Citrus Sinensis ID: 027464

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTEDVVCVFPLKLQNNNPISIMFIMIYLSGFVEVRLGVLGN
Secondary Structure (PSIPRED)
ccccEEEEcccccccccccEEEEEccccccccccccEEEEcccHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccccEEEEccccccccccccEEEEEccccEEEccccccccEEEcccccccHHHHHccHHHHHHHHccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccHEHHHHHEEHccEEEEEEEEccc
Coil and Loop (DISEMBL)
MVGALSVVgssvmdshagpclcldalptsvkgggelvlrrnssvkrKKVKVAARSLElgssfvdswddwrlSSKVISNMVnrssrkrkqrrdrrpvivnevggqyedSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVatnkpgdgkhFIRILGKVVSETFVLFLFLNIkrnastedvvcvfplklqnnnpiSIMFIMIYLSGFVEVRLGVLGN
Flexible Loop (DISEMBL)
MVGALSVVGSSVMDSHAGPCLCLDAlptsvkgggelvlrrnssvkrkkvkvaarslelgssfvdswddwrlsskvisnmvnrssrkrkqrrdrrpvivnevggqyedsfedVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTEDVVCVFPLKLQNNNPISIMFIMIYLSGFVEVRLGVLGN
Low Complexity Region (SEG)
MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELvlrrnssvkrkkvkvaarslELGSSFVDSWDDWRLSSKVISNMVNrssrkrkqrrdrrPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTEDVVCVFPLKLQNNNPISIMFIMIYLSGFVEVRLGVLGN
Disordered region (IsUnstruct)
**************SHAGPCLCLDALPTSVKGGGELVLRR********VKVAARSLELGSSFVDSWDDWRLSSKVI*******************VIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTEDVVCVFPLKLQNNNPISIMFIMIYLSGFVEVRLGVL**
Disordered Region (DISOPRED)
***A***VGSSVMDSHAGPCLCLDALPTSVKGGGELVL**********************SFVDSWDDWRLSSKV*************************VGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTEDVVCVFPLKLQNNNPISIMFIMIYLSGFVEVRLGVLG*
Disordered Region (DISEMBL)
MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNM*************RRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTEDVVCVFPLKLQNNNPISIMFIMIYLSGFVEVRLGVLGN
Disordered Region (DISPRO)
*VGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNMVNRSS******RDRRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTEDVVCVFPLKLQNNNPISIMFIMIYLSGFVEVRLGVLGN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTEDVVCVFPLKLQNNNPISIMFIMIYLSGFVEVRLGVLGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
224055015	221	predicted protein [Populus trichocarpa]	0.717	0.723	0.706	6e-59
224106179	220	predicted protein [Populus trichocarpa]	0.695	0.704	0.712	2e-57
225435439	226	PREDICTED: uncharacterized protein LOC10	0.735	0.725	0.645	6e-55
351727180	220	uncharacterized protein LOC100526969 [Gl	0.713	0.722	0.619	4e-52
359806917	225	uncharacterized protein LOC100786585 [Gl	0.713	0.706	0.602	1e-50
449442529	222	PREDICTED: uncharacterized protein LOC10	0.704	0.707	0.586	4e-47
225450121	226	PREDICTED: uncharacterized protein LOC10	0.739	0.730	0.567	1e-46
357460393	223	hypothetical protein MTR_3g061630 [Medic	0.717	0.717	0.554	1e-45
388520129	222	unknown [Lotus japonicus]	0.713	0.716	0.572	2e-45
449448719	213	PREDICTED: uncharacterized protein LOC10	0.695	0.727	0.592	8e-43

>gi|224055015|ref|XP_002298402.1| predicted protein [Populus trichocarpa] gi|222845660|gb|EEE83207.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 118/167 (70%), Positives = 137/167 (82%), Gaps = 7/167 (4%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VKGGGELVLRRNSSVKRKKVKVAARSLE 57
           MVGALSV+GSSV+D H  PCLCLD+LPT+   +K  G+L L+R SS+KRK++     SLE
Sbjct: 1   MVGALSVMGSSVVDPHTSPCLCLDSLPTTNIGLKNSGDLALQR-SSIKRKQLTRPG-SLE 58

