSITRAFGRKPSILVGGAAFLIGAALGGAAL 131

Query: 142 NIYMLIFGRVLLGVGIGFTNQ 162
           NIYMLI GRVLLGVGIGF NQ
Sbjct: 132 NIYMLILGRVLLGVGIGFANQ 152

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis]

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 151/197 (76%), Gaps = 29/197 (14%)

Query: 11  MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
           MAAGLAITSEGG+Y NG MT FV LSC++AA GG+IFG+DIG+SGGVTSM+PFLKKFFP+
Sbjct: 1   MAAGLAITSEGGQY-NGSMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPD 59

Query: 71  VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
           VYRKMKEDT+ISNYCKFDSQLL +FTSSLY++GL+AS FAS+VTRAFGRK SIL+GG  F
Sbjct: 60  VYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGAVF 119

Query: 131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLV 190
           LAG+A+GGAA+N+YMLIFGRVLLGVG+GF NQ                            
Sbjct: 120 LAGAALGGAAVNVYMLIFGRVLLGVGVGFANQ---------------------------- 151

Query: 191 SYPLIFSITAPKRSRGA 207
           + PL  S  AP R RGA
Sbjct: 152 AVPLYLSEMAPPRYRGA 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 119/197 (60%), Positives = 144/197 (73%), Gaps = 29/197 (14%)

Query: 11  MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
           MA G+A+TS GG +YNG++T+FVVLSC++A  GG+IFG+DIGISGGVTSM+ FLKKFFPE
Sbjct: 1   MAVGIAVTSHGG-HYNGRITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFFPE 59

Query: 71  VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
           VY++MKEDTKISNYCKFDSQLL +FTSSLYI+GL+AS  AS +T+ FGRK +IL GG AF
Sbjct: 60  VYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAF 119

Query: 131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLV 190
           L GSA+GGAA N+YM+I GR+LLGVG+GF NQ                            
Sbjct: 120 LIGSALGGAAFNVYMVILGRILLGVGVGFANQ---------------------------- 151

Query: 191 SYPLIFSITAPKRSRGA 207
           + PL  S  AP R RGA
Sbjct: 152 AVPLYLSEMAPPRYRGA 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 119/197 (60%), Positives = 144/197 (73%), Gaps = 29/197 (14%)

Query: 11  MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
           MA G+A+TS GG +YNG++T+FVVLSC++A  GG+IFG+DIGISGGVTSM+ FLKKFFPE
Sbjct: 1   MAVGIAVTSHGG-HYNGRITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFFPE 59

Query: 71  VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
           VY++MKEDTKISNYCKFDSQLL +FTSSLYI+GL+AS  AS +T+ FGRK +IL GG AF
Sbjct: 60  VYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAF 119

Query: 131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLV 190
           L GSA+GGAA N+YM+I GR+LLGVG+GF NQ                            
Sbjct: 120 LIGSALGGAAFNVYMVILGRILLGVGVGFANQ---------------------------- 151

Query: 191 SYPLIFSITAPKRSRGA 207
           + PL  S  AP R RGA
Sbjct: 152 AVPLYLSEMAPPRYRGA 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745067|emb|CBI38659.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 119/197 (60%), Positives = 144/197 (73%), Gaps = 29/197 (14%)

Query: 11  MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
           MA G+A+TS GG +YNG++T+FVVLSC++A  GG+IFG+DIGISGGVTSM+ FLKKFFPE
Sbjct: 1   MAVGIAVTSHGG-HYNGRITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFFPE 59

Query: 71  VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
           VY++MKEDTKISNYCKFDSQLL +FTSSLYI+GL+AS  AS +T+ FGRK +IL GG AF
Sbjct: 60  VYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAF 119

Query: 131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLV 190
           L GSA+GGAA N+YM+I GR+LLGVG+GF NQ                            
Sbjct: 120 LIGSALGGAAFNVYMVILGRILLGVGVGFANQ---------------------------- 151

Query: 191 SYPLIFSITAPKRSRGA 207
           + PL  S  AP R RGA
Sbjct: 152 AVPLYLSEMAPPRYRGA 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera]

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 143/197 (72%), Gaps = 29/197 (14%)

Query: 11  MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
           MA G+A+TS GG +YNG++T+FVVLSC++A  GG+IFG+DIGISGGVTSM+ FLKKFFP 
Sbjct: 1   MAVGIAVTSHGG-HYNGRITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFFPX 59

Query: 71  VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
           VY++MKEDTKISNYCKFDSQLL +FTSSLYI+GL+AS  AS +T+ FGRK +IL GG AF
Sbjct: 60  VYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAF 119

Query: 131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLV 190
           L GSA+GGAA N+YM+I GR+LLGVG+GF NQ                            
Sbjct: 120 LIGSALGGAAFNVYMVILGRILLGVGVGFANQ---------------------------- 151

Query: 191 SYPLIFSITAPKRSRGA 207
           + PL  S  AP R RGA
Sbjct: 152 AVPLYLSEMAPPRYRGA 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539847|ref|XP_002510988.1| sugar transporter, putative [Ricinus communis] gi|223550103|gb|EEF51590.1| sugar transporter, putative [Ricinus communis]

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 110/152 (72%), Positives = 133/152 (87%), Gaps = 1/152 (0%)

Query: 11  MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
           MA GLA+ SEG +Y NG+MT FV LSC++AA GG+IFG+DIG+ GGVTSM+PFLKK FP+
Sbjct: 1   MAPGLAMASEGDQY-NGRMTSFVFLSCMMAAMGGVIFGYDIGVPGGVTSMDPFLKKIFPD 59

Query: 71  VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
           VYRKMKE+ KISNYCKFDSQLL +FTSSLY++GL+AS FAS+VTRAFGRK SIL+G TAF
Sbjct: 60  VYRKMKEEKKISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGDTAF 119

Query: 131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ 162
           +A +A+GGAA+N+ MLIFG  LLGVG+GF NQ
Sbjct: 120 IARTALGGAAVNVSMLIFGCDLLGVGVGFANQ 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2151596	514	AT5G61520 [Arabidopsis thalian	0.636	0.276	0.617	6e-46
TAIR|locus:2202044	522	STP1 "AT1G11260" [Arabidopsis	0.708	0.302	0.581	2.7e-45
TAIR|locus:2166781	514	STP11 "sugar transporter 11" [	0.708	0.307	0.549	3.3e-45
TAIR|locus:2092286	514	STP4 "sugar transporter 4" [Ar	0.677	0.293	0.592	3.9e-44
TAIR|locus:2011957	517	STP9 "sugar transporter 9" [Ar	0.699	0.301	0.590	5e-44
TAIR|locus:2092221	514	AT3G19940 [Arabidopsis thalian	0.699	0.303	0.565	2.2e-43
TAIR|locus:2009323	506	AT1G34580 [Arabidopsis thalian	0.690	0.304	0.573	4e-42
TAIR|locus:2132213	513	STP7 "sugar transporter protei	0.677	0.294	0.551	6.6e-42
TAIR|locus:2195995	504	STP14 "sugar transport protein	0.699	0.309	0.5	2.9e-39
TAIR|locus:2151074	526	MSS1 "AT5G26340" [Arabidopsis	0.681	0.288	0.535	2.9e-39

TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 92/149 (61%), Positives = 120/149 (80%)

Query:    27 GKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKI---SN 83
             GK+T FVV SC++AA GG+IFG+DIG+SGGV SM PFLK+FFP+VY+  +ED +    SN
Sbjct:    18 GKITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEEDRRRRGNSN 77

Query:    84 --YCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL 141
               YC F+SQLL +FTSSLY+SGLIA+L AS+VTR++GRK SI +GG +FLAG+A+GG+A 
Sbjct:    78 NHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAALGGSAQ 137

Query:   142 NIYMLIFGRVLLGVGIGFTNQC--RYISQ 168
             N+ MLI  R+LLGVG+GF NQ    Y+S+
Sbjct:   138 NVAMLIIARLLLGVGVGFANQSVPLYLSE 166

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 93/160 (58%), Positives = 118/160 (73%)

Query:    11 MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
             M AG  +  +G + Y GK+T FV+ +C+VAA GGLIFG+DIGISGGVTSM  FLK+FFP 
Sbjct:     1 MPAGGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60

Query:    71 VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
             VYRK +ED   + YC++DS  L  FTSSLY++ LI+SL ASTVTR FGR+ S+L GG  F
Sbjct:    61 VYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILF 120

Query:   131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC--RYISQ 168
              AG+ I G A +++MLI GR+LLG GIGF NQ    Y+S+
Sbjct:   121 CAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSE 160

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 89/162 (54%), Positives = 119/162 (73%)

Query:    11 MAAGLAITSEG-GRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFP 69
             MA G  I   G G  Y G++T FV+++CIVAA GGL+FG+DIGISGGV SME FL KFFP
Sbjct:     1 MAGGAFIDESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFP 60

Query:    70 EVYRKMKEDT-KISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGT 128
             +V R+M+    + + YCK+D++LL  FTSSLY++ L AS  AST+TR FGRK S+++G  
Sbjct:    61 DVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSL 120

Query:   129 AFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC--RYISQ 168
             AFL+G+ + G A+N+ MLI GR+ LGVG+GF NQ    Y+S+
Sbjct:   121 AFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSE 162

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 90/152 (59%), Positives = 113/152 (74%)

Query:    11 MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
             MA G    + G R YN K+T  V ++C + A GGLIFG+D+GISGGVTSMEPFL++FFP 
Sbjct:     1 MAGGFVSQTPGVRNYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPY 60

Query:    71 VYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130
             VY+KMK   + + YC+FDSQLL  FTSSLY++ L++SLFAST+TR FGRK S+ +GG  F
Sbjct:    61 VYKKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTF 119

Query:   131 LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ 162
               GSA  G A NI ML+ GR+LLG G+GF NQ
Sbjct:   120 FIGSAFNGFAQNIAMLLIGRILLGFGVGFANQ 151

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0008506 "sucrose:hydrogen symporter activity" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IDA

GO:0015770 "sucrose transport" evidence=TAS

TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 95/161 (59%), Positives = 117/161 (72%)

Query:    13 AGLAITSEGG---RYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFP 69
             AG A  SEGG     Y G +TVFV+++CIVAA GGL+FG+D+GISGGVTSME FL KFFP
Sbjct:     2 AGGAFVSEGGGGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFP 61

Query:    70 EVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTA 129
             EV ++M E  + + YCKFD+QLL  FTSSLY++ L +S  AS VTR +GRK S+ VGG A
Sbjct:    62 EVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVA 121

Query:   130 FLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR--YISQ 168
             FL GS     A N+ MLI GR+LLGVG+GF NQ    Y+S+
Sbjct:   122 FLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSE 162

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 91/161 (56%), Positives = 117/161 (72%)

Query:    13 AGLAITSEGG---RYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFP 69
             AG A  SEGG   R Y G +T FV+++CIVAA GGL+FG+D+GISGGVTSME FL KFFP
Sbjct:     2 AGGAFVSEGGGGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFP 61

Query:    70 EVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTA 129
             +V  +MK+    + YCKFD+Q+L  FTSSLY++ L+AS  AS +TR  GRK S+ +GG A
Sbjct:    62 QVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLA 121

Query:   130 FLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR--YISQ 168
             FL G+     A+N+ MLI GR+LLGVG+GF NQ    Y+S+
Sbjct:   122 FLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSE 162

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 90/157 (57%), Positives = 117/157 (74%)

Query:    14 GLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYR 73
             GLA+        + K+T  VV+SCIVAA+ GLIFG+DIGISGGVT+M+PFL+KFFP V +
Sbjct:     5 GLALDVSSAGNIDAKITAAVVMSCIVAASCGLIFGYDIGISGGVTTMKPFLEKFFPSVLK 64

Query:    74 KMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAG 133
             K  E  K + YC +DSQLL AFTSSLY++GL+ASL AS +T A+GR+ ++++GG  FL G
Sbjct:    65 KASE-AKTNVYCVYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGRRTTMILGGFTFLFG 123

Query:   134 SAIGGAALNIYMLIFGRVLLGVGIGFTNQCR--YISQ 168
             + I G A NI MLI GR+LLG G+GFTNQ    Y+S+
Sbjct:   124 ALINGLAANIAMLISGRILLGFGVGFTNQAAPVYLSE 160

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 85/154 (55%), Positives = 118/154 (76%)

Query:    17 ITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMK 76
             +  E    Y GK+T +V+++C+VAA GG IFG+DIGISGGVTSM+ FL++FF  VY K K
Sbjct:    11 VAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKK 70

Query:    77 EDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAI 136
             +  + SNYCK+D+Q LAAFTSSLY++GL+++L AS +TR +GR+ASI+ GG +FL GS +
Sbjct:    71 QAHE-SNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGL 129

Query:   137 GGAALNIYMLIFGRVLLGVGIGFTNQC--RYISQ 168
                A+N+ ML+ GR++LGVGIGF NQ    Y+S+
Sbjct:   130 NAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSE 163

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 81/162 (50%), Positives = 113/162 (69%)

Query:    13 AGLAITSEGG----RYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFF 68
             AG A+T EGG      Y  ++T + + +CIV + GG +FG+D+G+SGGVTSM+ FLK+FF
Sbjct:     2 AGGALTDEGGLKRAHLYEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFF 61

Query:    69 PEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGT 128
             P +Y++ +     ++YCK+D+Q+L  FTSSLY +GLI++  AS VTR +GR+ SILVG  
Sbjct:    62 PGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSV 121

Query:   129 AFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC--RYISQ 168
             +F  G  I  AA NI MLI GR+ LG+GIGF NQ    Y+S+
Sbjct:   122 SFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSE 163

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005354 "galactose transmembrane transporter activity" evidence=IGI

TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 82/153 (53%), Positives = 108/153 (70%)

Query:    11 MAAGLAITSEGGRYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPE 70
             M  G   TS  G  +  K+T  V++SCI+AATGGL+FG+D+G+SGGVTSM  FL+KFFP 
Sbjct:     1 MTGGGFATSANGVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPV 60

Query:    71 VYRKMKEDT-KISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTA 129
             VYRK+     K SNYCK+D+Q L  FTSSLY++GL A+ FAS  TR  GR+ ++L+ G  
Sbjct:    61 VYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVF 120

Query:   130 FLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ 162
             F+ G A+   A ++ MLI GR+LLG G+GF NQ
Sbjct:   121 FIIGVALNAGAQDLAMLIAGRILLGCGVGFANQ 153

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005358 "high-affinity hydrogen:glucose symporter activity" evidence=IDA

GO:0009679 "hexose:hydrogen symporter activity" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0043090 "amino acid import" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	HT4	SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (508 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002307001	SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (506 aa)							•		0.481
	VvSUC11	SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (501 aa)							•		0.480

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	7e-19
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	4e-18
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-05
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-04
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	0.001
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.003

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 83.9 bits (208), Expect = 7e-19
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 13/139 (9%)

Query: 37  CIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFT 96
            +VAA GG +FG+D G+ G   ++  F K+F           + +         L     
Sbjct: 2   ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTV---------LSGLIV 52

Query: 97  SSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA--LNIYMLIFGRVLLG 154
           S   +  LI SLFA  +   FGRK S+L+G   F+ G+ + G A   + YMLI GRV++G
Sbjct: 53  SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112

Query: 155 VGIGFTNQC--RYISQKWH 171
           +G+G  +     YIS+   
Sbjct: 113 LGVGGISVLVPMYISEIAP 131

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 82.0 bits (203), Expect = 4e-18
 Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 15/138 (10%)

Query: 24  YYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISN 83
              G     V L  ++AA GGL+FG+D G+ GG  ++  F  KF              +N
Sbjct: 17  AGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTS------------AN 64

Query: 84  YCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA---A 140
              + S L     S   + G I +LFA  ++  FGRK S+L+    F+ G+ + G    A
Sbjct: 65  SDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA 124

Query: 141 LNIYMLIFGRVLLGVGIG 158
           L++ MLI GRVLLG+G+G
Sbjct: 125 LSVEMLIVGRVLLGIGVG 142

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 21/79 (26%), Positives = 39/79 (49%)

Query: 81  ISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA 140
           ++      +       S+  +   + SL A  ++  FGR+  +L+G   F  GS +   A
Sbjct: 25  LAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA 84

Query: 141 LNIYMLIFGRVLLGVGIGF 159
            ++++L+ GR LLG+G G 
Sbjct: 85  SSLWLLLVGRFLLGLGGGA 103

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 35/150 (23%), Positives = 54/150 (36%), Gaps = 35/150 (23%)

Query: 25  YNGKMTVFVVLSCIVAATGGLIFGFDIG-ISGGVTSMEPFLK--KFFPEVYRKMKEDTKI 81
           YN      + L   VA  GGL+FG+D   ISG V S+       +   E           
Sbjct: 5   YNSSYIFSITL---VATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESA--------- 52

Query: 82  SNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL 141
                  + LL    +S  I  +I        +  FGR+ S+ +    F   SA+G A  
Sbjct: 53  ------ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI-SALGSAWP 105

Query: 142 N-------------IYMLIFGRVLLGVGIG 158
                         +   +  R++ G+G+G
Sbjct: 106 EFGFTSIGPDNTGYVPEFVIYRIIGGIGVG 135

Length = 479

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 88  DSQLLAAFTSSLYISGLIAS-LFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYML 146
           ++QL  AF  S+Y++G+ A+ LFA  +    GRK   + G   F+  S +   A    + 
Sbjct: 37  EAQLHIAF--SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLF 94

Query: 147 IFGRVLLGVGIGF 159
           + GR L G+G G 
Sbjct: 95  LAGRFLQGIGAGC 107

Length = 392

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 17/73 (23%), Positives = 34/73 (46%)

Query: 87  FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYML 146
                +    ++  +   +A   A  ++  FGR+  +L+G   F  G  +   A ++++L
Sbjct: 29  ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL 88

Query: 147 IFGRVLLGVGIGF 159
           +  RVL G+G G 
Sbjct: 89  LVLRVLQGLGGGA 101

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
KOG0254	513	consensus Predicted transporter (major facilitator	99.65
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.62
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.6
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.6
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.56
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.55
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.55
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.54
KOG0569	485	consensus Permease of the major facilitator superf	99.53
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.52
TIGR00891	405	2A0112 putative sialic acid transporter.	99.52
PRK03545	390	putative arabinose transporter; Provisional	99.51
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.51
PRK12307	426	putative sialic acid transporter; Provisional	99.51
PRK10642	490	proline/glycine betaine transporter; Provisional	99.49
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.48
PRK09705	393	cynX putative cyanate transporter; Provisional	99.48
PRK03893	496	putative sialic acid transporter; Provisional	99.46
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.44
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.44
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.43
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.43
PRK10091	382	MFS transport protein AraJ; Provisional	99.43
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.42
PRK11663	434	regulatory protein UhpC; Provisional	99.41
PRK10133	438	L-fucose transporter; Provisional	99.39
PRK09952	438	shikimate transporter; Provisional	99.39
PRK10504	471	putative transporter; Provisional	99.38
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.37
PRK03699	394	putative transporter; Provisional	99.37
PRK15075	434	citrate-proton symporter; Provisional	99.36
PRK05122	399	major facilitator superfamily transporter; Provisi	99.36
TIGR00895	398	2A0115 benzoate transport.	99.36
PRK12382	392	putative transporter; Provisional	99.35
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.35
PLN00028	476	nitrate transmembrane transporter; Provisional	99.35
PRK03633	381	putative MFS family transporter protein; Provision	99.35
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.34
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.33
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.33
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.33
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.32
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.32
TIGR00893	399	2A0114 d-galactonate transporter.	99.3
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.29
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.28
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.28
TIGR00898	505	2A0119 cation transport protein.	99.28
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.26
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.26
TIGR00900	365	2A0121 H+ Antiporter protein.	99.25
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.25
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.25
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.23
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.23
KOG2615	451	consensus Permease of the major facilitator superf	99.22
PRK09874	408	drug efflux system protein MdtG; Provisional	99.22
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.2
PRK11043	401	putative transporter; Provisional	99.19
PTZ00207	591	hypothetical protein; Provisional	99.19
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.18
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.18
TIGR00805	633	oat sodium-independent organic anion transporter.	99.15
KOG2532	466	consensus Permease of the major facilitator superf	99.14
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.14
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.13
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.13
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.13
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.09
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.09
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.05
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.05
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.04
PRK10054	395	putative transporter; Provisional	99.03
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.01
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.99
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.97
KOG2533	495	consensus Permease of the major facilitator superf	98.89
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.88
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.87
PRK10489	417	enterobactin exporter EntS; Provisional	98.84
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.84
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.84
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.79
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.79
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.75
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.73
PRK10642	490	proline/glycine betaine transporter; Provisional	98.73
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.7
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.69
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.66
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.64
PRK15011	393	sugar efflux transporter B; Provisional	98.64
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.63
PRK15011	393	sugar efflux transporter B; Provisional	98.62
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.62
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.6
PRK03699	394	putative transporter; Provisional	98.59
TIGR00891	405	2A0112 putative sialic acid transporter.	98.58
TIGR00901	356	2A0125 AmpG-related permease.	98.58
PRK11010	491	ampG muropeptide transporter; Validated	98.57
TIGR00895	398	2A0115 benzoate transport.	98.55
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.54
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.51
TIGR00900	365	2A0121 H+ Antiporter protein.	98.5
TIGR00901	356	2A0125 AmpG-related permease.	98.49
PRK12382	392	putative transporter; Provisional	98.45
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.44
PRK05122	399	major facilitator superfamily transporter; Provisi	98.44
PRK09528	420	lacY galactoside permease; Reviewed	98.42
PRK11902	402	ampG muropeptide transporter; Reviewed	98.41
TIGR00893	399	2A0114 d-galactonate transporter.	98.4
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.38
PRK09952	438	shikimate transporter; Provisional	98.37
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.35
KOG0569	485	consensus Permease of the major facilitator superf	98.32
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.31
PRK15075	434	citrate-proton symporter; Provisional	98.31
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.3
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.28
PRK10489	417	enterobactin exporter EntS; Provisional	98.28
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.27
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.27
PRK03893	496	putative sialic acid transporter; Provisional	98.26
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.23
PRK09528	420	lacY galactoside permease; Reviewed	98.23
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.23
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.2
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.2
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.19
PRK10504	471	putative transporter; Provisional	98.19
PRK03545	390	putative arabinose transporter; Provisional	98.17
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.13
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.12
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.12
PRK09874	408	drug efflux system protein MdtG; Provisional	98.12
PRK12307	426	putative sialic acid transporter; Provisional	98.12
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.1
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.1
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.07
PRK09705	393	cynX putative cyanate transporter; Provisional	98.07
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.07
PRK03633	381	putative MFS family transporter protein; Provision	98.07
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.06
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.06
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.03
KOG2563	480	consensus Permease of the major facilitator superf	98.01
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.01
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.98
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.95
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.95
PF13347	428	MFS_2: MFS/sugar transport protein	97.93
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.93
TIGR00898	505	2A0119 cation transport protein.	97.9
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.9
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.87
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.86
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.85
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.84
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.83
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.83
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.82
PLN00028	476	nitrate transmembrane transporter; Provisional	97.81
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.81
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.81
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.76
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.76
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.74
PRK10133	438	L-fucose transporter; Provisional	97.73
COG0477	338	ProP Permeases of the major facilitator superfamil	97.72
PRK10091	382	MFS transport protein AraJ; Provisional	97.72
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.67
PRK10054	395	putative transporter; Provisional	97.64
PRK11010	491	ampG muropeptide transporter; Validated	97.63
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.62
PRK09848	448	glucuronide transporter; Provisional	97.61
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.6
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.59
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.59
PRK10429	473	melibiose:sodium symporter; Provisional	97.59
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.55
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.54
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.54
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.54
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.52
PRK11043	401	putative transporter; Provisional	97.52
PRK11663	434	regulatory protein UhpC; Provisional	97.52
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.51
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.46
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.44
KOG2532	466	consensus Permease of the major facilitator superf	97.43
KOG0254	513	consensus Predicted transporter (major facilitator	97.36
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.29
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.27
PF12832	77	MFS_1_like: MFS_1 like family	97.27
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.22
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.18
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.11
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.11
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.96
PRK09669	444	putative symporter YagG; Provisional	96.95
PRK09669	444	putative symporter YagG; Provisional	96.91
PRK11902	402	ampG muropeptide transporter; Reviewed	96.89
COG2211	467	MelB Na+/melibiose symporter and related transport	96.88
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.84
PRK10429	473	melibiose:sodium symporter; Provisional	96.81
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.81
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	96.77
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.77
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.64
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.6
PRK11462	460	putative transporter; Provisional	96.42
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.3
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.29
PRK09848	448	glucuronide transporter; Provisional	96.25
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.2
PF13347	428	MFS_2: MFS/sugar transport protein	96.1
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.08
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	95.67
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	95.66
PRK15403	413	multidrug efflux system protein MdtM; Provisional	95.44
PRK11462	460	putative transporter; Provisional	95.29
KOG2533	495	consensus Permease of the major facilitator superf	95.25
KOG3764	464	consensus Vesicular amine transporter [Intracellul	95.18
PRK15462	493	dipeptide/tripeptide permease D; Provisional	94.94
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	94.7
KOG2816	463	consensus Predicted transporter ADD1 (major facili	94.45
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	94.17
KOG3626	735	consensus Organic anion transporter [Secondary met	94.09
KOG3762	618	consensus Predicted transporter [General function	94.04
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	93.39
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	92.92
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	92.82
KOG3762	618	consensus Predicted transporter [General function	92.8
COG2211	467	MelB Na+/melibiose symporter and related transport	92.65
KOG0637	498	consensus Sucrose transporter and related proteins	92.48
COG2270	438	Permeases of the major facilitator superfamily [Ge	92.41
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	92.2
PTZ00207	591	hypothetical protein; Provisional	91.3
KOG3098	461	consensus Uncharacterized conserved protein [Funct	91.12
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	89.25
TIGR00805	633	oat sodium-independent organic anion transporter.	88.59
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	88.22
KOG2615	451	consensus Permease of the major facilitator superf	87.56
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	85.15
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	85.1
PRK03612	521	spermidine synthase; Provisional	83.92
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	83.83
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	83.79

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.65  E-value=1.1e-15  Score=141.74  Aligned_cols=153  Identities=32%  Similarity=0.463  Sum_probs=123.4

Q ss_pred             CCCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCCh--hHHHHHHHHHHHHH
Q 027462           26 NGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDS--QLLAAFTSSLYISG  103 (223)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~lg~  103 (223)
                      ..+........+....++.+.+|++ +..+....+....+++.......            .+.  .+.+|+.+...++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~~~~------------~~~~~~~~s~~~s~~~lga  102 (513)
T KOG0254|consen   36 PTMISPFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLYDLS------------TGEYSVRQGLLTSILNLGA  102 (513)
T ss_pred             cccCceehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhcccccccc------------cchhHHHHHHHHHHHHHHH
Confidence            3445556677788888999999998 43333343345555543221111            122  56799999999999


Q ss_pred             HHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhh
Q 027462          104 LIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLAS  183 (223)
Q Consensus       104 ~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (223)
                      .+++++.|+++|++|||+.++++.+++.++.+++++++++.+++++|++.|+|.|.....                    
T Consensus       103 ~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~--------------------  162 (513)
T KOG0254|consen  103 LVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVL--------------------  162 (513)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhc--------------------
Confidence            999999999999999999999999999999999999999999999999999999999998                    


Q ss_pred             hcccCccchhhhhhhccCCCCCcccccchhhhhhhh
Q 027462          184 KYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLL  219 (223)
Q Consensus       184 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~  219 (223)
                              .|.+.+|+.|++.||...+..++-+.++
T Consensus       163 --------~piy~sEiap~~~RG~l~~~~~l~~~~G  190 (513)
T KOG0254|consen  163 --------APVYISEIAPAHIRGTLVSLYQLFITIG  190 (513)
T ss_pred             --------chhhHhhcCChhhhHHHHHHHHHHHHHH
Confidence                    9999999999999999998766555544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.62  E-value=6.1e-15  Score=134.12  Aligned_cols=177  Identities=16%  Similarity=0.250  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhH
Q 027462           31 VFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFA  110 (223)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~  110 (223)
                      +....++++++++.+..+||.+++++..  |.+.+.|.+.          ...+.+.++.+.+++.+.+.++..+++++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~   75 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAP----------QNLSESAANSLLGFCVASALIGCIIGGALG   75 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhH--HHHHHHhccc----------ccccccCChhHHHHHHHHHHHHHHHHHHHH
Confidence            4455667777788899999999988654  7788877532          233346789999999999999999999999


Q ss_pred             HhHHhhhchhHHHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-ccc
Q 027462          111 STVTRAFGRKASILVGGTAFLAGSAIGGAA------------LNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNT  175 (223)
Q Consensus       111 g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a------------~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~  175 (223)
                      |++.||+|||++++++.+++.++.+.++++            ..+..+++.|+++|++.|...+...  +++.+++ +|+
T Consensus        76 G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg  155 (479)
T PRK10077         76 GYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRG  155 (479)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhh
Confidence            999999999999999999998888877753            2256788999999999999888654  6666654 488


Q ss_pred             ccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          176 EEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      ++.+..+....+|.++++....-..+.. .+......+|||.|.+
T Consensus       156 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~~~~~gWr~~f~~  199 (479)
T PRK10077        156 KLVSFNQFAIIFGQLVVYFVNYFIARSG-DASWLNTDGWRYMFAS  199 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccC-cccccccCChHHHHHH
Confidence            8888888888888877665433222221 1122234589988865

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.60  E-value=2.1e-15  Score=139.04  Aligned_cols=160  Identities=16%  Similarity=0.088  Sum_probs=136.4

Q ss_pred             HHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHh
Q 027462           33 VVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFAST  112 (223)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~  112 (223)
                      .+.....++++.++...|.++++..  +|.+.++++                  .+.++.+|+.+.+.++..+..++.|+
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a--~p~i~~~l~------------------~s~~~~~~~~~~~~l~~~~~~~~~G~   63 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVA--APTLSMTLG------------------ASGNELLWIIDIYSLVMAGMVLPMGA   63 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhC------------------CCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677788889999999998744  599988885                  57889999999999999999999999


Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccc-c-ccccccccchhhhcccC
Q 027462          113 VTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKW-H-HQNTEEHSPLASKYVLP  188 (223)
Q Consensus       113 l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~  188 (223)
                      +.||+|||++++++.+++.+++++++++++++.++++|+++|+|.+...+...  +.+.+ + ++|+++++.....+.+|
T Consensus        64 l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g  143 (495)
T PRK14995         64 LGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGG  143 (495)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988766433  44444 3 45999999999999999


Q ss_pred             ccchhhhhhhccCCCCCcccccchhhhhhhhhc
Q 027462          189 LVSYPLIFSITAPKRSRGAGAGESPWQWLLLLH  221 (223)
Q Consensus       189 ~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l~  221 (223)
                      .+++|.+...+.+         ..+|||.|.++
T Consensus       144 ~~~gp~lgg~l~~---------~~gwr~~f~i~  167 (495)
T PRK14995        144 AAFGPLVGGILLE---------HFYWGSVFLIN  167 (495)
T ss_pred             HHHHHHHHHHhhc---------cCChHHHHHHH
Confidence            9999987665554         35799988764

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.60  E-value=1.1e-14  Score=130.25  Aligned_cols=128  Identities=13%  Similarity=0.166  Sum_probs=112.3

Q ss_pred             HHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHh
Q 027462           36 SCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTR  115 (223)
Q Consensus        36 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~d  115 (223)
                      ..+.++++.|..+.+..+..++.  |++.++++                  ++....+++.|.|.++..++.++...+.|
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLL--p~iA~dl~------------------vs~~~aG~lis~yAl~~ai~ap~l~~lt~   73 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLL--PPIAADLG------------------VSEGAAGQLITAYALGVALGAPLLALLTG   73 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhch--HHHHHHcC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34556677788888887776664  89988885                  79999999999999999999999999999


Q ss_pred             hhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhhhcccCccchhhh
Q 027462          116 AFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLI  195 (223)
Q Consensus       116 r~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (223)
                      |++||++++....++.++++++++++|+..++++|++.|+..|...+.                            ...+
T Consensus        74 r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i----------------------------~~~~  125 (394)
T COG2814          74 RLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSI----------------------------AAAL  125 (394)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH----------------------------HHHH
Confidence            999999999999999999999999999999999999999999999998                            6666


Q ss_pred             hhhccCCCCCcccccc
Q 027462          196 FSITAPKRSRGAGAGE  211 (223)
Q Consensus       196 ~~~~~p~~~rg~~~~~  211 (223)
                      ..++.|+++|++++++
T Consensus       126 a~~lvpp~~~~~Aiai  141 (394)
T COG2814         126 AARLVPPGKRGRALAL  141 (394)
T ss_pred             HHHHcCccchhhHHHH
Confidence            7777777777776665

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.56  E-value=2.9e-14  Score=131.58  Aligned_cols=149  Identities=22%  Similarity=0.167  Sum_probs=123.0

Q ss_pred             CCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHH
Q 027462           27 GKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIA  106 (223)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~  106 (223)
                      .+..+.++..+++++++.+.++||.+.++.+.  |.+.+++..             .+.+.++.+.+++.+...++..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ig~~ig   72 (502)
T TIGR00887         8 APFGWQHFRAIVIAGVGFFTDSYDLFCISLVT--KMLGYVYYH-------------GKGPLPSSVSAAVNGSASIGTLAG   72 (502)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcc-------------CcccchHHHHHHHHHHHHHHHHHH
Confidence            45566777788888889999999999988665  444333220             012346778899999999999999


Q ss_pred             HHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccc
Q 027462          107 SLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALN------IYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSP  180 (223)
Q Consensus       107 ~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~------~~~l~v~r~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~  180 (223)
                      .++.|++.||+|||+.+.++.++..++.++++++++      +.+++++|++.|++.|...+.                 
T Consensus        73 ~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~-----------------  135 (502)
T TIGR00887        73 QLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPL-----------------  135 (502)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHH-----------------
Confidence            999999999999999999999999999988888754      678999999999999999998                 


Q ss_pred             hhhhcccCccchhhhhhhccCCCCCcccccchhhhhhh
Q 027462          181 LASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLL  218 (223)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~  218 (223)
                                 .+.+..|++|++.||+++++.+..+.+
T Consensus       136 -----------~~~~~~e~~p~~~Rg~~~~~~~~~~~~  162 (502)
T TIGR00887       136 -----------SAIITSEFATKKWRGAMMAAVFAMQGF  162 (502)
T ss_pred             -----------HHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence                       899999999999999999876555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.55  E-value=4.3e-14  Score=127.90  Aligned_cols=173  Identities=17%  Similarity=0.147  Sum_probs=117.5

Q ss_pred             CCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhH---HHHHHHHHHHHH
Q 027462           27 GKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQL---LAAFTSSLYISG  103 (223)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~~s~~~lg~  103 (223)
                      ...+.+++.......++.++..||..+++.+.  |.+.+++++.-               .+..+   .+.+.+..+++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~   76 (432)
T PRK10406         14 SSDTRRRIWAIVGASSGNLVEWFDFYVYSFCS--LYFAHIFFPSG---------------NTTTQLLQTAGVFAAGFLMR   76 (432)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCCC---------------CchHHHHHHHHHHHHHHHHH
Confidence            33444455455566677888899999987554  77888876310               13333   334445566677


Q ss_pred             HHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhhhhhhhhhh--hccccc-c
Q 027462          104 LIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIY--------MLIFGRVLLGVGIGFTNQCRY--ISQKWH-H  172 (223)
Q Consensus       104 ~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~--------~l~v~r~l~G~g~g~~~~~~~--~~~~~~-~  172 (223)
                      .+++++.|++.||+|||+++..+.+++.++.+++++++++.        .+++.|+++|++.|...+...  +++.++ +
T Consensus        77 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~  156 (432)
T PRK10406         77 PIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG  156 (432)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC
Confidence            79999999999999999999999999999999999887753        588999999999998877643  555553 3


Q ss_pred             cccccccchhhhcccCccchhhhh---hhccCCCCCcccccchhhhhhhhh
Q 027462          173 QNTEEHSPLASKYVLPLVSYPLIF---SITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      +|+++.+....+..+|.++++...   ....+..    .....+||+.|.+
T Consensus       157 ~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~----~~~~~gWr~~F~i  203 (432)
T PRK10406        157 RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDA----ELREWGWRIPFAL  203 (432)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH----HHhccchHHHHHH
Confidence            477776666666555555544321   2222110    0112478888865

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.55  E-value=6.4e-14  Score=125.31  Aligned_cols=176  Identities=29%  Similarity=0.382  Sum_probs=131.5

Q ss_pred             CCCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHH
Q 027462           26 NGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLI  105 (223)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~  105 (223)
                      .++..++.+..++++.++.+++++|...++...  |...+++.-.          ...+-+.+..+.+++.+.+.++..+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i   86 (481)
T TIGR00879        19 LGSTYWKVALLSLIAAIGGLMFGYDTGVIGGAL--ALPAFEFKFT----------SANSDSYSSSLWGLVVSIFLVGGFI   86 (481)
T ss_pred             CCcccHHHHHHHHHHHHHHHhcccccchhhhhh--hcHHHHHhcC----------CcccCCCChhHHHHHHHHHHHHHHH
Confidence            344556666667777778888999998887665  4444444210          0011124689999999999999999


Q ss_pred             HHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-ccccccc
Q 027462          106 ASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHS  179 (223)
Q Consensus       106 ~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~  179 (223)
                      +.++.|++.||+|||++++++.++..++.+++.+.   .+++.+++.|++.|++.+...+...  ..+.+++ +|+++.+
T Consensus        87 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~  166 (481)
T TIGR00879        87 GALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTS  166 (481)
T ss_pred             HHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhh
Confidence            99999999999999999999999999888887554   3455889999999999988777543  6666654 4999999


Q ss_pred             chhhhcccCccchhhhh-hhccCCCCCcccccchhhhhhhhh
Q 027462          180 PLASKYVLPLVSYPLIF-SITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       180 ~~~~~~~~~~~~~~~~~-~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      .......+|.++++.+. ..       +......+|||.+.+
T Consensus       167 ~~~~~~~~G~~~~~~~~~~~-------~~~~~~~~w~~~f~~  201 (481)
T TIGR00879       167 LYQLAITFGILVAYGFGSGK-------VSLNNTLGWRIPLGL  201 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-------hcCCCCccHHHHHHH
Confidence            99999999999998876 11       111123578888765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.54  E-value=3.2e-14  Score=137.01  Aligned_cols=171  Identities=15%  Similarity=0.162  Sum_probs=137.5

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHh
Q 027462           30 TVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLF  109 (223)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~  109 (223)
                      .+..+.+.++++++.+..+++..+++.+  +|.+.++++                  ++..+.+++.+++.++.++++++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~i--lp~i~~~~g------------------ls~~~~g~l~s~~~lG~iiG~li  221 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFV--LPSAEKDLC------------------IPDSGKGMLGLIVYLGMMVGAFF  221 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666777788888889998877655  477777764                  68899999999999999999999


Q ss_pred             HHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccccc-ccccccchhhhcc
Q 027462          110 ASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYV  186 (223)
Q Consensus       110 ~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~  186 (223)
                      +|+++||+|||++++++.++..++.+++++++++.+++++|++.|++.|...+...  +++.+..+ |++..+.+...+.
T Consensus       222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~  301 (742)
T TIGR01299       222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM  301 (742)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998877654  66666554 8889999999999