Query: 58  LGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQ 117
           LGSSFVDSW DWRLSSK IS +V++SSRK  QR+DR  VIV+E+ GQYEDSFEDVK Q+ 
Sbjct: 59  LGSSFVDSWHDWRLSSKAISGIVSKSSRK--QRKDRGLVIVSELAGQYEDSFEDVKTQLL 116

Query: 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK 164
           NYFTYKAVRTVL+QLYEMNPTQY WFYNFVA NKPGDGK F+R L K
Sbjct: 117 NYFTYKAVRTVLNQLYEMNPTQYTWFYNFVAHNKPGDGKRFLRALVK 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106179|ref|XP_002314074.1| predicted protein [Populus trichocarpa] gi|222850482|gb|EEE88029.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/167 (71%), Positives = 134/167 (80%), Gaps = 12/167 (7%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VKGGGELVLRRNSSVKRKKVKVAARSLE 57
           MVGALSVV     D H  PCLCLDALPT+   +K  G+LVL+R SS+KRK++     SLE
Sbjct: 1   MVGALSVV-----DPHTSPCLCLDALPTTNIGLKSSGDLVLQR-SSMKRKQLTRPG-SLE 53

Query: 58  LGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQ 117
           LGSSFVDSW DWRLSSK IS +V++SSRK  QR+DR  V+VNE+GGQYEDSFEDVK Q+ 
Sbjct: 54  LGSSFVDSWHDWRLSSKAISGIVSKSSRK--QRKDRGLVVVNELGGQYEDSFEDVKMQLI 111

Query: 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK 164
           NYFTYKAVRTVL+QLYEMNPTQY W YNFVA NKPGDGK FIR LGK
Sbjct: 112 NYFTYKAVRTVLNQLYEMNPTQYTWLYNFVAQNKPGDGKRFIRSLGK 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435439|ref|XP_002285429.1| PREDICTED: uncharacterized protein LOC100246804 [Vitis vinifera]

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 111/172 (64%), Positives = 135/172 (78%), Gaps = 8/172 (4%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VK-GGGELVLRRNSSVKRKKVKVAARSL 56
           M GALSVVGSS+ D    PCLCLDALP+S   VK GGG+LV +RNS  K++  +    ++
Sbjct: 1   MSGALSVVGSSIFDPKTCPCLCLDALPSSNMSVKAGGGDLVWQRNSVGKKRLSRPG--TV 58

Query: 57  ELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQI 116
           E+GSSFVDSW +WRL +KV+S++VN+SSR+  Q + RR ++V+EV GQYEDSFEDVK QI
Sbjct: 59  EMGSSFVDSWHEWRLEAKVLSSIVNKSSRR--QHKARRLLVVSEVAGQYEDSFEDVKTQI 116

Query: 117 QNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSE 168
            NYFTYKAVRTV+HQLYEMNPTQY W Y+FVA NKPG+GK FIRIL K   E
Sbjct: 117 LNYFTYKAVRTVMHQLYEMNPTQYRWLYDFVAANKPGEGKRFIRILVKEKQE 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727180|ref|NP_001236640.1| uncharacterized protein LOC100526969 [Glycine max] gi|255631274|gb|ACU16004.1| unknown [Glycine max]

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/171 (61%), Positives = 127/171 (74%), Gaps = 12/171 (7%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VKGGGELVLRRNSSVKRKKVKVAARSLE 57
           MVGALSVVGSSVMDSH GPCLC+DALPT+   +K GG+++ +     KR  VK    +++
Sbjct: 1   MVGALSVVGSSVMDSHTGPCLCVDALPTTSVNLKSGGDVLCKNLMGRKRNLVKHGGGTMK 60

Query: 58  LGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQ 117
           L SSFVD   +WRL        V++S ++  QR+DRR  IVNE+GGQYED+FEDVK Q+ 
Sbjct: 61  LSSSFVDPGREWRL-------FVSKSCKR--QRKDRRVTIVNELGGQYEDTFEDVKAQML 111

Query: 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSE 168
           NYFTYKAVRTVLHQLYEMNP +Y WFYNFVA+NKP DGK FIR LGK   E
Sbjct: 112 NYFTYKAVRTVLHQLYEMNPPKYTWFYNFVASNKPADGKRFIRSLGKEQQE 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806917|ref|NP_001241067.1| uncharacterized protein LOC100786585 [Glycine max] gi|255640127|gb|ACU20354.1| unknown [Glycine max]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/176 (60%), Positives = 128/176 (72%), Gaps = 17/176 (9%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS----VKGGGELVLRRNSSVKR----KKVKVA 52
           MVGALSVVGSSVMDSH GPCLC+DALPT+    +K GG++VL +N   ++    K     
Sbjct: 1   MVGALSVVGSSVMDSHTGPCLCVDALPTTTSVNLKSGGDVVLCKNLMGRKHNLVKHGGGG 60

Query: 53  ARSLELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDV 112
             +++L SSFVD   +WRL        V++S ++  QR+DRR  IVNE+GGQYED+FEDV
Sbjct: 61  GTTMKLSSSFVDPGREWRL-------FVSKSCKR--QRKDRRVTIVNELGGQYEDTFEDV 111

Query: 113 KKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSE 168
           K Q+ NYFTYKAVRTVLHQLYEMNP +Y WFYNFVA+NKP DGK FIR LGK   E
Sbjct: 112 KTQMLNYFTYKAVRTVLHQLYEMNPPKYTWFYNFVASNKPADGKRFIRSLGKEQQE 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442529|ref|XP_004139034.1| PREDICTED: uncharacterized protein LOC101213099 [Cucumis sativus] gi|449476061|ref|XP_004154629.1| PREDICTED: uncharacterized LOC101213099 [Cucumis sativus]

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 128/167 (76%), Gaps = 10/167 (5%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VKGGGELVLRRNSSVKRKKVKVAARSLE 57
           MVGALS+VGSSV+DSH+ PCLCLDALPT+   +K  G+ V+++  S  R+++    + L+
Sbjct: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLP-KPKHLD 59

Query: 58  LGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQ 117
           L SSFVD+  +W LS     +M+NRSSRK  Q ++RR ++V+E+GGQYED+F+DVK Q+ 
Sbjct: 60  LSSSFVDNGREWLLSV----DMINRSSRK--QTKNRRLMVVDELGGQYEDNFDDVKMQML 113

Query: 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK 164
           NYFTYKAVRTV++QLYEMNP QY W Y+FV  NKP DGKHFIR L K
Sbjct: 114 NYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVK 160

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450121|ref|XP_002279163.1| PREDICTED: uncharacterized protein LOC100251681 [Vitis vinifera]

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 127/171 (74%), Gaps = 6/171 (3%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VKGGGELVLRRNSSVKRKKVKVAARSLE 57
           MVGA+ +  SS  + ++ P LCLD+L  S   VK  G+  L RN   K++  +    SL+
Sbjct: 1   MVGAILISSSSFPELYSCPYLCLDSLSLSNLNVKSSGDSGLYRNLIAKKQLWRPG--SLD 58

Query: 58  LGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQ 117
           L SSF+D+W +WRLS+K++S++ NR SRK+++  +    IV+E+GGQYED+F DVKKQIQ
Sbjct: 59  LSSSFIDAWYEWRLSTKMLSHIANRCSRKQRKLGNHLS-IVDELGGQYEDTFNDVKKQIQ 117