Q ss_pred             cCccchhhhhhhccCC-CCC---cccccchhhhhhhhh
Q 027462          187 LPLVSYPLIFSITAPK-RSR---GAGAGESPWQWLLLL  220 (223)
Q Consensus       187 ~~~~~~~~~~~~~~p~-~~r---g~~~~~~~~~~~~~l  220 (223)
                      +|.++++.+..-+.|. .++   +......+|||.+.+
T Consensus       302 iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i  339 (742)
T TIGR01299       302 IGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIV  339 (742)
T ss_pred             HHHHHHHHHHHHHHHhccchhccccccccccHHHHHHH
Confidence            9988887765444442 111   223344679998765

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.53  E-value=1.5e-13  Score=126.05  Aligned_cols=153  Identities=25%  Similarity=0.424  Sum_probs=125.0

Q ss_pred             CCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHH
Q 027462           27 GKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIA  106 (223)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~  106 (223)
                      ++..++..+.++.++++++-+||+.+.++..   .+..++|.++.+.+.+..+...+.   -+...+.+.+++.+|.++|
T Consensus         3 ~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~~s~~~---~~~lwS~~vs~f~iG~~~G   76 (485)
T KOG0569|consen    3 PKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLPLSDST---LDLLWSLIVSIFFIGGMIG   76 (485)
T ss_pred             CCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHHHHHHHH
Confidence            4567778888888888899999999997544   677888877776655421111111   2335577899999999999


Q ss_pred             HHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhh
Q 027462          107 SLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLAS  183 (223)
Q Consensus       107 ~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (223)
                      +++.++++||+|||..++++.++..++.++..++   +++.+++++|++.|+..|.....                    
T Consensus        77 s~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~--------------------  136 (485)
T KOG0569|consen   77 SFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGL--------------------  136 (485)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHH--------------------
Confidence            9999999999999999999999998888777665   78899999999999999999999                    


Q ss_pred             hcccCccchhhhhhhccCCCCCcccccchh
Q 027462          184 KYVLPLVSYPLIFSITAPKRSRGAGAGESP  213 (223)
Q Consensus       184 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~  213 (223)
                              .|.+..|..|++.||..-.+.+
T Consensus       137 --------~pmyl~E~sP~~~RG~~g~~~~  158 (485)
T KOG0569|consen  137 --------VPMYLTEISPKNLRGALGTLLQ  158 (485)
T ss_pred             --------HHHHHhhcChhhhccHHHHHHH
Confidence                    9999999999999999877643

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.52  E-value=5.2e-14  Score=126.90  Aligned_cols=162  Identities=13%  Similarity=0.037  Sum_probs=129.6

Q ss_pred             HHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHh
Q 027462           36 SCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTR  115 (223)
Q Consensus        36 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~d  115 (223)
                      ...+..+..++..+|....+...  |.+.++++                  +++++.+++.+.+.++..+++++.|++.|
T Consensus         9 ~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~~------------------~s~~~~g~~~s~~~~~~~~~~~~~g~l~d   68 (412)
T TIGR02332         9 LIIFLFILFIFSFLDRINIGFAG--LTMGKDLG------------------LSATMFGLAATLFYAAYVICGIPSNIMLA   68 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHH--HhhHhhcC------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34445555566777777776443  66666664                  79999999999999999999999999999


Q ss_pred             hhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccch
Q 027462          116 AFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSY  192 (223)
Q Consensus       116 r~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~  192 (223)
                      |+|||+++..+.++..++.++.++++++.++++.|++.|++.+...+...  .++.+++ +|+++.+.+...+++|.+++
T Consensus        69 r~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~  148 (412)
T TIGR02332        69 IIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALG  148 (412)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998776543  5666665 49999999999999999988


Q ss_pred             hhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          193 PLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       193 ~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      +.+..-..+.+  + ..+..+|||.|.+
T Consensus       149 ~~~~~~l~~~~--~-~~~~~gwr~~f~~  173 (412)
T TIGR02332       149 LILSGYILALD--G-LMALKGWQWLFLL  173 (412)
T ss_pred             HHHHHHHHhCC--C-CCCccchhHHHHH
Confidence            88765443210  0 1223579998865

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.52  E-value=1e-13  Score=122.18  Aligned_cols=161  Identities=21%  Similarity=0.314  Sum_probs=127.6

Q ss_pred             HHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHh
Q 027462           33 VVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFAST  112 (223)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~  112 (223)
                      ++.....+.++.+..+++....+...  |.+.++++                  +++.+.+++.+.+.++..++.++.|+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~------------------~s~~~~g~~~~~~~~~~~~~~~~~G~   69 (405)
T TIGR00891        10 QWNAFSAAWLGWLLDAFDFFLVALVL--AEVAGEFG------------------LTTVDAASLISAALISRWFGALMFGL   69 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhC------------------CChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555666777788887776554  77777774                  68999999999999999999999999


Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccc-ccccccccchhhhcccCc
Q 027462          113 VTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWH-HQNTEEHSPLASKYVLPL  189 (223)
Q Consensus       113 l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~  189 (223)
                      +.||+|||++++++.++..++.++.++++++..+++.|++.|++.+...+...  ..+.++ ++|+++.+.....+.+|.
T Consensus        70 l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~  149 (405)
T TIGR00891        70 WGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGA  149 (405)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888776543  555554 458999999999999999


Q ss_pred             cchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          190 VSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       190 ~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      ++++.+..-....  .+     .+||+.+.+
T Consensus       150 ~~~~~l~~~l~~~--~~-----~~w~~~f~~  173 (405)
T TIGR00891       150 VVAAQVYSLVVPV--WG-----DGWRALFFI  173 (405)
T ss_pred             HHHHHHHHHHHHh--cC-----ccHHHHHHH
Confidence            8888765544321  00     247777654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.51  E-value=1.3e-13  Score=122.67  Aligned_cols=125  Identities=14%  Similarity=0.079  Sum_probs=106.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      .++++.+++.+.+.++..++.++.|++.||+|||+++..+.++..++.+.+++++++.++++.|++.|++.+...+... 
T Consensus        41 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~  120 (390)
T PRK03545         41 MQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITAS  120 (390)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999999999999999999999998887665433 


Q ss_pred             -hccccc-ccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          166 -ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       166 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                       .++.++ +||+++++....+..+|.+++|.+..-...         ..+|||.|.+
T Consensus       121 ~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~---------~~gw~~~f~~  168 (390)
T PRK03545        121 LAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ---------YLGWRTTFLA  168 (390)
T ss_pred             HHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH---------HhcHHHHHHH
Confidence             555554 469999999999999999988876544332         3478887765

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.51  E-value=7.8e-14  Score=127.51  Aligned_cols=144  Identities=11%  Similarity=-0.047  Sum_probs=115.4

Q ss_pred             HHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHh
Q 027462           33 VVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFAST  112 (223)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~  112 (223)
                      .+.......+++++...+...++..  .|.+.++++                  ++.++.+++.+.+.+++.++.++.|+
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~--~~~i~~~~~------------------~s~~~~g~~~s~~~~~~~~~~~~~G~   86 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAA--QNDMISTYG------------------LSTTELGMIGLGFSITYGVGKTLVGY   86 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhh--hHHHHHhcC------------------CCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4445555566666666677777644  488888875                  68999999999999999999999999


Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhh
Q 027462          113 VTRAFGRKASILVGGTAFLAGSAIGGA-----ALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASK  184 (223)
Q Consensus       113 l~dr~Grk~~~~~~~l~~~~~~l~~~~-----a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~  184 (223)
                      +.||+|||+++.++.++..+..++.++     ++++..+++.|++.|++.+...+...  .++.+++ +|+++.+....+
T Consensus        87 l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~  166 (467)
T PRK09556         87 YADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNIS  166 (467)
T ss_pred             HhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecc
Confidence            999999999998888777766655544     58899999999999998887666543  6666655 599999999999


Q ss_pred             cccCccchhhhh
Q 027462          185 YVLPLVSYPLIF  196 (223)
Q Consensus       185 ~~~~~~~~~~~~  196 (223)
                      ..+|.++++.+.
T Consensus       167 ~~lG~~l~~~i~  178 (467)
T PRK09556        167 HNLGGAGAGGVA  178 (467)
T ss_pred             cchhhhHHHHHH
Confidence            999999887754

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.51  E-value=1.5e-13  Score=123.15  Aligned_cols=154  Identities=18%  Similarity=0.278  Sum_probs=124.3

Q ss_pred             HHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh
Q 027462           38 IVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAF  117 (223)
Q Consensus        38 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~  117 (223)
                      +...++.+..+++.....+.  +|.+.++++                  +++.+.+++.+.+.++..+++++.|++.||+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~------------------~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~   80 (426)
T PRK12307         21 FSAWLGYVFDGFDFMLIFYI--MYLIKADLG------------------LTDMEGAFLATAAFIGRPFGGALFGLLADKF   80 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHH--HHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445556667777666544  377777764                  6899999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccccc-ccccccchhhhcccCccchhh
Q 027462          118 GRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPL  194 (223)
Q Consensus       118 Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  194 (223)
                      |||+++.++.++..++.++.++++++..++++|++.|++.+...+...  ..+.++++ |+++.+....++++|.++++.
T Consensus        81 g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~  160 (426)
T PRK12307         81 GRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY  160 (426)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHH
Confidence            999999999999999999999999999999999999999887766543  56666554 899999999999999998876


Q ss_pred             hhhhccCCCCCcccccchhhhhhhhh
Q 027462          195 IFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       195 ~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      +......         ..+||+.+.+
T Consensus       161 l~~~l~~---------~~~w~~~f~i  177 (426)
T PRK12307        161 FMPSFAE---------AYGWRAAFFV  177 (426)
T ss_pred             HHHHHcc---------cCCHHHHHHH
Confidence            5544332         2368887654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.49  E-value=2.6e-13  Score=124.99  Aligned_cols=162  Identities=17%  Similarity=0.180  Sum_probs=119.2

Q ss_pred             HHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCCh--hHHHH--HHHHHHHHHHHHHHhHHh
Q 027462           37 CIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDS--QLLAA--FTSSLYISGLIASLFAST  112 (223)
Q Consensus        37 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~--~~s~~~lg~~~~~~~~g~  112 (223)
                      .+...++.++.+||..+++...  |.+.++|++..                ++  ...+.  +.+..+++..+++++.|+
T Consensus        18 ~~~~~~g~~~~~~d~~~~~~~~--~~i~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~~ig~~~~G~   79 (490)
T PRK10642         18 ITAASLGNAMEWFDFGVYGFVA--YALGKVFFPGA----------------DPSVQMIAALATFSVPFLIRPLGGLFFGM   79 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCCC----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455678889999999987554  77777776421                22  11222  257788999999999999


Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHH--------HHHHHHHHhhhhhhhhhhhh--hccccc-ccccccccch
Q 027462          113 VTRAFGRKASILVGGTAFLAGSAIGGAALNIYM--------LIFGRVLLGVGIGFTNQCRY--ISQKWH-HQNTEEHSPL  181 (223)
Q Consensus       113 l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~--------l~v~r~l~G~g~g~~~~~~~--~~~~~~-~~~~~~~~~~  181 (223)
                      +.||+|||+++.++.+++.++.+++++++++..        +++.|+++|++.|...+...  ..+.++ ++|+++.+..
T Consensus        80 l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~  159 (490)
T PRK10642         80 LGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWL  159 (490)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHH
Confidence            999999999999999999999999999998864        78999999999999888643  666664 4588888888


Q ss_pred             hhhcccCccchhhhhh---hccCCCCCcccccchhhhhhhhh
Q 027462          182 ASKYVLPLVSYPLIFS---ITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       182 ~~~~~~~~~~~~~~~~---~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      ..++.+|.++++.+..   ...+..    .....+|||.|.+
T Consensus       160 ~~~~~~G~~lg~~~~~~~~~~~~~~----~~~~~gWR~~f~i  197 (490)
T PRK10642        160 DFGSIAGFVLGAGVVVLISTIVGEA----NFLDWGWRIPFFI  197 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHH----HhcCccHHHHHHH
Confidence            7777777776654332   122211    0112479998875

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.48  E-value=3.1e-13  Score=120.47  Aligned_cols=146  Identities=18%  Similarity=0.127  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHH
Q 027462           32 FVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFAS  111 (223)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g  111 (223)
                      +.+...++.....+++++|....+...  |.+.++++                  +++++.+++.+...++..++.++.|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~s~~~~g~~~~~~~~~~~~~~~~~g   71 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAA--PRMAQEFG------------------LDVAQMGWAFSAGILGLLPGALLGG   71 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445455666667778888887776554  78877774                  6899999999999999999999999


Q ss_pred             hHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccc-ccccccccchhhhcccC
Q 027462          112 TVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWH-HQNTEEHSPLASKYVLP  188 (223)
Q Consensus       112 ~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~  188 (223)
                      ++.||+|||+++..+.++..++.+++++++++..+++.|++.|++.+...+...  ..+.++ ++|+++.+.......+|
T Consensus        72 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  151 (406)
T PRK11551         72 RLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG  151 (406)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988888888999999999999999999887766542  555564 45888999988888888


Q ss_pred             ccchhhhhh
Q 027462          189 LVSYPLIFS  197 (223)
Q Consensus       189 ~~~~~~~~~  197 (223)
                      ..+++.+..
T Consensus       152 ~~~~~~~~~  160 (406)
T PRK11551        152 GALASVIGV  160 (406)
T ss_pred             HHHHHHHHH
Confidence            888876543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.48  E-value=2.9e-13  Score=121.17  Aligned_cols=121  Identities=12%  Similarity=0.044  Sum_probs=103.6

Q ss_pred             cCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH
Q 027462           58 TSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG  137 (223)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~  137 (223)
                      ..+|.+.++++                  ++..+.+++.+.+.++..+++++.|++.||+|||+++..+..+..++.+++
T Consensus        30 ~~lp~i~~~~~------------------~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~   91 (393)
T PRK09705         30 PLLPQLRQASG------------------MSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMR   91 (393)
T ss_pred             hhHHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            33588888875                  799999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccccccccccchhhhcccCccchhhhh
Q 027462          138 GAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIF  196 (223)
Q Consensus       138 ~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (223)
                      +++++++.+++.|+++|++.+...+...  .++.+++||+++++...+.-.+|..+++.+.
T Consensus        92 ~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~  152 (393)
T PRK09705         92 ELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAIT  152 (393)
T ss_pred             HHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998766544  5566677789999988776655555555443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.46  E-value=4.4e-13  Score=122.62  Aligned_cols=159  Identities=19%  Similarity=0.329  Sum_probs=127.9

Q ss_pred             HHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHh
Q 027462           33 VVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFAST  112 (223)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~  112 (223)
                      .+.....+.++.++.+++....++.  +|.+.++++                  +++.+.+++.+.+.++..++.++.|+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~------------------~s~~~~~~~~~~~~~~~~~~~~~~g~   77 (496)
T PRK03893         18 QWKAFSAAWLGYLLDGFDFVLITLV--LTEVQGEFG------------------LTTVQAASLISAAFISRWFGGLLLGA   77 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334555666667778888776544  377777764                  68999999999999999999999999


Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCc
Q 027462          113 VTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPL  189 (223)
Q Consensus       113 l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~  189 (223)
                      +.||+|||+.++++.++..++.++.++++++..+++.|++.|++.+...+...  ..+.+++ +|+++++.....+.+|.
T Consensus        78 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  157 (496)
T PRK03893         78 MGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGA  157 (496)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998887666543  5566655 48999999999999999


Q ss_pred             cchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          190 VSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       190 ~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      +++|.+..-+.+         ..+|||.+.+
T Consensus       158 ~~~~~~~~~l~~---------~~~w~~~f~~  179 (496)
T PRK03893        158 VVAAQVYSLVVP---------VWGWRALFFI  179 (496)
T ss_pred             HHHHHHHHHHhc---------cCCHHHHHHH
Confidence            988876665543         2468877654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.44  E-value=1.6e-13  Score=124.81  Aligned_cols=155  Identities=17%  Similarity=0.250  Sum_probs=126.1

Q ss_pred             HHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 027462           37 CIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRA  116 (223)
Q Consensus        37 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr  116 (223)
                      ...+.++.++..+|..+.+..  +|.+.++++                  .+..+.+|+.+.+.++..++.++.|++.||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~g------------------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr   63 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVA--IPTIAGDLG------------------SSLSQVQWVITSYMLANAISIPLTGWLAKR   63 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHhcC------------------CChhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence            344555667778888877644  488877775                  588899999999999999999999999999


Q ss_pred             hchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchh
Q 027462          117 FGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYP  193 (223)
Q Consensus       117 ~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  193 (223)
                      +|||+.++++.++..++.++++.++++..+++.|+++|++.+...+...  ..+.+++ +|.++++.......+|..++|
T Consensus        64 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  143 (485)
T TIGR00711        64 FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGP  143 (485)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999999999999999999888776543  6666654 589999999999989888888


Q ss_pred             hhhhhccCCCCCcccccchhhhhhhhh
Q 027462          194 LIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       194 ~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      .+..-+..         ..+|||.+.+
T Consensus       144 ~~~~~l~~---------~~~w~~~f~~  161 (485)
T TIGR00711       144 TLGGWIIE---------NYHWRWIFLI  161 (485)
T ss_pred             ccHhHhcc---------CcCceehhhh
Confidence            76554433         2357766544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.44  E-value=1.1e-12  Score=117.52  Aligned_cols=125  Identities=14%  Similarity=0.124  Sum_probs=107.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      +++++.++..+...++..++.++.|++.||+|||+.++.+.++..++.++++++++++.+++.|++.|++.+...+... 
T Consensus        52 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  131 (394)
T PRK10213         52 ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSAS  131 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999988766543 


Q ss_pred             -hcccccc-cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                       .++.+++ +|+++.+......++|.+++|.+..-+.+         ..+|||.|.+
T Consensus       132 ~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~---------~~gw~~~f~~  179 (394)
T PRK10213        132 LTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE---------LIGWRNVFNA  179 (394)
T ss_pred             HHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hcCHHHHHHH
Confidence             5566644 58999999999999999888887665543         2468887764

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.43  E-value=4.4e-13  Score=120.95  Aligned_cols=156  Identities=13%  Similarity=0.193  Sum_probs=121.4

Q ss_pred             HHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHh
Q 027462           36 SCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTR  115 (223)
Q Consensus        36 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~d  115 (223)
                      .+....+..+....+..++.  .++|.+.++++                  .+..+.++..+.+.++..++.++.|++.|
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~--p~l~~i~~~~~------------------~~~~~~~~~~s~~~~~~~~~~~~~G~l~d   76 (413)
T PRK15403         17 FPMALILYDFAAYLTTDLIQ--PGIINVVRDFN------------------ADVSLAPASVSLYLAGGMALQWLLGPLSD   76 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhhc--cCHHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            34444555555566666664  34577777775                  58899999999999999999999999999


Q ss_pred             hhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccch
Q 027462          116 AFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSY  192 (223)
Q Consensus       116 r~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~  192 (223)
                      |+|||++++.+.++..++.+++++++++..+++.|+++|++.+...+..+  ..+.+++ +++++++.......+|.+++
T Consensus        77 r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  156 (413)
T PRK15403         77 RIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIG  156 (413)
T ss_pred             HcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998876444333  4445544 47888998888888888888


Q ss_pred             hhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          193 PLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       193 ~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      |.+..-+..         ..+|||.|.+
T Consensus       157 ~~lg~~l~~---------~~gw~~~f~~  175 (413)
T PRK15403        157 PLSGAALMH---------FVHWKVLFAI  175 (413)
T ss_pred             HHHHHHHHH---------hcCHHHHHHH
Confidence            775543321         2468888765

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.43  E-value=4.3e-13  Score=120.97  Aligned_cols=156  Identities=18%  Similarity=0.173  Sum_probs=119.7

Q ss_pred             CccCCCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHH
Q 027462           23 RYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIS  102 (223)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg  102 (223)
                      ++.....+|+.+...+++.++.+.++||....+..+  |-+...|....        ...  -++++...+.+..+..+|
T Consensus        29 ~~~~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt--~il~~lY~~~~--------~~~--g~~ps~i~~~Vn~~A~vG   96 (538)
T KOG0252|consen   29 TRTSEGLQWKHFKAIIIAGMGFFTDSYDLFSISLVT--KILGYLYYHGD--------ESG--GHYPSGVLALVNAAALVG   96 (538)
T ss_pred             hccccchhHHHHHHHHHhhhhhcccchhhhhHHHHH--HHHHHHhcCCC--------CCC--CcCCchHHHHHHHHHHHH
Confidence            344556689999999999999999999999988665  44444443211        001  235777888899999999


Q ss_pred             HHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-
Q 027462          103 GLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL-------NIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-  172 (223)
Q Consensus       103 ~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~-------~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-  172 (223)
                      .++|+++.|++.|++|||+++...++++++++++++++.       -..++++.|++.|+|.|+-+|+.+  .|....+ 
T Consensus        97 ti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~  176 (538)
T KOG0252|consen   97 TIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKK  176 (538)
T ss_pred             HHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhc
Confidence            999999999999999999999999999999999888762       136889999999999999999855  5666644 


Q ss_pred             cccccccchhhhcccCcc
Q 027462          173 QNTEEHSPLASKYVLPLV  190 (223)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~  190 (223)
                      ||+..++.+-+--+.|.+
T Consensus       177 ~RGa~iaavFa~Qg~Gil  194 (538)
T KOG0252|consen  177 TRGAFIAAVFAMQGFGIL  194 (538)
T ss_pred             cccceeEEEEEecchhHh
Confidence            366666665554444433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.43  E-value=3.8e-13  Score=119.65  Aligned_cols=151  Identities=15%  Similarity=0.123  Sum_probs=119.8

Q ss_pred             HhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh
Q 027462           41 ATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK  120 (223)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk  120 (223)
                      ....+..++......+.  +|.+.++++                  ++.++.+++.+.+.++..+++++.|++.||+|||
T Consensus         9 ~~~~~~~~~~~~~~~~~--l~~~~~~~g------------------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r   68 (382)
T PRK10091          9 ALGTFGLGMAEFGIMGV--LTELAHDVG------------------ISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK   68 (382)
T ss_pred             HHHHHHHHhhHHHHHhC--hHHHHHHcC------------------CCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence            33445556666555544  378888775                  6899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhh
Q 027462          121 ASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFS  197 (223)
Q Consensus       121 ~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  197 (223)
                      +++.++.++..++.++++++++++.+++.|++.|++.+...+...  .++.+++ ||+++++....+..+|..++|.+..
T Consensus        69 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~  148 (382)
T PRK10091         69 HILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGT  148 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHH
Confidence            999999999999999999999999999999999999887665433  5555544 4888899888888888887776544


Q ss_pred             hccCCCCCcccccchhhhhhhhh
Q 027462          198 ITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       198 ~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      -...         ..+|||.+.+
T Consensus       149 ~l~~---------~~gwr~~f~~  162 (382)
T PRK10091        149 YLSQ---------EFSWRYTFLL  162 (382)
T ss_pred             HHhh---------hccHHHHHHH
Confidence            3322         2468887765

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.42  E-value=5.5e-13  Score=115.97  Aligned_cols=125  Identities=13%  Similarity=0.125  Sum_probs=104.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      +++++.+++.+.+.++..++.++.|++.||+|||+++.++.++..++.+.+++++++..+++.|++.|++.+...+... 
T Consensus        35 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  114 (377)
T TIGR00890        35 VGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALN  114 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999887654432 


Q ss_pred             -hcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          166 -ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       166 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                       ..+.++++|+++.+....+.++|.++.+.+...+..         ..+|||.+.+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~f~~  161 (377)
T TIGR00890       115 TAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVIN---------LEGVPAAFIY  161 (377)
T ss_pred             HHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHh---------cccHHHHHHH
Confidence             444456679999999999999998866554443332         2368877654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.41  E-value=1.2e-12  Score=118.51  Aligned_cols=154  Identities=12%  Similarity=0.105  Sum_probs=121.3

Q ss_pred             HHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh
Q 027462           38 IVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAF  117 (223)
Q Consensus        38 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~  117 (223)
                      ....++.++..++...++..  +|.+.++++                  +++++.+++.+.+.++..++.++.|++.||+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g------------------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~   85 (434)
T PRK11663         26 ITMYLGYALFYFTRKSFNAA--MPEMLADLG------------------LSRSDIGLLATLFYITYGVSKFVSGIVSDRS   85 (434)
T ss_pred             HHHHHHHHHHHHhhhhHHHh--hHHHHHhcC------------------CCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc
Confidence            33444455555555444433  477777764                  6899999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhh
Q 027462          118 GRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPL  194 (223)
Q Consensus       118 Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  194 (223)
                      |||+++.++.++..++.++.++++++..+++.|++.|++.|...+...  ..+.+++ +|+++++.......+|.+++|.
T Consensus        86 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~  165 (434)
T PRK11663         86 NARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPL  165 (434)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998887655433  5555554 5999999999999999998887


Q ss_pred             hhhhccCCCCCcccccchhhhhhhhh
Q 027462          195 IFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       195 ~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      +..-+.+         ..+|||.+.+
T Consensus       166 ~~~~l~~---------~~gw~~~f~~  182 (434)
T PRK11663        166 VVGAIAL---------HYGWRYGMMI  182 (434)
T ss_pred             HHHHHHH---------cccHHHHHHH
Confidence            6655443         2468877654

>PRK10133 L-fucose transporter; Provisional

Probab=99.39  E-value=2.5e-12  Score=117.15  Aligned_cols=139  Identities=12%  Similarity=0.167  Sum_probs=111.3

Q ss_pred             HHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc
Q 027462           39 VAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFG  118 (223)
Q Consensus        39 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G  118 (223)
                      ...+..++.+++....+..  .|.++++++                  +++.+.+++.+.+.++..+++++.|++.||+|
T Consensus        30 ~~~~~~~~~~~~~~~~~~~--~p~i~~~~~------------------~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G   89 (438)
T PRK10133         30 LLCSLFFLWAVANNLNDIL--LPQFQQAFT------------------LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS   89 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3444556667776666544  377777774                  69999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccccc-ccccccchhhhcccCccch
Q 027462          119 RKASILVGGTAFLAGSAIG---GAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSY  192 (223)
Q Consensus       119 rk~~~~~~~l~~~~~~l~~---~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~  192 (223)
                      ||+++..+.+++.++.+++   +.++++..++++|+++|+|.|...+..+  ..+..+++ |....+..+..+++|..++
T Consensus        90 ~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g  169 (438)
T PRK10133         90 YKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIA  169 (438)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998775   4678999999999999999998877654  33323333 4446888899999999988


Q ss_pred             hhhhh
Q 027462          193 PLIFS  197 (223)
Q Consensus       193 ~~~~~  197 (223)
                      |.+..
T Consensus       170 ~~~g~  174 (438)
T PRK10133        170 VVFGQ  174 (438)
T ss_pred             HHHHH
Confidence            87654

>PRK09952 shikimate transporter; Provisional

Probab=99.39  E-value=4e-12  Score=115.51  Aligned_cols=162  Identities=14%  Similarity=0.176  Sum_probs=114.8

Q ss_pred             HHHHHHhhhhhhhhhccccccccCcHH-HHHhhcchhhhhcccccccccccCCChhHHHHHH-----HHHHHHHHHHHHh
Q 027462           36 SCIVAATGGLIFGFDIGISGGVTSMEP-FLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFT-----SSLYISGLIASLF  109 (223)
Q Consensus        36 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-----s~~~lg~~~~~~~  109 (223)
                      ......++.++..||..+++.+.  |. +.+++++.                .++. .+++.     +..+++..+++++
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~g~~~   83 (438)
T PRK09952         23 AALGSFAGAVVDWYDFLLYGITA--ALVFNREFFPQ----------------VSPA-MGTLAAFATFGVGFLFRPLGGVV   83 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCC----------------CCcH-HHHHHHHHHHHHHHHHHhhHHHH
Confidence            34555667788899998876442  33 33444321                2343 34433     3455677899999


Q ss_pred             HHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccc
Q 027462          110 ASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIY--------MLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEH  178 (223)
Q Consensus       110 ~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~--------~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~  178 (223)
                      .|++.||+|||++++++.+++.++.+++++++++.        .+++.|+++|++.|...+...  .++.+++ +|++..
T Consensus        84 ~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~  163 (438)
T PRK09952         84 FGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYS  163 (438)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHH
Confidence            99999999999999999999999999999998876        588899999999998877543  5665644 488888


Q ss_pred             cchhhhcccCccchhhhhh---hccCCCCCcccccchhhhhhhhh
Q 027462          179 SPLASKYVLPLVSYPLIFS---ITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~---~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      +....++.+|.+++..+..   ...+.+    .....+||+.|.+
T Consensus       164 ~~~~~g~~~G~~l~~~~~~~l~~~~~~~----~~~~~gWr~~f~~  204 (438)
T PRK09952        164 SGVQVGYGVGLLLSTGLVSLISMMTTDE----QFLSWGWRIPFLF  204 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHH----HhhccChHHHHHH
Confidence            8888888888887765433   222211    1122479888764

>PRK10504 putative transporter; Provisional

Probab=99.38  E-value=1.3e-12  Score=118.90  Aligned_cols=150  Identities=13%  Similarity=0.152  Sum_probs=121.0

Q ss_pred             hhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhH
Q 027462           42 TGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKA  121 (223)
Q Consensus        42 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~  121 (223)
                      .+.++..++...+++  .+|.+.++++                  .++.+.+++.+.+.++..++.++.|++.||+|||+
T Consensus        17 ~~~~~~~~~~~~~~~--~~p~~~~~~g------------------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~   76 (471)
T PRK10504         17 FGFFMQSLDTTIVNT--ALPSMAQSLG------------------ESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRN   76 (471)
T ss_pred             HHHHHHHHhHHHHHH--HHHHHHHHhC------------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            344556666666553  3588887764                  68999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhhh
Q 027462          122 SILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSI  198 (223)
Q Consensus       122 ~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (223)
                      +++.+.++..++.+.++++++++.+++.|+++|++.+...+...  ..+.+++ +|.++++.+.....+|.+++|.+...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~  156 (471)
T PRK10504         77 IFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL  156 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999988888888889999999999999999988776543  5555554 47889999998888999888887655


Q ss_pred             ccCCCCCcccccchhhhhhhhh
Q 027462          199 TAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       199 ~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      +..         ..+|||.|.+
T Consensus       157 l~~---------~~gw~~~f~~  169 (471)
T PRK10504        157 LVE---------YASWHWIFLI  169 (471)
T ss_pred             HHh---------hccHHHHHHH
Confidence            543         2368888765

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.37  E-value=1.2e-14  Score=131.45  Aligned_cols=146  Identities=27%  Similarity=0.457  Sum_probs=104.9

Q ss_pred             HHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc
Q 027462           39 VAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFG  118 (223)
Q Consensus        39 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G  118 (223)
                      +.+++.+.+|||.+.++...........+..+   +..      .+++.++.+.+++.+...+|..+|+++.|++.||+|
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~G   74 (451)
T PF00083_consen    4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWS---SSE------SSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYG   74 (451)
T ss_pred             eeHHHHHHHHHHHHHHhhHHhhhhhhhccccc---ccc------ccccchHHHHHHHHHHHHhhhccccccccccccccc
Confidence            35566788999999987666444433333211   110      001114567899999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHhhhhhhhhhhhh--hccccccc-ccccccchhhhcccCccch
Q 027462          119 RKASILVGGTAFLAGSAIGGAAL---NIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSY  192 (223)
Q Consensus       119 rk~~~~~~~l~~~~~~l~~~~a~---~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~  192 (223)
                      ||+.++++.++..++.++.++++   ++..++++|++.|++.|.......  ..+..+++ |++..+.....+.+|.+++
T Consensus        75 Rk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~  154 (451)
T PF00083_consen   75 RKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLA  154 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999   999999999999999999888721  33333222 4444444444444444444


Q ss_pred             h
Q 027462          193 P  193 (223)
Q Consensus       193 ~  193 (223)
                      .
T Consensus       155 ~  155 (451)
T PF00083_consen  155 S  155 (451)
T ss_pred             c
Confidence            3

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK03699 putative transporter; Provisional

Probab=99.37  E-value=5.2e-12  Score=112.79  Aligned_cols=153  Identities=15%  Similarity=0.166  Sum_probs=119.8

Q ss_pred             HHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhch
Q 027462           40 AATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGR  119 (223)
Q Consensus        40 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Gr  119 (223)
                      ..++.++.+.+...++.+.  |++.++++                  ++.++.+++.+.+.++..++.++.|++.||+||
T Consensus        12 ~~~~~~~~~~~~~~~g~~~--~~i~~~~~------------------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~   71 (394)
T PRK03699         12 SFLSYALTGALVIVTGMVM--GPIAEYFN------------------LPVSSMSNTFTFLNAGILISIFLNAWLMEIIPL   71 (394)
T ss_pred             HHHHHHHHHHHHHHHhhhh--HHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            3444556666666665443  78887774                  699999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhh
Q 027462          120 KASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIF  196 (223)
Q Consensus       120 k~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  196 (223)
                      |+++..+.++..++.++.++++++..+++.|++.|++.|...+...  ..+.+++ +|..+.+.....+++|.+++|.+.
T Consensus        72 r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  151 (394)
T PRK03699         72 KRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA  151 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998887665433  5566655 478888888788888888787765


Q ss_pred             hhccCCCCCcccccchhhhhhhhh
Q 027462          197 SITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       197 ~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      .-....        ..+||+.+.+
T Consensus       152 ~~l~~~--------~~gw~~~f~~  167 (394)
T PRK03699        152 AYLLAR--------SIEWYWVYAC  167 (394)
T ss_pred             HHHHhc--------cccHHHHHHH
Confidence            443321        1368877653

>PRK15075 citrate-proton symporter; Provisional

Probab=99.36  E-value=4.8e-12  Score=114.59  Aligned_cols=139  Identities=14%  Similarity=0.191  Sum_probs=99.7

Q ss_pred             HHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHH-HHHHH-----HHHHHHHHHh
Q 027462           36 SCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAA-FTSSL-----YISGLIASLF  109 (223)
Q Consensus        36 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~s~~-----~lg~~~~~~~  109 (223)
                      ......++.++..+|...++...  |.+.++++                  .++.+.++ ..+..     .+...+++++
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~--~~i~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~ig~~~   75 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYA--TAIAKTFF------------------PAGNEFASLMLTFAVFGAGFLMRPLGAIV   75 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhC------------------CCCCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence            35556668899999999987554  88888885                  24444433 22222     2333578899


Q ss_pred             HHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccc
Q 027462          110 ASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIY--------MLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEH  178 (223)
Q Consensus       110 ~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~--------~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~  178 (223)
                      .|++.||+|||+.++.+.++..++.+++++++++.        .+++.|+++|++.|...+...  .++.+++ +|.++.
T Consensus        76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~  155 (434)
T PRK15075         76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT  155 (434)
T ss_pred             HHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence            99999999999999999999999999999998876        468899999999988776522  4444433 366666


Q ss_pred             cchhhhcccCccchhh
Q 027462          179 SPLASKYVLPLVSYPL  194 (223)
Q Consensus       179 ~~~~~~~~~~~~~~~~  194 (223)
                      +.......+|.++++.
T Consensus       156 ~~~~~~~~~g~~~g~~  171 (434)
T PRK15075        156 SWQSASQQVAVVFAAL  171 (434)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666555555544443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.36  E-value=1.1e-11  Score=110.28  Aligned_cols=114  Identities=18%  Similarity=0.164  Sum_probs=91.9

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA--------LNIYMLIFGRVLLGVGI  157 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a--------~~~~~l~v~r~l~G~g~  157 (223)
                      +.++++.+++.+.+.++..+++++.|++.||+|||++++++.++..++.+.+.++        .++..+++.|++.|++.
T Consensus        47 g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  126 (399)
T PRK05122         47 GFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGE  126 (399)
T ss_pred             CccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhH
Confidence            3689999999999999999999999999999999999999998887776655443        24667899999999999


Q ss_pred             hhhhhhhh--hcccc-cccccccccchhhhcccCccchhhhhhhc
Q 027462          158 GFTNQCRY--ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       158 g~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      +...+...  ..+.+ +++|+++.+.......+|.+++|.+..-+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  171 (399)
T PRK05122        127 SLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL  171 (399)
T ss_pred             HhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence            88776543  34445 34588999988888888888777765444

>TIGR00895 2A0115 benzoate transport

Probab=99.36  E-value=5.4e-12  Score=110.66  Aligned_cols=141  Identities=18%  Similarity=0.147  Sum_probs=112.4

Q ss_pred             HhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh
Q 027462           41 ATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK  120 (223)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk  120 (223)
                      .+..+..+++....+..  .|.+.++++                  +++.+.+++.+...++..++.++.|++.||+|||
T Consensus        23 ~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~   82 (398)
T TIGR00895        23 FLIMLMDGYDLAAMGFA--APAISAEWG------------------LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK   82 (398)
T ss_pred             HHHHHHHHHHHHHHHhh--HHHHhhccC------------------CCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH
Confidence            33445555555554433  366666653                  6889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhh
Q 027462          121 ASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFS  197 (223)
Q Consensus       121 ~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  197 (223)
                      +.+..+.++..++.++..++++++.+++.|++.|++.+...+...  ..+.+++ +|+++++.....+.+|..++|.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  162 (398)
T TIGR00895        83 RVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG  162 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence            999999999999988888899999999999999999887776543  5555544 4899999999999998888887665


Q ss_pred             hccC
Q 027462          198 ITAP  201 (223)
Q Consensus       198 ~~~p  201 (223)
                      .+.+
T Consensus       163 ~l~~  166 (398)
T TIGR00895       163 WLIP  166 (398)
T ss_pred             HHhh
Confidence            5543

>PRK12382 putative transporter; Provisional

Probab=99.35  E-value=2.3e-11  Score=108.20  Aligned_cols=113  Identities=15%  Similarity=0.125  Sum_probs=90.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH---h-----hhhhHHHHHHHHHHHhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG---G-----AALNIYMLIFGRVLLGVGI  157 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~---~-----~a~~~~~l~v~r~l~G~g~  157 (223)
                      ++|.++.+++.+.+.++..+++++.|++.||+|||++++.+.++..++.+..   +     ..+++..+++.|+++|++.
T Consensus        47 g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  126 (392)
T PRK12382         47 GFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGE  126 (392)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999999999999999999888776654322   1     1357888999999999998


Q ss_pred             hhhhhhhh--hcccc-cccccccccchhhhcccCccchhhhhhh
Q 027462          158 GFTNQCRY--ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSI  198 (223)
Q Consensus       158 g~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (223)
                      +...+...  ..+.. +++|+++++..+....+|.+++|.+..-
T Consensus       127 ~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~  170 (392)
T PRK12382        127 SQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLL  170 (392)
T ss_pred             HHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence            87665432  33444 4459999999988888888888776543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.35  E-value=2.4e-12  Score=114.85  Aligned_cols=134  Identities=10%  Similarity=-0.019  Sum_probs=102.8

Q ss_pred             cHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh
Q 027462           60 MEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA  139 (223)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~  139 (223)
                      +|.+.++++                  +++++.+++.+.+.+++.++.++.|++.||+|||+++..+.+....+.+....
T Consensus        14 lp~i~~~~~------------------~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~   75 (368)
T TIGR00903        14 LSLVAEDID------------------VSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLD   75 (368)
T ss_pred             HHHHHHHhC------------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            478888775                  69999999999999999999999999999999998876555444444332333


Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhhh-hcccccc-cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhh
Q 027462          140 ALNIYMLIFGRVLLGVGIGFTNQCRY-ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWL  217 (223)
Q Consensus       140 a~~~~~l~v~r~l~G~g~g~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~  217 (223)
                      ++++.++++.|++.|++.+...+... .++.+.+ +|+++.+....+..+|.++++.+..-+.+         ..+||+.
T Consensus        76 ~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~---------~~gWr~~  146 (368)
T TIGR00903        76 PFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT---------AGGLQLL  146 (368)
T ss_pred             hccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------ccchHHH
Confidence            37899999999999999886443322 5555544 59999999999999999988876655543         2478887


Q ss_pred             hhh
Q 027462          218 LLL  220 (223)
Q Consensus       218 ~~l  220 (223)
                      |.+
T Consensus       147 f~~  149 (368)
T TIGR00903       147 IIP  149 (368)
T ss_pred             HHH
Confidence            754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.35  E-value=4.7e-12  Score=116.39  Aligned_cols=108  Identities=11%  Similarity=0.011  Sum_probs=89.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      ++..+.+++.+.+.++..++.++.|++.||+|||+++..+.++..++.++.++++++..+++.|++.|++.+...+... 
T Consensus        68 ls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~  147 (476)
T PLN00028         68 LTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYW  147 (476)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            6899999999999999999999999999999999999999999999888889999999999999999998876443322 


Q ss_pred             hcccccc-cccccccchhhhcccCccchhh
Q 027462          166 ISQKWHH-QNTEEHSPLASKYVLPLVSYPL  194 (223)
Q Consensus       166 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  194 (223)
                      .++.+++ +|+++.+.......+|..+++.
T Consensus       148 i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~  177 (476)
T PLN00028        148 MSTMFNGKIVGTANGIAAGWGNLGGGVTQL  177 (476)
T ss_pred             HHHhcChhheeHHHHHHHHHHHHHHHHHHH
Confidence            5666654 5899999887655555554443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.35  E-value=6.3e-12  Score=111.68  Aligned_cols=140  Identities=18%  Similarity=0.216  Sum_probs=116.1

Q ss_pred             hhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhH
Q 027462           42 TGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKA  121 (223)
Q Consensus        42 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~  121 (223)
                      .+.++.+.+.++.++.  +|.++++++                  .++.+.+++.+.+.++..+++++.|++.||+|||+
T Consensus        13 ~~~~~~~~~~~~~~~~--lp~~~~~~~------------------~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~   72 (381)
T PRK03633         13 CGLLLLTLAIAVLNTL--VPLWLAQEH------------------LPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR   72 (381)
T ss_pred             HHHHHHHHhhhhHHHH--HHHHHHHcC------------------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3445556666666545  488888774                  68999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccc-ccccccccchhhhcccCccchhhhhhh
Q 027462          122 SILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSI  198 (223)
Q Consensus       122 ~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (223)
                      ++..+.++..++.+..+++++++.+++.|++.|++.+...+...  ..+.+. ++|+++++.....+.+|..++|.+...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  152 (381)
T PRK03633         73 SYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK  152 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999887765432  444453 358999999999999999999887666


Q ss_pred             ccC
Q 027462          199 TAP  201 (223)
Q Consensus       199 ~~p  201 (223)
                      ..+
T Consensus       153 l~~  155 (381)
T PRK03633        153 VST  155 (381)
T ss_pred             ccc
Confidence            544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.34  E-value=5.2e-12  Score=118.71  Aligned_cols=125  Identities=22%  Similarity=0.393  Sum_probs=95.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-h
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-I  166 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-~  166 (223)
                      +.....|+.+.+.++..++.++.|+++|.||||..++++.++.++|.++++-++|...++.+..+.|+|.|....... +
T Consensus        76 ~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~i  155 (599)
T PF06609_consen   76 GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAI  155 (599)
T ss_pred             CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            567888999999999999999999999999999999999999999999999999999999999999999877654322 4


Q ss_pred             ccccccc-ccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhhc
Q 027462          167 SQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLLH  221 (223)
Q Consensus       167 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l~  221 (223)
                      ++....| |...+........+.+.++|.+......         ..+|||+|++.
T Consensus       156 sEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---------~~~WRw~~~~~  202 (599)
T PF06609_consen  156 SELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---------HSGWRWIFYIF  202 (599)
T ss_pred             HHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---------CCCcchHHHHH
Confidence            4444333 5555544444444444445554433332         24899998763

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.33  E-value=7.5e-12  Score=114.37  Aligned_cols=125  Identities=14%  Similarity=0.168  Sum_probs=100.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHhhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIF-GRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v-~r~l~G~g~g~~~~~~~  165 (223)
                      +++.+.+++.+.+.++..++.++.|++.||+|||++++.+.++..++.+++++++++..+++ .|++.|++.+...+...
T Consensus        51 ~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~  130 (455)
T TIGR00892        51 ATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSL  130 (455)
T ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHH
Confidence            68999999999999999999999999999999999999999999999999999988887765 57899998886533322


Q ss_pred             --hcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                        ..+.++++|+++.+....+..+|..++|.+..-+..         ..+|||.|.+
T Consensus       131 ~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~---------~~gwr~~f~~  178 (455)
T TIGR00892       131 TMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFE---------SFGWRGSFLI  178 (455)
T ss_pred             HHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHH---------HhChHHHHHH
Confidence              444556679999999999999998888775544433         2357777654

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.9e-12  Score=116.88  Aligned_cols=139  Identities=14%  Similarity=0.119  Sum_probs=109.5

Q ss_pred             HHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHH
Q 027462           35 LSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVT  114 (223)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~  114 (223)
                      +..++.++.+++.-.|...+....  ++.+++|                  +++++..+.+++.+.+...++.|++|++.
T Consensus        33 ~~l~il~~vnlmny~Dr~~iagv~--~~v~~~f------------------ni~~s~~Gll~~vf~v~~~i~sPl~gyLa   92 (493)
T KOG1330|consen   33 LTLVILCLVNLMNYADRYTIAGVL--KEVQTYF------------------NISDSELGLLQTVFIVVFMIASPLFGYLA   92 (493)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhh--HHHHHhc------------------CCCchhccchhHHHHHHHHHHHHHHHHHH
Confidence            345556666777777777665432  5555555                  47999999999999999999999999999


Q ss_pred             hhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccc
Q 027462          115 RAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVS  191 (223)
Q Consensus       115 dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~  191 (223)
                      ||++||+++.+|..++.++.+.++++..++++.++|.+.|+|.+...+...  +++-+++ +|++.++.+.-.-.+|..+
T Consensus        93 dryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsgl  172 (493)
T KOG1330|consen   93 DRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGL  172 (493)
T ss_pred             hhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccce
Confidence            999999999999999999999999999999999999999999999888733  5555544 4666666655544444444


Q ss_pred             hh
Q 027462          192 YP  193 (223)
Q Consensus       192 ~~  193 (223)
                      +.
T Consensus       173 G~  174 (493)
T KOG1330|consen  173 GY  174 (493)
T ss_pred             eE
Confidence            43

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.33  E-value=1.4e-11  Score=110.19  Aligned_cols=150  Identities=15%  Similarity=0.164  Sum_probs=118.1

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHh
Q 027462           30 TVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLF  109 (223)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~  109 (223)
                      +.+.++..+...+..+...++..++.+.  +|.+.++++                  +++.+.++..+.+.++..++.++
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~------------------~s~~~~~~~~~~~~~~~~~~~~~   67 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPG--MLAVVEDFN------------------AGAEWVPTSMTAYLAGGMFLQWL   67 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcc--hHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666667666666666543  477877775                  68999999999999999999999


Q ss_pred             HHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccccc-ccccccchhhhcc
Q 027462          110 ASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYV  186 (223)
Q Consensus       110 ~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~  186 (223)
                      .|++.||+|||+++.++.++..++.+....+++++.+++.|++.|++.+...+...  .++.++++ |.++.+.......
T Consensus        68 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  147 (406)
T PRK15402         68 LGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVAL  147 (406)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888999999999999999998887655433  55556554 6777777777777


Q ss_pred             cCccchhhhhhhc
Q 027462          187 LPLVSYPLIFSIT  199 (223)
Q Consensus       187 ~~~~~~~~~~~~~  199 (223)
                      ++.+++|.+..-+
T Consensus       148 ~~~~~g~~i~~~l  160 (406)
T PRK15402        148 LAPLLGPLVGAAL  160 (406)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777765443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.32  E-value=4.9e-12  Score=110.07  Aligned_cols=129  Identities=11%  Similarity=-0.022  Sum_probs=107.9

Q ss_pred             hhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHH
Q 027462           46 IFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILV  125 (223)
Q Consensus        46 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~  125 (223)
                      ++.++...++..  +|.+.++++                  +++.+.+++.+...++..++.++.|++.||+|||+.+.+
T Consensus         6 ~~~~~~~~~~~~--~~~~~~~~g------------------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   65 (379)
T TIGR00881         6 AYYLVRKNFALA--MPYLVEEIG------------------LSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI   65 (379)
T ss_pred             HHHHhHHhhhhh--hHHHHHHhC------------------CCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH
Confidence            334445444433  377777664                  689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhh
Q 027462          126 GGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPL  194 (223)
Q Consensus       126 ~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  194 (223)
                      +.++..++.++.+++++++.+++.|++.|++.+...+...  .++.+++ +|+++.+.......+|.+++|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  137 (379)
T TIGR00881        66 GLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPP  137 (379)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHH
Confidence            9999999999999999999999999999999887766544  5555554 4899999999999999998884

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.32  E-value=1.1e-11  Score=108.81  Aligned_cols=132  Identities=14%  Similarity=0.102  Sum_probs=109.1

Q ss_pred             hhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHH
Q 027462           48 GFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGG  127 (223)
Q Consensus        48 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~  127 (223)
                      ..+...+.+.  +|.+.++++                  .++++.+++.+.+.++..++.++.|++.||+|||+++..+.
T Consensus        18 ~~~~~~~~~~--~p~~~~~~g------------------~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~   77 (385)
T TIGR00710        18 PLGIDMYLPA--FPEIAADLS------------------TPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGL   77 (385)
T ss_pred             HHHHHHhccc--HHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH
Confidence            4444444433  477777774                  68999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462          128 TAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       128 l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      ++..++.+....++++..+++.|++.|++.+...+...  ..+.+++ +|+++++.......+|.+++|.+..-+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  152 (385)
T TIGR00710        78 FIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYI  152 (385)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888766543  5555554 488899999998888888887765543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.30  E-value=4.1e-12  Score=110.57  Aligned_cols=114  Identities=12%  Similarity=-0.004  Sum_probs=100.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      +++.+.+++.+.+.++..++.++.|++.||+|||+++.++.++..++.++.+++++++.+++.|++.|++.+...+... 
T Consensus        26 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  105 (399)
T TIGR00893        26 LSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIIL  105 (399)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999888776543 


Q ss_pred             -hcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462          166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                       .++.+++ +|+++.+.......+|.+++|.+..-+.
T Consensus       106 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  142 (399)
T TIGR00893       106 IVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL  142 (399)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence             5566654 4889999999999999998887665443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.29  E-value=1.7e-11  Score=110.85  Aligned_cols=143  Identities=17%  Similarity=0.181  Sum_probs=115.0

Q ss_pred             HHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc
Q 027462           39 VAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFG  118 (223)
Q Consensus        39 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G  118 (223)
                      .++...++.|++.++.+++.  |.++++++                  +++.+.+++.+.+.++..+++++.|++.||+|
T Consensus         7 ~~~~~f~~~G~~~~~~~~l~--~~~~~~~~------------------~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G   66 (410)
T TIGR00885         7 LITSLFALWGFANDITNPMV--PQFQQAFT------------------LTAFQAALVQSAFYGGYFIMAIPAAIFMKKLS   66 (410)
T ss_pred             HHHHHHHHHHHHHHhHHHHH--HHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            45556677788877776665  88888875                  69999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhhhhhhhhhhhh--hccccc-ccccccccchhhhcccCccch
Q 027462          119 RKASILVGGTAFLAGSAIGGA---ALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWH-HQNTEEHSPLASKYVLPLVSY  192 (223)
Q Consensus       119 rk~~~~~~~l~~~~~~l~~~~---a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~  192 (223)
                      ||+++.++.+++.++.++...   .+++..+++.|++.|+|.|...+..+  .....+ ++|++..+..+....+|..++
T Consensus        67 ~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g  146 (410)
T TIGR00885        67 YKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIG  146 (410)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998877544   35788999999999999998877543  333333 346777888888888888888


Q ss_pred             hhhhhhccC
Q 027462          193 PLIFSITAP  201 (223)
Q Consensus       193 ~~~~~~~~p  201 (223)
                      |.+...+..
T Consensus       147 ~~i~~~l~~  155 (410)
T TIGR00885       147 MVVAQQLIL  155 (410)
T ss_pred             HHHHHHHHh
Confidence            877666543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.28  E-value=2.2e-11  Score=111.77  Aligned_cols=96  Identities=17%  Similarity=0.147  Sum_probs=78.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----LNIYMLIFGRVLLGVGIGFT  160 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----~~~~~l~v~r~l~G~g~g~~  160 (223)
                      ++++++.+++.+...++..+..++.|++.||+|.|+++.++.++..+..+..+++     +++..+++.|++.|++ |..
T Consensus        66 ~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~  144 (462)
T PRK15034         66 NFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GAN  144 (462)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHh
Confidence            5899999999999999999999999999999999999999999999999888876     7999999999999998 555


Q ss_pred             hhhhh--hcccccc-cccccccchh
Q 027462          161 NQCRY--ISQKWHH-QNTEEHSPLA  182 (223)
Q Consensus       161 ~~~~~--~~~~~~~-~~~~~~~~~~  182 (223)
                      .+...  ++.-+.+ +|+++.+...
T Consensus       145 f~~~~~~vs~wfp~~~rG~A~Gi~~  169 (462)
T PRK15034        145 FASSMGNISFFFPKAKQGSALGING  169 (462)
T ss_pred             HHHHHHHHHHHCCHhHhHHHHHHHH
Confidence            55521  3333433 2556665553

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.28  E-value=1.4e-11  Score=106.44  Aligned_cols=115  Identities=23%  Similarity=0.404  Sum_probs=99.0

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      +.++.+.+++.+.+.++..++.++.|++.||+|||+++.++.++..++.++..++++.+.+++.|++.|++.+...+...
T Consensus        28 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  107 (352)
T PF07690_consen   28 GLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASN  107 (352)
T ss_dssp             TTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccccccccc
Confidence            46899999999999999999999999999999999999999999999866666767777999999999999988877654


Q ss_pred             --hcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462          166 --ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       166 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                        +.+.+++ +|+++++.......+|.+++|.+..-+.
T Consensus       108 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  145 (352)
T PF07690_consen  108 ALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI  145 (352)
T ss_dssp             HHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence              6666665 5999999999999999998888766555

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00898 2A0119 cation transport protein

Probab=99.28  E-value=1.1e-11  Score=113.95  Aligned_cols=114  Identities=18%  Similarity=0.215  Sum_probs=95.8

Q ss_pred             cccCCC---hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 027462           83 NYCKFD---SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGF  159 (223)
Q Consensus        83 ~~~~~s---~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~  159 (223)
                      ++++++   +.+.+++.+.+.++.+++.++.|+++||+|||++++++.++..++.++.++++++..+++.|++.|++.+.
T Consensus       117 ~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~  196 (505)
T TIGR00898       117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGG  196 (505)
T ss_pred             EEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccc
Confidence            334466   88999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhh--hccccccc-ccccccchhhhcccCccchhhhh
Q 027462          160 TNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIF  196 (223)
Q Consensus       160 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  196 (223)
                      ..+...  .++.+.++ |.++.+.....+.+|.++.|.+.
T Consensus       197 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  236 (505)
T TIGR00898       197 IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVA  236 (505)
T ss_pred             hHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            777643  55555443 77777777777777777666543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.26  E-value=4.7e-11  Score=102.50  Aligned_cols=115  Identities=23%  Similarity=0.343  Sum_probs=100.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      .++.+.+++.+...++..++.++.|++.||+|||+.+.++.++..++.+...+++++..+++.|++.|++.+...+... 
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  110 (352)
T cd06174          31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAA  110 (352)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHH
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999888777643 


Q ss_pred             -hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462          166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                       .++..++ +|++.++.......+|..++|.+...+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174         111 LIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             HHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             5666655 58889999998888888888876665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.26  E-value=1.5e-11  Score=113.85  Aligned_cols=78  Identities=26%  Similarity=0.240  Sum_probs=74.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      +.+.....+..+.+++|.++|+++.|+++||+|||++++.+.++..++.+..++++|+..+++.|++.|++.+.....
T Consensus       114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~  191 (521)
T KOG0255|consen  114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV  191 (521)
T ss_pred             eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence            357888899999999999999999999999999999999999999999999999999999999999999999998888

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.25  E-value=3e-11  Score=104.72  Aligned_cols=125  Identities=14%  Similarity=0.081  Sum_probs=104.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL-----NIYMLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~-----~~~~l~v~r~l~G~g~g~~~  161 (223)
                      .++.+.+++.+...++..++.++.|++.||+|||++++.+.++..++.++..++.     +++.+++.|++.|++.+...
T Consensus        31 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  110 (365)
T TIGR00900        31 GSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFT  110 (365)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            4889999999999999999999999999999999999999998888888877777     89999999999999998877


Q ss_pred             hhhh--hcccccc-cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          162 QCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       162 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      +...  ..+..++ +|+++.+.......+|.+++|.+..-+..         ..+|++.+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---------~~g~~~~~~~  163 (365)
T TIGR00900       111 PAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA---------TLGIKWAIWV  163 (365)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------HhhHHHHHHH
Confidence            7643  5555544 58999999999999999988876554432         2467776654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.25  E-value=2.2e-11  Score=108.40  Aligned_cols=113  Identities=20%  Similarity=0.282  Sum_probs=94.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      +++.+.+++.+.+.++..++.++.|++.||+|||+.+.++.++..++.++..+++++..+++.|++.|++.+...+... 
T Consensus        40 ~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  119 (394)
T PRK11652         40 VREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMART  119 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999998888889999999999999998876555432 


Q ss_pred             -hcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462          166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                       ..+.+++ ++.++.+....+..++.+++|.+..-.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l  155 (394)
T PRK11652        120 LPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLL  155 (394)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3444543 477788888888888888787765443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.25  E-value=2.7e-11  Score=110.32  Aligned_cols=108  Identities=14%  Similarity=-0.019  Sum_probs=89.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL----NIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~----~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      +++++.+++.+...++..+++++.|++.||+|||++++++.++..++.+..++++    ++..+++.|++.|++.+...+
T Consensus        60 ~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~  139 (452)
T PRK11273         60 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP  139 (452)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccch
Confidence            6899999999999999999999999999999999999999999998888877653    677888999999998887655


Q ss_pred             hhh--hcccccc-cccccccchhhhcccCcc-chhh
Q 027462          163 CRY--ISQKWHH-QNTEEHSPLASKYVLPLV-SYPL  194 (223)
Q Consensus       163 ~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~  194 (223)
                      ...  ..+.+.+ +|+++.+....+..+|.. .+|+
T Consensus       140 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l  175 (452)
T PRK11273        140 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL  175 (452)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            332  4444544 489999998888888764 4554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.23  E-value=3.1e-11  Score=110.00  Aligned_cols=118  Identities=18%  Similarity=0.092  Sum_probs=101.4

Q ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhhh
Q 027462           84 YCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA--LNIYMLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        84 ~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a--~~~~~l~v~r~l~G~g~g~~~  161 (223)
                      +++++..+.+++.+.+.+++.++.++.|++.||+|||+++.++.++..++.+++.++  .++..+++.|+++|++.+...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            678899999999999999999999999999999999999999999888888776554  457788999999999999888


Q ss_pred             hhhh--hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462          162 QCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       162 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      +...  .++.+++ +|+++.+....+..+|.+++|.+...+..
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~  192 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE  192 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7654  6666655 49999999999999999999887665543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.23  E-value=7.7e-11  Score=103.10  Aligned_cols=110  Identities=13%  Similarity=0.137  Sum_probs=90.7

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL-NIYMLIFGRVLLGVGIGFTNQCR  164 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~-~~~~l~v~r~l~G~g~g~~~~~~  164 (223)
                      ++++.+.+++.+...++..+++++.|++.||+|||+.+.++.++..++.+++++++ ++..+++.|++.|++.+...+..
T Consensus        33 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  112 (366)
T TIGR00886        33 GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCM  112 (366)
T ss_pred             CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHH
Confidence            47999999999999999999999999999999999999999999999999999998 99999999999999866443322


Q ss_pred             h-hcccccc-cccccccchhhhcccCccchhhh
Q 027462          165 Y-ISQKWHH-QNTEEHSPLASKYVLPLVSYPLI  195 (223)
Q Consensus       165 ~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  195 (223)
                      . .++.+++ +|+++.+.......+|..+++.+
T Consensus       113 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i  145 (366)
T TIGR00886       113 PWISFFFPKKIQGTALGLAAGWGNMGGGVAQFV  145 (366)
T ss_pred             HHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence            2 5555544 48999988886666665555443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.22  E-value=4.4e-11  Score=105.94  Aligned_cols=115  Identities=19%  Similarity=0.154  Sum_probs=102.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      .+..-.|.+.|.+.+.+++.++++|.++||+|||+++++|++..++.+++.+.+.++..+++.|++.|+.-|....+++ 
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAi  144 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAI  144 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHH
Confidence            3566779999999999999999999999999999999999999999999999999996666669999999999888877 


Q ss_pred             hccccccc-ccccccchhhhcccCccchhhhhhhccC
Q 027462          166 ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      +++-...+ |...++.++..+++|.+++|.+.+-+..
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            78877666 9999999999999999999987655443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.22  E-value=9e-11  Score=104.28  Aligned_cols=109  Identities=22%  Similarity=0.182  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-hccc
Q 027462           91 LLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-ISQK  169 (223)
Q Consensus        91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-~~~~  169 (223)
                      ..+++.+...++..++.++.|++.||+|||+++..+.++..++.++..++++++.+++.|++.|++.+....... ..+.
T Consensus        55 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  134 (408)
T PRK09874         55 WSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQ  134 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHh
Confidence            358889999999999999999999999999999999998888888888889999999999999987654322211 4444


Q ss_pred             cc-ccccccccchhhhcccCccchhhhhhhc
Q 027462          170 WH-HQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       170 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      +. ++|+++.+.......+|.+++|.+..-+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  165 (408)
T PRK09874        135 VPRNKSGWALGTLSTGGVSGALLGPLAGGLL  165 (408)
T ss_pred             cCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            53 4588999999888888888888765544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.20  E-value=1.5e-10  Score=102.97  Aligned_cols=123  Identities=19%  Similarity=0.230  Sum_probs=103.7

Q ss_pred             cCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH
Q 027462           58 TSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG  137 (223)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~  137 (223)
                      ..+|.+.++++                  .++.+.++..+.+.++..++.++.|++.||+|||+.++++.++..++.++.
T Consensus        24 ~~lp~~~~~~~------------------~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~   85 (392)
T PRK10473         24 VGLPRIAADLN------------------ASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC   85 (392)
T ss_pred             hhHHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            34588887774                  689999999999999999999999999999999999999999999999988


Q ss_pred             hhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhhh
Q 027462          138 GAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSI  198 (223)
Q Consensus       138 ~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (223)
                      ..++++..+++.|++.|++.+...+...  ..+.+++ +|+++.+.......++.+++|.+..-
T Consensus        86 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~  149 (392)
T PRK10473         86 SLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHL  149 (392)
T ss_pred             HHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999887666443  5556644 48888898888888888777776543

>PRK11043 putative transporter; Provisional

Probab=99.19  E-value=5.4e-11  Score=106.06  Aligned_cols=113  Identities=16%  Similarity=0.143  Sum_probs=92.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh--
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR--  164 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~--  164 (223)
                      .++++.+++.+.+.++..+++++.|++.||+|||+.+..+.++..++.++..++++++.+++.|++.|++.+...+..  
T Consensus        38 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~  117 (401)
T PRK11043         38 TSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQA  117 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999998888899999999999999999877655432  


Q ss_pred             hhcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462          165 YISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       165 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      ...+.+++ ++.+.++.......++..++|.+..-+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l  153 (401)
T PRK11043        118 LVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWL  153 (401)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            14555544 466677777776777777777655433

>PTZ00207 hypothetical protein; Provisional

Probab=99.19  E-value=3.6e-10  Score=106.55  Aligned_cols=112  Identities=12%  Similarity=-0.021  Sum_probs=88.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA------LNIYMLIFGRVLLGVGIGFT  160 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a------~~~~~l~v~r~l~G~g~g~~  160 (223)
                      ++.++.+++.+... ...+..++.|++.||+|+|+++.++.++..++.++++++      .+++.+++.|++.|+|.+..
T Consensus        59 ls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~  137 (591)
T PTZ00207         59 LTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLF  137 (591)
T ss_pred             cCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHH
Confidence            78999999887633 344567788999999999999999999999999999987      57899999999999998766


Q ss_pred             hhhhh--hcccccccccccccchhhhcccCccchhhhhhhc
Q 027462          161 NQCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       161 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      .+...  ....+.++|+++.+...+..++|+.+...+..-+
T Consensus       138 ~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l  178 (591)
T PTZ00207        138 DLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAF  178 (591)
T ss_pred             HHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55432  4444566789999999999999987544443333

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.18  E-value=2.1e-10  Score=105.06  Aligned_cols=112  Identities=10%  Similarity=0.024  Sum_probs=99.7

Q ss_pred             CCChhH-HHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462           86 KFDSQL-LAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR  164 (223)
Q Consensus        86 ~~s~~~-~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~  164 (223)
                      ++++++ .+.+.+.++.++++..++.|++.||+|.|+++.++.+...+..++.+++.++..+.+.|++.|++.|... +.
T Consensus        57 glT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~  135 (511)
T TIGR00806        57 NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AY  135 (511)
T ss_pred             CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            489999 9999999999999999999999999999999999999999999999999999999999999999999988 43


Q ss_pred             h--hccccccc-ccccccchhhhcccCccchhhhhhh
Q 027462          165 Y--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSI  198 (223)
Q Consensus       165 ~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  198 (223)
                      +  +...++++ |+++.++..++..+|.++++.+..-
T Consensus       136 ~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql  172 (511)
T TIGR00806       136 SSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL  172 (511)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3  55555554 8999999999999998888776554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00896 CynX cyanate transporter

Probab=99.18  E-value=8.4e-11  Score=103.17  Aligned_cols=122  Identities=16%  Similarity=0.121  Sum_probs=101.2

Q ss_pred             CcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh
Q 027462           59 SMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG  138 (223)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~  138 (223)
                      .+|.+.++++                  +++++.+++.+.+.++..++.++.|++.||+|||+++.++.++..++.+.+ 
T Consensus        22 ~lp~l~~~~~------------------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-   82 (355)
T TIGR00896        22 LLPQIRSALG------------------MSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-   82 (355)
T ss_pred             cHHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-
Confidence            3478887775                  699999999999999999999999999999999999999998888877776 


Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccccccccccchhhhcccCccchhhhhhhc
Q 027462          139 AALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       139 ~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      .+++...+++.|++.|++.+.......  ..+.++++|+++.+.++....+|..+++.+..-+
T Consensus        83 ~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l  145 (355)
T TIGR00896        83 SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPL  145 (355)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888889999999999887655432  4455566789999999998888888777654433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.15  E-value=2e-11  Score=116.32  Aligned_cols=156  Identities=15%  Similarity=0.071  Sum_probs=120.0

Q ss_pred             hhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHH
Q 027462           43 GGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKAS  122 (223)
Q Consensus        43 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~  122 (223)
                      ..+......+..+...  +.+.++|.                  ++.++.+++.+.+.++.+++.++.+++.||+|||+.
T Consensus        41 ~~~~~~~~~g~~~~~l--~~iek~F~------------------lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~  100 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSL--TTIERRFK------------------LSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV  100 (633)
T ss_pred             HHHHHHHHHHHHHhhc--hhhhhhhC------------------CCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE
Confidence            3344444445555443  77777774                  689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhh---------------------------------------------------hHHHHHHHHH
Q 027462          123 ILVGGTAFLAGSAIGGAAL---------------------------------------------------NIYMLIFGRV  151 (223)
Q Consensus       123 ~~~~~l~~~~~~l~~~~a~---------------------------------------------------~~~~l~v~r~  151 (223)
                      +.++.+++.++.+++++++                                                   .+..++++|+
T Consensus       101 i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (633)
T TIGR00805       101 IGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQL  180 (633)
T ss_pred             EEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHH
Confidence            9999999999999988764                                                   2456778999


Q ss_pred             HHhhhhhhhhhhhh--hccccccc-ccccccchhhhcccCccchhhhhhhccCC--CC-----Ccccccchhhhhhh
Q 027462          152 LLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAPK--RS-----RGAGAGESPWQWLL  218 (223)
Q Consensus       152 l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~-----rg~~~~~~~~~~~~  218 (223)
                      ++|+|.+...+...  +++.++++ |+.+.+.+.+...+|..+++++.+-+...  ++     .........+||..
T Consensus       181 l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiG  257 (633)
T TIGR00805       181 LRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIG  257 (633)
T ss_pred             HHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHH
Confidence            99999998877553  77777664 99999999999999999888876554431  11     12234455778753

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.14  E-value=7.1e-11  Score=108.67  Aligned_cols=132  Identities=15%  Similarity=0.207  Sum_probs=105.5

Q ss_pred             ccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhhhh
Q 027462           82 SNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL--NIYMLIFGRVLLGVGIGF  159 (223)
Q Consensus        82 ~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~--~~~~l~v~r~l~G~g~g~  159 (223)
                      ..+++++.++.+++.++++.|++++.+..|+++||+|.|+++..+.++.++..++..++.  +++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            456889999999999999999999999999999999999999999999999999988774  445778999999999999


Q ss_pred             hhhhhh-hccccccc--ccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhhc
Q 027462          160 TNQCRY-ISQKWHHQ--NTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLLH  221 (223)
Q Consensus       160 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l~  221 (223)
                      ..++.. +..+|-.+  |+++.+.+.++.-+|.++...+..++...        ..+|++.|++|
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--------~~GW~sifY~~  201 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--------SLGWPSIFYVF  201 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--------CCCCchHHHHH
Confidence            999854 66666442  77777777777767666555444444332        14688877765

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.14  E-value=2.4e-10  Score=100.63  Aligned_cols=113  Identities=19%  Similarity=0.206  Sum_probs=97.1

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      +++++.+++.+.+.++..++.++.|++.||+|||+.+..+.++..++.+.+.+++++..+++.|++.|++.+...+... 
T Consensus        23 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  102 (377)
T PRK11102         23 VSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINA  102 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999887666543 


Q ss_pred             -hcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462          166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                       ..+.+++ +|.++++.......+|..++|.+...+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  138 (377)
T PRK11102        103 LMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWL  138 (377)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             5555544 488888888888888888887755433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.13  E-value=2.1e-10  Score=106.68  Aligned_cols=154  Identities=18%  Similarity=0.214  Sum_probs=121.9

Q ss_pred             CCCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHH
Q 027462           26 NGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLI  105 (223)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~  105 (223)
                      +.-+.|......++..+  +.+|+..+.-   ...+.++++|+                  -+..+.+|+.+.......+
T Consensus        40 dGG~gWvV~~a~fl~~~--~~~g~~~~~G---v~~~~~~~~f~------------------~s~~~~~~i~sl~~~~~~~   96 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNL--STDGLINSFG---LLFEELMDYFG------------------SSSSQIAWIGSLLLGVYLL   96 (509)
T ss_pred             CCCeeeeeeHhHHHHHH--hhhcchheeh---hhHHHHHHHhC------------------CCccHHHHHHHHHHHHHHH
Confidence            44556655555544444  3334333321   33478888885                  3677799999999999999


Q ss_pred             HHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHhhhhhhhhhhh--hhcccccccccccccchh
Q 027462          106 ASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIF-GRVLLGVGIGFTNQCR--YISQKWHHQNTEEHSPLA  182 (223)
Q Consensus       106 ~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v-~r~l~G~g~g~~~~~~--~~~~~~~~~~~~~~~~~~  182 (223)
                      .+|+.+.+.||+|.|.+.+.|.++..++.++..++++++.+++ .-++.|+|.|+.+...  .+...|++||+.|.++..
T Consensus        97 ~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~  176 (509)
T KOG2504|consen   97 AGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAV  176 (509)
T ss_pred             hccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999977765 4667788888876643  277788999999999999


Q ss_pred             hhcccCccchhhhhhhccCC
Q 027462          183 SKYVLPLVSYPLIFSITAPK  202 (223)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~p~  202 (223)
                      ++.++|.++.|.+...+...
T Consensus       177 ~GsG~G~~~~~~l~~~l~~~  196 (509)
T KOG2504|consen  177 SGTGVGTVVFPPLLKYLLSK  196 (509)
T ss_pred             ccCCcceeeHHHHHHHHHHH
Confidence            99999999998877777663

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.13  E-value=3.1e-10  Score=101.76  Aligned_cols=110  Identities=7%  Similarity=0.145  Sum_probs=91.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      .++.+.+++.+.+.+...+..++.|+++||+|||++++.+.+++.++.+.++++.+.   ++.|+++|++.+...++.. 
T Consensus        35 ~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a  111 (393)
T PRK11195         35 YPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYG  111 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            478889999999999999999999999999999999999999998888877776553   6789999999999888753 


Q ss_pred             -hcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462          166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                       +++..++ +|.++.+..+....+|.+++|.+..-+
T Consensus       112 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195        112 ILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             5666644 488888888888777777777755433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.13  E-value=2.7e-10  Score=103.32  Aligned_cols=126  Identities=14%  Similarity=0.041  Sum_probs=99.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA----LNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a----~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      +++++.+++.+.+.++..++.++.|++.||+|||+.+.++.++..++.++.+..    .++..+++.|++.|++.|...+
T Consensus        58 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~  137 (438)
T TIGR00712        58 FSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWP  137 (438)
T ss_pred             CCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchH
Confidence            689999999999999999999999999999999999999998888888776654    4567778899999998887655


Q ss_pred             hhh--hccccc-ccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          163 CRY--ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       163 ~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      ...  ..+.++ ++|+++++.......+|..++|.+..-....        ..+||+.|.+
T Consensus       138 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--------~~~w~~~f~~  190 (438)
T TIGR00712       138 PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--------FNDWHAALYF  190 (438)
T ss_pred             HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH--------hhhhHHHHHH
Confidence            432  555564 4599999999999998888877654332211        1357776654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00897 2A0118 polyol permease family

Probab=99.09  E-value=8.6e-10  Score=98.85  Aligned_cols=114  Identities=13%  Similarity=0.083  Sum_probs=90.7

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh---hh-hhHHHHHHHHHHHhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG---AA-LNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~---~a-~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      +++++.+++.+.+.++..++.++.|++.||+|||+++..+.++..++.+++.   .. .++..+++.|++.|+|.+...+
T Consensus        45 ~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~  124 (402)
T TIGR00897        45 LSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAY  124 (402)
T ss_pred             CCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHh
Confidence            6899999999999999999999999999999999999999999888766542   32 5777888899999998876544


Q ss_pred             hhh--hccccc-ccccccccchhhhcccCc-cchhhhhhhcc
Q 027462          163 CRY--ISQKWH-HQNTEEHSPLASKYVLPL-VSYPLIFSITA  200 (223)
Q Consensus       163 ~~~--~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  200 (223)
                      ...  ..+.++ ++|+++.+......++|. +++|.+..-..
T Consensus       125 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~  166 (402)
T TIGR00897       125 SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI  166 (402)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            322  444554 459999999999999886 46776544433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.09  E-value=6e-10  Score=99.97  Aligned_cols=167  Identities=11%  Similarity=0.032  Sum_probs=131.0

Q ss_pred             CCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHH
Q 027462           27 GKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIA  106 (223)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~  106 (223)
                      ...+++++.+.+...+++..+-+..-.++  .++|.++++..                  +|.++.+.+.+++.+.+.++
T Consensus        21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~--~a~p~l~e~~~------------------lsk~~lG~i~s~f~i~YG~s   80 (448)
T COG2271          21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFN--LAMPALIEDGG------------------LSKTQLGILGSAFSITYGVS   80 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hccHHHHHhcC------------------CCHHHHHHHHHHHHHHHHHH
Confidence            33445555556666666666655555554  45688888873                  59999999999999999999


Q ss_pred             HHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-hcccc--cccccccccchhh
Q 027462          107 SLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-ISQKW--HHQNTEEHSPLAS  183 (223)
Q Consensus       107 ~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-~~~~~--~~~~~~~~~~~~~  183 (223)
                      .++.|.++||.+.|+.+.++.++..+.++++++.+++..+.+.-++.|...|...+.++ .=-+|  ++.|++..++-+.
T Consensus        81 Kf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~  160 (448)
T COG2271          81 KFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNT  160 (448)
T ss_pred             HHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehh
Confidence            99999999999999999999999999999999999999999999999999888888765 22344  3349999999999


Q ss_pred             hcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          184 KYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       184 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      ..-+|..+.|.+..-       +......+||+.|..
T Consensus       161 shNiGGal~~~~~~l-------a~~~~~~~w~~~f~~  190 (448)
T COG2271         161 SHNIGGALAPLVALL-------AFFAFHGGWRAAFYF  190 (448)
T ss_pred             hhhcccchHHHHHHH-------HHHHhccchhHHHHH
Confidence            999999988876632       222222367776654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.05  E-value=1.8e-09  Score=97.04  Aligned_cols=125  Identities=18%  Similarity=0.115  Sum_probs=103.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      ++++.+.+.+.+...+...+..++.|++.||+|||+++..+.++..++.+.+.++++++.+++.|++.|++.+...+...
T Consensus        42 g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~  121 (400)
T PRK11646         42 GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRT  121 (400)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999998889999999999999998876655432


Q ss_pred             --hcccc-cccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          166 --ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       166 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                        ..+.. +++|+++.+.......+|..++|.+..-+..          .+|++.+++
T Consensus       122 ~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----------~g~~~~f~~  169 (400)
T PRK11646        122 ALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----------YDFRLVCAT  169 (400)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHH
Confidence              44444 4468999999988888888888876655542          256666654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.05  E-value=7e-10  Score=97.20  Aligned_cols=126  Identities=14%  Similarity=0.131  Sum_probs=90.0

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILV-GGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR  164 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~-~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~  164 (223)
                      +.++.+.+++.+.+.+...+..++.|++.||+|||+.+++ +.++..++.+++++++++..+++.|++.|.+.+...+..
T Consensus        29 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~  108 (375)
T TIGR00899        29 RARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQL  108 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHH
Confidence            4689999999999999999999999999999999887654 555556667778888999888889998887666555543


Q ss_pred             h-hccccccc--cccc--ccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          165 Y-ISQKWHHQ--NTEE--HSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       165 ~-~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      . ....+.++  |.+.  .+.......+|.+++|.+..-...         ..+||+.+.+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~---------~~~~~~~f~~  160 (375)
T TIGR00899       109 FALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL---------GFGFTVMFLT  160 (375)
T ss_pred             HHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH---------hcccHHHHHH
Confidence            2 22223222  3322  466666777888888876554432         1367776654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.04  E-value=3.5e-10  Score=103.72  Aligned_cols=164  Identities=20%  Similarity=0.269  Sum_probs=127.9