Query: 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSE 168
           NYFT+KAVRTVL+QLYEMNPT+Y WFYNFVA NKPGDGKHFI+ LGK   E
Sbjct: 118 NYFTFKAVRTVLNQLYEMNPTEYTWFYNFVAANKPGDGKHFIQTLGKEKQE 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460393|ref|XP_003600478.1| hypothetical protein MTR_3g061630 [Medicago truncatula] gi|355489526|gb|AES70729.1| hypothetical protein MTR_3g061630 [Medicago truncatula]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 123/173 (71%), Gaps = 13/173 (7%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTSVK----GGGELVLRRNSSVKRK-KVKVAARS 55
           MVGA+SV+GSS+MDSH GPCLC+DALPT+      G G++VL +N   K+  + +   R+
Sbjct: 1   MVGAISVIGSSMMDSHTGPCLCVDALPTTNMNLKIGCGDVVLWKNLMGKKHLEKRGGGRT 60

Query: 56  LELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQ 115
           + L SSF D   +WR+         +RS +K++   DRR  IV+E+GGQYED+FEDVK Q
Sbjct: 61  MGLSSSFTDPGREWRVK-------FSRSCKKQRSE-DRRVTIVSELGGQYEDTFEDVKTQ 112

Query: 116 IQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSE 168
           + NYFTYKAVRTV+ QLYEMNP +Y WFYNFV +NKP DGK FIR+LGK   E
Sbjct: 113 MLNYFTYKAVRTVMQQLYEMNPPKYTWFYNFVVSNKPQDGKRFIRLLGKEQQE 165

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520129|gb|AFK48126.1| unknown [Lotus japonicus]

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/173 (57%), Positives = 124/173 (71%), Gaps = 14/173 (8%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VKGGGELVLRRNSSVKRKKVKVAA--RS 55
           MVGALSVVGSSVMDSH GPCLC+DALPT+   +K GG++ L ++   K+  ++     ++
Sbjct: 1   MVGALSVVGSSVMDSHTGPCLCVDALPTTNVNLKSGGDVALCKSLMGKKHFLRSGGNGKT 60

Query: 56  LELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQ 115
           +EL SSF     +WRLS       V+R+ +K  QRRDR+  IVNE+GGQYE+ F+DVK Q
Sbjct: 61  MELSSSFTGPGWEWRLS-------VSRNCKK--QRRDRKMGIVNELGGQYEEGFDDVKTQ 111

Query: 116 IQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSE 168
           + NYFT KAVRTVL QLYEMNP +Y WFYNFV +NKP DGK F+R LGK   E
Sbjct: 112 MLNYFTVKAVRTVLQQLYEMNPPKYTWFYNFVVSNKPTDGKRFLRSLGKEQRE 164

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448719|ref|XP_004142113.1| PREDICTED: uncharacterized protein LOC101203881 [Cucumis sativus]

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 99/167 (59%), Positives = 121/167 (72%), Gaps = 12/167 (7%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPT---SVKGGGELVLRRNSSVKRKKVKVAARSLE 57
           MVGAL VVG+ V+DS   PCL  D+ P    S++ GG+LVL+R S  K K     ++S++
Sbjct: 1   MVGALFVVGAPVVDS-LPPCLSFDSSPVTNMSLRSGGDLVLQRKS--KAKSYLTVSKSVD 57

Query: 58  LGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQ 117
           L SSFV+  D+W+LS+        R S KR QRR+RR V+VNE  GQYEDSF+DVK QIQ
Sbjct: 58  LRSSFVNLGDEWQLSAGG-----GRQS-KRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQ 111

Query: 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK 164
           NYFTYKAV+TVL+QLYEMNPTQY WFYNFV  +KPG+GK FIR L K
Sbjct: 112 NYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVK 158

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:505006621	203	RbcX2 "AT5G19855" [Arabidopsis	0.466	0.512	0.575	9.4e-27

TAIR|locus:505006621 RbcX2 "AT5G19855" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 65/113 (57%), Positives = 75/113 (66%)