Q ss_pred             CCCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHH
Q 027462           26 NGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLI  105 (223)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~  105 (223)
                      ..+.+|+..+...+   ..++.+.+.+++.  ..+-++.++..+                +-+.+..||+.++..++.++
T Consensus        28 ~~~t~wrsi~l~~~---~sfl~~v~~sI~~--~s~wpYl~~lD~----------------~A~~~ffG~viaa~slg~~i   86 (488)
T KOG2325|consen   28 ERKTNWRSIYLALL---NSFLVAVQFSIYL--TSMWPYLQKLDP----------------TATATFFGLVIAASSLGHAI   86 (488)
T ss_pred             ccCCchHhHHHHHH---HHHHHhhhheEEE--eecchhhhhcCC----------------CCCcchhhHHHHHHHHHHHh
Confidence            34556655443332   3345566666664  334566666543                23788899999999999999


Q ss_pred             HHHhHHhHHhhhch-hHHHHHHHHHHHHHHHHH-hhh---h-hHHHHHHHHHHHhhhhhhhhhhh-hhccccccc-cccc
Q 027462          106 ASLFASTVTRAFGR-KASILVGGTAFLAGSAIG-GAA---L-NIYMLIFGRVLLGVGIGFTNQCR-YISQKWHHQ-NTEE  177 (223)
Q Consensus       106 ~~~~~g~l~dr~Gr-k~~~~~~~l~~~~~~l~~-~~a---~-~~~~l~v~r~l~G~g~g~~~~~~-~~~~~~~~~-~~~~  177 (223)
                      .+++.|.+..|.+. |++++.++++.++++++. +++   + ..+.+.++|++.|+|.|.....+ |++++...+ |.++
T Consensus        87 ~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA  166 (488)
T KOG2325|consen   87 FSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRA  166 (488)
T ss_pred             cchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHH
Confidence            99999999999986 888899999999999888 443   3 55778899999999999888877 488888665 9999


Q ss_pred             ccchhhhcccCccchhhhhhhccCCCCCccccc
Q 027462          178 HSPLASKYVLPLVSYPLIFSITAPKRSRGAGAG  210 (223)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~  210 (223)
                      ++..+.+..+|.+++|.+..-+.|-...|.-..
T Consensus       167 ~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~  199 (488)
T KOG2325|consen  167 FAATSGGFVLGIILGPTIQLAFTPLGEKGFMIL  199 (488)
T ss_pred             HHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEc
Confidence            999999999999999999988888766665543

>PRK10054 putative transporter; Provisional

Probab=99.03  E-value=2.8e-09  Score=95.62  Aligned_cols=115  Identities=14%  Similarity=0.106  Sum_probs=93.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      ++++.+.+++.+...++..++.++.|++.||+|||++++++.++..++.++.++.+++..+++.|.+.|.+.+...++..
T Consensus        39 g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  118 (395)
T PRK10054         39 SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLK  118 (395)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999998888888888889988888888888776665444322


Q ss_pred             --hcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462          166 --ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       166 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                        .++..++ +|.++++.......+|.+++|.+..-+.
T Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054        119 AWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             HHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4444433 4888888888888888888877665543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.01  E-value=1.1e-09  Score=95.79  Aligned_cols=132  Identities=13%  Similarity=0.115  Sum_probs=93.8

Q ss_pred             ChhHHHHHHHH-----HHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHh
Q 027462           88 DSQLLAAFTSS-----LYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIY--------MLIFGRVLLG  154 (223)
Q Consensus        88 s~~~~~~~~s~-----~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~--------~l~v~r~l~G  154 (223)
                      ++++.+.+.+.     ..++..+++++.|++.||+|||++++++.++..++.+++++++++.        .+++.|+++|
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  107 (394)
T TIGR00883        28 GDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQG  107 (394)
T ss_pred             CChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHH
Confidence            34555544332     3344457889999999999999999999999999999999887764        4788999999


Q ss_pred             hhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          155 VGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       155 ~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      ++.+...+...  .++.+++ +|+++.+....+..+|.++++....-+... ..+......+||+.+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~-~~~~~~~~~~w~~~~~~  175 (394)
T TIGR00883       108 FSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL-LGDDALLEWGWRIPFLV  175 (394)
T ss_pred             hhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHhhccchHHHHHH
Confidence            99887766543  5666644 588999999999889988887654332210 01111223468887654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=1e-09  Score=97.80  Aligned_cols=113  Identities=14%  Similarity=0.165  Sum_probs=94.0

Q ss_pred             cccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462           83 NYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        83 ~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      ++.+-+++++|++..+..+.+.+..++.|.+.||+|+|..+++|..++....++.++..+++++++.|.++|+|.+....
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            44556788999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhh--hcccccc--cccccccchhhhcccCccchhhh
Q 027462          163 CRY--ISQKWHH--QNTEEHSPLASKYVLPLVSYPLI  195 (223)
Q Consensus       163 ~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  195 (223)
                      +..  +.+++.+  +|+++++..=+.-++|-+++|.+
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpf  215 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPF  215 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCc
Confidence            742  5555533  25666666666666666666553

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.97  E-value=9.4e-09  Score=95.21  Aligned_cols=126  Identities=12%  Similarity=0.056  Sum_probs=101.9

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhh-hchhHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRA-FGRKASILVGGTAFLAGSAIGGAALNIYM-LIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr-~Grk~~~~~~~l~~~~~~l~~~~a~~~~~-l~v~r~l~G~g~g~~~~~  163 (223)
                      +++.++.+++.+.+.....+..+++|+++|| +|||++++++.+++.+++++++++.+... ++++|+++|+|.|...+.
T Consensus        46 g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~  125 (489)
T PRK10207         46 GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKAN  125 (489)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCC
Confidence            4788999999999998888888999999999 99999999999999999999998876444 457899999999887665


Q ss_pred             hh--hcccccc---cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          164 RY--ISQKWHH---QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       164 ~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      ..  +.+.+++   ||..+++.....+.+|..++|.+..-+..         ..+|+|.|.+
T Consensus       126 ~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~---------~~gw~~~F~i  178 (489)
T PRK10207        126 PASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD---------KFGYSVTYNL  178 (489)
T ss_pred             HHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH---------hhChHHHHHH
Confidence            43  5666633   35778999999999999888876544432         2369998876

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.97  E-value=1.2e-08  Score=93.93  Aligned_cols=126  Identities=11%  Similarity=0.163  Sum_probs=103.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhh-hchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRA-FGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR  164 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr-~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~  164 (223)
                      +++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++..++.++.+++++...+++.|++.|+|.|...+..
T Consensus        44 g~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~  123 (475)
T TIGR00924        44 GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANP  123 (475)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCH
Confidence            5799999999999999999999999999999 899999999999999999999998888888899999999988766654


Q ss_pred             h--hccccc----ccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          165 Y--ISQKWH----HQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       165 ~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      .  ..+.++    +||+++++.......+|.+++|.+..-+...         .+|++.|.+
T Consensus       124 ~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~---------~g~~~~f~~  176 (475)
T TIGR00924       124 SSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN---------YGYHVGFNL  176 (475)
T ss_pred             HHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---------cChHHHHHH
Confidence            3  444442    3588899998888889999898876655431         356666543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.89  E-value=7.8e-09  Score=95.77  Aligned_cols=136  Identities=16%  Similarity=0.140  Sum_probs=114.4

Q ss_pred             cccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462           83 NYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        83 ~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      ++.+....+.+++.+.+.++++++.++++.+.||++..+.+....++..+..++....+|++.+++.|++.|+..+...|
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP  153 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP  153 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence            34456788999999999999999999999999999988888888888888887777899999999999999999999888


Q ss_pred             hhh--hccccccc-ccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhhc
Q 027462          163 CRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLLH  221 (223)
Q Consensus       163 ~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l~  221 (223)
                      +.-  .++-|++. |+.-+++..+..++|.+++.++.+-+..  .++. .+..+|||.|.+.
T Consensus       154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~--~~~~-~~~~gW~~~FiI~  212 (495)
T KOG2533|consen  154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK--LNGS-GGLAGWRWLFIIE  212 (495)
T ss_pred             HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh--hcCC-CCcCCceeehhHH
Confidence            663  67777664 9999999999999999999887777654  2222 2357899999764

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.88  E-value=6e-09  Score=92.77  Aligned_cols=114  Identities=11%  Similarity=0.091  Sum_probs=84.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHH-HHHHH-HHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGT-AFLAG-SAIGGAALNIYMLIFGRVLLGVGIGFTNQCR  164 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l-~~~~~-~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~  164 (223)
                      ++.++.+++.+.+.+...+++++.|++.||+|||........ ...+. .+....+++++.+++.|.+.|.+.+...+..
T Consensus        36 ~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~  115 (382)
T TIGR00902        36 LGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIG  115 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHH
Confidence            799999999999999999999999999999998543221111 11111 1234467889999999999888777655543


Q ss_pred             h-hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462          165 Y-ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       165 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                      . ....++++|+++++.....-++|.+++|.+..-+.
T Consensus       116 ~al~~~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~  152 (382)
T TIGR00902       116 DALANTWQKQFGLDYGKVRLIGSAAFIIGSALFGGLI  152 (382)
T ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            2 44566777899999999988899999887655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.87  E-value=1.7e-08  Score=101.21  Aligned_cols=113  Identities=13%  Similarity=0.091  Sum_probs=91.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG---AALNIYMLIFGRVLLGVGIGFTNQCR  164 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~---~a~~~~~l~v~r~l~G~g~g~~~~~~  164 (223)
                      +....+++.+.+.++..++++++|+++||+|||++++++.++..+..++..   .+.++..+++.|++.|++.+...++.
T Consensus        45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  124 (1146)
T PRK08633         45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK  124 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence            455679999999999999999999999999999999988877666555443   34678999999999999999887765


Q ss_pred             h--hcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462          165 Y--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       165 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                      .  +++.+.+ +|+++++.......+|.+++|.+..-+.
T Consensus       125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~  163 (1146)
T PRK08633        125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF  163 (1146)
T ss_pred             HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4  6666654 4999999999999988888887655443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.84  E-value=2.6e-09  Score=95.97  Aligned_cols=113  Identities=9%  Similarity=-0.072  Sum_probs=88.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA-----ALNIYMLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~-----a~~~~~l~v~r~l~G~g~g~~~  161 (223)
                      .++.+.+++.+...++..++.++.|++.||+|||+++.++.++..++.+..+.     .+++..+++.|++.|++.+...
T Consensus        49 ~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~  128 (417)
T PRK10489         49 GSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGV  128 (417)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999998887777766554432     4677888899999999877665


Q ss_pred             hhhh--hccccc-ccccccccchhhhcccCccchhhhhhhc
Q 027462          162 QCRY--ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       162 ~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      ++..  ..+..+ ++|.++.+.......+|.+++|.+..-+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l  169 (417)
T PRK10489        129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL  169 (417)
T ss_pred             HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence            5433  334443 3478888888888888888888765443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.84  E-value=3.4e-08  Score=91.62  Aligned_cols=126  Identities=13%  Similarity=0.086  Sum_probs=95.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhh-hchhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRA-FGRKASILVGGTAFLAGSAIGGAAL-NIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr-~Grk~~~~~~~l~~~~~~l~~~~a~-~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      ++++++.+++.+.+.......++++|++.|| +|||+.++++.++..++.++++++. +...+.++|++.|+|.|...+.
T Consensus        53 g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~  132 (500)
T PRK09584         53 GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKAN  132 (500)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCC
Confidence            4688888888887776666667899999999 5999999999999999988888874 4556778899999998876554


Q ss_pred             hh--hcccccc---cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          164 RY--ISQKWHH---QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       164 ~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      ..  ..+.+++   ||..+++.+.....+|..++|.+..-+..         ..+|++.|.+
T Consensus       133 ~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~---------~~g~~~~F~i  185 (500)
T PRK09584        133 PSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA---------KYGWSVAFAL  185 (500)
T ss_pred             HHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH---------hhCHHHHHHH
Confidence            32  4555532   35568888888888888888886655533         2358877765

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.84  E-value=1.4e-08  Score=90.86  Aligned_cols=141  Identities=16%  Similarity=0.126  Sum_probs=118.6

Q ss_pred             HhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh
Q 027462           41 ATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK  120 (223)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk  120 (223)
                      ....+++|+.....++++  |.+++.|+                  ++..+.+.+..+++.++.+.++..+++.+|+|+|
T Consensus        19 t~lFfl~G~~~~l~diLi--p~l~~~f~------------------ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk   78 (422)
T COG0738          19 TSLFFLWGFITCLNDILI--PHLKEVFD------------------LTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK   78 (422)
T ss_pred             HHHHHHHHHHhhcchhhH--HHHHHHhC------------------ccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH
Confidence            334466677777777665  88888885                  7999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccccc-ccccccchhhhcccCccchhh
Q 027462          121 ASILVGGTAFLAGSAIGG---AALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPL  194 (223)
Q Consensus       121 ~~~~~~~l~~~~~~l~~~---~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  194 (223)
                      +.++++..+++++..+..   ...++..++++-++.|.|.+....+.+  .....+++ .++=.+..++-+++|++++|.
T Consensus        79 ~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~  158 (422)
T COG0738          79 AGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPL  158 (422)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHH
Confidence            999999999999988774   346788888999999999999888765  55555554 788899999999999999999


Q ss_pred             hhhhccC
Q 027462          195 IFSITAP  201 (223)
Q Consensus       195 ~~~~~~p  201 (223)
                      +.+.+.-
T Consensus       159 ~g~~lil  165 (422)
T COG0738         159 LGSSLIL  165 (422)
T ss_pred             HHHHHHH
Confidence            8776554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.79  E-value=1.9e-08  Score=89.52  Aligned_cols=113  Identities=8%  Similarity=0.041  Sum_probs=84.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK----ASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk----~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      .+..+++++.+.+.++..+++++.|++.||+|||    +.+.+...+  ........+++++.+++.|++.|++.+...+
T Consensus        36 ~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~  113 (382)
T PRK11128         36 YTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWFGAHSFWLLFVAIGLFNLFFSPLVP  113 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHHhcccHHHHHHHHHHHHHHHccccc
Confidence            6999999999999999999999999999999984    333222221  1222333457788888999999988776666


Q ss_pred             hhh-hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462          163 CRY-ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       163 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      ... ...+|.++|+++++.......+|..++|.+...+..
T Consensus       114 ~~~a~~~~~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~  153 (382)
T PRK11128        114 LTDALANTWQKQIGLDYGKVRLWGSIAFVIGSALTGKLVS  153 (382)
T ss_pred             HHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            432 445677778899998888888888888887665543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.79  E-value=7.2e-09  Score=77.28  Aligned_cols=105  Identities=25%  Similarity=0.301  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-
Q 027462           96 TSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-  172 (223)
Q Consensus        96 ~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-  172 (223)
                      .+.+.++..++.++.+++.||+|||+.+..+..+..++.+.....++...+.+.+++.|++.+...+...  ..+..++ 
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            3456678899999999999999999999999988888888888888888888999999998887766543  4455544 


Q ss_pred             cccccccchhhhcccCccchhhhhhhcc
Q 027462          173 QNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                      +|++..+.......+|..++|.+..-..
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~  111 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLA  111 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence            4788888888888888877776555443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.75  E-value=6.9e-08  Score=83.84  Aligned_cols=114  Identities=14%  Similarity=-0.018  Sum_probs=85.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNI--YMLIFGRVLLGVGIGFTNQCR  164 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~--~~l~v~r~l~G~g~g~~~~~~  164 (223)
                      .++.+.+++.+...++..++.++.|++.||+|||+.+.++.++..++.++..+.++.  ..+++..++.|++.+...+..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  316 (377)
T TIGR00890       237 LSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLF  316 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhcc
Confidence            577888999999999999999999999999999999998888888877766655432  233455667777776655432


Q ss_pred             h--hcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462          165 Y--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       165 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                      .  ..+.+++ +|+++++.......+|..++|.+...+.
T Consensus       317 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~  355 (377)
T TIGR00890       317 PSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL  355 (377)
T ss_pred             HHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  4455544 4888888888888888888887665554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.73  E-value=2.2e-08  Score=89.85  Aligned_cols=102  Identities=16%  Similarity=0.057  Sum_probs=87.8

Q ss_pred             cccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHhhhhhh
Q 027462           83 NYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIY---MLIFGRVLLGVGIGF  159 (223)
Q Consensus        83 ~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~---~l~v~r~l~G~g~g~  159 (223)
                      +++++|+.|.+++.+...+...+..++.|.+.||||.|++..++.++..+-.+..+++.+.+   ++++.+++.|++.+.
T Consensus        42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Gas  121 (417)
T COG2223          42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGAS  121 (417)
T ss_pred             cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccce
Confidence            34468999999999999999999999999999999999999999999999999888885544   999999999987776


Q ss_pred             hhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccchh
Q 027462          160 TNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESP  213 (223)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~  213 (223)
                      ...                             +-...++++||+.+|.++|+.+
T Consensus       122 Fav-----------------------------~m~~~s~~fP~~~qG~AlGI~g  146 (417)
T COG2223         122 FAV-----------------------------GMPNASFFFPKEKQGLALGIAG  146 (417)
T ss_pred             ehc-----------------------------ccccccccCChhhhhHHHHHhc
Confidence            544                             4557888888888888888755

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.73  E-value=1.7e-07  Score=86.46  Aligned_cols=77  Identities=14%  Similarity=0.182  Sum_probs=56.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHH-H--hhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAI-G--GAALNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~-~--~~a~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      ++..+..+..+...++..++.++.|++.||+|||+.+.++.++..+..+. .  ..+++...+++++++.|++.+.....
T Consensus       283 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~  362 (490)
T PRK10642        283 YSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGV  362 (490)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777788888999999999999999999999988877654433322 1  12345667778888888766655444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.70  E-value=3e-07  Score=82.02  Aligned_cols=114  Identities=12%  Similarity=-0.030  Sum_probs=78.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH---hhhh-----hHHHHHHHHHHHhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG---GAAL-----NIYMLIFGRVLLGVGI  157 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~---~~a~-----~~~~l~v~r~l~G~g~  157 (223)
                      ++++.+.+++.+...++..++.++.|++.||+|||+.++.+.....++....   .+.+     ....+++.+++.|++.
T Consensus        34 g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  113 (396)
T TIGR00882        34 GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVF  113 (396)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999999988776665443322   1111     2223456677778777


Q ss_pred             hhhhhhhh--hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462          158 GFTNQCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       158 g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                      +...+...  ..+ -.+++.+.++.....-.+|..++|.+...+.
T Consensus       114 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~  157 (396)
T TIGR00882       114 SAGAGAIEAYIEK-VSRNSNFEYGKARMFGCVGWALCASIAGILF  157 (396)
T ss_pred             ccchhhHHHHHHH-hhhhcccccchhhhhcccHHHHHHHHHhhhh
Confidence            66555432  111 1223445667766666788888887765544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.69  E-value=3.1e-07  Score=80.21  Aligned_cols=111  Identities=9%  Similarity=-0.036  Sum_probs=70.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHH--HHHhhh--hhHHHHHHHHHHHhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGS--AIGGAA--LNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~--l~~~~a--~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      .++.+.+.+.....++..++.++.|++.||+|||+.+.....+..+..  +...+.  .+...+++..++.|++.+...+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  331 (394)
T TIGR00883       252 LSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTG  331 (394)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh
Confidence            578888888999999999999999999999999998775555444333  222222  3455556667777877766666


Q ss_pred             hhh--hccccccc-ccccccch-hhhcccCccchhhhhh
Q 027462          163 CRY--ISQKWHHQ-NTEEHSPL-ASKYVLPLVSYPLIFS  197 (223)
Q Consensus       163 ~~~--~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~  197 (223)
                      ...  ..+..+++ |.++++.. .....+|..++|.+..
T Consensus       332 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g  370 (394)
T TIGR00883       332 PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA  370 (394)
T ss_pred             hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHH
Confidence            522  34444433 55555552 3333455555554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.66  E-value=4.5e-08  Score=98.61  Aligned_cols=111  Identities=10%  Similarity=0.112  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHH--HHHHH-HHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           90 QLLAAFTSSLYISGLIASLFASTVTRAFGRKASILV--GGTAF-LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        90 ~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~--~~l~~-~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      ...++..+.+.+...+.+++.|+++||+|||+++..  ...+. ....+.....++++++++.|+++|++.+...++.. 
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            557888889999999999999999999999997633  22222 22222233347899999999999999998877654 


Q ss_pred             -hccccccc-ccccccchhhhcccCccchhhhhhhcc
Q 027462          166 -ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       166 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                       +++.++++ +.++.+.......+|.+++|.+..-+.
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~  168 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT  168 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             77777664 999999999999999999998766554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.64  E-value=4.9e-07  Score=83.90  Aligned_cols=126  Identities=13%  Similarity=0.216  Sum_probs=90.0

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAF-GRKASILVGGTAFLAGSAIGGAAL-NIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l~~~~~~l~~~~a~-~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      ++++.+.+.+.+.+.....++++++|+++||+ |||++++++.++..++.++.+... +...+.++..+.++|.|...+.
T Consensus        41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~  120 (493)
T PRK15462         41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN  120 (493)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccccccc
Confidence            47899999999999999999999999999999 999999999999998887666543 2222333333444455544342


Q ss_pred             h--hhcccccc---cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          164 R--YISQKWHH---QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       164 ~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      .  ..++.+++   ||..+++.....-.+|+.++|.+..-+..         ..+|++.|++
T Consensus       121 ~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~---------~~Gw~~~F~i  173 (493)
T PRK15462        121 VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE---------EYSWAMGFGL  173 (493)
T ss_pred             HHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh---------hhChHHHHHH
Confidence            2  26666643   58888888877777888888886655433         2357776654

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.64  E-value=1e-06  Score=78.76  Aligned_cols=116  Identities=14%  Similarity=0.046  Sum_probs=83.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh-
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR-  164 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~-  164 (223)
                      ++++.+.+++.+...+..+++.++.|++.||+|||+.+..+.....+........++...+++.+++.+++.|...... 
T Consensus       248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~  327 (393)
T PRK15011        248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGM  327 (393)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578888888887778888899999999999999998877666555444444455666667778887777666544332 


Q ss_pred             -hhcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462          165 -YISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                       +..+..+++|.++.+..+....+|..++|.+...+.+
T Consensus       328 ~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~  365 (393)
T PRK15011        328 LYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAE  365 (393)
T ss_pred             HHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2444556667888888888778888888876655443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.63  E-value=4.7e-07  Score=77.56  Aligned_cols=116  Identities=17%  Similarity=0.225  Sum_probs=96.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKA-SILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR  164 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~-~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~  164 (223)
                      +.++.+.+++.+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++...+++..++.|++.+...+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  286 (352)
T cd06174         207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL  286 (352)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence            368899999999999999999999999999999999 9999999999988888888888888889999999988877764


Q ss_pred             h--hccccc-ccccccccchhhhcccCccchhhhhhhccC
Q 027462          165 Y--ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       165 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      .  ..+..+ ++|++.++.......+|..++|.+.....+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~  326 (352)
T cd06174         287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD  326 (352)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3  444454 348888888888888888877777666554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.62  E-value=4.4e-07  Score=81.11  Aligned_cols=113  Identities=18%  Similarity=0.196  Sum_probs=72.2

Q ss_pred             CCChhHHHHHHHHH-HHHHHHHHHhHHhHHhhhchhHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHH-HHhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSL-YISGLIASLFASTVTRAFGRKASIL-VGGTAFLAGSAIGGAALNIYMLIFGRV-LLGVGIGFTNQ  162 (223)
Q Consensus        86 ~~s~~~~~~~~s~~-~lg~~~~~~~~g~l~dr~Grk~~~~-~~~l~~~~~~l~~~~a~~~~~l~v~r~-l~G~g~g~~~~  162 (223)
                      ++++++.+++.+.. ..+..++++..++ .||+|||+.++ .+.++..++..+.++++++..+++.+. +.|.+. ...+
T Consensus        47 ~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~  124 (393)
T PRK15011         47 HARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGS-TANP  124 (393)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-hhHH
Confidence            36899999987665 4566777766677 99999998754 555555566667778888887765544 444433 3333


Q ss_pred             hhh-hcccccccccccc----cchhhhcccCccchhhhhhhcc
Q 027462          163 CRY-ISQKWHHQNTEEH----SPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       163 ~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                      ... ...++.+||.++.    +..++.-++|.+++|.+...+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~  167 (393)
T PRK15011        125 QMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA  167 (393)
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            322 3344544444433    4556666788888887665443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.62  E-value=4.4e-07  Score=80.84  Aligned_cols=115  Identities=13%  Similarity=0.078  Sum_probs=87.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      +++.+.+.+.+...++..++.++.|++.||+|||+.+..+.+...++.+.....++...+.+..++.|++.+...+... 
T Consensus       252 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  331 (406)
T PRK11551        252 LSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYA  331 (406)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            6788889999999999999999999999999999998887666666655555666666666666777776655544432 


Q ss_pred             -hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462          166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                       .++...+ .|++..+.......+|..++|.+..-+..
T Consensus       332 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        332 LAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             HHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence             4455544 38888999988888888888887766654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.60  E-value=1.4e-07  Score=91.37  Aligned_cols=109  Identities=10%  Similarity=-0.082  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcc
Q 027462           91 LLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQ  168 (223)
Q Consensus        91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~  168 (223)
                      ...+...+..++.+++.++.|++.||+|||++++++.++..++.++.++.++...+++.+++.|++.+...+..+  .++
T Consensus       596 ~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE  675 (742)
T TIGR01299       596 MIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVE  675 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777799999999999999999999999999999999888888887777777778888776666555533  556


Q ss_pred             ccccc-ccccccchhhhcccCccchhhhhhhc
Q 027462          169 KWHHQ-NTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       169 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      .++.+ |++++++..+...+|.+++|.+...+
T Consensus       676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L  707 (742)
T TIGR01299       676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSF  707 (742)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66554 88888888888888888888765544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03699 putative transporter; Provisional

Probab=98.59  E-value=4.2e-07  Score=81.17  Aligned_cols=115  Identities=10%  Similarity=-0.041  Sum_probs=85.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      +++..+.+++.+.+.++..++.++.+++.||++||+.+.....+..+..++....++..++.+..++.|++.+...+...
T Consensus       237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~  316 (394)
T PRK03699        237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTII  316 (394)
T ss_pred             CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            36888999999999999999999999999999999998887777666655555666666666677778877766555432


Q ss_pred             --hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462          166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                        ..+..++++.+..+.......+|.+++|.+..-+.
T Consensus       317 ~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~  353 (394)
T PRK03699        317 TLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIV  353 (394)
T ss_pred             HHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence              33334444556667777777788888887765443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.58  E-value=6.7e-07  Score=78.76  Aligned_cols=115  Identities=11%  Similarity=-0.014  Sum_probs=74.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGS-AIGGAALNIYMLIFGRVLLGVGIGFTNQCR  164 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~-l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~  164 (223)
                      +++..+.+++.+...++..++.++.+++.||+|||+.+.++.++..+.. .......+...+.+..++.|++.+...+..
T Consensus       270 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (405)
T TIGR00891       270 GLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGIL  349 (405)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhH
Confidence            3688999999999999999999999999999999999888776553322 223333444455555555555544444431


Q ss_pred             --hhcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462          165 --YISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       165 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                        ...+..++ +|+++++.......+|..++|.+..-+.
T Consensus       350 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~  388 (405)
T TIGR00891       350 PKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLA  388 (405)
T ss_pred             HHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence              13334433 3666666666666666666666544443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.58  E-value=9.6e-07  Score=77.35  Aligned_cols=98  Identities=12%  Similarity=0.075  Sum_probs=80.0

Q ss_pred             CChhHHHHHHHHHH-HHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHh
Q 027462           87 FDSQLLAAFTSSLY-ISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----------LNIYMLIFGRVLLG  154 (223)
Q Consensus        87 ~s~~~~~~~~s~~~-lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----------~~~~~l~v~r~l~G  154 (223)
                      +++++.+.+..... ++..++.+++|++.||+|||+.+..+.++..+...+..+.           ++...+++..++.+
T Consensus       241 ~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  320 (356)
T TIGR00901       241 FSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEA  320 (356)
T ss_pred             CCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHH
Confidence            68888888777655 6788999999999999999999888888777665544432           33456677788889


Q ss_pred             hhhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccch
Q 027462          155 VGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGES  212 (223)
Q Consensus       155 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~  212 (223)
                      ++.+...+.                            ...+..|..|++.||+..++.
T Consensus       321 ~~~~~~~~~----------------------------~~~~~~~~~p~~~~g~~~g~~  350 (356)
T TIGR00901       321 VTGGLGTVA----------------------------FVAFLSKLSNPKFGATQMALL  350 (356)
T ss_pred             HHhHHHHHH----------------------------HHHHHHHhcCCCccHHHHHHH
Confidence            999998898                            899999999999999998864

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.57  E-value=2.4e-07  Score=85.72  Aligned_cols=124  Identities=15%  Similarity=0.099  Sum_probs=85.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-----chhHH-HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-----GRKAS-ILVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGI  157 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-----Grk~~-~~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~  157 (223)
                      .+..+.+.+ +...... +..++.|++.||+     |||+. ++++.++..++....++.   .++..+.+.+++.+++.
T Consensus        44 ~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~  121 (491)
T PRK11010         44 IDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCS  121 (491)
T ss_pred             CCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence            577788876 3333333 6889999999999     99885 556666666666656554   46778888899999887


Q ss_pred             hhhhhhhh--hccccc-ccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          158 GFTNQCRY--ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       158 g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      +...+...  ..+.++ ++|+++.+....++.+|.++++....-+...        ..+||+.|.+
T Consensus       122 a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--------~~GWr~~f~i  179 (491)
T PRK11010        122 ASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--------YLGWQGMYWL  179 (491)
T ss_pred             HHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCHHHHHHH
Confidence            76555432  444444 4588888989998888888887655544431        1368877754

>TIGR00895 2A0115 benzoate transport

Probab=98.55  E-value=1.1e-06  Score=76.92  Aligned_cols=97  Identities=15%  Similarity=0.198  Sum_probs=69.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYI  166 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~~  166 (223)
                      .+..+.+++.+...++..++.++.+++.||+|||+.+....+...+..++.....+...+.+..++.|++.+...+.   
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  358 (398)
T TIGR00895       282 FSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSG---  358 (398)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH---
Confidence            57888899999999999999999999999999995544333333333333222455566677788889888887777   


Q ss_pred             cccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccc
Q 027462          167 SQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGE  211 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~  211 (223)
                                               ...+..|..|++.|+.+.++
T Consensus       359 -------------------------~~~~~~~~~~~~~~g~~~g~  378 (398)
T TIGR00895       359 -------------------------LYALMALFYPTAIRATGVGW  378 (398)
T ss_pred             -------------------------HHHHHhhcCCHHHHHHHHHH
Confidence                                     55566666666666666554

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.54  E-value=1.7e-06  Score=75.68  Aligned_cols=114  Identities=13%  Similarity=0.072  Sum_probs=83.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      .++.+.+++.+.......++.++.|++.||+|||+.+.++.++..+..+.....++.+.+++.+++.|++.+...+... 
T Consensus       232 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  311 (375)
T TIGR00899       232 LPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGML  311 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788888888777777788889999999999999998887776665555555566777777788888888777655432 


Q ss_pred             -hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462          166 -ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       166 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                       ..+..++++.++++.+.....+|..++|.+..-+.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~  347 (375)
T TIGR00899       312 YFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILA  347 (375)
T ss_pred             HHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33444555567888888777778777777655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.51  E-value=2.9e-07  Score=81.93  Aligned_cols=77  Identities=19%  Similarity=0.172  Sum_probs=72.1

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      +.+..+...++...++|..+++..+|.++|++|||+.+.+..+...+...+.+.++++.++++.|.+.|+|.|+ .+.
T Consensus       109 ~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv  185 (528)
T KOG0253|consen  109 GPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPV  185 (528)
T ss_pred             chhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999998 554

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.50  E-value=1.8e-06  Score=74.68  Aligned_cols=98  Identities=16%  Similarity=0.125  Sum_probs=78.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHhhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALN-IYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~-~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      .++.+.+++.+...++..++.++.+++.||++||+.+..+.++..++.+...+.++ .+.+++..++.|++.+...+.  
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--  321 (365)
T TIGR00900       244 RGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVP--  321 (365)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH--
Confidence            58889999999999999999999999999999999988887777777666666664 777788889999999888777  


Q ss_pred             hcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccch
Q 027462          166 ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGES  212 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~  212 (223)
                                                ...+..|..|++.|+++.++.
T Consensus       322 --------------------------~~~~~~~~~~~~~~g~~~~~~  342 (365)
T TIGR00900       322 --------------------------QGTLLQRRVPAELLGRVFGAQ  342 (365)
T ss_pred             --------------------------HHHHHHHhCCHHHHHHHHHHH
Confidence                                      555666666666666666543

>TIGR00901 2A0125 AmpG-related permease

Probab=98.49  E-value=8.8e-07  Score=77.60  Aligned_cols=131  Identities=9%  Similarity=0.020  Sum_probs=84.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-----chhHHH-HHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-----GRKASI-LVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGI  157 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-----Grk~~~-~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~  157 (223)
                      ++.++.+++.+. .+...+ .++.|++.||+     |||+.+ +.+.++..+..+..++.   .++..+....++.+++.
T Consensus        20 ~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~   97 (356)
T TIGR00901        20 VSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFS   97 (356)
T ss_pred             CCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHH
Confidence            799999998655 444444 89999999998     898874 55666666665555565   34444555556666655


Q ss_pred             hhhhhhhh--hcccc-cccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          158 GFTNQCRY--ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       158 g~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      +...+...  ..+.. +++|+++.+....++.+|.++++.+..-+.+... +....-..||+.|.+
T Consensus        98 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g-~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        98 ATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF-ANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccccccHHHHHH
Confidence            54444322  55555 4459999999999999999988877654443210 000112248887764

>PRK12382 putative transporter; Provisional

Probab=98.45  E-value=1.2e-06  Score=77.75  Aligned_cols=110  Identities=10%  Similarity=0.001  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccc
Q 027462           92 LAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQK  169 (223)
Q Consensus        92 ~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~  169 (223)
                      .++..+...++..++.++.|++.||+|+|+.+..+..+..++.++..+.++...+.+..++.|++.+...+...  ..+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  330 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR  330 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            45556667788889999999999999999999988888888877777777777777888999998887666532  4445


Q ss_pred             cc-ccccccccchhhhcccCccchhhhhhhccC
Q 027462          170 WH-HQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       170 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      +. ++|+++++.......+|..++|.+...+.+
T Consensus       331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~  363 (392)
T PRK12382        331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT  363 (392)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54 458889999988888888888876665543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.44  E-value=1.9e-06  Score=76.74  Aligned_cols=114  Identities=10%  Similarity=0.072  Sum_probs=95.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      .++.+.+.+.+...++..+..++.+++.||+|+|+.+.++.++..+..+..+++++.+.+++.+.+.|+..+...+... 
T Consensus       237 ~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~  316 (382)
T TIGR00902       237 ISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMR  316 (382)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999988888899999999999999999888777643 


Q ss_pred             -hcccccc-cccccccchh-hhcccCccchhhhhhhccC
Q 027462          166 -ISQKWHH-QNTEEHSPLA-SKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 -~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p  201 (223)
                       +++. ++ +++.+++.++ ..+++|.+++|.+...+.+
T Consensus       317 ~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~  354 (382)
T TIGR00902       317 YIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP  354 (382)
T ss_pred             HHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             5555 44 3778888886 4567888877776655544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.44  E-value=2.3e-06  Score=76.09  Aligned_cols=109  Identities=13%  Similarity=0.037  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcc
Q 027462           91 LLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQ  168 (223)
Q Consensus        91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~  168 (223)
                      +.++..+.+.++..++.++.|++.||+|+|+.+..+..+..++.++..+.++...+++..++.|++.+...+...  ..+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  329 (399)
T PRK05122        250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK  329 (399)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            345566777888899999999999999999999888888888777777777777778888999999887665432  333


Q ss_pred             ccc-ccccccccchhhhcccCccchhhhhhhc
Q 027462          169 KWH-HQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       169 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      ..+ ++|+++++.+.....+|..++|.+....
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  361 (399)
T PRK05122        330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLV  361 (399)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443 3488888888887777766666544433

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.42  E-value=2.7e-06  Score=76.55  Aligned_cols=114  Identities=14%  Similarity=-0.009  Sum_probs=68.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh---hhh-----HHHHHHHHHHHhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA---ALN-----IYMLIFGRVLLGVGI  157 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~---a~~-----~~~l~v~r~l~G~g~  157 (223)
                      ++++.+.+++.+...++..+++++.|++.||+|||++++++..+..++......   .+.     +...++++++.|.+.
T Consensus        42 g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (420)
T PRK09528         42 GLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGF  121 (420)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            479999999999999999999999999999999999998876665544322111   111     111122233333222


Q ss_pred             hhhhhhhh-hcccccccccccccchhhhcccCccchhhhhhhc
Q 027462          158 GFTNQCRY-ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       158 g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      ....+... ..++..+++++.++.......+|..++|.+..-+
T Consensus       122 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l  164 (420)
T PRK09528        122 LAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGIL  164 (420)
T ss_pred             ccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHH
Confidence            22222211 1122233355666666666667777666654433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.41  E-value=1.8e-06  Score=77.36  Aligned_cols=124  Identities=15%  Similarity=0.095  Sum_probs=86.1

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-----chhH-HHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-----GRKA-SILVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGI  157 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-----Grk~-~~~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~  157 (223)
                      ++.++++++......  .+..++.|++.||+     |||+ .++++.++..++....++.   .+++.+++..++.++..
T Consensus        31 ~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~  108 (402)
T PRK11902         31 LDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLS  108 (402)
T ss_pred             CCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            799999999777776  68899999999999     8875 6777777776666666665   34566666666666665


Q ss_pred             hhhhhhhh--hccccccc-ccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          158 GFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       158 g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      +...++..  ..+..+++ |+++.+....++.+|.++++.+..-+.+.        ..+||+.|.+
T Consensus       109 ~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~--------~~gw~~~f~i  166 (402)
T PRK11902        109 ASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR--------VLGWGNTYLL  166 (402)
T ss_pred             HHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc--------ccCHHHHHHH
Confidence            55444422  44445444 88888888888888888777655444321        1267776654

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.40  E-value=2.8e-06  Score=73.75  Aligned_cols=114  Identities=14%  Similarity=0.065  Sum_probs=71.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhH--HHHH------HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKA--SILV------GGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIG  158 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~--~~~~------~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g  158 (223)
                      .++.+.+++.+...++..++.++.|++.||+|||+  ....      +.++..+........++....+....+.+++.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (399)
T TIGR00893       248 LSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG  327 (399)
T ss_pred             ccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh
Confidence            57888899999999999999999999999999985  1111      111111111111112233333333344444443


Q ss_pred             hhhhhhh--hccccccc-ccccccchhhhcccCccchhhhhhhccC
Q 027462          159 FTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       159 ~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                       ..+...  ..+..+++ |+++++.......+|..++|.+..-+..
T Consensus       328 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~  372 (399)
T TIGR00893       328 -AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA  372 (399)
T ss_pred             -hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc
Confidence             333322  55555554 8889999988888888888887666554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.38  E-value=2.6e-06  Score=77.98  Aligned_cols=135  Identities=12%  Similarity=-0.017  Sum_probs=86.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAI--GGAALNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~--~~~a~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      +++..+.++..+...++..++.++.|++.||+|||+.+.....+..++..+  ....++...+.+.+++.|++.......
T Consensus       290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  369 (467)
T PRK09556        290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL  369 (467)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence            468889999999999999999999999999999988776654444333222  222345555666777777543222221