Query:    57 ELGSSFVDSWDDWRLSSKVISNMVNXXXXXXXXXXXXXPVIVNE-VGGQYEDSFEDVKKQ 115
             ELGSSF  S   +RLS K +S + N              +IVNE V G Y+D+F DV+KQ
Sbjct:    44 ELGSSFTGSRIVFRLSPKRVSRIANRKSKKL--------LIVNEDVAGNYDDTFGDVQKQ 95

Query:   116 IQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSE 168
             I NYFTYKAVRTVLHQLYEMNP QY WFYN + TN+P DGK F+R LGK   E
Sbjct:    96 IVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQE 148


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      223       190   0.00091  110 3  11 22  0.42    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  166 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.13u 0.07s 15.20t   Elapsed:  00:00:02
  Total cpu time:  15.13u 0.07s 15.20t   Elapsed:  00:00:02
  Start:  Fri May 10 17:01:23 2013   End:  Fri May 10 17:01:25 2013

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0044183 "protein binding involved in protein folding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.I.1529.1	hypothetical protein (221 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0089000701	hypothetical protein (311 aa)			•	•					0.510
	gw1.XIII.1619.1	hypothetical protein (398 aa)			•						0.506
	gw1.IV.3493.1	hypothetical protein (374 aa)			•						0.506
	eugene3.00181050	hypothetical protein (120 aa)			•						0.506
	eugene3.00090150	hypothetical protein (129 aa)			•						0.506
	estExt_fgenesh4_pg.C_LG_II2395	SubName- Full=Putative uncharacterized protein; (210 aa)			•						0.506
	estExt_Genewise1_v1.C_LG_XIV3823	hypothetical protein (206 aa)			•						0.506
	estExt_Genewise1_v1.C_LG_XIV2304	hypothetical protein (126 aa)			•						0.506
	gw1.XIV.2732.1	hypothetical protein (109 aa)			•						0.505
	gw1.VII.1585.1	hypothetical protein (204 aa)			•						0.505

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
pfam02341	111	pfam02341, RcbX, RbcX protein	7e-12

>gnl|CDD|202210 pfam02341, RcbX, RbcX protein

 Score = 59.7 bits (145), Expect = 7e-12
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 111 DVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRIL 162
           D  K +Q+Y TY+AVRTVL QL E NP   +W + F A+ K  DG+ ++  L
Sbjct: 9   DTAKVLQSYLTYQAVRTVLDQLSETNPPLAIWLHQFSASGKIQDGEAYLEEL 60

The RBCX protein has been identified as having a possible chaperone-like function. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RuBisCO in Anabaena sp. CA. RbcX has been shown to possess a chaperone-like function assisting correct folding of RuBisCO in E. coli expression studies and is needed for RuBisCO to reach its maximal activity. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
PF02341	111	RcbX: RbcX protein; InterPro: IPR003435 The RbcX p	100.0
cd00131	128	PAX Paired Box domain	83.18
smart00351	125	PAX Paired Box domain.	81.23

>PF02341 RcbX: RbcX protein; InterPro: IPR003435 The RbcX protein has been identified as having a possible chaperonin-like function []

Probab=100.00  E-value=1.4e-40  Score=264.37  Aligned_cols=85  Identities=40%  Similarity=0.718  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccchhhhhhhhhhhhhhhhhhhhhhh
Q 027464          110 EDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTEDVVC  189 (223)
Q Consensus       110 ~DtAk~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~qeLA~RIM~ltVvRea~Aeev~e  189 (223)
                      +||||+|+||||||||||||+||+|||||+|.||+||+++|||||||+||++|++|+|+||+|||  +| |+|||++++|
T Consensus         8 kdtak~L~~yfTy~Avr~Vl~QL~etnp~~~~wL~~F~~~~~~~DGd~fl~~L~~e~~~LA~RIM--~v-R~~la~~~~d   84 (111)
T PF02341_consen    8 KDTAKVLQSYFTYQAVRTVLAQLYETNPPAYIWLYNFLSRNPLQDGDAFLEALMRENQELALRIM--EV-REHLAEEVFD   84 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHSTCSSHHHHHHHHHCC-HHHHHHHH--HH-HHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccHHHHHHHHHHHCHHHHHHHH--HH-HHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999998  97 9999999999