Q ss_pred             --hhhccccccc-ccccccchhhhccc-CccchhhhhhhccCCCCCcc---cccchhhhhhhhh
Q 027462          164 --RYISQKWHHQ-NTEEHSPLASKYVL-PLVSYPLIFSITAPKRSRGA---GAGESPWQWLLLL  220 (223)
Q Consensus       164 --~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~rg~---~~~~~~~~~~~~l  220 (223)
                        ....+.++++ ++++.++.+..-.+ |..++|.+...+.++.+-|.   +-...+|++.|.+
T Consensus       370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~  433 (467)
T PRK09556        370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAA  433 (467)
T ss_pred             HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHH
Confidence              1234555554 88999998766554 76778888777776322222   1112347766643

>PRK09952 shikimate transporter; Provisional

Probab=98.37  E-value=4.4e-06  Score=75.94  Aligned_cols=77  Identities=10%  Similarity=0.041  Sum_probs=49.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh---h-hhHHHHHHHHHHHhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA---A-LNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~---a-~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      ++......+.........++.++.|++.||+|||+.++.+.++..++.+....   . ++...+++..++.+++.+...+
T Consensus       283 ~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  362 (438)
T PRK09952        283 LPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVC  362 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555566677888899999999999999988877665544332222   1 2233334455666777666555


Q ss_pred             h
Q 027462          163 C  163 (223)
Q Consensus       163 ~  163 (223)
                      .
T Consensus       363 ~  363 (438)
T PRK09952        363 V  363 (438)
T ss_pred             H
Confidence            5

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.35  E-value=5.3e-06  Score=75.39  Aligned_cols=116  Identities=8%  Similarity=0.009  Sum_probs=86.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh--h--hhHHHHHHHHHHHhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA--A--LNIYMLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~--a--~~~~~l~v~r~l~G~g~g~~~  161 (223)
                      ++++.+.+++.....++..++.++.|++.||+|||+.+.++..+..++.++..+  .  .+...++...++.|+|.+...
T Consensus       287 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~  366 (485)
T TIGR00711       287 GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFF  366 (485)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            368899999999999999999999999999999999999998888877766552  1  345556666788898888766


Q ss_pred             hhhh--hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462          162 QCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       162 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      +...  ..+..++ +++++.+..+....+|..+++.+...+..
T Consensus       367 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       367 MPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5432  2223333 37777777777777777777766655543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.32  E-value=6.7e-06  Score=76.02  Aligned_cols=104  Identities=18%  Similarity=0.205  Sum_probs=75.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh----hH---HH-H-HHHHHHHh--h
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL----NI---YM-L-IFGRVLLG--V  155 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~----~~---~~-l-~v~r~l~G--~  155 (223)
                      +++.+..+.+....+...+..+++.++.||+|||+.++++..+..+..++.....    ..   .. + +++.++..  +
T Consensus       302 ~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f  381 (485)
T KOG0569|consen  302 FTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISF  381 (485)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            7899999999999999999999999999999999999999999988877666541    11   11 1 22222222  2


Q ss_pred             hhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccc---hhhhhhhh
Q 027462          156 GIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGE---SPWQWLLL  219 (223)
Q Consensus       156 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~---~~~~~~~~  219 (223)
                      +.|. -+.                            ...+.+|++|++-|..+.+.   .+|-.+|.
T Consensus       382 ~~G~-gpi----------------------------~~fi~aELf~~~~R~aa~s~~~~~~w~~~fi  419 (485)
T KOG0569|consen  382 AIGP-GPI----------------------------PWFIGAELFPQSARSAAQSVATAVNWLSNFI  419 (485)
T ss_pred             hcCC-Cch----------------------------hHHHHHHhCCccchHHHHHHHHHHHHHHHHH
Confidence            2222 122                            56789999999999988875   35555544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.31  E-value=7.6e-06  Score=74.09  Aligned_cols=45  Identities=11%  Similarity=0.243  Sum_probs=37.1

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHH
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFL  131 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~  131 (223)
                      ++..+.+...+...+...++.++.|++.||+|||+.+.++.++..
T Consensus       276 ~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~  320 (432)
T PRK10406        276 MHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAA  320 (432)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            577788888888888888889999999999999998877665443

>PRK15075 citrate-proton symporter; Provisional

Probab=98.31  E-value=9.4e-06  Score=73.52  Aligned_cols=112  Identities=13%  Similarity=0.011  Sum_probs=64.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHH-HHh---hhhhHHHHHHHHHHHhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSA-IGG---AALNIYMLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l-~~~---~a~~~~~l~v~r~l~G~g~g~~~  161 (223)
                      +++..+.++......++..++.++.|++.||+|||+++..+.++..+..+ ...   ..++...+.+..++.|++.+...
T Consensus       270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  349 (434)
T PRK15075        270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN  349 (434)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence            36778888888888899999999999999999999988776554432221 111   12233333333444445544433


Q ss_pred             hhh--hhcccccc-cccccccch-hhhcccCccchhhhhh
Q 027462          162 QCR--YISQKWHH-QNTEEHSPL-ASKYVLPLVSYPLIFS  197 (223)
Q Consensus       162 ~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~  197 (223)
                      +..  ..++.+++ +|++.++.. +.+..++..++|.+..
T Consensus       350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g  389 (434)
T PRK15075        350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIST  389 (434)
T ss_pred             hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHH
Confidence            321  13444444 366666653 2233333334555443

>TIGR00889 2A0110 nucleoside transporter

Probab=98.30  E-value=2.4e-06  Score=77.40  Aligned_cols=114  Identities=11%  Similarity=0.060  Sum_probs=89.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-h---hHHHHHHHHHHHhhhhhhhhhh
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-L---NIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-~---~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      +....+.+.+...++..++.++.+++.||+|||+++.++.++..++..+.... .   ++..+++.+++.|++.+...+.
T Consensus       249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~  328 (418)
T TIGR00889       249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS  328 (418)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999888776655553 2   2456677889999888776554


Q ss_pred             hh--hccccccc-ccccccchh-hhcccCccchhhhhhhccC
Q 027462          164 RY--ISQKWHHQ-NTEEHSPLA-SKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       164 ~~--~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~p  201 (223)
                      ..  ..+..+++ |+++++..+ ..+++|.+++|.+...+.+
T Consensus       329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~  370 (418)
T TIGR00889       329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVE  370 (418)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            32  56666554 899999997 6788888888887765554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.28  E-value=3.8e-06  Score=74.67  Aligned_cols=114  Identities=8%  Similarity=0.056  Sum_probs=86.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      .++.+.+.+.+...++..+..++.+++.||+|+|+.+..+.++..++.+..+.+++.+.+++..++.|++.+...+... 
T Consensus       237 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  316 (382)
T PRK11128        237 YSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMR  316 (382)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5888889998888899999999999999999999999999988888877777888888888899999998887655432 


Q ss_pred             -hcccccccccccccchh-hhcccCccchhhhhhhcc
Q 027462          166 -ISQKWHHQNTEEHSPLA-SKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       166 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  200 (223)
                       .++.-.+++.+.++.+. ...++|..++|.+...+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~  353 (382)
T PRK11128        317 YIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLY  353 (382)
T ss_pred             HHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33333334566777775 434556556666544444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.28  E-value=8.3e-06  Score=73.22  Aligned_cols=116  Identities=6%  Similarity=0.037  Sum_probs=88.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      +.++.+.+++.+...++..++.++.+++.||.++++.+..+.++..++.++..+.++...+.+..++.|++.+...+...
T Consensus       255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  334 (417)
T PRK10489        255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQY  334 (417)
T ss_pred             CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788899999999999999999999999998878888888887777777777777777777788888888776555432


Q ss_pred             --hccccccc-ccccccchhhhcccCccchhhhhhhccC
Q 027462          166 --ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                        ..+..+++ |.++.+.......+|..++|.+...+..
T Consensus       335 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~  373 (417)
T PRK10489        335 TLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA  373 (417)
T ss_pred             HHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence              34444443 7888888877777777777776655543

>TIGR00896 CynX cyanate transporter

Probab=98.27  E-value=6.9e-06  Score=71.99  Aligned_cols=111  Identities=14%  Similarity=0.061  Sum_probs=75.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-GRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      .+..+.+.+.+...++.+++.++.|++.||+ +||+.+.++.++..++.+...+.++..... .-++.|++.|...+...
T Consensus       229 ~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~  307 (355)
T TIGR00896       229 ASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLAL  307 (355)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHH
Confidence            5888999999999999999999999999999 566677777777777666555554322222 34677888887766532


Q ss_pred             --hccccc--ccccccccchhhhcccCccchhhhhhh
Q 027462          166 --ISQKWH--HQNTEEHSPLASKYVLPLVSYPLIFSI  198 (223)
Q Consensus       166 --~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (223)
                        ..++..  ++++..++...+...++..++|.+..-
T Consensus       308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~  344 (355)
T TIGR00896       308 TLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV  344 (355)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              333332  235666666666555555566654433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.27  E-value=8.5e-06  Score=73.81  Aligned_cols=77  Identities=9%  Similarity=-0.079  Sum_probs=65.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhch-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGR-KASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Gr-k~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      +++.++.+++.+...++..+++++.|.+.||+|| |+++.++.++..+......+.++++.+++.|++.|++.+...+
T Consensus        34 g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  111 (418)
T TIGR00889        34 HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIA  111 (418)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHH
Confidence            4799999999999999999999999999999965 7788888888877777777888888888999988886654444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.26  E-value=1.4e-05  Score=73.05  Aligned_cols=116  Identities=9%  Similarity=-0.076  Sum_probs=79.1

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA--LNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a--~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      +++..+.+++.+...++..++.++.|++.||+|||+++.++.++..+..+.....  .+...+.+..++.++......+.
T Consensus       307 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (496)
T PRK03893        307 GYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGL  386 (496)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchh
Confidence            3689999999999999999999999999999999999888776665554433322  23333333334333222112222


Q ss_pred             h--hhcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462          164 R--YISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       164 ~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      .  ...+.+++ +|.++++.......+|..++|.+..-+.+
T Consensus       387 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~  427 (496)
T PRK03893        387 LPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ  427 (496)
T ss_pred             hHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence            1  24555554 48899999888888888888877665544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.23  E-value=1.1e-05  Score=71.80  Aligned_cols=114  Identities=11%  Similarity=0.103  Sum_probs=84.7

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--  165 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--  165 (223)
                      +....+.+.+...+...++.+..+++.||+|||+.+.++.++..+...+...+++.+++++.+++.|++.+.......  
T Consensus       252 ~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  331 (396)
T TIGR00882       252 GTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKY  331 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556778888888888899999999999999999999999888888777767777888888889999988765443221  


Q ss_pred             hccccccc-ccccccc-hhhhcccCccchhhhhhhccC
Q 027462          166 ISQKWHHQ-NTEEHSP-LASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      .....++| +...++. .+....+|..++|.+.....+
T Consensus       332 ~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~  369 (396)
T TIGR00882       332 ITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD  369 (396)
T ss_pred             HHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence            33334444 4455555 456677888888876666655

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.23  E-value=9.6e-06  Score=72.95  Aligned_cols=115  Identities=14%  Similarity=0.100  Sum_probs=89.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh--
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR--  164 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~--  164 (223)
                      .+..+.+++.+...+...++.++.|++.||+|+|+.+.++.++..++.++.+++++...+++.+++.|++.+......  
T Consensus       259 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  338 (420)
T PRK09528        259 QGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFK  338 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366778999999999999999999999999999999999999888888888888888888888999988877655443  


Q ss_pred             hhccccccc-ccccccc-hhhhcccCccchhhhhhhccC
Q 027462          165 YISQKWHHQ-NTEEHSP-LASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       165 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      +.++..++| +.+.++. .+....+|.+++|.+..-+.+
T Consensus       339 ~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~  377 (420)
T PRK09528        339 YITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD  377 (420)
T ss_pred             HHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence            244555554 6666555 456667888877776655544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.23  E-value=1.2e-05  Score=81.01  Aligned_cols=108  Identities=11%  Similarity=0.015  Sum_probs=82.8

Q ss_pred             CChh-HHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           87 FDSQ-LLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        87 ~s~~-~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      ++.. ..+++.+...++.+++.++.+++.||+++|+.+.++.++..++.++..+..+...+++..++.|++.+...+...
T Consensus       265 ~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  344 (1146)
T PRK08633        265 LDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLN  344 (1146)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            5777 889999999999999999999999999999888888888887777777777877788888888988887666532


Q ss_pred             --hcccccc-cccccccchhhhcccCccchhh
Q 027462          166 --ISQKWHH-QNTEEHSPLASKYVLPLVSYPL  194 (223)
Q Consensus       166 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  194 (223)
                        ......+ .|+++++..+....+|.++++.
T Consensus       345 ~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~  376 (1146)
T PRK08633        345 ALIQFRAPEKELGKVLAANNFLQNVGMLLFLA  376 (1146)
T ss_pred             HHHhhcCCccchhhhhHHHHHHHHHHHHHHHH
Confidence              3333333 3777777776666666554443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.20  E-value=2.3e-05  Score=72.47  Aligned_cols=115  Identities=10%  Similarity=-0.043  Sum_probs=83.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA---ALNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~---a~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      +.++.+.+.......++..++.++.|++.||+|+|+.+..+.++..++.+....   ..+.....+..++.|+|.|...+
T Consensus       291 g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~  370 (495)
T PRK14995        291 GLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALL  370 (495)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHH
Confidence            468999999999999999999999999999999999988888877776654433   23444556677888999888766


Q ss_pred             hhh--hcccc-cccccccccchhhhcccCccchhhhhhhcc
Q 027462          163 CRY--ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       163 ~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                      ...  .-... +++++.+.+..+....+|..+++.+...++
T Consensus       371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        371 ASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             HHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432  22222 334677777777777777666666555544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.20  E-value=2.8e-05  Score=66.98  Aligned_cols=100  Identities=23%  Similarity=0.279  Sum_probs=82.0

Q ss_pred             CC-hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHhhhhhhhhh
Q 027462           87 FD-SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL---NIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        87 ~s-~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~---~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      ++ ..+.+++.+...+...++.++.+++.||+|+|+...+......+..+...+..   +..+.++.-++.|++.+...+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  318 (352)
T PF07690_consen  239 FSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFP  318 (352)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            57 78899999999999999999999999999998887777777777666655543   456677778889999998888


Q ss_pred             hhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhh
Q 027462          163 CRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPW  214 (223)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~  214 (223)
                      .                            ...+..+..|++.||++.++.+.
T Consensus       319 ~----------------------------~~~~~~~~~~~~~~g~~~g~~~~  342 (352)
T PF07690_consen  319 I----------------------------LFSLIQELVPPEYRGTAFGLFNS  342 (352)
T ss_dssp             H----------------------------HHHHHHCCCHTCHHHHHHHHHHH
T ss_pred             H----------------------------HHHHHHHhCCHHHHHHHHHHHHH
Confidence            8                            78888999999999988887543

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00897 2A0118 polyol permease family

Probab=98.19  E-value=1.2e-05  Score=72.09  Aligned_cols=115  Identities=10%  Similarity=0.038  Sum_probs=80.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHH-HHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASIL-VGGTAFLAGSAIGGA-----ALNIYMLIFGRVLLGVGIGFT  160 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~-~~~l~~~~~~l~~~~-----a~~~~~l~v~r~l~G~g~g~~  160 (223)
                      ++..+.+++.+...++..++.++.|++.||+|||+.+. .+.+...+..+...+     .++...+++..++.|++.+..
T Consensus       254 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~  333 (402)
T TIGR00897       254 FSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGY  333 (402)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence            57888888888899999999999999999999987764 233333333222222     234555666777778777655


Q ss_pred             hhhhh-hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462          161 NQCRY-ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       161 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      .+... .++..+++|+++++.++....+|..++|.+...+..
T Consensus       334 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~  375 (402)
T TIGR00897       334 VPLAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG  375 (402)
T ss_pred             HHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43322 333345568999999999999998888887766654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10504 putative transporter; Provisional

Probab=98.19  E-value=1.8e-05  Score=72.01  Aligned_cols=113  Identities=12%  Similarity=0.040  Sum_probs=78.7

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      .++.+.+++.....++..++.++.+++.||+|||+.+..+.++..+..++..+.   .+...+.+..++.|++.+...+.
T Consensus       294 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  373 (471)
T PRK10504        294 FSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSS  373 (471)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            578888999988889999999999999999999999998888777766555443   23333344556667766665554


Q ss_pred             hh--hccccccc-ccccccchhhhcccCccchhhhhhhc
Q 027462          164 RY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       164 ~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      ..  ..+...++ ++.+++..+....+|..+++.+..-+
T Consensus       374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        374 MNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            22  33334444 77777777777777766666654433

>PRK03545 putative arabinose transporter; Provisional

Probab=98.17  E-value=1.2e-05  Score=71.52  Aligned_cols=113  Identities=10%  Similarity=0.038  Sum_probs=77.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGS-AIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~-l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      .+..+.+++.+...++..++.++.+++.||++||+... +..+..++. ++....++...+++..++.|++.+...+...
T Consensus       238 ~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  316 (390)
T PRK03545        238 LSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQ  316 (390)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHH
Confidence            57888999999999999999999999999999887544 444443333 3334456667777778888887655444322


Q ss_pred             --hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462          166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                        ..+..++.|.++++.+...+.+|..++|.+...+.
T Consensus       317 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~  353 (390)
T PRK03545        317 VKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVS  353 (390)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              33344455777888887777777766766554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.13  E-value=2.5e-05  Score=73.13  Aligned_cols=107  Identities=17%  Similarity=0.235  Sum_probs=77.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhhhhhhh
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----LNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      |+..++++..+..+-.++.++++|.++||++||++++.+-++..+..++.++.     .+.+.+++..++.|++.+...+
T Consensus        43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~P  122 (524)
T PF05977_consen   43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNP  122 (524)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999998887665544432     3667788889999999998888


Q ss_pred             hhh--hcccccc-cccccccchhhhcccCccchhh
Q 027462          163 CRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPL  194 (223)
Q Consensus       163 ~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  194 (223)
                      +..  +++.-++ +-+.+.+..+..+.+.-+++|.
T Consensus       123 A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPa  157 (524)
T PF05977_consen  123 AWQAIIPELVPKEDLPAANALNSISFNIARIIGPA  157 (524)
T ss_pred             HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccch
Confidence            732  3333322 2344444444444444444444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.12  E-value=2.3e-05  Score=72.61  Aligned_cols=110  Identities=14%  Similarity=0.119  Sum_probs=72.1

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHh----hhchhHHHHHH-HHHHHHHHHHHhhhhhHH-----------------
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTR----AFGRKASILVG-GTAFLAGSAIGGAALNIY-----------------  144 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~d----r~Grk~~~~~~-~l~~~~~~l~~~~a~~~~-----------------  144 (223)
                      ++....+++.....+..++..++.|.++|    |+|||+++++. .+...++.++.++++++.                 
T Consensus        36 ~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~  115 (477)
T TIGR01301        36 IPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAII  115 (477)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHH
Confidence            68999999999999999999999999999    59999998875 444445555666654432                 


Q ss_pred             HHHHHHHHHhhhhhhhhh-hhh-hcccccc--cc-cccccchhhhcccCccchhhhh
Q 027462          145 MLIFGRVLLGVGIGFTNQ-CRY-ISQKWHH--QN-TEEHSPLASKYVLPLVSYPLIF  196 (223)
Q Consensus       145 ~l~v~r~l~G~g~g~~~~-~~~-~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~  196 (223)
                      .++++-.+..++.....+ .++ ..+...+  || ..+.+..+..-.+|.++++.+.
T Consensus       116 ~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g  172 (477)
T TIGR01301       116 VFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAG  172 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112222222223332222 222 5555533  23 4678887777788888777654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.12  E-value=1.9e-05  Score=71.76  Aligned_cols=108  Identities=11%  Similarity=0.117  Sum_probs=67.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh--hH--HHHHHHHHHHhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL--NI--YMLIFGRVLLGVGIGFTN-  161 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~--~~--~~l~v~r~l~G~g~g~~~-  161 (223)
                      .+.....+......+..+++.++.+++.||+|||+.++.+.++..++.++.+...  +.  ...+...++.+.+.+... 
T Consensus       303 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (479)
T PRK10077        303 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWG  382 (479)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcccc
Confidence            4555566666777788899999999999999999999999998888776655431  11  122223333333333221 


Q ss_pred             hhh--hhccccccc-ccccccchhhhcccCccchhh
Q 027462          162 QCR--YISQKWHHQ-NTEEHSPLASKYVLPLVSYPL  194 (223)
Q Consensus       162 ~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  194 (223)
                      +..  ..++.+.++ |+.+++.......+|.++++.
T Consensus       383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~  418 (479)
T PRK10077        383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSW  418 (479)
T ss_pred             chhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            221  144455443 777777766666666655543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.12  E-value=2.1e-05  Score=69.82  Aligned_cols=110  Identities=13%  Similarity=-0.036  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcc
Q 027462           91 LLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQ  168 (223)
Q Consensus        91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~  168 (223)
                      ..+.+.+...++..++.+..|++.||+|||+.+..+.++..++.+.....++...+.+.+++.|++.+...+...  ..+
T Consensus       259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  338 (408)
T PRK09874        259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY  338 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence            345666777788889999999999999999999988887777776666667777778889999998887766532  333


Q ss_pred             cccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462          169 KWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       169 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                      ..++ ++++.++.......+|..++|.+..-+.
T Consensus       339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~  371 (408)
T PRK09874        339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS  371 (408)
T ss_pred             hCCcccceeeehHHHHHHHHHHHhhHHHHHHHH
Confidence            3333 4788888888888888888887655443

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.12  E-value=3e-05  Score=69.44  Aligned_cols=113  Identities=8%  Similarity=0.018  Sum_probs=71.1

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh--hhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGI--GFTNQC-  163 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~--g~~~~~-  163 (223)
                      .++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+.-++.|++.  ...... 
T Consensus       263 ~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (426)
T PRK12307        263 FDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLV  342 (426)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHH
Confidence            57788888888899999999999999999999999988887776655443332221111112222233221  111111 


Q ss_pred             -hhhccccccc-ccccccchhhhcccCccchhhhhhhc
Q 027462          164 -RYISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       164 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                       ....+.+.++ |+++++.......+|.+++|.+..-+
T Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l  380 (426)
T PRK12307        343 PKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL  380 (426)
T ss_pred             HHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence             1244555443 78888877777777777777755433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.10  E-value=4.2e-05  Score=65.09  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=86.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-------LNIYMLIFGRVLLGVGIG  158 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-------~~~~~l~v~r~l~G~g~g  158 (223)
                      +++.++...+.++-.+|..+ .++.|.+.|++|++.++.+|.....+++....++       .+++.+.+..++.|.+.+
T Consensus        33 ~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~  111 (250)
T PF06813_consen   33 GYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSC  111 (250)
T ss_pred             CCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHH
Confidence            47999999999999999987 4888999999999999999999999998877664       345666676777776655


Q ss_pred             hhhhhhh-hc-ccccccccccccchhhhcccCccchhhhhhhccCCC
Q 027462          159 FTNQCRY-IS-QKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKR  203 (223)
Q Consensus       159 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  203 (223)
                      ....+.. .+ ..|++.|+.+.++.-+..++++.+...+-.-+++.+
T Consensus       112 ~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~  158 (250)
T PF06813_consen  112 WFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD  158 (250)
T ss_pred             HhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCC
Confidence            5433321 11 234445777888888888877776665555555553

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.10  E-value=9.7e-05  Score=64.73  Aligned_cols=109  Identities=12%  Similarity=0.159  Sum_probs=77.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----LNIYMLIFGRVLLGVGIGFT  160 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----~~~~~l~v~r~l~G~g~g~~  160 (223)
                      +.++.+.+++.+...++..++.++.+++.||+|+|+.+..+..+..++.++....     +....+++..++.|++.+..
T Consensus       238 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  317 (385)
T TIGR00710       238 GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMI  317 (385)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            3688899999999999999999999999999999999888887777766555443     23344455566777877766


Q ss_pred             hhhhh--hcccccccccccccchhhhc-ccCccchhh
Q 027462          161 NQCRY--ISQKWHHQNTEEHSPLASKY-VLPLVSYPL  194 (223)
Q Consensus       161 ~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  194 (223)
                      .+...  ..+..+++++++.+..+... .+|.+.+|.
T Consensus       318 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~  354 (385)
T TIGR00710       318 SSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYL  354 (385)
T ss_pred             HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            65432  33444556777777766554 355555554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.07  E-value=3.4e-05  Score=70.57  Aligned_cols=115  Identities=9%  Similarity=-0.024  Sum_probs=85.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhh--hchhHHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRA--FGRKASILVG--GTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr--~Grk~~~~~~--~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      ++..+.+++.+...++..++.++.|++.||  +++|+...+.  .++..++.++..+.++++.+++.+++.|++.+...+
T Consensus       273 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~  352 (455)
T TIGR00892       273 VDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGA  352 (455)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHH
Confidence            688999999999999999999999999997  3444433333  333334445556677888888889999998887666


Q ss_pred             hhh--hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462          163 CRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       163 ~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      ...  ..+..++ ++.+.++.+.....+|.+++|.+..-+..
T Consensus       353 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       353 LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence            543  4444444 48899999999999999999987765554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.07  E-value=3.2e-05  Score=69.22  Aligned_cols=112  Identities=11%  Similarity=0.037  Sum_probs=74.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA-ALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~-a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      .+..+.+...+.+.++..++.++.+++.||+|||+.+.++..+..++.++... .++...+.  -++.|++.+...+...
T Consensus       237 ~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~  314 (393)
T PRK09705        237 ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCL  314 (393)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhccchHHHHH
Confidence            68888999999999999999999999999999999988887777666554432 33322222  2455666666555432


Q ss_pred             --hcccccc--cccccccchhhhcccCccchhhhhhhcc
Q 027462          166 --ISQKWHH--QNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       166 --~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                        ..+...+  .+++.++.......++..++|.+..-..
T Consensus       315 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~  353 (393)
T PRK09705        315 LLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR  353 (393)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2333322  3666777666666666666665544333

>TIGR01272 gluP glucose/galactose transporter

Probab=98.07  E-value=4.7e-05  Score=66.39  Aligned_cols=114  Identities=11%  Similarity=0.046  Sum_probs=81.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      ++++++.+...+.+..+..++.++.+++.||+|+|+.+.++.++..++.++....++.. ..+.-++.|++.+..++...
T Consensus       174 g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~  252 (310)
T TIGR01272       174 GLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIF  252 (310)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999988888877777665554443322 22344577888888888743


Q ss_pred             --hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462          166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                        ..+...++..++-++. ....+|..+.|.+...+.+
T Consensus       253 s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       253 SLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLAD  289 (310)
T ss_pred             HHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence              3333333333444554 4445888889987766655

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.07  E-value=4e-05  Score=68.06  Aligned_cols=111  Identities=14%  Similarity=0.093  Sum_probs=75.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      .++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.+...  . ........++.|++.+...+... 
T Consensus       232 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~  308 (381)
T PRK03633        232 MSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMA  308 (381)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHH
Confidence            5788889999999999999999999999999999998888777766554332  1 22333456666765554444432 


Q ss_pred             -hcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462          166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                       ..+..++ ++..+.+.....+.+|.+++|.+...+.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~  345 (381)
T PRK03633        309 WACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM  345 (381)
T ss_pred             HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3333333 3344555556678888888887655443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.06  E-value=7.9e-05  Score=66.14  Aligned_cols=78  Identities=21%  Similarity=0.284  Sum_probs=68.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR  164 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~  164 (223)
                      +++..+++.+....+...++..++.|.++||+|||+.-++.+++..++++ +-..++++.++++|++.|++-.....+.
T Consensus        65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~F  142 (354)
T PF05631_consen   65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAF  142 (354)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999998888888877764 4555789999999999999888777653

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.06  E-value=4.5e-05  Score=68.10  Aligned_cols=114  Identities=11%  Similarity=0.120  Sum_probs=77.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----h------hHHHHHHHHHH-Hh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----L------NIYMLIFGRVL-LG  154 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----~------~~~~l~v~r~l-~G  154 (223)
                      ++..+.++......++..++.++.+++.||+|||+.+.++.++..++.++.++.     +      +...+....++ .+
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (481)
T TIGR00879       316 VSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAF  395 (481)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHH
Confidence            567777888888999999999999999999999999998887777766655521     1      22222222222 22


Q ss_pred             hhhhhhhhhh--hhcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462          155 VGIGFTNQCR--YISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       155 ~g~g~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      ++.+. .+..  ..++.+++ +|+++++.......+|.+++|.+...+.+
T Consensus       396 ~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~  444 (481)
T TIGR00879       396 FAMGW-GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE  444 (481)
T ss_pred             HHccc-cCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222 1211  13566655 48889999988888888888877665544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.03  E-value=5.8e-05  Score=70.74  Aligned_cols=97  Identities=10%  Similarity=0.189  Sum_probs=82.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYI  166 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~~  166 (223)
                      .++...|++.++..+|.+++.++.+++.+|+++++.+..+.++..++.+..+++++.+..++..++.|++.......   
T Consensus       251 ~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~---  327 (524)
T PF05977_consen  251 GGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSS---  327 (524)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---
Confidence            48899999999999999999999999999999999988899988888888999999888888888999888877766   


Q ss_pred             cccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccc
Q 027462          167 SQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGE  211 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~  211 (223)
                                               ......+..|++.||++.++
T Consensus       328 -------------------------~~t~~Q~~~P~~~~GRv~si  347 (524)
T PF05977_consen  328 -------------------------LNTLVQLSVPDWVRGRVFSI  347 (524)
T ss_pred             -------------------------HHHHHHHhCCHHHHhHHHHH
Confidence                                     45556666666666666654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.01  E-value=9.1e-05  Score=67.49  Aligned_cols=115  Identities=10%  Similarity=0.065  Sum_probs=84.6

Q ss_pred             CchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHH
Q 027462           28 KMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIAS  107 (223)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~  107 (223)
                      |.-.++|...++.++.++..++...-+++++   .+.+.|.                 + +.....|+.-++.+.+..-.
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~---n~~~~~Y-----------------g-s~~~~~wlsmIym~v~vp~g   96 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPIN---NYVNSFY-----------------G-SSSAADWLSMIYMVVSVPFG   96 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHH---HHHHHHh-----------------c-chHHHHHHHHHHHHHHHHHh
Confidence            4555667677777777777777776665443   3333332                 2 56777889999999999999


Q ss_pred             HhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh------hHH--HHHHHHHHHhhhhhhhhhh
Q 027462          108 LFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL------NIY--MLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus       108 ~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~------~~~--~l~v~r~l~G~g~g~~~~~  163 (223)
                      +.+-|+.|++|-|...+++..+.++++.+-..+.      .++  ..+.+..+.+...-..+..
T Consensus        97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~l  160 (480)
T KOG2563|consen   97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGL  160 (480)
T ss_pred             hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhcc
Confidence            9999999999999999999999999998866652      222  5566777777666555554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.01  E-value=3e-05  Score=67.29  Aligned_cols=114  Identities=13%  Similarity=-0.027  Sum_probs=66.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhch-hHH-HHHHHHH-HHHHHHHHhh--hhhHHHHHHHHHHHhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGR-KAS-ILVGGTA-FLAGSAIGGA--ALNIYMLIFGRVLLGVGIGFT  160 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Gr-k~~-~~~~~l~-~~~~~l~~~~--a~~~~~l~v~r~l~G~g~g~~  160 (223)
                      ++++.+.+++.+...++..++.++.+++.||..+ |+. +...... ..++......  ..+....++..++.|+.....
T Consensus       248 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  327 (379)
T TIGR00881       248 GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGP  327 (379)
T ss_pred             CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Confidence            3688899999999999999999999999998643 332 2221111 1122222222  234444445555666544333


Q ss_pred             hhhh--hhcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462          161 NQCR--YISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       161 ~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      ....  ..++..++ +|+++.+..+....+|..++|.+..-+
T Consensus       328 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  369 (379)
T TIGR00881       328 QMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYL  369 (379)
T ss_pred             hHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence            3321  13444433 377777777777777777776654433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.98  E-value=0.0002  Score=63.97  Aligned_cols=115  Identities=15%  Similarity=0.081  Sum_probs=84.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----LNIYMLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----~~~~~l~v~r~l~G~g~g~~~  161 (223)
                      +++.+.++......++..++.++.+++.||+++|+.+.++.++..++.++..+.     .+..++++..++.|+|.+...
T Consensus       248 ~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~  327 (406)
T PRK15402        248 LSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLAN  327 (406)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHh
Confidence            578888888888888899999999999999999999988888777766655543     345667777888888888765


Q ss_pred             hhhh--hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462          162 QCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       162 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      +...  .-...++++++..+.++....++..+++.+..-..+
T Consensus       328 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        328 AGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             hhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5432  111223457788888877777777677766655544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.97  E-value=9.1e-06  Score=72.96  Aligned_cols=110  Identities=11%  Similarity=0.077  Sum_probs=76.6

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHhHHhHHhh----hchhH-HHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHH
Q 027462           85 CKFDSQLLAAFTSSLYISGLIASLFASTVTRA----FGRKA-SILVGGTAFLAGSAIGGAALN------IYMLIFGRVLL  153 (223)
Q Consensus        85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr----~Grk~-~~~~~~l~~~~~~l~~~~a~~------~~~l~v~r~l~  153 (223)
                      +++++.+.+++.+...+...+..|+.|++.||    +|||+ .++.+.+...++.+++...++      ..++++.+++.
T Consensus        30 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (437)
T TIGR00792        30 LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILL  109 (437)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            35799999999999999999999999999998    67744 566777777777666655432      45566677777


Q ss_pred             hhhhhhhhhhhh--hccccc--ccccccccchhhhcccCccchhh
Q 027462          154 GVGIGFTNQCRY--ISQKWH--HQNTEEHSPLASKYVLPLVSYPL  194 (223)
Q Consensus       154 G~g~g~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  194 (223)
                      +++.+.......  .++..+  ++|+++.+.-.....+|.++.+.
T Consensus       110 ~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~  154 (437)
T TIGR00792       110 GLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAV  154 (437)
T ss_pred             HHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777765433221  334443  34777777766666666655443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.96  E-value=5.1e-05  Score=66.20  Aligned_cols=53  Identities=13%  Similarity=0.142  Sum_probs=43.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG  138 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~  138 (223)
                      ++++.+.+++.+...+...++.++.|++.||+|||+.+..+.....++..+..
T Consensus       257 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~  309 (366)
T TIGR00886       257 GLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVV  309 (366)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHH
Confidence            36788899889999999999999999999999998887777766666554444

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.95  E-value=8.8e-05  Score=66.57  Aligned_cols=114  Identities=20%  Similarity=0.230  Sum_probs=83.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-LNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      ++...+++.+...++.+++.++.+++.||+|+|+.+.++.++..++.+...+. ++...+++..++.|++.+...+... 
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566777888889999999999999999999999999988887776665554 3555666677778888776655432 


Q ss_pred             -hccc-----c--cc-cccccccchhhhcccCccchhhhhhhccC
Q 027462          166 -ISQK-----W--HH-QNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 -~~~~-----~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                       .++.     +  .+ +++.+++..+....+|..+++.+..-+..
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2221     1  12 36777888888888888888887777665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.95  E-value=6.5e-05  Score=75.98  Aligned_cols=114  Identities=10%  Similarity=-0.002  Sum_probs=76.0

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh--------------------hhHHH
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA--------------------LNIYM  145 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a--------------------~~~~~  145 (223)
                      +.++...+++.+...++.+++.++.|++.++.++++.+..+.++..++.+..++.                    .+.+.
T Consensus       257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (1140)
T PRK06814        257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR  336 (1140)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence            3588999999999999999999999999988877666555555555444333332                    45566


Q ss_pred             HHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462          146 LIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       146 l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      +++..++.|++.+...+...  +.....+ .++++++..+....+|..+++.+..-+
T Consensus       337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l  393 (1140)
T PRK06814        337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL  393 (1140)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            67778888888887766532  2233333 266666666666555555555544433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.93  E-value=7e-05  Score=67.69  Aligned_cols=75  Identities=16%  Similarity=0.260  Sum_probs=66.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhhhhhhhh
Q 027462           89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL--NIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~--~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      +...+.+.....++..++.++.+++.||+|+|+.+..+.++..++.+...+.+  +.+.+++..++.|++.+.....
T Consensus       259 ~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~  335 (428)
T PF13347_consen  259 EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVI  335 (428)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccc
Confidence            45677788888999999999999999999999999999999999888877775  8888889999999999988766

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.93  E-value=6.4e-05  Score=67.78  Aligned_cols=114  Identities=13%  Similarity=0.105  Sum_probs=90.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh-------hHH----HHHHHHHHHh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL-------NIY----MLIFGRVLLG  154 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~-------~~~----~l~v~r~l~G  154 (223)
                      .+++.+.+.+.....+...+..+++|+++||+|.++++......++++..+..+..       +..    .++...+..|
T Consensus       250 g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G  329 (417)
T COG2223         250 GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAG  329 (417)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhc
Confidence            57888889999999999999999999999999999999999988888877666553       222    2334455667


Q ss_pred             hhhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462          155 VGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       155 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      +|.|..+..  ++.++++.-...-+++++.-++|....|....+...
T Consensus       330 ~GnGsvfk~--Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~  374 (417)
T COG2223         330 LGNGSVFKM--IPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLD  374 (417)
T ss_pred             cCcchheee--chHHHHhhhhHHHHHHHHhccccccchhHHHHHHHH
Confidence            777665554  888888888888899999999999888877666544

>TIGR00898 2A0119 cation transport protein

Probab=97.90  E-value=9.6e-05  Score=67.92  Aligned_cols=102  Identities=12%  Similarity=-0.030  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhhhhhhhhhhhh--hccccc
Q 027462           96 TSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNI--YMLIFGRVLLGVGIGFTNQCRY--ISQKWH  171 (223)
Q Consensus        96 ~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~--~~l~v~r~l~G~g~g~~~~~~~--~~~~~~  171 (223)
                      .....+...++.++.+++.||+|||+.+.++.++..++.++..+.++.  ...++..++.+++.+...+..+  ..+.++
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            334456777888999999999999999999988888777766665432  3334444555555555545432  556665


Q ss_pred             cc-ccccccchhhhcccCccchhhhhh
Q 027462          172 HQ-NTEEHSPLASKYVLPLVSYPLIFS  197 (223)
Q Consensus       172 ~~-~~~~~~~~~~~~~~~~~~~~~~~~  197 (223)
                      .+ |+.+.+..+....+|.+++|.+..
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence            54 788888888887888888877655

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.90  E-value=5.9e-05  Score=69.43  Aligned_cols=115  Identities=13%  Similarity=0.157  Sum_probs=93.4

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhhhhhh
Q 027462           85 CKFDSQLLAAFTSSLYISGLIASLFASTVTRAF-GRKASILVGGTAFLAGSAIGGAAL--NIYMLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l~~~~~~l~~~~a~--~~~~l~v~r~l~G~g~g~~~  161 (223)
                      .++++++..-+.+++..-.-..+.++|+++||+ |+|+.+.++.++..+|.++.+.+.  +...++++-++.++|.|..=
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K  135 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK  135 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence            567888888888888877777889999999995 999999999999999999999884  77888888888889999877


Q ss_pred             hhhh--hcccc---cccccccccchhhhcccCccchhhhhhhc
Q 027462          162 QCRY--ISQKW---HHQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       162 ~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      +...  ..+.+   +.||...|+.+-.+=.+|+++.|.+..-+
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~  178 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLL  178 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHH
Confidence            6543  56666   23588888888777778888888754433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.87  E-value=0.00013  Score=67.42  Aligned_cols=103  Identities=13%  Similarity=-0.074  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHhhhhhhhhhh--hhhcccc
Q 027462           97 SSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALN----IYMLIFGRVLLGVGIGFTNQC--RYISQKW  170 (223)
Q Consensus        97 s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~----~~~l~v~r~l~G~g~g~~~~~--~~~~~~~  170 (223)
                      ....++..++.++.+++.||+|||+.++++..+..++.++.++..+    ...++..-+...+......+.  .+.++.+
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            3444566778899999999999999998888777766555544321    111111111111111111122  1134445


Q ss_pred             ccc-ccccccchhhhcccCccchhhhhhhc
Q 027462          171 HHQ-NTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       171 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      ..+ |+++.+.......++.+++|.+..-+
T Consensus       422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l  451 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGAIIGQFGFLYL  451 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence            444 66666666666666666555544433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.86  E-value=0.00041  Score=62.30  Aligned_cols=114  Identities=9%  Similarity=-0.132  Sum_probs=79.6

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHH-hhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVT-RAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~-dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      ++.+.+++.+...++........+++. ||++.++.+..+..+..++.++.+.++++..+++..++.+++.+...+... 
T Consensus       241 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~  320 (400)
T PRK11646        241 SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARET  320 (400)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHH
Confidence            567778887777776665555555555 457767777778777777777777777777777777778887776655432 


Q ss_pred             -hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462          166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                       ..+..++ +|+++++..+..+.+|..++|.+...+..
T Consensus       321 ~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        321 LSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             HHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence             4444443 48888888888888888878776666554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.85  E-value=8.7e-05  Score=65.88  Aligned_cols=112  Identities=13%  Similarity=0.054  Sum_probs=69.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      ++++.+.+.+.+...++..++.++.+++.||+|||+.+.++.++..++.+...+.++....+..-.+.+.|.+...+...
T Consensus       235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  314 (392)
T PRK10473        235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVAM  314 (392)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            35788889999999999999999999999999999999999888888777766665444333333343333333332222


Q ss_pred             hcccc--cccccccccchhhhcccCccchhhhhh
Q 027462          166 ISQKW--HHQNTEEHSPLASKYVLPLVSYPLIFS  197 (223)
Q Consensus       166 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (223)
                      .....  ++|.+.+.+..+....+|..+++.+..
T Consensus       315 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        315 SQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAA  348 (392)
T ss_pred             HHHhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111  223444444444444455554444433

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.84  E-value=0.00012  Score=51.97  Aligned_cols=78  Identities=13%  Similarity=0.073  Sum_probs=64.5

Q ss_pred             hhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHH
Q 027462           48 GFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGG  127 (223)
Q Consensus        48 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~  127 (223)
                      |+....+.++  +|..+++..                  +|.++.+|+.+.+.+|+++|.+...++.++..+++.+..+.
T Consensus         5 GigRFayTpl--LP~M~~~~~------------------ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l   64 (85)
T PF06779_consen    5 GIGRFAYTPL--LPLMQADGG------------------LSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGL   64 (85)
T ss_pred             hhHHHHHHhH--hHHHHHhcC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            4444445444  488887774                  79999999999999999999999999999988888899999


Q ss_pred             HHHHHHHHHHhhhhhHHH
Q 027462          128 TAFLAGSAIGGAALNIYM  145 (223)
Q Consensus       128 l~~~~~~l~~~~a~~~~~  145 (223)
                      +...+..+.+++.++...
T Consensus        65 ~~~~~~~~~ma~~~~~~~   82 (85)
T PF06779_consen   65 LLTVLSTAAMALTHSFWL   82 (85)
T ss_pred             HHHHHHHHHHHHHhchHH
Confidence            988888888888876543

Note that many members are hypothetical proteins.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.83  E-value=0.00033  Score=62.73  Aligned_cols=77  Identities=10%  Similarity=-0.102  Sum_probs=59.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      +.++.+.+++.+...++..+++++.+++.||.++|+.+..+.+ ..+..+..++.+++..+.+..++.|++.+...+.
T Consensus       237 g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~  313 (393)
T PRK11195        237 GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVP  313 (393)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence            4688999999999999999999999999999999888777753 3333444455566666666777888888776654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.83  E-value=7.2e-05  Score=67.48  Aligned_cols=115  Identities=8%  Similarity=0.041  Sum_probs=69.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKAS-ILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~-~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      .++.+.+.+.....++..++.++.|++.||++||+. ..+..++..++.++.....+.......-.+.++|.....+..+
T Consensus       276 ~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  355 (412)
T TIGR02332       276 SSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFW  355 (412)
T ss_pred             CcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHH
Confidence            467888889999999999999999999999997764 3333333333322221122212111111222233222222211


Q ss_pred             --hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462          166 --ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                        ..+.+.. +|+++++.......+|.+++|.+..-+.+
T Consensus       356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~  394 (412)
T TIGR02332       356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKD  394 (412)
T ss_pred             hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence              2233433 48899999999999999999886655544

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.82  E-value=0.00046  Score=61.51  Aligned_cols=108  Identities=16%  Similarity=0.158  Sum_probs=89.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      +.+.+..+.+++...+...+.+++..++..|+|.++.+..+.++..++.++=... +.+.++.+.++.|.|.+......+
T Consensus        43 gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLP  121 (395)
T COG2807          43 GLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLP  121 (395)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhh
Confidence            4799999999999999999999999999999999999999999999998887777 778899999999999988888754


Q ss_pred             --hcccccccccccccchhhhcccCccchhh
Q 027462          166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPL  194 (223)
Q Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (223)
                        +-.++.+|-....+.|+..-.+++-+++.
T Consensus       122 slIK~~Fpk~~~~mtglYs~sl~~~aaLaa~  152 (395)
T COG2807         122 SLIKRDFPKRVGLMTGLYSTSLGAGAALAAA  152 (395)
T ss_pred             HHHHhhcccchhhHHhHHHHHHHHHHHHHhh
Confidence              66677777666666666655555444443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.81  E-value=0.00018  Score=66.34  Aligned_cols=111  Identities=12%  Similarity=0.002  Sum_probs=68.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhH-------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKA-------SILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIG  158 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~-------~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g  158 (223)
                      +++..+.+.+.+...++..++.++.|+++||+|||+       ...+..++..+..++.....+....++..++.+++.+
T Consensus       284 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~  363 (476)
T PLN00028        284 GLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQ  363 (476)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            368889999999999999999999999999998752       2222222222223333444454444444455555443


Q ss_pred             hhhhhhh--hcccccccccccccchhhhcccCccchhhhh
Q 027462          159 FTNQCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIF  196 (223)
Q Consensus       159 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (223)
                      ......+  .+...++.++...++......+|.++.|.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~  403 (476)
T PLN00028        364 AACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLF  403 (476)
T ss_pred             HhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHH
Confidence            3333221  2333334478888888777667777776543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.81  E-value=0.00025  Score=64.60  Aligned_cols=113  Identities=12%  Similarity=-0.108  Sum_probs=60.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh--chhHHHH-HHHHHHHHHHHHHhh--hhhHHHHHHHHHHHhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF--GRKASIL-VGGTAFLAGSAIGGA--ALNIYMLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~--Grk~~~~-~~~l~~~~~~l~~~~--a~~~~~l~v~r~l~G~g~g~~~  161 (223)
                      ++..+.+++.....++..++.++.|++.||+  +||.... ....+..++.++..+  ..+....++..++.|.+.....
T Consensus       286 ~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  365 (452)
T PRK11273        286 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPV  365 (452)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHH
Confidence            5778888888888899999999999999999  5554322 222222232222222  2233334444444444332222


Q ss_pred             hhh--hhcccccc-cccccccchhhhcccCc-cchhhhhhhc
Q 027462          162 QCR--YISQKWHH-QNTEEHSPLASKYVLPL-VSYPLIFSIT  199 (223)
Q Consensus       162 ~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~  199 (223)
                      ...  ...+..++ +|+++.+..+....+|. +++|.+....
T Consensus       366 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l  407 (452)
T PRK11273        366 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  407 (452)
T ss_pred             HHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            111  12333433 36777777665544443 3345544443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.81  E-value=8.8e-05  Score=67.10  Aligned_cols=116  Identities=12%  Similarity=0.106  Sum_probs=83.9

Q ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462           84 YCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        84 ~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      +++++.++...+.-...+.+++++++.|++.||+|.|+++.++.++..+..+..-+...-..+.+.-.+.|...|.....
T Consensus       282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~  361 (438)
T COG2270         282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQAS  361 (438)
T ss_pred             HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHH
Confidence            34689999999999999999999999999999999999999999888877665555544455556667778878777665


Q ss_pred             h--hhcccc-cccccccccchhhhcccCccchhhhhhhc
Q 027462          164 R--YISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       164 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      .  +..+.- ++|+++.|++++..-=.+...+|..++-.
T Consensus       362 SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~  400 (438)
T COG2270         362 SRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVI  400 (438)
T ss_pred             HHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHH
Confidence            1  122222 33566777766665555555566554443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.76  E-value=0.00046  Score=62.74  Aligned_cols=112  Identities=12%  Similarity=0.120  Sum_probs=85.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh--h
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR--Y  165 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~--~  165 (223)
                      ++...|.+.+...+.-++...+..++.+|+|.|+.++++..++++-.+.++++++.+.+.+.+.+.|+-.+......  |
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY  336 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY  336 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56678999999999999999999999999999999999999999999999999999999999999998777766653  4


Q ss_pred             hccccccc-ccccccch-hhhcccCccchhhhhhhc
Q 027462          166 ISQKWHHQ-NTEEHSPL-ASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       166 ~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~  199 (223)
                      +..++++| ..+.+.+. +...++|..+.+.....+
T Consensus       337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~l  372 (412)
T PF01306_consen  337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYL  372 (412)
T ss_dssp             HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence            77777777 44555553 344445555555444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.76  E-value=0.00025  Score=65.78  Aligned_cols=114  Identities=18%  Similarity=0.162  Sum_probs=80.6

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh--HHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHh
Q 027462           85 CKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK--ASILVGGTAFLAGSAIGGA--------ALNIYMLIFGRVLLG  154 (223)
Q Consensus        85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk--~~~~~~~l~~~~~~l~~~~--------a~~~~~l~v~r~l~G  154 (223)
                      ++++.++...+.-...+.+++|+++.|++.||+|.|  ++++++..+..+..+...+        .++-+.+.+.-++.|
T Consensus       312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G  391 (477)
T PF11700_consen  312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG  391 (477)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence            358999999999999999999999999999999999  8888777777544443333        345566777788899


Q ss_pred             hhhhhhhhhh-h-hcccc-cccccccccchhhhcccCccchhhhhhh
Q 027462          155 VGIGFTNQCR-Y-ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSI  198 (223)
Q Consensus       155 ~g~g~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (223)
                      +..|...+.. . .++.- ++|+++.|+++...-=..+.++|++.+-
T Consensus       392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~  438 (477)
T PF11700_consen  392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGL  438 (477)
T ss_pred             HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887761 1 22222 3456666666665555555555554433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.74  E-value=0.0001  Score=66.06  Aligned_cols=94  Identities=13%  Similarity=0.110  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHhhhhhhhhhhh--hhcccccc
Q 027462           99 LYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNI----YMLIFGRVLLGVGIGFTNQCR--YISQKWHH  172 (223)
Q Consensus        99 ~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~----~~l~v~r~l~G~g~g~~~~~~--~~~~~~~~  172 (223)
                      ..+.-+-|.++.+++.||+|||+.+..+.++++++.++...+.+-    .+++++|++...    .+.+.  |.+.-++.
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg----~fqvaYvYtPEVyPT  465 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISG----AFQVAYVYTPEVYPT  465 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhc----hheEEEEecCcccch
Confidence            345566788899999999999999999999999988877776432    344566665532    33442  25555555


Q ss_pred             c-ccccccchhhhcccCccchhhhh
Q 027462          173 Q-NTEEHSPLASKYVLPLVSYPLIF  196 (223)
Q Consensus       173 ~-~~~~~~~~~~~~~~~~~~~~~~~  196 (223)
                      . |....+.-++-.=+|+++.|.+.
T Consensus       466 avRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  466 AVRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             hhhhcchhhhhhHHhhhhhhhhHHH
Confidence            4 66666655555556666666544

>PRK10133 L-fucose transporter; Provisional

Probab=97.73  E-value=0.00024  Score=64.81  Aligned_cols=113  Identities=7%  Similarity=0.008  Sum_probs=79.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      ++++.+.++....+.++..++.++.+++.||+|+|+++..+.++..+..++..+.++. ..++.-++.|+|.+...+...
T Consensus       291 g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~  369 (438)
T PRK10133        291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIF  369 (438)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999888877776665555554443 224456678899998888754


Q ss_pred             --hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462          166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                        .-+...++...+-++.... .+|..+.|.+...+.
T Consensus       370 s~a~~~~~~~~~~as~l~~~~-~~g~~~~~~i~G~l~  405 (438)
T PRK10133        370 SLGIKNLGQDTKYGSSFIVMT-IIGGGIVTPVMGFVS  405 (438)
T ss_pred             HHHHcccchhhccchhHHhHH-hccchHHHHHHHHHH
Confidence              2222333344555555433 345555665555443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.72  E-value=0.00014  Score=59.53  Aligned_cols=105  Identities=24%  Similarity=0.317  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHhhhhhhhhhhhh--
Q 027462           90 QLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALN--IYMLIFGRVLLGVGIGFTNQCRY--  165 (223)
Q Consensus        90 ~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~--~~~l~v~r~l~G~g~g~~~~~~~--  165 (223)
                      ...++..+...++..++.++.|.+.||+|||+.+..+......+.++.++..+  ...+++.|++.|++.+...+...  
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            47889999999999999999999999999998888887765555566666655  88889999999988886666532  


Q ss_pred             hcccccc--cccccccchhh-hcccCccchhh
Q 027462          166 ISQKWHH--QNTEEHSPLAS-KYVLPLVSYPL  194 (223)
Q Consensus       166 ~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~  194 (223)
                      .++..++  +|....+.... ...+|.+++|.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (338)
T COG0477         119 LSEWFPEATERGLAVGLVTLGAGALGLALGPL  150 (338)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444442  46666666666 35566666653

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.72  E-value=0.00015  Score=64.47  Aligned_cols=116  Identities=5%  Similarity=-0.112  Sum_probs=75.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA-ALNIYMLIFGRVLLGVGIGFTNQCR  164 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~-a~~~~~l~v~r~l~G~g~g~~~~~~  164 (223)
                      ++++.+.+++.+...++..++.++.+++.||+|+|+.+..+..+..++.++... .++.+..++..++.+++.....+..
T Consensus       231 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  310 (382)
T PRK10091        231 GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPL  310 (382)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH
Confidence            368889999999999999999999999999999999988888877777655443 3444445555556665544333221


Q ss_pred             h--hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462          165 Y--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       165 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      .  ..+...++|....+.....+.+|..++|.+..-+..
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~  349 (382)
T PRK10091        311 QILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLT  349 (382)
T ss_pred             HHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            1  112222222222223355667888888876655443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.67  E-value=0.00068  Score=61.48  Aligned_cols=102  Identities=17%  Similarity=0.086  Sum_probs=73.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh--chhHHHHHHHHHH-HHHHHHHhhhh--hHHHHHHHHHHHhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAF--GRKASILVGGTAF-LAGSAIGGAAL--NIYMLIFGRVLLGVGIGFT  160 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~--Grk~~~~~~~l~~-~~~~l~~~~a~--~~~~l~v~r~l~G~g~g~~  160 (223)
                      +++....++..+.+=.+.+.|++++|+++||+  |||.+..+.+.+. .++.+..-+++  ++.+..+.-++.|+-.-+.
T Consensus       284 ~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGP  363 (448)
T COG2271         284 GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGP  363 (448)
T ss_pred             CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhH
Confidence            68999999999999999999999999999996  6775544433333 33333334444  4466667777788776665


Q ss_pred             hhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhh
Q 027462          161 NQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQ  215 (223)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~  215 (223)
                      .-.                            ..+...|..|++--|.++|+.++.
T Consensus       364 qmL----------------------------iGl~a~e~~pK~AaGtA~Gf~Glf  390 (448)
T COG2271         364 QML----------------------------IGLAAAEFVPKKAAGTATGFVGLF  390 (448)
T ss_pred             HHH----------------------------HHHHHhccccHhhccchhchhhhH
Confidence            554                            566778888888888888776544

>PRK10054 putative transporter; Provisional

Probab=97.64  E-value=0.00018  Score=64.56  Aligned_cols=113  Identities=12%  Similarity=0.006  Sum_probs=75.7

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-LNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      +....+++.+...+......+..|++.||+++|+.+..+..+..++.+...++ ++.+.+.+...+.|+|.+...+... 
T Consensus       242 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~  321 (395)
T PRK10054        242 AEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYM  321 (395)
T ss_pred             HHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            56667777777777777778889999999999999988888887777666654 5666666777888888776555532 


Q ss_pred             -hccccc-ccccccccchhhhcccCccchhhhhhhccC
Q 027462          166 -ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                       ..+.-+ ++++++++..+. ..+|..++|.+...+.+
T Consensus       322 ~~~~~~p~~~~~~~~~~~~~-~~~G~~~Gp~~~G~l~~  358 (395)
T PRK10054        322 LIDHIAPPGMKASYFSAQSL-GWLGAAINPLVSGVILT  358 (395)
T ss_pred             HHHHhCCcccceehHhHHHH-HHHHHHHHHHHHHHHHH
Confidence             222222 235666664442 22556666665544433

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.63  E-value=0.0012  Score=61.19  Aligned_cols=114  Identities=10%  Similarity=0.065  Sum_probs=71.5

Q ss_pred             CCChhHHHHHHH-HHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH---hhh-hhHHHHHHHHHH----Hhhh
Q 027462           86 KFDSQLLAAFTS-SLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG---GAA-LNIYMLIFGRVL----LGVG  156 (223)
Q Consensus        86 ~~s~~~~~~~~s-~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~---~~a-~~~~~l~v~r~l----~G~g  156 (223)
                      +++.++.+++.. ...++.+++.++.|++.||+|+|+.+.++.++..+..+..   +.. ++...+.+.-++    .|++
T Consensus       254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~  333 (491)
T PRK11010        254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG  333 (491)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            478999999874 5568999999999999999999888776666555443322   222 333333333344    3333


Q ss_pred             hhhhhhhhhhcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462          157 IGFTNQCRYISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       157 ~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      .+.....  .....++ .+.+.++.+++...+|.++.+.+...+..
T Consensus       334 ~~~~~a~--~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~  377 (491)
T PRK11010        334 TAAFVAL--LMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE  377 (491)
T ss_pred             HHHHHHH--HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332221  2333333 36778888888888887766655544443

>TIGR00788 fbt folate/biopterin transporter

Probab=97.62  E-value=0.00092  Score=61.64  Aligned_cols=77  Identities=6%  Similarity=-0.001  Sum_probs=54.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc-----hhHHHHHHHHHHH-HHHHHHhhhhhHHHH-HHHHHHHhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFG-----RKASILVGGTAFL-AGSAIGGAALNIYML-IFGRVLLGVGIG  158 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G-----rk~~~~~~~l~~~-~~~l~~~~a~~~~~l-~v~r~l~G~g~g  158 (223)
                      +++.++++.+.+...+...+-.+ +|++.||++     ||+.++++.++.. +.....+..++.... .+..++.+++.+
T Consensus        57 g~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a  135 (468)
T TIGR00788        57 GLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKA  135 (468)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence            47999999999999999998666 999999998     7777777776653 333333333443333 346778888777


Q ss_pred             hhhhh
Q 027462          159 FTNQC  163 (223)
Q Consensus       159 ~~~~~  163 (223)
                      ....+
T Consensus       136 ~~dv~  140 (468)
T TIGR00788       136 LYDVL  140 (468)
T ss_pred             HHHHh
Confidence            76654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=97.61  E-value=0.00049  Score=62.49  Aligned_cols=114  Identities=9%  Similarity=0.028  Sum_probs=77.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA--LNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a--~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      +....++......++.+++.++.+++.||+|+|+.+.++.++..++.+...+.  .+.+.+++..++.|+|.+...+...
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~  341 (448)
T PRK09848        262 TGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMW  341 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444567788899999999999999999999998888777666554  3555666667788888877766532


Q ss_pred             --hc-----cccc---ccccccccchhhhcccCccchhhhhhhccC
Q 027462          166 --IS-----QKWH---HQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 --~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                        ..     +.++   ++++..++..+...-+|..+++.+..-++.
T Consensus       342 al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        342 ALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             HHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11     1221   125666777777777777777776665543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.60  E-value=0.0017  Score=56.92  Aligned_cols=110  Identities=11%  Similarity=0.078  Sum_probs=68.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh---h-hhHHHHHHHHHHHhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA---A-LNIYMLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~---a-~~~~~l~v~r~l~G~g~g~~~  161 (223)
                      ++++++.+++.+...++..++.++.+++.||+|||+.+.++.++..+..+....   . .+...+.+.-.+.+.+.+...
T Consensus       226 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T PRK11102        226 GVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMIS  305 (377)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence            368899999999999999999999999999999999988888765443322221   1 223333333333333333222


Q ss_pred             hhh--hhcccccccccccccchhhh-cccCccchhhh
Q 027462          162 QCR--YISQKWHHQNTEEHSPLASK-YVLPLVSYPLI  195 (223)
Q Consensus       162 ~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  195 (223)
                      ...  ...+..++.++++.+..... +++|..+++..
T Consensus       306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        306 SNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            211  14444455566677665543 45666666654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.59  E-value=0.0013  Score=58.37  Aligned_cols=115  Identities=12%  Similarity=-0.022  Sum_probs=76.2

Q ss_pred             CChhHHHHHHHHHH-HHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHhhhhhh
Q 027462           87 FDSQLLAAFTSSLY-ISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA------ALNIYMLIFGRVLLGVGIGF  159 (223)
Q Consensus        87 ~s~~~~~~~~s~~~-lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~------a~~~~~l~v~r~l~G~g~g~  159 (223)
                      +++++.+++..... ....++.++.|++.||+|+|+.+..+.++..+..+....      .++...++....+.+++.|.
T Consensus       240 ~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  319 (390)
T TIGR02718       240 WPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGI  319 (390)
T ss_pred             CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHH
Confidence            68999999888775 577788899999999999999988777665333222211      12223333444455555555


Q ss_pred             hhhhhh--hcccc-c-ccccccccchhhhcccCccchhhhhhhccC
Q 027462          160 TNQCRY--ISQKW-H-HQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       160 ~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      ..+...  ..+.. + +.+.+.++..++...+|..++|.+...+.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~  365 (390)
T TIGR02718       320 TSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD  365 (390)
T ss_pred             HHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544332  22333 2 347889999999999999999887665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.59  E-value=0.00077  Score=60.18  Aligned_cols=90  Identities=13%  Similarity=-0.010  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHhhhchh---HHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhc
Q 027462           92 LAAFTSSLYISGLIASLFASTVTRAFGRK---ASILV-GGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYIS  167 (223)
Q Consensus        92 ~~~~~s~~~lg~~~~~~~~g~l~dr~Grk---~~~~~-~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~~~  167 (223)
                      .+...+...+...   +..+++.||.+||   +.... ..++..+..++.++..+....++.-.+.|++.....+.    
T Consensus       228 ~~~~~~l~~~~g~---~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----  300 (368)
T TIGR00903       228 AGDAVALAILAGL---IGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAI----  300 (368)
T ss_pred             HHHHHHHHHHHHH---HHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHH----
Confidence            4444444444333   4457777777653   33222 33333333333333333333344445556656555555    


Q ss_pred             ccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccch
Q 027462          168 QKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGES  212 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~  212 (223)
                                              ...+..|.+|++.||+++|+.
T Consensus       301 ------------------------~~~~~~~~~p~~~rgt~~G~~  321 (368)
T TIGR00903       301 ------------------------IMDWIGKFCDKELHGKAAGAI  321 (368)
T ss_pred             ------------------------HHHHHHHhcchhhcCcccchh
Confidence                                    445667777777777777654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.59  E-value=0.00078  Score=61.88  Aligned_cols=113  Identities=9%  Similarity=0.092  Sum_probs=72.6

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhhhhhhh
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA-----ALNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~-----a~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      +....+++.+...++.+++.++.+++.||+|+|+.+.++.++..++.+...+     ..+...+++.-++.|++.+....
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            3455667777777888999999999999999999998888776655544322     23455566666777777777665


Q ss_pred             hhh--hccc-----cc-cc--ccccccchhhhcccCccchhhhhhhcc
Q 027462          163 CRY--ISQK-----WH-HQ--NTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       163 ~~~--~~~~-----~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                      ...  .++.     |+ ++  ++..++..+...-+|..+++.+..-++
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            421  2221     31 12  344455555555566666666666554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.55  E-value=0.00066  Score=61.86  Aligned_cols=117  Identities=9%  Similarity=-0.056  Sum_probs=67.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHH--------HHHHHHHHHHHHH--Hhh-hhhHHHHHHHHHHHh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASI--------LVGGTAFLAGSAI--GGA-ALNIYMLIFGRVLLG  154 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~--------~~~~l~~~~~~l~--~~~-a~~~~~l~v~r~l~G  154 (223)
                      +++..+.+++.+...++..++.++.|++.||+++|+..        ..+......+...  ... ..+....++.-.+.+
T Consensus       293 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  372 (465)
T TIGR00894       293 RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLAN  372 (465)
T ss_pred             CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            36888999999999999999999999999998754211        1111111111111  111 122223333333444


Q ss_pred             hhhhhhhhhhh-hccc-ccccccccccchhhhcccCccchhhhhhhccCC
Q 027462          155 VGIGFTNQCRY-ISQK-WHHQNTEEHSPLASKYVLPLVSYPLIFSITAPK  202 (223)
Q Consensus       155 ~g~g~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  202 (223)
                      .+.+...+... ..+. .++.++.+.+..+....+|.++.|.+...+.+.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~  422 (465)
T TIGR00894       373 AVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQ  422 (465)
T ss_pred             HHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence            44333322211 2222 333478888888888888888888777665543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.54  E-value=0.00087  Score=61.91  Aligned_cols=102  Identities=17%  Similarity=0.077  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh------hhHHHHHHH----HHHHhhhhhhhhhhhh
Q 027462           96 TSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA------LNIYMLIFG----RVLLGVGIGFTNQCRY  165 (223)
Q Consensus        96 ~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a------~~~~~l~v~----r~l~G~g~g~~~~~~~  165 (223)
                      .....+...+..+++|+++||+|+|+++.++.+...+..+...+.      .++..+++.    -+..|+|.|..+..  
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~--  369 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQM--  369 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHh--
Confidence            444557788888999999999999999998888777665432221      133333332    34446666666544  


Q ss_pred             hcccccc----------------------cccccccchhhhcccCccchhhhhhhc
Q 027462          166 ISQKWHH----------------------QNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       166 ~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      +++.+++                      +-+-+.+++++.-++|..+.|......
T Consensus       370 ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~  425 (462)
T PRK15034        370 IAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMS  425 (462)
T ss_pred             hHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHH
Confidence            3444431                      122445666777778888788655444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.54  E-value=0.00054  Score=62.09  Aligned_cols=113  Identities=13%  Similarity=0.110  Sum_probs=81.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-hhHHHHHH----HHHHHhhhhhhhhh
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-LNIYMLIF----GRVLLGVGIGFTNQ  162 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-~~~~~l~v----~r~l~G~g~g~~~~  162 (223)
                      +....+.+.+...+.-++.-.+.+++..|+|.|+++.++.+...+-..+.+.. ++.+...+    ...+.|+..+....
T Consensus       241 ~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~  320 (400)
T PF03825_consen  241 SGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHA  320 (400)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHH
Confidence            45666766677777788888899999999999999999999999988888877 45444333    34568888777766


Q ss_pred             hh--hhccccccc-ccccccchhhh-cccCccchhhhhhhcc
Q 027462          163 CR--YISQKWHHQ-NTEEHSPLASK-YVLPLVSYPLIFSITA  200 (223)
Q Consensus       163 ~~--~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~  200 (223)
                      +.  +++...+++ |.++|+.+++. .++|..++..+..-+.
T Consensus       321 a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~  362 (400)
T PF03825_consen  321 ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLY  362 (400)
T ss_pred             HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            53  366666554 78888887765 4577776665544443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.54  E-value=0.00084  Score=60.64  Aligned_cols=77  Identities=12%  Similarity=0.088  Sum_probs=59.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL-NIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~-~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      +++.+.++++.-.+.++..+|..+.|++.|| +.|+.+....++..+..+...+.. +....++.-++.|+..+...+.
T Consensus       243 g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~  320 (394)
T COG2814         243 GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQG  320 (394)
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhH
Confidence            5799999999999999999999999999999 888888888777777766655554 4444455555666665554444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.52  E-value=0.00099  Score=60.41  Aligned_cols=35  Identities=9%  Similarity=-0.006  Sum_probs=30.7

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK  120 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk  120 (223)
                      ++++.+.++......++..++.++.|++.||++++
T Consensus       283 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       283 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            35788889999999999999999999999999654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11043 putative transporter; Provisional

Probab=97.52  E-value=0.0013  Score=58.53  Aligned_cols=115  Identities=7%  Similarity=-0.037  Sum_probs=76.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH---hh--hhhHHHHHHHHHHHhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG---GA--ALNIYMLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~---~~--a~~~~~l~v~r~l~G~g~g~~~  161 (223)
                      +++.+.++......++..++.++.+++.||+|+|+.+....++..++.+..   ..  .++...+++...+.|++.+...
T Consensus       235 ~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (401)
T PRK11043        235 YSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIY  314 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence            688888888888888899999999999999999887655555444433221   11  2344444455566777777766


Q ss_pred             hhhh--hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462          162 QCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       162 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      +...  ..+..++.++++.+.++.....+..+++.+...+..
T Consensus       315 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        315 PIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            6532  223344558888888887766666666666665544

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.52  E-value=0.0013  Score=59.65  Aligned_cols=114  Identities=11%  Similarity=-0.062  Sum_probs=62.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh--chh-HHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAF--GRK-ASILVGG---TAFLAGSAIGGAALNIYMLIFGRVLLGVGIGF  159 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~--Grk-~~~~~~~---l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~  159 (223)
                      +++..+.+...+...++..++.++.|++.||+  ++| .......   ++..+..+... ..+...+.+..+..|++...
T Consensus       275 g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~  353 (434)
T PRK11663        275 GVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFG  353 (434)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhh
Confidence            46888999999999999999999999999999  333 3222211   11111111111 12222333333333433221


Q ss_pred             hhhh--hhhcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462          160 TNQC--RYISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       160 ~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                      ....  ...++.+++ +|+++.++.+...-+|..++|....-+.
T Consensus       354 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~  397 (434)
T PRK11663        354 PQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL  397 (434)
T ss_pred             HHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence            1111  113344433 4777777777777677776666554443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.51  E-value=0.0011  Score=60.03  Aligned_cols=106  Identities=8%  Similarity=0.053  Sum_probs=72.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc-hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFG-RKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G-rk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      ++.+++|.+.+...+..++.+++.|.++||++ +|+.+.++.++..+..+.....++++.+++..++..+......+...
T Consensus        34 ~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~d  113 (400)
T PF03825_consen   34 FSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSD  113 (400)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHH
Confidence            79999999999999999999999999999986 46777777777666666666667777777766666665544444321


Q ss_pred             -hcccccccccccccchhhhcccCccch
Q 027462          166 -ISQKWHHQNTEEHSPLASKYVLPLVSY  192 (223)
Q Consensus       166 -~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (223)
                       +..+..+++..-++-.+.--++|.+++
T Consensus       114 si~~~~~~~~~~~YG~iRlwGSiGf~~~  141 (400)
T PF03825_consen  114 SIALSYLGDRGKDYGRIRLWGSIGFIVA  141 (400)
T ss_pred             HHHHHHcccccCCCCcchhhhhHHHHHH
Confidence             222333334444555444444555443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.46  E-value=0.0007  Score=58.94  Aligned_cols=114  Identities=14%  Similarity=0.080  Sum_probs=72.9

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFL-AGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR  164 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~-~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~  164 (223)
                      ++|+...+.+.+.....+++.+++.|.+.|++|++...+.+..+.. .+.....+..  ..=.+...+.|+..+.. ++.
T Consensus       296 GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~--lsPy~~m~~lGLsysll-Acs  372 (459)
T KOG4686|consen  296 GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF--LSPYTSMTFLGLSYSLL-ACS  372 (459)
T ss_pred             CCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh--ccHHHHHHHHhhhHHHH-HHH
Confidence            3799999999999999999999999999999999866655544443 3333333321  11123344555544332 211


Q ss_pred             h----hcccccccccccccchhhhcccCccchhhhhhhccCC
Q 027462          165 Y----ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPK  202 (223)
Q Consensus       165 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  202 (223)
                      .    .+.--.++-++++++..++--+|.-+.|.+..-+.+.
T Consensus       373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~  414 (459)
T KOG4686|consen  373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG  414 (459)
T ss_pred             HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence            0    1112234567788888888888888777777666653

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.44  E-value=0.0035  Score=56.19  Aligned_cols=114  Identities=11%  Similarity=0.006  Sum_probs=73.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFL-AGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~-~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      ++..+.+.+.+...++..++.++.+++.||.+ |+.++.+.++.. +..++....++...+.+..++.|++.+...+...
T Consensus       249 ~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  327 (394)
T PRK10213        249 FGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWS  327 (394)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            68888999999999999999999999999965 444444444433 3334444555666666777888888776655422


Q ss_pred             --hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462          166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                        ....-.+++.+..+.....+.+|..++|.+...+.+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~  365 (394)
T PRK10213        328 TWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALD  365 (394)
T ss_pred             HHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              222223333344455555666777777766665554

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.43  E-value=0.00068  Score=62.72  Aligned_cols=140  Identities=12%  Similarity=0.098  Sum_probs=87.8

Q ss_pred             ccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh--------HH-HHHHH
Q 027462           57 VTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK--------AS-ILVGG  127 (223)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk--------~~-~~~~~  127 (223)
                      ++.+|.|+++.+                 +++-.+.|++.+...+...+..+++|.++||+-+|        +. -.++.
T Consensus       278 ~~y~PtY~~~VL-----------------~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~  340 (466)
T KOG2532|consen  278 LTYLPTYLKEVL-----------------GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAF  340 (466)
T ss_pred             HHHhhHHHHHHh-----------------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHH
Confidence            566677777665                 68999999999999999999999999999998541        11 11222


Q ss_pred             HHHHHHHHHHhhhh---h---HHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462          128 TAFLAGSAIGGAAL---N---IYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       128 l~~~~~~l~~~~a~---~---~~~l~v~r~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      ....+..+..++.+   .   ...+.+.-.+.|+..++.+.+  .-++.++-....++..+....++.++.|.++.-+.+
T Consensus       341 ~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~--~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~  418 (466)
T KOG2532|consen  341 GGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKN--HQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT  418 (466)
T ss_pred             HHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhh--hhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence            22222223333332   2   112222233334433333332  222222236677777888888888899998888886


Q ss_pred             CCCCcccccchhhhhhhhhc
Q 027462          202 KRSRGAGAGESPWQWLLLLH  221 (223)
Q Consensus       202 ~~~rg~~~~~~~~~~~~~l~  221 (223)
                       +.     ...+||+.|.++
T Consensus       419 -~~-----t~~eW~~VF~i~  432 (466)
T KOG2532|consen  419 -DN-----TREEWRIVFLIA  432 (466)
T ss_pred             -CC-----CHHHHHHHHHHH
Confidence             32     457999999876

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.36  E-value=0.0028  Score=58.91  Aligned_cols=99  Identities=22%  Similarity=0.325  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhH-----------HHH---HHHHHHHhhhhh
Q 027462           93 AAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNI-----------YML---IFGRVLLGVGIG  158 (223)
Q Consensus        93 ~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~-----------~~l---~v~r~l~G~g~g  158 (223)
                      .+......+...++..+...+.||+|||+.++.+...+.++.++.+.....           .++   .+.-++..+..|
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g  411 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG  411 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence            444555556667777777999999999999999999999988877754221           111   111112222222


Q ss_pred             hhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccch---hhhhhhhh
Q 027462          159 FTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGES---PWQWLLLL  220 (223)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~---~~~~~~~l  220 (223)
                      . .+.                            ...+.+|.+|.+.|+.+.++.   +|-+.+.+
T Consensus       412 ~-g~v----------------------------~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v  447 (513)
T KOG0254|consen  412 W-GPV----------------------------PWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI  447 (513)
T ss_pred             c-ccc----------------------------hhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH
Confidence            1 122                            346889999999999998863   66665544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.29  E-value=0.0023  Score=57.91  Aligned_cols=112  Identities=10%  Similarity=-0.035  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-hc
Q 027462           89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-IS  167 (223)
Q Consensus        89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-~~  167 (223)
                      ....+...+....+..++.++.+++.||+++|+.+.++.++..+..++..+.++... .+.-++.|+..+..++..+ ..
T Consensus       268 ~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~  346 (410)
T TIGR00885       268 AGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIA  346 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            344444566666788899999999999999999998888888877777777655443 3445566677777777655 33


Q ss_pred             ccccccccccccchhhhcccCccchhhhhhhccC
Q 027462          168 QKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      .+--+|+++.-+..-....+|..+.|.+...+.+
T Consensus       347 ~~~~g~~~~~~s~~l~~~~~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       347 LKGLGQDTKYGAAGLVMAIIGGGIVPPLQGFIID  380 (410)
T ss_pred             HhhhhhhhhhhHHHHHHHHhccchHHHHHHHHHH
Confidence            3333344433233333334899889988777766

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.27  E-value=0.0022  Score=60.01  Aligned_cols=114  Identities=14%  Similarity=0.007  Sum_probs=89.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFG--RKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G--rk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      +++..+.+.+.++..+...++.++.|+++|+..  ++....++.++..++.+.+.+++++..+++.-.+.|++.|.....
T Consensus       329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l  408 (509)
T KOG2504|consen  329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSL  408 (509)
T ss_pred             CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999987  567777777777788888889999999999999999998887776


Q ss_pred             hh--hcccc-cccccccccchhhhcccCccchhhhhhhc
Q 027462          164 RY--ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       164 ~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      .+  ..+.. ..|=+.+++.+...-+++++++|.+...+
T Consensus       409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~  447 (509)
T KOG2504|consen  409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLL  447 (509)
T ss_pred             HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceee
Confidence            43  33333 23456677777777777777777665533

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.27  E-value=0.0012  Score=45.85  Aligned_cols=45  Identities=13%  Similarity=0.271  Sum_probs=40.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHH
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF  130 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~  130 (223)
                      ++++.+.+.+.+...+...++++++|.++||+++++.++....++
T Consensus        31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            479999999999999999999999999999999988877666543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.22  E-value=0.0019  Score=51.09  Aligned_cols=74  Identities=27%  Similarity=0.243  Sum_probs=56.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462           89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      +..-..-.+.......+++++.+.+.+++|.|+.++++.+...+-.+. -+-++.+.+++.-++.|++.+....+
T Consensus        36 ~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~a  109 (156)
T PF05978_consen   36 AGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTA  109 (156)
T ss_pred             ccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHh
Confidence            333333455566667777888888999999999999999988754332 34566778889999999999998887

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.18  E-value=0.0014  Score=60.93  Aligned_cols=91  Identities=12%  Similarity=0.017  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHhH----HhHHhhhchhHHHHHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHhhhhh
Q 027462           92 LAAFTSSLYISGLIASLFA----STVTRAFGRKASILVGGTAFLAGSAIGGAALN---------IYMLIFGRVLLGVGIG  158 (223)
Q Consensus        92 ~~~~~s~~~lg~~~~~~~~----g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~---------~~~l~v~r~l~G~g~g  158 (223)
                      .+++.+...+...+..++.    +++.+|++.++.+.++.++..++.++.+++.+         ..+++...++.|+|.+
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4566666666666666666    45555555668888899999888887776654         4588899999999999


Q ss_pred             hhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCccccc
Q 027462          159 FTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAG  210 (223)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~  210 (223)
                      ...+.                            +..++.+..|++.||+.+|
T Consensus       398 ~~~p~----------------------------g~s~~~~~aP~~~rg~~~g  421 (500)
T PRK09584        398 MISGL----------------------------GLAMVAQLVPQRLMGFIMG  421 (500)
T ss_pred             HHhHH----------------------------HHHHHHHhCcHHHHHHHHH
Confidence            99998                            6666667777777776666

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.11  E-value=0.0068  Score=53.75  Aligned_cols=115  Identities=12%  Similarity=0.015  Sum_probs=74.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHH-HHHHHHHHHHhh--hhhHHHHHHHHHHHhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGG-TAFLAGSAIGGA--ALNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~-l~~~~~~l~~~~--a~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      +.+..+.+++.....++..++.++.+++.||++++....... .+..+..+....  ..+...+.+..++.|+|.+...+
T Consensus       239 g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  318 (394)
T PRK11652        239 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFP  318 (394)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            357888899888888999999999999999998433322121 111111111121  12445566677888888887666


Q ss_pred             hhh--hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462          163 CRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       163 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                      ...  ..+..+++++.+.+..+....+|..+++.+.....
T Consensus       319 ~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        319 LATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            543  33344445788888888888888888887655543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.11  E-value=0.00016  Score=62.86  Aligned_cols=103  Identities=14%  Similarity=0.134  Sum_probs=77.9

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhh-hchhHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRA-FGRKASILVGGTAFLAGSAIGGA---ALNIYMLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr-~Grk~~~~~~~l~~~~~~l~~~~---a~~~~~l~v~r~l~G~g~g~~~  161 (223)
                      +++.++..++.+.+.+-.++.++++|++.|| +|-|..-++-+....++.++.+.   .+.++++..+|++.|+|.-  +
T Consensus        75 ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgE--S  152 (459)
T KOG4686|consen   75 NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGE--S  152 (459)
T ss_pred             ccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCch--h
Confidence            4577788888899999999999999999998 68887777777777778777664   5788999999999987643  3


Q ss_pred             hhhh----hccccccc-ccccccchhhhcccCcc
Q 027462          162 QCRY----ISQKWHHQ-NTEEHSPLASKYVLPLV  190 (223)
Q Consensus       162 ~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~  190 (223)
                      -+++    ..--+|+| -+.+|+.-.+-+-+|+.
T Consensus       153 lAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gst  186 (459)
T KOG4686|consen  153 LAVAQNKYAVYWFKGKELNFVFGLQLSVARLGST  186 (459)
T ss_pred             hhhhhcceeEEEecCccccchhhHHHHHHHhhce
Confidence            3332    44445777 67778777776666665

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.96  E-value=0.0059  Score=54.23  Aligned_cols=68  Identities=15%  Similarity=0.113  Sum_probs=45.3

Q ss_pred             hhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHH--HHHHHHHHHHHHhH-HhHHhhhc
Q 027462           42 TGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFT--SSLYISGLIASLFA-STVTRAFG  118 (223)
Q Consensus        42 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--s~~~lg~~~~~~~~-g~l~dr~G  118 (223)
                      ..++..|...++..+.  +|.+.++.+                  ++.++++.+.  ....+..++.+++. ++..||+|
T Consensus         8 ~ly~~~g~~~~~~~p~--lp~~l~~~g------------------~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g   67 (390)
T TIGR02718         8 LLYLSQGIPIGLAMDA--LPTLLREDG------------------APLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLG   67 (390)
T ss_pred             HHHHHHHhHHHHHHHH--HHHHHHHcC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence            3345555555555333  377777664                  6999999973  55566676777777 55789999


Q ss_pred             hhHHHHHHHHH
Q 027462          119 RKASILVGGTA  129 (223)
Q Consensus       119 rk~~~~~~~l~  129 (223)
                      ||+..++...+
T Consensus        68 ~r~~~i~~~~~   78 (390)
T TIGR02718        68 RRRSWVLPMQC   78 (390)
T ss_pred             cchhHHHHHHH
Confidence            99887666543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09669 putative symporter YagG; Provisional

Probab=96.95  E-value=0.0009  Score=60.76  Aligned_cols=110  Identities=7%  Similarity=-0.055  Sum_probs=65.3

Q ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhh----hchh-HHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHH
Q 027462           84 YCKFDSQLLAAFTSSLYISGLIASLFASTVTRA----FGRK-ASILVGGTAFLAGSAIGGAAL------NIYMLIFGRVL  152 (223)
Q Consensus        84 ~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr----~Grk-~~~~~~~l~~~~~~l~~~~a~------~~~~l~v~r~l  152 (223)
                      ++++++..++.+.+...+.-.+..|+.|.+.||    +||| +.++.+.+...+..++....+      ...++++.-.+
T Consensus        39 ~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l  118 (444)
T PRK09669         39 VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYIL  118 (444)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence            346899999999999999999999999999999    7775 445456565555544333332      23444444445


Q ss_pred             Hhhhhhhhhhhh-h-hccccc--ccccccccchhhhcccCccchh
Q 027462          153 LGVGIGFTNQCR-Y-ISQKWH--HQNTEEHSPLASKYVLPLVSYP  193 (223)
Q Consensus       153 ~G~g~g~~~~~~-~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  193 (223)
                      .+.+.......- . .++..+  ++|++..+.-.....+|.++++
T Consensus       119 ~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~  163 (444)
T PRK09669        119 LSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVS  163 (444)
T ss_pred             HHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554444322211 1 222232  2366655544444445544443

>PRK09669 putative symporter YagG; Provisional

Probab=96.91  E-value=0.009  Score=54.21  Aligned_cols=112  Identities=17%  Similarity=0.133  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHH-Hhh-hhhHHHHHHHHHHHhhhhhhhhhhhh--
Q 027462           90 QLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAI-GGA-ALNIYMLIFGRVLLGVGIGFTNQCRY--  165 (223)
Q Consensus        90 ~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~-~~~-a~~~~~l~v~r~l~G~g~g~~~~~~~--  165 (223)
                      ...+.+.....+..+++.++.+++.||+|+|+.+..+.++..+..+. ..+ .++...+++..++.|++.+...+...  
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am  343 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566667888889999999999999999998887766543332 222 24555667777888888887766532  


Q ss_pred             hcc-----ccc-cc--ccccccchhhhcccCccchhhhhhhccC
Q 027462          166 ISQ-----KWH-HQ--NTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       166 ~~~-----~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      .++     .|+ ++  ++..++..+...-+|..+++.+..-++.
T Consensus       344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222     221 22  4445555555666777778777766654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.89  E-value=0.009  Score=53.39  Aligned_cols=105  Identities=10%  Similarity=0.082  Sum_probs=62.0

Q ss_pred             CCChhHHHHHHHHHH-HHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH---hhh-hhHHHHHHHHH----HHhhh
Q 027462           86 KFDSQLLAAFTSSLY-ISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG---GAA-LNIYMLIFGRV----LLGVG  156 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~-lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~---~~a-~~~~~l~v~r~----l~G~g  156 (223)
                      ++++++.+++..... .+..++.++.+++.||+|+|+.+.++.++..+..+..   +.. ++.+.+++.-+    ..|++
T Consensus       241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  320 (402)
T PRK11902        241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMG  320 (402)
T ss_pred             CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            368889999876654 5689999999999999999998877776665554332   333 34444444433    33444


Q ss_pred             hhhhhhhhh--hcccccccccccccchhhhcccCccchh
Q 027462          157 IGFTNQCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYP  193 (223)
Q Consensus       157 ~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (223)
                      .+.......  .+++.   +.+.++.+++..+++.++.+
T Consensus       321 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~  356 (402)
T PRK11902        321 TAAFVALLMALCNRSF---SATQYALLSALASVGRVYVG  356 (402)
T ss_pred             HHHHHHHHHHhcCCCC---cHHHHHHHHHHHHHHHHHHH
Confidence            443333211  22222   23345555555555555333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.88  E-value=0.012  Score=54.48  Aligned_cols=76  Identities=17%  Similarity=0.250  Sum_probs=63.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhhhhhhhh
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL--NIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~--~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      ++............+.+++.++..++.+|+|+|+++.++.++.+++.+..-+.+  +...+++...+.++|.+...+.
T Consensus       270 ~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l  347 (467)
T COG2211         270 PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL  347 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence            455666677777788888899999999999999999999999999887776654  6777888889988888887776

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.84  E-value=0.0039  Score=56.75  Aligned_cols=112  Identities=13%  Similarity=0.067  Sum_probs=61.7

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHH--HHHHH-HhhhhhHH-HHHHHHHHHhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFL--AGSAI-GGAALNIY-MLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~--~~~l~-~~~a~~~~-~l~v~r~l~G~g~g~~~  161 (223)
                      +++.++.|.+.+...+..++.+|+.|.+.||+|.|+-++....+..  .+.+. ..+.+-.. -+.++-.+.|+..+...
T Consensus        39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f  118 (412)
T PF01306_consen   39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF  118 (412)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999997665443332222  22222 22222111 11223333344334333


Q ss_pred             hhhh-----hcccccccccccccchhhhcccCccchhhhhh
Q 027462          162 QCRY-----ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFS  197 (223)
Q Consensus       162 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (223)
                      ....     ..+++.++++..++-.+.--++|..++..+..
T Consensus       119 ~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G  159 (412)
T PF01306_consen  119 NAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAG  159 (412)
T ss_dssp             TTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhh
Confidence            3222     33455666677776665555555555544433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=96.81  E-value=0.0016  Score=59.85  Aligned_cols=106  Identities=12%  Similarity=0.013  Sum_probs=63.7

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHhHHhHHh----hhch-hHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHH
Q 027462           85 CKFDSQLLAAFTSSLYISGLIASLFASTVTR----AFGR-KASILVGGTAFLAGSAIGGAAL------NIYMLIFGRVLL  153 (223)
Q Consensus        85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~d----r~Gr-k~~~~~~~l~~~~~~l~~~~a~------~~~~l~v~r~l~  153 (223)
                      .++++..++.+....-+.-++..|+.|.++|    |+|| |+.++.+.+...++..+.-..+      .+.++++.-.+.
T Consensus        37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~  116 (473)
T PRK10429         37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW  116 (473)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence            3579999999999999999999999999999    5699 5555566666666544333222      123444444455


Q ss_pred             hhhhhhhhhhhh--hcccccc--cccccccchhhhcccCcc
Q 027462          154 GVGIGFTNQCRY--ISQKWHH--QNTEEHSPLASKYVLPLV  190 (223)
Q Consensus       154 G~g~g~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~  190 (223)
                      +++.........  .++..++  .|++..+.-.....+|.+
T Consensus       117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~  157 (473)
T PRK10429        117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGF  157 (473)
T ss_pred             HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            555444333211  2333322  366666653333344433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.81  E-value=0.019  Score=51.36  Aligned_cols=101  Identities=13%  Similarity=0.084  Sum_probs=73.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-GRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      +|.++.+++.+...+..+..++....+.+|. ++|+..+...+++.++.+-+.+.+.-..+.- .++.|+|.|..++...
T Consensus       240 ~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL  318 (395)
T COG2807         240 LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLAL  318 (395)
T ss_pred             CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHH
Confidence            7999999999999999999999999999964 6788877888888888776666654332222 4888999888888643


Q ss_pred             --hccccccc------ccccccchhhhcccC
Q 027462          166 --ISQKWHHQ------NTEEHSPLASKYVLP  188 (223)
Q Consensus       166 --~~~~~~~~------~~~~~~~~~~~~~~~  188 (223)
                        +++|.++.      ..++|++--.++..|
T Consensus       319 ~li~~rs~~a~~Aa~LSgmaQg~GYllAa~G  349 (395)
T COG2807         319 TLILLRSSDAAIAAALSGMAQGVGYLLAAFG  349 (395)
T ss_pred             HHHHhhcCChHHHHHHHHHhhhhhHHHHhhh
Confidence              66666542      344554443333333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=96.77  E-value=0.012  Score=54.28  Aligned_cols=106  Identities=8%  Similarity=-0.055  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHhhhch-----hHH--HHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHhh
Q 027462           92 LAAFTSSLYISGLIASLFASTVTRAFGR-----KAS--ILVGGTAFLAGSAIGGA---------ALNIYMLIFGRVLLGV  155 (223)
Q Consensus        92 ~~~~~s~~~lg~~~~~~~~g~l~dr~Gr-----k~~--~~~~~l~~~~~~l~~~~---------a~~~~~l~v~r~l~G~  155 (223)
                      .+++.+...+..++..++..++..+.+|     +..  +.+|.++..++.+..++         ..+++++++..++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            6677777887777777776655445444     232  36788887777666654         4588899999999999


Q ss_pred             hhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhh
Q 027462          156 GIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFS  197 (223)
Q Consensus       156 g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  197 (223)
                      |.....+...  .++..++ .|+++++.......+|..+++.+..
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~  438 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLAT  438 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988844  4444433 3666666666666666665555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.77  E-value=0.018  Score=52.07  Aligned_cols=102  Identities=17%  Similarity=0.085  Sum_probs=79.5

Q ss_pred             ccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHh-hhchhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhh
Q 027462           82 SNYCKFDSQLLAAFTSSLYISGLIASLFASTVTR-AFGRKASILVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGI  157 (223)
Q Consensus        82 ~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~d-r~Grk~~~~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~  157 (223)
                      ++.++++..+...++..+..|.+++..+.|++.. |.+.|+...+++....++..+..++   .+.+.+...-++.|++.
T Consensus       236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~  315 (403)
T PF03209_consen  236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN  315 (403)
T ss_pred             hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence            4445689999999999999999999999998887 6788888888888877766554443   45677778889999999


Q ss_pred             hhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccc
Q 027462          158 GFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGE  211 (223)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~  211 (223)
                      |.....                            .-....++..++..|..+|.
T Consensus       316 G~f~vg----------------------------als~mM~lt~~~~aG~~mG~  341 (403)
T PF03209_consen  316 GLFTVG----------------------------ALSLMMDLTSAGRAGLFMGA  341 (403)
T ss_pred             hHHHHH----------------------------HHHHHHhCCCCcchhHHHHH
Confidence            998776                            55666777777776666553

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.64  E-value=0.0058  Score=56.53  Aligned_cols=101  Identities=18%  Similarity=0.184  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh--hhhhh--hhcccc
Q 027462           95 FTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGF--TNQCR--YISQKW  170 (223)
Q Consensus        95 ~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~--~~~~~--~~~~~~  170 (223)
                      ......+...+.+++.|.+.||+|||..+.+......+..+...+..  +++++   +.++..+.  .....  +.++..
T Consensus        67 ~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis  141 (463)
T KOG2816|consen   67 KQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADIS  141 (463)
T ss_pred             HHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeecc
Confidence            33355678888999999999999999999999988888777666665  33333   33322221  11111  266777


Q ss_pred             ccc-ccccccchhhhcccCccchhhhhhhcc
Q 027462          171 HHQ-NTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       171 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                      +++ |+..++.+.+.++++.+++|+...-..
T Consensus       142 ~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~  172 (463)
T KOG2816|consen  142 SEEERSSSIGLLSGTFGAGLVIGPALGGYLV  172 (463)
T ss_pred             chhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            665 999999999999999998988654443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.60  E-value=0.007  Score=56.20  Aligned_cols=102  Identities=11%  Similarity=0.013  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHhhhchhH-------HHHHHHHHHHHHHHHHh-----hh-----hhHHHHHHHHHHHh
Q 027462           92 LAAFTSSLYISGLIASLFASTVTRAFGRKA-------SILVGGTAFLAGSAIGG-----AA-----LNIYMLIFGRVLLG  154 (223)
Q Consensus        92 ~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~-------~~~~~~l~~~~~~l~~~-----~a-----~~~~~l~v~r~l~G  154 (223)
                      ..++.+...+..++..++.+++.||+++|+       .+.+|.++..++.+..+     .+     .+.++++..-++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            456666676777788888999999999886       36677777666654321     11     34667778888999


Q ss_pred             hhhhhhhhhhh--hccccccc-ccccccchhhhcccCccchh
Q 027462          155 VGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYP  193 (223)
Q Consensus       155 ~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  193 (223)
                      +|.+...+...  .....+++ ++.+++.......+|..++.
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~  432 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGG  432 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888732  22222222 55555555544445544443

>PRK11462 putative transporter; Provisional

Probab=96.42  E-value=0.062  Score=49.39  Aligned_cols=74  Identities=14%  Similarity=0.078  Sum_probs=46.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh-hh-hHHHHHHHHHHHhhhhhhhhh
Q 027462           89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA-AL-NIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~-a~-~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      +...+++...+.++.+++.++++++.||+|+|+.+..+..+..+..++..+ .. +...+++.-++.|++.+...+
T Consensus       262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  337 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTP  337 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            344556777888888999999999999999998876555444333332222 22 222334444556666555443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.30  E-value=0.074  Score=48.25  Aligned_cols=113  Identities=11%  Similarity=0.065  Sum_probs=79.9

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      +++..+.+...+.+..+.++|.+++.++..|+...+.+.+..++..+-.+..++.++...+ ..-++.|+..+..+|..+
T Consensus       268 g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l~~ig~F~simfPTIf  346 (422)
T COG0738         268 GLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YALFLIGLFNSIMFPTIF  346 (422)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHhHHHHHHHH
Confidence            3578888999999999999999999999999999999888888777777777777774433 345566777777777643


Q ss_pred             --hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462          166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                        ..+..+ +-+..-+.+-.-..+|..+.|.+..-..
T Consensus       347 slal~~l~-~~ts~~s~~l~maivGGAiiP~l~G~i~  382 (422)
T COG0738         347 SLALKNLG-EHTSVGSGLLVMAIVGGAIIPPLQGVIA  382 (422)
T ss_pred             HHHHhccC-ccccccceeeeeheecchHHHHHHHHHH
Confidence              222222 3344445555556677776776554443

>TIGR00788 fbt folate/biopterin transporter

Probab=96.29  E-value=0.0079  Score=55.48  Aligned_cols=111  Identities=8%  Similarity=-0.092  Sum_probs=80.7

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHh
Q 027462           85 CKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA----------LNIYMLIFGRVLLG  154 (223)
Q Consensus        85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a----------~~~~~l~v~r~l~G  154 (223)
                      .++++.+.+.+.....++.+++..+.+++.+|++.|+.+.++.++..++.+...+.          ++...+....++.+
T Consensus       283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~  362 (468)
T TIGR00788       283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE  362 (468)
T ss_pred             CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence            46799999999999999999999999999999999999999999888877543211          22223334455666


Q ss_pred             hhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhh
Q 027462          155 VGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLI  195 (223)
Q Consensus       155 ~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  195 (223)
                      ++.+.......  ....-++ .+++.++.+.+...+|.++++.+
T Consensus       363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~  406 (468)
T TIGR00788       363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFL  406 (468)
T ss_pred             HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHH
Confidence            66655544422  3444433 48888888888888888877753

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=96.25  E-value=0.01  Score=53.95  Aligned_cols=77  Identities=14%  Similarity=0.157  Sum_probs=51.0

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh----chhHHH-HHHHHHHHHHHHH-Hhh----hh--hHHHHHHHHHHH
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAF----GRKASI-LVGGTAFLAGSAI-GGA----AL--NIYMLIFGRVLL  153 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~----Grk~~~-~~~~l~~~~~~l~-~~~----a~--~~~~l~v~r~l~  153 (223)
                      +++..+++.+.+...+...+..++.|+++||.    |||+.. +.+.+...+..++ ...    ++  ...++++.-.+.
T Consensus        40 gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (448)
T PRK09848         40 GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGL  119 (448)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHH
Confidence            57999999999999999999999999999997    776654 4454444333322 222    11  123334444566


Q ss_pred             hhhhhhhhh
Q 027462          154 GVGIGFTNQ  162 (223)
Q Consensus       154 G~g~g~~~~  162 (223)
                      +++.+...+
T Consensus       120 ~~~~~~~~~  128 (448)
T PRK09848        120 GLCYSLVNI  128 (448)
T ss_pred             HHHHHHhcc
Confidence            666666554

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.20  E-value=0.0011  Score=62.41  Aligned_cols=112  Identities=22%  Similarity=0.191  Sum_probs=2.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh------------------------
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL------------------------  141 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~------------------------  141 (223)
                      +++.++.|++.+.+-++.++..++..++.+|-.|-+.+-++.+++.++++++++.+                        
T Consensus        34 ~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~  113 (539)
T PF03137_consen   34 GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNL  113 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccc
Confidence            37999999999999999999999999999999888999999999999988876531                        


Q ss_pred             --------------------------hHHHHHHHHHHHhhhhhhhhhhh--hhccccccc-ccccccchhhhcccCccch
Q 027462          142 --------------------------NIYMLIFGRVLLGVGIGFTNQCR--YISQKWHHQ-NTEEHSPLASKYVLPLVSY  192 (223)
Q Consensus       142 --------------------------~~~~l~v~r~l~G~g~g~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  192 (223)
                                                -+..+++++++.|+|....++..  |+++.-+++ .+.+.+++.+...+|..++
T Consensus       114 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~G  193 (539)
T PF03137_consen  114 CDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALG  193 (539)
T ss_dssp             --------------------------------------SSS---------------------------------------
T ss_pred             ccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHH
Confidence                                      01456678889999988877754  477777665 7778888887777777766


Q ss_pred             hhhhh
Q 027462          193 PLIFS  197 (223)
Q Consensus       193 ~~~~~  197 (223)
                      .++.+
T Consensus       194 f~lg~  198 (539)
T PF03137_consen  194 FLLGS  198 (539)
T ss_dssp             -----
T ss_pred             HHHHH
Confidence            55443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=96.10  E-value=0.0028  Score=57.30  Aligned_cols=107  Identities=11%  Similarity=0.033  Sum_probs=68.7

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHh----hhchhHHHH-HHHHHHHHHHHHHhhh-h-------hHHHHHHHHHH
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTR----AFGRKASIL-VGGTAFLAGSAIGGAA-L-------NIYMLIFGRVL  152 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~d----r~Grk~~~~-~~~l~~~~~~l~~~~a-~-------~~~~l~v~r~l  152 (223)
                      ++++...+.+.....+--++..|+.|.+.|    |+|||+..+ ++.+...++..+.... +       ...++++.-++
T Consensus        33 gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l  112 (428)
T PF13347_consen   33 GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYIL  112 (428)
T ss_pred             CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence            579999999999999999999999999999    899876555 5666666666555544 3       12334444455


Q ss_pred             Hhhhhhhhhhhhh--hcccccc--cccccccchhhhcccCccch
Q 027462          153 LGVGIGFTNQCRY--ISQKWHH--QNTEEHSPLASKYVLPLVSY  192 (223)
Q Consensus       153 ~G~g~g~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~  192 (223)
                      ..++.......-.  .++..++  +|++..+.-.....+|.++.
T Consensus       113 ~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~  156 (428)
T PF13347_consen  113 FDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLA  156 (428)
T ss_pred             HHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHH
Confidence            5555554433211  3333333  36776666666666666433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.08  E-value=0.045  Score=52.81  Aligned_cols=112  Identities=13%  Similarity=0.158  Sum_probs=77.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhh-hchhHHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRA-FGRKASILVGGTAFLAGSAIGGAALN--------IYMLIFGRVLLGVG  156 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr-~Grk~~~~~~~l~~~~~~l~~~~a~~--------~~~l~v~r~l~G~g  156 (223)
                      +++++....+...+.....+.++++|.++|+ +||++.+.++.++..++.++.+++..        ....+++-++..+|
T Consensus        19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G   98 (654)
T TIGR00926        19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG   98 (654)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence            4678888888888888888899999999998 69999999999999999887766411        12345666677778


Q ss_pred             hhhhhhhhh--hcccccc----cccccccchhhhcccCccchhhhhh
Q 027462          157 IGFTNQCRY--ISQKWHH----QNTEEHSPLASKYVLPLVSYPLIFS  197 (223)
Q Consensus       157 ~g~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  197 (223)
                      .|+.-++..  ..+-+++    ++...|...--.-.+|+++++.+..
T Consensus        99 ~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~  145 (654)
T TIGR00926        99 TGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITP  145 (654)
T ss_pred             ccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777654  3333432    2444555554444567666655443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=95.67  E-value=0.009  Score=55.01  Aligned_cols=92  Identities=13%  Similarity=-0.016  Sum_probs=58.4

Q ss_pred             HHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHhhhhhhhhhhhhhcccccc
Q 027462          101 ISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNI--------YMLIFGRVLLGVGIGFTNQCRYISQKWHH  172 (223)
Q Consensus       101 lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~--------~~l~v~r~l~G~g~g~~~~~~~~~~~~~~  172 (223)
                      ++.+.+-++...+.|++|||+..+.+++++.+..++.+...+.        ..+.+..++.-+|-+...-. .-+..+..
T Consensus       359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfi-vpaE~FPa  437 (538)
T KOG0252|consen  359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFI-VPAEIFPA  437 (538)
T ss_pred             HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEE-eehhhchH
Confidence            3444466777889999999999999999999999888887651        12222333333443322111 13345555


Q ss_pred             c-ccccccchhhhcccCccchh
Q 027462          173 Q-NTEEHSPLASKYVLPLVSYP  193 (223)
Q Consensus       173 ~-~~~~~~~~~~~~~~~~~~~~  193 (223)
                      | |++.+++-.+.-=.|++++.
T Consensus       438 rvR~t~hGIsAA~GK~GAivg~  459 (538)
T KOG0252|consen  438 RVRSTCHGISAASGKAGAIVGA  459 (538)
T ss_pred             HHhhhhhhHHHHhccchHHHHH
Confidence            5 77777776666556666553

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=95.66  E-value=0.00016  Score=65.26  Aligned_cols=41  Identities=24%  Similarity=0.356  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh
Q 027462           98 SLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG  138 (223)
Q Consensus        98 ~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~  138 (223)
                      ...+...++.++...+.||+|||+.++.+.++.+++.+..+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~  334 (451)
T PF00083_consen  294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILG  334 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc
Confidence            33345556677777999999999999999888877766554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=95.44  E-value=0.25  Score=44.53  Aligned_cols=78  Identities=14%  Similarity=0.106  Sum_probs=47.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA-----ALNIYMLIFGRVLLGVGIGFT  160 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~-----a~~~~~l~v~r~l~G~g~g~~  160 (223)
                      ++++.+.++.......+..++..+.+.+.++..+++.......+..++.++...     .+++...++..++.++|.+..
T Consensus       250 g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~  329 (413)
T PRK15403        250 GMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLI  329 (413)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence            468899999888888888888888888765444433332222333333322221     233334566777888888877


Q ss_pred             hhh
Q 027462          161 NQC  163 (223)
Q Consensus       161 ~~~  163 (223)
                      .+.
T Consensus       330 ~p~  332 (413)
T PRK15403        330 FPT  332 (413)
T ss_pred             hHH
Confidence            665

>PRK11462 putative transporter; Provisional

Probab=95.29  E-value=0.048  Score=50.10  Aligned_cols=112  Identities=8%  Similarity=-0.058  Sum_probs=66.3

Q ss_pred             cccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhh----hchhHHHH-HHHHHHHHHHHHHhhhhh------HHHHHHHHH
Q 027462           83 NYCKFDSQLLAAFTSSLYISGLIASLFASTVTRA----FGRKASIL-VGGTAFLAGSAIGGAALN------IYMLIFGRV  151 (223)
Q Consensus        83 ~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr----~Grk~~~~-~~~l~~~~~~l~~~~a~~------~~~l~v~r~  151 (223)
                      |..++++..++.+....-+-=++.-|+.|.++||    +|||+..+ ++.+...++.++.-..+.      ..++.+.-.
T Consensus        38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~  117 (460)
T PRK11462         38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT  117 (460)
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence            3456899999999999999999999999999996    68865554 555666655444332221      233444444


Q ss_pred             HHhhhhhhhhhhhh--hcccccc--cccccccchhhhcccCccchhh
Q 027462          152 LLGVGIGFTNQCRY--ISQKWHH--QNTEEHSPLASKYVLPLVSYPL  194 (223)
Q Consensus       152 l~G~g~g~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  194 (223)
                      +..++.......-.  .+...++  +|++..+.-.....+|..+.+.
T Consensus       118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~  164 (460)
T PRK11462        118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTV  164 (460)
T ss_pred             HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444332211  2222232  3666666666555555544443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.25  E-value=0.076  Score=49.60  Aligned_cols=121  Identities=14%  Similarity=0.055  Sum_probs=68.7

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhh----hchhHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRA----FGRKASILVGGTAFLAGS-AIGGAALNIYMLIFGRVLLGVGIGFT  160 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr----~Grk~~~~~~~l~~~~~~-l~~~~a~~~~~l~v~r~l~G~g~g~~  160 (223)
                      +++..+.+.+...+..+.+++.+++|++.||    ..+|..+.....+..... .........+.....-.....+.+..
T Consensus       305 ~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~  384 (495)
T KOG2533|consen  305 GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIAT  384 (495)
T ss_pred             CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHH
Confidence            3588999999999999999999999999999    667766666555554433 33333322222222122222223222


Q ss_pred             hhhhh--hcccc--cccccccccchhhhcccCcc-chhhhhhhccCCCCCc
Q 027462          161 NQCRY--ISQKW--HHQNTEEHSPLASKYVLPLV-SYPLIFSITAPKRSRG  206 (223)
Q Consensus       161 ~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~rg  206 (223)
                      .++..  .+.-.  +.||....+....+++++.. .++.+.+...|.-.++
T Consensus       385 ~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~  435 (495)
T KOG2533|consen  385 AIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWG  435 (495)
T ss_pred             HHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhh
Confidence            22221  22222  33466666666666664444 4555555556643333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.18  E-value=0.027  Score=51.11  Aligned_cols=114  Identities=12%  Similarity=-0.006  Sum_probs=74.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh-HHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh-
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRK-ASIL-VGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR-  164 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk-~~~~-~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~-  164 (223)
                      +.++++...--..+.+.++..+.|.+.||++.- +... .+.+..........+++++..+++-++..+++.+...... 
T Consensus       304 p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~  383 (464)
T KOG3764|consen  304 PGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLI  383 (464)
T ss_pred             CCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHh
Confidence            445777777778889999999999999999943 3333 3333333445556678999999988888877766655432 


Q ss_pred             h-----hcccccc---cccccccchhhhcccCccchhhhhhhccC
Q 027462          165 Y-----ISQKWHH---QNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       165 ~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      +     .+.+-.+   .=+..+++-...|++|..++|.+..+...
T Consensus       384 P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~  428 (464)
T KOG3764|consen  384 PTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE  428 (464)
T ss_pred             hhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee
Confidence            1     1221111   12334455556677888888887666554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=94.94  E-value=0.14  Score=47.74  Aligned_cols=93  Identities=15%  Similarity=0.127  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhHHhhhchh-------HHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHh
Q 027462           91 LLAAFTSSLYISGLIASLFASTVTRAFGRK-------ASILVGGTAFLAGSAIGGAA---------LNIYMLIFGRVLLG  154 (223)
Q Consensus        91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk-------~~~~~~~l~~~~~~l~~~~a---------~~~~~l~v~r~l~G  154 (223)
                      ..+|+.+.+.+..++.+|+.+++-.|.+||       .-+.++.++..++.++..++         .+..++++.-++.+
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            356777888887778888877776776332       13667777777776655432         25577888889999


Q ss_pred             hhhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccc
Q 027462          155 VGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGE  211 (223)
Q Consensus       155 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~  211 (223)
                      +|.-...|.                            +...+++..|++.||+.+|.
T Consensus       389 ~gEl~~sPv----------------------------gls~~~~laP~~~~g~~mg~  417 (493)
T PRK15462        389 FAELFIDPV----------------------------AMSQITRIEIPGVTGVLTGI  417 (493)
T ss_pred             HHHHHHChH----------------------------HHHHHHHhChHHHHHHHHHH
Confidence            999999998                            88888899998888888875

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=94.70  E-value=0.07  Score=50.92  Aligned_cols=111  Identities=14%  Similarity=-0.028  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhHHhhhch-hHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462           90 QLLAAFTSSLYISGLIASLFASTVTRAFGR-KASILVGGTAFLAGSAIGGAA--LNIYMLIFGRVLLGVGIGFTNQCRY-  165 (223)
Q Consensus        90 ~~~~~~~s~~~lg~~~~~~~~g~l~dr~Gr-k~~~~~~~l~~~~~~l~~~~a--~~~~~l~v~r~l~G~g~g~~~~~~~-  165 (223)
                      ...+++.....++..+++++.|.+..+++| |+.++++.+++.++.-+++..  +|....+..-++.|+|.|....... 
T Consensus       349 ~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~  428 (599)
T PF06609_consen  349 TEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIV  428 (599)
T ss_pred             ceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHH
Confidence            356788888999999999999999998877 677677777766543333332  4545556677788888887766543 


Q ss_pred             -hccccccc-ccccccchhhhcccCccchhhhhhhcc
Q 027462          166 -ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITA  200 (223)
Q Consensus       166 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (223)
                       ..-..+++ =..+.+...+.+.+|..++..+-..++
T Consensus       429 ~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  429 IAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             eeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             22222333 566777777778777777766554443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=94.45  E-value=0.2  Score=46.47  Aligned_cols=115  Identities=14%  Similarity=0.132  Sum_probs=90.6

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHhHH-hHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462           85 CKFDSQLLAAFTSSLYISGLIASLFAS-TVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g-~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      .++++++.+.+.+.......++.++.. .+...+|-|+.+.+|.+...+..+..+++++.++++...++.++........
T Consensus       272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~  351 (463)
T KOG2816|consen  272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFPAI  351 (463)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhHHH
Confidence            357999999888888888888887776 7777889899999999999999999999999888888777776554443333


Q ss_pred             hhhcccc--cccccccccchhhhcccCccchhhhhhhc
Q 027462          164 RYISQKW--HHQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       164 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      +.+..++  +++++..++.++...++..++.|.+....
T Consensus       352 ~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  352 RAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             HhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            3455555  44599999999999998888888765443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=94.17  E-value=0.43  Score=44.40  Aligned_cols=74  Identities=15%  Similarity=0.042  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHH-HHHHHHhhh--hhHHHHHHHHHHHhhhhhhhhhh
Q 027462           90 QLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFL-AGSAIGGAA--LNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        90 ~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~-~~~l~~~~a--~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      +..++..+...+-..+..|+.|-++|+-|+|+.++..+.+.. +......+.  .++....+.-.+.-++.+.....
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vf  146 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVF  146 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            445677888889999999999999999998776665555444 344444442  33333334444445566666666

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.09  E-value=0.027  Score=54.67  Aligned_cols=112  Identities=22%  Similarity=0.155  Sum_probs=92.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh-----------h------------
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL-----------N------------  142 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~-----------~------------  142 (223)
                      +++.++.|++.+.+-++..+...+..++..|..|-+.+-+|.+++.++++++++.+           .            
T Consensus       128 ~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~  207 (735)
T KOG3626|consen  128 KISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSL  207 (735)
T ss_pred             CCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCcccc
Confidence            47899999999999999999999999999999999999999999999999887641           0            


Q ss_pred             -----------------------------HHHHHHHHHHHhhhhhhhhhhh--hhccccccc-ccccccchhhhcccCcc
Q 027462          143 -----------------------------IYMLIFGRVLLGVGIGFTNQCR--YISQKWHHQ-NTEEHSPLASKYVLPLV  190 (223)
Q Consensus       143 -----------------------------~~~l~v~r~l~G~g~g~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~  190 (223)
                                                   +..++++.++.|+|....++..  |+++.-+++ .+...+++.+.+.+|.+
T Consensus       208 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPa  287 (735)
T KOG3626|consen  208 SFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPA  287 (735)
T ss_pred             chhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhH
Confidence                                         1245678889999988877754  577777665 78888999988888888


Q ss_pred             chhhhhh
Q 027462          191 SYPLIFS  197 (223)
Q Consensus       191 ~~~~~~~  197 (223)
                      ++.++.+
T Consensus       288 iGfllgS  294 (735)
T KOG3626|consen  288 IGFLLGS  294 (735)
T ss_pred             HHHHHHH
Confidence            7766543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=94.04  E-value=0.031  Score=52.44  Aligned_cols=107  Identities=10%  Similarity=0.026  Sum_probs=81.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--  165 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--  165 (223)
                      .++..|........|-+..=++.+++.+++|+-+++.+++.+..+-.+......|.++.....+++|+..+....+..  
T Consensus       404 ~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY  483 (618)
T KOG3762|consen  404 IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISY  483 (618)
T ss_pred             cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHH
Confidence            455566656666667777778889999999999999999999998888889999999999999999999999988742  


Q ss_pred             hccccccc-ccccccchhhh-----cccCccchhh
Q 027462          166 ISQKWHHQ-NTEEHSPLASK-----YVLPLVSYPL  194 (223)
Q Consensus       166 ~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~  194 (223)
                      +|..-.++ |..++++++.+     -++|++|+..
T Consensus       484 ~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~  518 (618)
T KOG3762|consen  484 ASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGF  518 (618)
T ss_pred             HHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhh
Confidence            55555444 66666655443     3455555544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=93.39  E-value=0.93  Score=42.23  Aligned_cols=71  Identities=14%  Similarity=-0.040  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHhhhch-hHHHHHHHHHHHHHHHHHhhhhh---------------------HHHHHHHH
Q 027462           93 AAFTSSLYISGLIASLFASTVTRAFGR-KASILVGGTAFLAGSAIGGAALN---------------------IYMLIFGR  150 (223)
Q Consensus        93 ~~~~s~~~lg~~~~~~~~g~l~dr~Gr-k~~~~~~~l~~~~~~l~~~~a~~---------------------~~~l~v~r  150 (223)
                      .|....+.+...+.+++..++.+++|+ |+...++.++..++.+...+-++                     ....++..
T Consensus       308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  387 (477)
T TIGR01301       308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF  387 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence            344555556666778888999999984 77778887777777665554322                     25566677


Q ss_pred             HHHhhhhhhhhhh
Q 027462          151 VLLGVGIGFTNQC  163 (223)
Q Consensus       151 ~l~G~g~g~~~~~  163 (223)
                      .+.|+..+..+..
T Consensus       388 ~~~Gi~~A~~~si  400 (477)
T TIGR01301       388 AILGIPLAITYSI  400 (477)
T ss_pred             HHhhHHHHHHHHH
Confidence            7888888887777

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=92.92  E-value=0.42  Score=44.28  Aligned_cols=95  Identities=15%  Similarity=0.020  Sum_probs=60.9

Q ss_pred             HHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHhhhhhhhhhhh--hhccccccc-cc
Q 027462          102 SGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYM---LIFGRVLLGVGIGFTNQCR--YISQKWHHQ-NT  175 (223)
Q Consensus       102 g~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~---l~v~r~l~G~g~g~~~~~~--~~~~~~~~~-~~  175 (223)
                      ....+....+...|++|||.....+.++..++.++.++......   ..+...+..++.+....+.  +........ |.
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~  441 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN  441 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            55555666689999999999999999999999888887643222   2333333333333333332  244455443 77


Q ss_pred             ccccchhhhcccCccchhhhh
Q 027462          176 EEHSPLASKYVLPLVSYPLIF  196 (223)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~  196 (223)
                      .+.+..+...-+|.+++|.+.
T Consensus       442 ~~~~~~~~~~~~~~i~ap~~~  462 (521)
T KOG0255|consen  442 TAVGAISAAARLGSILAPLFP  462 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777666654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=92.82  E-value=0.63  Score=42.30  Aligned_cols=98  Identities=17%  Similarity=0.219  Sum_probs=67.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc-----hhHHHHHHHHH-HHHHHHHHhhh-----h--------hHH--
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFG-----RKASILVGGTA-FLAGSAIGGAA-----L--------NIY--  144 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G-----rk~~~~~~~l~-~~~~~l~~~~a-----~--------~~~--  144 (223)
                      .++...++.+.+...+.+. ..+..|..+|+.+     ||..++..-.+ +..+..+...+     .        .+.  
T Consensus        11 ~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~   89 (403)
T PF03209_consen   11 GVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGL   89 (403)
T ss_pred             ccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHH
Confidence            4678888888888777665 4788999999999     88666654444 44433333221     2        222  


Q ss_pred             -HHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccch
Q 027462          145 -MLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGES  212 (223)
Q Consensus       145 -~l~v~r~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~  212 (223)
                       ...+.-++.|+|.+.....                            .-.+..+..|+++|++++++.
T Consensus        90 ~~a~l~F~l~G~G~~~s~T~----------------------------~lALl~D~~~e~~R~~~v~iv  130 (403)
T PF03209_consen   90 ALAALAFLLYGLGVHASGTS----------------------------FLALLADLAPEERRPRVVAIV  130 (403)
T ss_pred             HHHHHHHHHHHhhHhHhHHH----------------------------HHHHHHhcCCHhhhhhhHHHH
Confidence             2334556778888887777                            777888888888888888864

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=92.80  E-value=0.26  Score=46.43  Aligned_cols=55  Identities=9%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHH-HHHHhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAG-SAIGGAA  140 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~-~l~~~~a  140 (223)
                      ++++.+.+.++..-.+..+++.|++|+++||+-+|+.++++.++..+. .++..+.
T Consensus        42 Gl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv   97 (618)
T KOG3762|consen   42 GLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV   97 (618)
T ss_pred             CCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence            379999999999999999999999999999998877777777766544 3444443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=92.65  E-value=0.28  Score=45.52  Aligned_cols=82  Identities=16%  Similarity=0.179  Sum_probs=57.1

Q ss_pred             ccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhh----hchh-HHHHHHHHHHHHHHHHHhhhh------hHHHHHHHH
Q 027462           82 SNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRA----FGRK-ASILVGGTAFLAGSAIGGAAL------NIYMLIFGR  150 (223)
Q Consensus        82 ~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr----~Grk-~~~~~~~l~~~~~~l~~~~a~------~~~~l~v~r  150 (223)
                      +|..++++..++.+....-+-=++.-|+.|.+.||    +||+ +-++.+.+...+...++-.++      +.....+.-
T Consensus        40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY  119 (467)
T COG2211          40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTY  119 (467)
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHH
Confidence            34557899999999988888889999999999997    6764 555566677766666555554      233444555


Q ss_pred             HHHhhhhhhhhhh
Q 027462          151 VLLGVGIGFTNQC  163 (223)
Q Consensus       151 ~l~G~g~g~~~~~  163 (223)
                      .+.++++......
T Consensus       120 ~l~~l~YT~vniP  132 (467)
T COG2211         120 MLLGLGYTLVNIP  132 (467)
T ss_pred             HHHHHHHHheeCc
Confidence            5666666655443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=92.48  E-value=0.23  Score=45.89  Aligned_cols=111  Identities=16%  Similarity=0.190  Sum_probs=64.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhh----hchhHHHHHHHHHHH-HHHHHHhhhhhHHHHH------------HH
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRA----FGRKASILVGGTAFL-AGSAIGGAALNIYMLI------------FG  149 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr----~Grk~~~~~~~l~~~-~~~l~~~~a~~~~~l~------------v~  149 (223)
                      ++....+.+--+..+...+.+|+.|...||    +||||.++.+..... ++.++.+.+.++..++            +.
T Consensus        64 vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~  143 (498)
T KOG0637|consen   64 VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIV  143 (498)
T ss_pred             CCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHH
Confidence            455555555556667777888999998886    899888776655554 4555666665442221            12


Q ss_pred             HHHHhhh-----hhh-hhhhhh-hcccccc--cccccccchhhhcccCccchhhhhh
Q 027462          150 RVLLGVG-----IGF-TNQCRY-ISQKWHH--QNTEEHSPLASKYVLPLVSYPLIFS  197 (223)
Q Consensus       150 r~l~G~g-----~g~-~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  197 (223)
                      -++.|+.     .-. --++++ +.+...+  |++++.+.....-++|.+++.+.-+
T Consensus       144 ~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  144 LFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             HHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            2222321     100 111222 3443422  3444999998888899888876443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=92.41  E-value=1  Score=41.18  Aligned_cols=76  Identities=9%  Similarity=0.019  Sum_probs=48.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHH-HHHHHHHHHHHHhhhhh--HH-HHHHHHHHHhhhhhhhhhh
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILV-GGTAFLAGSAIGGAALN--IY-MLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~-~~l~~~~~~l~~~~a~~--~~-~l~v~r~l~G~g~g~~~~~  163 (223)
                      +.+.++...+...+..++-+|+.|.++|+.|+|+.... ...+-.+..+...+.++  .. ...+.-.+..++.......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            34566777888888889999999999999997665544 44444444444444433  33 3344455666666655554

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.20  E-value=0.03  Score=48.62  Aligned_cols=75  Identities=15%  Similarity=0.209  Sum_probs=54.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG---AALNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~---~a~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      ++...+++.+.-+.+-..++...+.|-++|+.|||+.-+    .+++.+.++.   .++.+..++++|++.|+.-+....
T Consensus        68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracv----tycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFS  143 (454)
T KOG4332|consen   68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV----TYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFS  143 (454)
T ss_pred             CccCCccceeeecccchHHHHHHHHHHHHhhhcccccee----eehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHH
Confidence            356667766666666666777778888999999998644    3444444444   457888999999999998777666


Q ss_pred             hh
Q 027462          163 CR  164 (223)
Q Consensus       163 ~~  164 (223)
                      +.
T Consensus       144 aF  145 (454)
T KOG4332|consen  144 AF  145 (454)
T ss_pred             HH
Confidence            53

>PTZ00207 hypothetical protein; Provisional

Probab=91.30  E-value=0.65  Score=44.41  Aligned_cols=108  Identities=10%  Similarity=-0.021  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHhHHhHH---hh------hchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           95 FTSSLYISGLIASLFASTVT---RA------FGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        95 ~~s~~~lg~~~~~~~~g~l~---dr------~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      +.+.+.++.++|.+..|.+.   .|      +- |+..+....++.++.++.++......+.+.-++.|++.|...++..
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~p-rt~~l~~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~  474 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVP-ITIALFIPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA  474 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccc-hhHHHHHHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence            56667777777777777665   11      22 2233333333666666666664335888999999999999888743


Q ss_pred             --hcccccccccccccchhhhcccCccchh-hhhhhccCCC
Q 027462          166 --ISQKWHHQNTEEHSPLASKYVLPLVSYP-LIFSITAPKR  203 (223)
Q Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~  203 (223)
                        .|..|-+-=++-+++....-.+|+.+.. .+..++.+.+
T Consensus       475 ~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~e  515 (591)
T PTZ00207        475 LVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQ  515 (591)
T ss_pred             HHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence              5666653255566666666666666542 3455555543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.12  E-value=0.7  Score=42.83  Aligned_cols=67  Identities=25%  Similarity=0.323  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462           96 TSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        96 ~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      .++......+.+++.+.+.|..|.|+.+.++...+.+..+..-. .|-..+++.-++.|+|.+.....
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~G  122 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTG  122 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecc
Confidence            66777788889999999999999999999999988776554333 44566778899999999976664

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=89.25  E-value=2.9  Score=38.28  Aligned_cols=78  Identities=10%  Similarity=0.041  Sum_probs=62.8

Q ss_pred             cCCChhHHHH-HHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462           85 CKFDSQLLAA-FTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        85 ~~~s~~~~~~-~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      .+++..++.- +.-...-..++.-++...+.|.++.|++++++.+...+...+.-+.++...+-+..++.|+..+....
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~eva  113 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVA  113 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence            3466666643 44444556677778888999999999999999999999999888999999999999999988776544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=88.59  E-value=2.3  Score=40.90  Aligned_cols=49  Identities=8%  Similarity=0.013  Sum_probs=38.0

Q ss_pred             CCChhHHHHHHHHHHH-HHHHHHHhHHhHHhhhc--hhHHHHHHHHHHHHHH
Q 027462           86 KFDSQLLAAFTSSLYI-SGLIASLFASTVTRAFG--RKASILVGGTAFLAGS  134 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~l-g~~~~~~~~g~l~dr~G--rk~~~~~~~l~~~~~~  134 (223)
                      ++++.+.+++.....+ +.+++.+++|++.||++  .|+.+..+.++..++.
T Consensus       362 g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~  413 (633)
T TIGR00805       362 GISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY  413 (633)
T ss_pred             CCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence            4789999998887765 67899999999999998  4566666666555553

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=88.22  E-value=6.1  Score=36.40  Aligned_cols=98  Identities=17%  Similarity=0.174  Sum_probs=68.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh------h----hHHHHHHHHHHHhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA------L----NIYMLIFGRVLLGV  155 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a------~----~~~~l~v~r~l~G~  155 (223)
                      ++++..++.+-+...+..+.+.++..++.+|+|..+.=+.+.....+...++..+      +    +...++.+-++.=+
T Consensus       289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~  368 (432)
T PF06963_consen  289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI  368 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence            3799999999999999999999999999999998877777766665443333221      1    22233333333334


Q ss_pred             hhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccc
Q 027462          156 GIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGE  211 (223)
Q Consensus       156 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~  211 (223)
                      |.=....+                            ..-++.|..|.++||...|.
T Consensus       369 GLW~fDL~----------------------------~~qi~Qe~V~~~~Rg~v~gv  396 (432)
T PF06963_consen  369 GLWSFDLA----------------------------VTQIMQENVPESERGAVSGV  396 (432)
T ss_pred             HHHhhhHH----------------------------HHHhhcccCCHHHhhHHHHH
Confidence            44334444                            56678899999999998875

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=87.56  E-value=0.96  Score=41.14  Aligned_cols=121  Identities=14%  Similarity=0.045  Sum_probs=86.6

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462           85 CKFDSQLLAAFTSSLYISGLIASLFASTVTRAFG--RKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G--rk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      +++++.++|-+.+...++.++.+....+..||..  -|..+....++..-..++.+.+.+..++..+..+-.+..+...+
T Consensus       292 fg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt  371 (451)
T KOG2615|consen  292 FGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVT  371 (451)
T ss_pred             cCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhH
Confidence            4679999999999999999999999899999887  67777767666666667777777777777777777766665555


Q ss_pred             hhh--hcccc-cccccccccchhhhcccCccchhhhh---hhccCCCCC
Q 027462          163 CRY--ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIF---SITAPKRSR  205 (223)
Q Consensus       163 ~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~r  205 (223)
                      +..  ..... +++|+.+.++..+.-+++=.++|+..   .+|.+.+..
T Consensus       372 ~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~  420 (451)
T KOG2615|consen  372 CLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQP  420 (451)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCc
Confidence            533  22222 45688888877777777777777754   456655433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=85.15  E-value=8.1  Score=36.18  Aligned_cols=92  Identities=18%  Similarity=0.076  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhHHhhhchh-------HHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHH
Q 027462           91 LLAAFTSSLYISGLIASLFASTVTRAFGRK-------ASILVGGTAFLAGSAIGGAA----------LNIYMLIFGRVLL  153 (223)
Q Consensus        91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk-------~~~~~~~l~~~~~~l~~~~a----------~~~~~l~v~r~l~  153 (223)
                      ..+|..+...+.-++.+++..++..+.++|       .-+-++..+..++.++...+          .+..+++..-+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            445677777777788888888888775544       33445555555555544433          2467888888999


Q ss_pred             hhhhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCccccc
Q 027462          154 GVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAG  210 (223)
Q Consensus       154 G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~  210 (223)
                      ++|.=..++.                            +-.+++...|+...++.++
T Consensus       405 s~gEL~iSpv----------------------------GLs~~t~laP~~~~s~~ma  433 (498)
T COG3104         405 SFGELFISPV----------------------------GLSMVTKLAPPALKSFIMA  433 (498)
T ss_pred             HHHHHHhCHH----------------------------HHHHHHHhChHHHHHHHHH
Confidence            9998888888                            7777788888777777665

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=85.10  E-value=4.2  Score=37.14  Aligned_cols=109  Identities=11%  Similarity=0.063  Sum_probs=64.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc-----hhHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFG-----RKASILVGGTAFLAGSAIGGAA----LNIYMLIFGRVLLGVG  156 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G-----rk~~~~~~~l~~~~~~l~~~~a----~~~~~l~v~r~l~G~g  156 (223)
                      ++++++...+.+...+-..+ .++.|.+.|.+-     ||+-++++.++..++.+..++.    .+.....+.-++..+|
T Consensus        21 ~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g   99 (433)
T PF03092_consen   21 GLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFG   99 (433)
T ss_pred             CCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence            57899988887777765543 577899999973     4455555666665555544443    2445555555666666


Q ss_pred             hhhhhhhhh--hcccccc---cccccccchhhhcccCccchhhh
Q 027462          157 IGFTNQCRY--ISQKWHH---QNTEEHSPLASKYVLPLVSYPLI  195 (223)
Q Consensus       157 ~g~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  195 (223)
                      ......+.=  ..+..++   .|+..++.......+|.+++..+
T Consensus       100 ~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l  143 (433)
T PF03092_consen  100 YAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLL  143 (433)
T ss_pred             HHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            666555421  2222222   14555666666666676665443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK03612 spermidine synthase; Provisional

Probab=83.92  E-value=20  Score=33.84  Aligned_cols=113  Identities=12%  Similarity=0.052  Sum_probs=56.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHH---H-HHH---hhhhhH-HHHHHHHHHHhhhhhh
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAG---S-AIG---GAALNI-YMLIFGRVLLGVGIGF  159 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~---~-l~~---~~a~~~-~~l~v~r~l~G~g~g~  159 (223)
                      +....+.+.+.+..|..+|..+.+++.++.-++...+- ..+..++   . ++.   ++.... ..++...++.++..|.
T Consensus        48 s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e-~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~  126 (521)
T PRK03612         48 SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVE-LLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGM  126 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888899999999999998887754433322211 1111111   1 111   111111 1122334455677777


Q ss_pred             hhhhhh-hcccc-----cccccccccchhhhcccCccchhhhhhhccC
Q 027462          160 TNQCRY-ISQKW-----HHQNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       160 ~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      ..|... +..+.     .+.-++.++.=..+..+|+++.+.+...++.
T Consensus       127 ~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG  174 (521)
T PRK03612        127 EIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLG  174 (521)
T ss_pred             HHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcc
Confidence            766533 22222     1223455555555555666655555544444

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=83.83  E-value=8  Score=35.30  Aligned_cols=70  Identities=6%  Similarity=-0.092  Sum_probs=40.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHhhhhhhhhh
Q 027462           89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG------AALNIYMLIFGRVLLGVGIGFTNQ  162 (223)
Q Consensus        89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~------~a~~~~~l~v~r~l~G~g~g~~~~  162 (223)
                      ..+..+....+.+|-+++.--...+  |+  |+..+...+ ..+-.++..      +-++.+.+++.-+..|+..|..+.
T Consensus       280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~L-Q~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLL-QVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            4566777888888877776433322  33  333333332 222222211      235667777778888988888887


Q ss_pred             h
Q 027462          163 C  163 (223)
Q Consensus       163 ~  163 (223)
                      -
T Consensus       355 N  355 (402)
T PF02487_consen  355 N  355 (402)
T ss_pred             H
Confidence            6

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=83.79  E-value=23  Score=33.81  Aligned_cols=53  Identities=17%  Similarity=0.096  Sum_probs=41.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHHHHHHHHHHHhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-GRKASILVGGTAFLAGSAIGGA  139 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l~~~~~~l~~~~  139 (223)
                      .+.....-..+.+.-.....++++++++|.| ||-+++.++.++...+..+..+
T Consensus        70 ~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~  123 (571)
T KOG1237|consen   70 ASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTL  123 (571)
T ss_pred             cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666677777777888889999999996 8889999999998888655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.78
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.58
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.51
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.38
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.29
2xut_A	524	Proton/peptide symporter family protein; transport	99.19
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.55
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.53
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.42
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.22
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.21
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.09
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.91
2xut_A	524	Proton/peptide symporter family protein; transport	96.7

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.78  E-value=1.1e-18  Score=156.66  Aligned_cols=147  Identities=21%  Similarity=0.370  Sum_probs=121.3

Q ss_pred             chHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHH
Q 027462           29 MTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASL  108 (223)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~  108 (223)
                      .++..+.++++++++.+++|||.++++..  +|.+.++|....          +...+.++++.+++.+++.+|.+++++
T Consensus         6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~----------~~~~~~~~~~~g~~~s~~~~G~~iG~~   73 (491)
T 4gc0_A            6 NSSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGGA   73 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGG----------CCCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             ChHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC----------CCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777788889999999999998865  478877775321          111123567889999999999999999


Q ss_pred             hHHhHHhhhchhHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHhhhhhhhhhhhhhcccc
Q 027462          109 FASTVTRAFGRKASILVGGTAFLAGSAIGG------------------AALNIYMLIFGRVLLGVGIGFTNQCRYISQKW  170 (223)
Q Consensus       109 ~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~------------------~a~~~~~l~v~r~l~G~g~g~~~~~~~~~~~~  170 (223)
                      +.|+++||+|||++++++.+++.++.++++                  +++++.+++++|+++|+|.|...+.       
T Consensus        74 ~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~-------  146 (491)
T 4gc0_A           74 LGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASML-------  146 (491)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------
Confidence            999999999999999999999999999888                  4789999999999999999999998       


Q ss_pred             cccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhh
Q 027462          171 HHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQ  215 (223)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~  215 (223)
                                           .+.+++|+.|++.|++..+..+..
T Consensus       147 ---------------------~~~~i~E~~p~~~rg~~~~~~~~~  170 (491)
T 4gc0_A          147 ---------------------SPMYIAELAPAHIRGKLVSFNQFA  170 (491)
T ss_dssp             ---------------------HHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHhhCCHHhhhhhHHhhhhh
Confidence                                 788888888888888777654333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.58  E-value=3.8e-15  Score=131.25  Aligned_cols=137  Identities=12%  Similarity=0.182  Sum_probs=104.9

Q ss_pred             HHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc
Q 027462           39 VAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFG  118 (223)
Q Consensus        39 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G  118 (223)
                      .++...+..+++....++.  +|.+.++++                  +++.+.+++.+.+.++..++.++.|++.||+|
T Consensus        30 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g------------------~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g   89 (438)
T 3o7q_A           30 LLCSLFFLWAVANNLNDIL--LPQFQQAFT------------------LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS   89 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HHHHHHHSC------------------CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhHHHH--HHHHHHHcC------------------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            3444556667776666544  377777774                  69999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccch
Q 027462          119 RKASILVGGTAFLAGSAIG---GAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSY  192 (223)
Q Consensus       119 rk~~~~~~~l~~~~~~l~~---~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~  192 (223)
                      ||++++++.++..++.++.   +++++++.+++.|++.|++.+...+...  .++.+++ +|+++.+..+....+|.+++
T Consensus        90 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  169 (438)
T 3o7q_A           90 YKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIA  169 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988   7889999999999999999999888732  3333332 24445555555555555544


Q ss_pred             hhh
Q 027462          193 PLI  195 (223)
Q Consensus       193 ~~~  195 (223)
                      |.+
T Consensus       170 ~~~  172 (438)
T 3o7q_A          170 VVF  172 (438)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.51  E-value=1.7e-14  Score=127.34  Aligned_cols=147  Identities=12%  Similarity=-0.028  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHH
Q 027462           32 FVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFAS  111 (223)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g  111 (223)
                      ..+.......++.+..+++...+++..  |.+.++                  + .++.+.+++.+.+.++..++.++.|
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------------~-~s~~~~g~~~~~~~~~~~~~~~~~G   83 (451)
T 1pw4_A           25 LRWQIFLGIFFGYAAYYLVRKNFALAM--PYLVEQ------------------G-FSRGDLGFALSGISIAYGFSKFIMG   83 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHH--HHTTSS------------------T-TCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH------------------h-ccHhHHHHHHHHHHHHHHHHHHhHH
Confidence            334455556666677777766654332  333322                  2 4888999999999999999999999


Q ss_pred             hHHhhhchhHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhh
Q 027462          112 TVTRAFGRKASILVGGTAFLAGSAIGGA----ALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASK  184 (223)
Q Consensus       112 ~l~dr~Grk~~~~~~~l~~~~~~l~~~~----a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~  184 (223)
                      ++.||+|||++++++.++..++.+++++    +++++.+++.|++.|++.+...+...  +++.+++ +|+++++.....
T Consensus        84 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  163 (451)
T 1pw4_A           84 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA  163 (451)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHH
Confidence            9999999999999999999999999999    88999999999999999998777653  6666654 499999999999


Q ss_pred             cccCccchhhhhhhc
Q 027462          185 YVLPLVSYPLIFSIT  199 (223)
Q Consensus       185 ~~~~~~~~~~~~~~~  199 (223)
                      ..+|.+++|.+..-+
T Consensus       164 ~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          164 HNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988876543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.38  E-value=7.4e-13  Score=114.69  Aligned_cols=151  Identities=15%  Similarity=0.194  Sum_probs=121.9

Q ss_pred             HhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh
Q 027462           41 ATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK  120 (223)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk  120 (223)
                      ++..+..+++...+.+.  +|.+.++++                  .++++.+++.+...++..++.++.|++.||+|||
T Consensus         6 ~~~~~~~~~~~~~~~~~--~~~~~~~~g------------------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r   65 (375)
T 2gfp_A            6 VLLVAVGQMAQTIYIPA--IADMARDLN------------------VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR   65 (375)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHHHTTSS------------------STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHhhh--hHHHHHHcC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            34445555666555433  366666553                  6899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccc-ccccccccchhhhcccCccchhhhhh
Q 027462          121 ASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFS  197 (223)
Q Consensus       121 ~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (223)
                      +++.++.++..++.++.+++++++.+++.|++.|++.+...+...  .++.++ ++|+++++..+....+|.+++|.+..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  145 (375)
T 2gfp_A           66 PVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG  145 (375)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            999999999999999999999999999999999999998777643  555554 46999999999999999999988766


Q ss_pred             hccCCCCCcccccchhhhhhhhh
Q 027462          198 ITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       198 ~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      -+..         ..+||+.+.+
T Consensus       146 ~l~~---------~~~~~~~~~~  159 (375)
T 2gfp_A          146 LLDT---------MWNWRACYLF  159 (375)
T ss_dssp             HSSC---------HHHHHHHHHH
T ss_pred             HHHH---------hccHHHHHHH
Confidence            5543         2468877654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.29  E-value=1.4e-11  Score=110.27  Aligned_cols=127  Identities=13%  Similarity=0.178  Sum_probs=104.6

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHhHHhHHhh-hchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462           85 CKFDSQLLAAFTSSLYISGLIASLFASTVTRA-FGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC  163 (223)
Q Consensus        85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr-~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~  163 (223)
                      ++++..+.+++.+.+.++..+++++.|++.|| +|||+++.++.++..++.++++++++++.+++.|++.|++.+...+.
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  128 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN  128 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence            46799999999999999999999999999999 89999999999999999999999999999999999999999988776


Q ss_pred             hh--hcccccc-c--ccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          164 RY--ISQKWHH-Q--NTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       164 ~~--~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      ..  +++.+++ +  |..+++.......+|.+++|.+..-+..         ..+|+|.+.+
T Consensus       129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~g~~~~f~~  181 (491)
T 4aps_A          129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE---------AAGYHVAFSL  181 (491)
T ss_dssp             HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HSCHHHHHHH
T ss_pred             HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh---------hhhHHHHHHH
Confidence            43  5555532 2  5667777778888888888776554432         2357777654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.19  E-value=9.7e-11  Score=105.80  Aligned_cols=125  Identities=11%  Similarity=0.080  Sum_probs=98.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-GRKASILVGGTAFLAGSAIGGAAL-NIYMLIFGRVLLGVGIGFTNQCR  164 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l~~~~~~l~~~~a~-~~~~l~v~r~l~G~g~g~~~~~~  164 (223)
                      +++.+.+++.+.+.++..++.++.|++.||+ |||+++.++.++..++.++.++++ ++..+++.|++.|++.+...+..
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  130 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV  130 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence            6899999999999999999999999999999 999999999999999999999998 99999999999999999887764


Q ss_pred             h--hccccccc-cccc---ccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462          165 Y--ISQKWHHQ-NTEE---HSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL  220 (223)
Q Consensus       165 ~--~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l  220 (223)
                      .  +++.++++ |+++   ++.......+|.+++|.+..-+..         ..+|++.|.+
T Consensus       131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---------~~g~~~~f~~  183 (524)
T 2xut_A          131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK---------NFGAAVAFGI  183 (524)
T ss_dssp             HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH---------TSCHHHHHHH
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cccHHHHHHH
Confidence            3  55555443 5433   333666777777777764433321         2357766654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.55  E-value=4.5e-08  Score=86.42  Aligned_cols=114  Identities=11%  Similarity=0.046  Sum_probs=73.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHH---HHHhhhhhHH-HHHHHHHHHhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGS---AIGGAALNIY-MLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~---l~~~~a~~~~-~l~v~r~l~G~g~g~~~  161 (223)
                      ++++.+.+++.+...++..+++++.|+++||+|||++++++..+..+..   +...+++... .++..+.+.|++.|...
T Consensus        39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  118 (417)
T 2cfq_A           39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF  118 (417)
T ss_dssp             CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999998887765432   1112222211 23345555555544433


Q ss_pred             hhhh-hcccc----cccccccccchhhhcccCccchhhhhhhc
Q 027462          162 QCRY-ISQKW----HHQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       162 ~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      +... ..+.+    .+++.++++.......+|..++|.+..-.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l  161 (417)
T 2cfq_A          119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIM  161 (417)
T ss_dssp             HTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            2211 11122    22356666667667777777777655444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.53  E-value=5.5e-07  Score=78.74  Aligned_cols=112  Identities=9%  Similarity=-0.002  Sum_probs=81.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY  165 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~  165 (223)
                      +++..+.+++.+...++..++.++.+++.||+|||+.+.++.++..++.++..+.++...++. -++.|++.+...+...
T Consensus       291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~  369 (438)
T 3o7q_A          291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTIF  369 (438)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999988888887777766654443 3777777777766543


Q ss_pred             --hcccccccccccccchhhhcccCccchhhhhhhc
Q 027462          166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                        ..+...+++.++.+... ...+|..++|.+..-+
T Consensus       370 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l  404 (438)
T 3o7q_A          370 SLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFV  404 (438)
T ss_dssp             HHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHH
T ss_pred             HHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHH
Confidence              34444444555555544 2336666666655443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.42  E-value=1.5e-06  Score=76.17  Aligned_cols=115  Identities=10%  Similarity=-0.080  Sum_probs=86.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh--chhHHHHHHHHHHH-HHHHHHhhh--hhHHHHHHHHHHHhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAF--GRKASILVGGTAFL-AGSAIGGAA--LNIYMLIFGRVLLGVGIGFT  160 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~--Grk~~~~~~~l~~~-~~~l~~~~a--~~~~~l~v~r~l~G~g~g~~  160 (223)
                      ++++.+.+++.+...++..++.++.|++.||+  |||+.+.++.++.. ++.++..+.  .+...+++..++.|++.+..
T Consensus       284 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  363 (451)
T 1pw4_A          284 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP  363 (451)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhch
Confidence            57899999999999999999999999999999  99999888877766 666666655  35666777778888887776


Q ss_pred             hhhhh--hccccccc-ccccccchhhhccc-Cccchhhhhhhcc
Q 027462          161 NQCRY--ISQKWHHQ-NTEEHSPLASKYVL-PLVSYPLIFSITA  200 (223)
Q Consensus       161 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~  200 (223)
                      .+...  ..+..+++ |+++++.......+ |..++|.+..-+.
T Consensus       364 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~  407 (451)
T 1pw4_A          364 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  407 (451)
T ss_dssp             HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66522  44555544 77777777777777 7777776554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.22  E-value=6.6e-06  Score=72.40  Aligned_cols=111  Identities=13%  Similarity=0.116  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh--hh
Q 027462           89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR--YI  166 (223)
Q Consensus        89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~--~~  166 (223)
                      ....+++.+...++..++.++.+++.||+|||+++..+.++..++.++.++.++...+++..++.+++.+...+..  +.
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777888888889999999999999999999998888888777777777776777777667776655444332  25


Q ss_pred             ccccccc-ccccccc-hhhhcccCccchhhhhhhc
Q 027462          167 SQKWHHQ-NTEEHSP-LASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       167 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~  199 (223)
                      ++.++++ |+++++. ++....+|..++|.+..-+
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l  372 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM  372 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence            5555554 7777776 3666667776676655543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.21  E-value=2.4e-06  Score=76.13  Aligned_cols=112  Identities=10%  Similarity=-0.072  Sum_probs=76.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHH-----HHHHHHHHHHHHHhhhh---------hHHHHHHHHHHH
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASIL-----VGGTAFLAGSAIGGAAL---------NIYMLIFGRVLL  153 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~-----~~~l~~~~~~l~~~~a~---------~~~~l~v~r~l~  153 (223)
                      +....+++.+...++..++.++.+++.||+|||+...     .+.++..++.++.++..         +...+++.-++.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (491)
T 4aps_A          317 SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALV  396 (491)
T ss_dssp             SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHH
T ss_pred             CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Confidence            3355667778888888999999999999999986554     66666666655555532         556677777888


Q ss_pred             hhhhhhhhhhhh--hccccccc-ccccccchhhhcccCccchhhhhhhc
Q 027462          154 GVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       154 G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      |++.+...+...  ..+..+++ |+++.+.......+|..++|.+..-.
T Consensus       397 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~  445 (491)
T 4aps_A          397 ILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLY  445 (491)
T ss_dssp             HHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887666532  44455443 77777777777777777776654433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.09  E-value=1e-05  Score=71.87  Aligned_cols=96  Identities=18%  Similarity=0.197  Sum_probs=64.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHH-HHHHHHHhhhhhhhh
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----LNIYML-IFGRVLLGVGIGFTN  161 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----~~~~~l-~v~r~l~G~g~g~~~  161 (223)
                      +............+...++.++.+++.||+|||+.++.+.....++.+..+..     ++...+ .+.-+..+++.+. .
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  388 (491)
T 4gc0_A          310 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW-G  388 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT-T
T ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH-H
Confidence            55666666777778889999999999999999999998888887776655433     111111 1222222222222 2


Q ss_pred             hhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccch
Q 027462          162 QCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGES  212 (223)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~  212 (223)
                      +.                            ...+.+|.+|.+.|+.++++.
T Consensus       389 ~~----------------------------~~~~~~E~fPt~~R~~~~g~~  411 (491)
T 4gc0_A          389 PV----------------------------CWVLLSEIFPNAIRGKALAIA  411 (491)
T ss_dssp             HH----------------------------HHHHHHHSSCTTTHHHHHHHH
T ss_pred             HH----------------------------HHHHHHHhCCHhHHHHHHHHH
Confidence            33                            456888999999998888764

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.91  E-value=7.6e-06  Score=70.23  Aligned_cols=111  Identities=12%  Similarity=0.100  Sum_probs=74.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHH-HHHHHH--HHhh--hhhHHHHHHHHHHHhhhhhhhh
Q 027462           87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTA-FLAGSA--IGGA--ALNIYMLIFGRVLLGVGIGFTN  161 (223)
Q Consensus        87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~-~~~~~l--~~~~--a~~~~~l~v~r~l~G~g~g~~~  161 (223)
                      .++.+.+++.+...++..++.++.+++.||+|++.  ..+..+ ..++..  ....  .++...+++..++.|++.+...
T Consensus       232 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  309 (375)
T 2gfp_A          232 LSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLF  309 (375)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhh
Confidence            47888999999999999999999999999998732  233333 222222  1122  2355666677888888888776


Q ss_pred             hhhh--hcccccccccccccchhhhcccCccchhhhhhhc
Q 027462          162 QCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSIT  199 (223)
Q Consensus       162 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (223)
                      +...  ..+..+++|+++.+.......+|..++|.+...+
T Consensus       310 ~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l  349 (375)
T 2gfp_A          310 PLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAML  349 (375)
T ss_dssp             STTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred             HHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6543  4444444577777777777777777666644433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=96.70  E-value=0.0019  Score=57.76  Aligned_cols=111  Identities=13%  Similarity=-0.022  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhHH----hhhch----hHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHH
Q 027462           91 LLAAFTSSLYISGLIASLFASTVT----RAFGR----KASILVGGTAFLAGSAIGGAA---------LNIYMLIFGRVLL  153 (223)
Q Consensus        91 ~~~~~~s~~~lg~~~~~~~~g~l~----dr~Gr----k~~~~~~~l~~~~~~l~~~~a---------~~~~~l~v~r~l~  153 (223)
                      ..+++.+...++..++.++.+++.    +|.|+    ++.+.++.++..++.++.++.         .+..++++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            345555655566667777776654    55443    245666777777776666553         2556677778888


Q ss_pred             hhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462          154 GVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP  201 (223)
Q Consensus       154 G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (223)
                      |++.+...+...  ..+..++ +|+++++.......+|..++|.+..-...
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            988887776543  4445544 48888888888888888888877665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.61
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.76
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.49
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.1

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=4.5e-16  Score=134.37  Aligned_cols=148  Identities=13%  Similarity=-0.032  Sum_probs=114.5

Q ss_pred             chHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHH
Q 027462           29 MTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASL  108 (223)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~  108 (223)
                      .++.+|.....+.++.+...++...++.+.  | +++++                  ++++++.+++.+.+.++..++.+
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~--p-~~~~~------------------g~s~~~~g~~~s~~~~~~~~~~~   77 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAM--P-YLVEQ------------------GFSRGDLGFALSGISIAYGFSKF   77 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHH--H-HTTSS------------------TTCSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHh------------------CcCHHHHHHHHHHHHHHHHHHHH
Confidence            334445555556666666666665554332  3 22333                  47999999999999999999999


Q ss_pred             hHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHhhhhhhhhhhhh--hccccccc-ccccccch
Q 027462          109 FASTVTRAFGRKASILVGGTAFLAGSAIGGAAL----NIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPL  181 (223)
Q Consensus       109 ~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~----~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~  181 (223)
                      +.|++.||+|||+++.++.++..++.+++++++    ++..+++.|++.|++.|...+...  ..+.++++ |+++++..
T Consensus        78 ~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  157 (447)
T d1pw4a_          78 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVW  157 (447)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHH
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccccccc
Confidence            999999999999999999999999988887764    567899999999999888777543  56666544 88999999


Q ss_pred             hhhcccCccchhhhhh
Q 027462          182 ASKYVLPLVSYPLIFS  197 (223)
Q Consensus       182 ~~~~~~~~~~~~~~~~  197 (223)
                      +..+.+|.+++|.+..
T Consensus       158 ~~~~~~g~~i~~~~~~  173 (447)
T d1pw4a_         158 NCAHNVGGGIPPLLFL  173 (447)
T ss_dssp             HHHHHHHHTSHHHHHH
T ss_pred             ccccchhhhhhhhhhh
Confidence            9999888888876544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=8e-09  Score=85.68  Aligned_cols=112  Identities=13%  Similarity=0.034  Sum_probs=76.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHhhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYML----IFGRVLLGVGIGFTN  161 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l----~v~r~l~G~g~g~~~  161 (223)
                      ++++++.+++.+...++..+++++.|+++||+|||++++++..+..++.+...+..+....    ++.+.+.+.+.+...
T Consensus        39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (417)
T d1pv7a_          39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF  118 (417)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccc
Confidence            3799999999999999999999999999999999999999999888888877776555443    344444444443333


Q ss_pred             hhhh--hcc---cccccccccccchhhhcccCccchhhhhh
Q 027462          162 QCRY--ISQ---KWHHQNTEEHSPLASKYVLPLVSYPLIFS  197 (223)
Q Consensus       162 ~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (223)
                      ....  ...   .-.+++.+..+.......++..++|.+..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T d1pv7a_         119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             TTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhcccccccchhhhhHHHHHHHhhhhcccccccccccc
Confidence            3221  111   11223555666666666666666665443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=1.1e-07  Score=78.58  Aligned_cols=109  Identities=12%  Similarity=0.109  Sum_probs=83.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--
Q 027462           88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--  165 (223)
Q Consensus        88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--  165 (223)
                      +....+...+...++..++..+.+++.||+|+|+.+.++.++..++.+...+.++...+++..++.|++.+...+...  
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  336 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            566777788888899999999999999999999999999999999999999999999999999999999888777632  


Q ss_pred             hccccccc-ccccccch-hhhcccCccchhhhh
Q 027462          166 ISQKWHHQ-NTEEHSPL-ASKYVLPLVSYPLIF  196 (223)
Q Consensus       166 ~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~  196 (223)
                      ..+..+++ |.++++.. +....+|..++|.+.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~  369 (417)
T d1pv7a_         337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             HHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444333 55555543 334445555555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=6.2e-06  Score=69.46  Aligned_cols=111  Identities=11%  Similarity=-0.118  Sum_probs=68.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHH---HHHHHhh--hhhHHHHHHHHHHHhhhhhhh
Q 027462           86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLA---GSAIGGA--ALNIYMLIFGRVLLGVGIGFT  160 (223)
Q Consensus        86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~---~~l~~~~--a~~~~~l~v~r~l~G~g~g~~  160 (223)
                      +.+..+.++..+...++..++.++.|++.||++||.......+...+   +.++...  ..+....++.-++.|++.+..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  360 (447)
T d1pw4a_         281 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP  360 (447)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred             ccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999987544333333222   2222222  245566666677778777666


Q ss_pred             hhhhh--hccccccc-ccccccchhhhccc-Cccchhhhh
Q 027462          161 NQCRY--ISQKWHHQ-NTEEHSPLASKYVL-PLVSYPLIF  196 (223)
Q Consensus       161 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~  196 (223)
                      .+...  ..+..+++ |+++.++.+....+ |.+++|.+.
T Consensus       361 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~  400 (447)
T d1pw4a_         361 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  400 (447)
T ss_dssp             HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66522  33444333 56666655544333 344444433