Q ss_pred             chhhhhhc
Q 027464          190 VFPLKLQN  197 (223)
Q Consensus       190 flPe~~~~  197 (223)
                      |+|||+..
T Consensus        85 ~l~em~~~   92 (111)
T PF02341_consen   85 FLPEMVRE   92 (111)
T ss_dssp             GHHHHHHH
T ss_pred             HhHHHHHH
Confidence            99999764

The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RubisCO in Anabaena sp. (strain CA / ATCC 33047). RbcX has been shown to possess a chaperonin-like function assisting correct folding of RubisCO in Escherichia coli expression studies and is needed for RubisCO to reach its maximal activity [].; PDB: 2PEM_B 2PEI_L 2PEK_A 2Z46_E 2Z44_A 2PEJ_F 2PEN_D 2PEQ_B 2Z45_A 3Q20_A ....

>cd00131 PAX Paired Box domain

Probab=83.18  E-value=3.6  Score=32.94  Aligned_cols=77  Identities=13%  Similarity=0.041  Sum_probs=55.1

Q ss_pred             eecCCCcccc----chHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCC--------------HHHHH
Q 027464           98 VNEVGGQYED----SFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGD--------------GKHFI  159 (223)
Q Consensus        98 v~~~~G~yEd----~f~DtAk~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qD--------------Ge~FL  159 (223)
                      +|.+||+|.-    +-+.=++++.-|-.=...+.+..++.=.-+..+.|+..|-.++.+..              -+.||
T Consensus         5 ~~~~~~~~~m~~~lS~d~R~rIv~~~~~G~s~~~iA~~~~Vs~~tV~r~i~r~~e~G~v~pk~~gg~rpr~~~~~~~~~i   84 (128)
T cd00131           5 VNQLGGVFVNGRPLPDSIRQRIVELAQSGIRPCDISRQLRVSHGCVSKILNRYYETGSIRPGAIGGSKPRVATPEVVKKI   84 (128)
T ss_pred             ccCCCccccCCCcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcCCCCCCCCCCCcCCHHHHHHH
Confidence            5678888843    22455666666655566777788888877899999999997755432              25778


Q ss_pred             HHHhccchhhhhhhh
Q 027464          160 RILGKVVSETFVLFL  174 (223)
Q Consensus       160 ~~L~rE~qeLA~RIM  174 (223)
                      .++.+++|++-.+=|
T Consensus        85 ~~~v~~~p~~Tl~El   99 (128)
T cd00131          85 EIYKQENPGMFAWEI   99 (128)
T ss_pred             HHHHHHCCCCCHHHH
Confidence            888899988766654

>smart00351 PAX Paired Box domain

Probab=81.23  E-value=4.6  Score=32.02  Aligned_cols=76  Identities=13%  Similarity=0.066  Sum_probs=49.3

Q ss_pred             ecCCCccccc----hHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCC----H----------HHHHH
Q 027464           99 NEVGGQYEDS----FEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGD----G----------KHFIR  160 (223)
Q Consensus        99 ~~~~G~yEd~----f~DtAk~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qD----G----------e~FL~  160 (223)
                      |.+||.|--+    -+.=++.+.-|-.=...+.+-.++.=.-+..|.|+..|-.++.+..    |          +.||.
T Consensus         6 ~~~~~~~~~~~~~s~~~R~riv~~~~~G~s~~~iA~~~gvs~~tV~kwi~r~~~~G~~~pk~~gg~rp~~~~~~~~~~I~   85 (125)
T smart00351        6 NQLGGVFVNGRPLPDEERQRIVELAQNGVRPCDISRQLCVSHGCVSKILGRYYETGSIRPGAIGGSKPKVATPKVVKKIA   85 (125)
T ss_pred             ccCCCeecCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcCCcCCCCCCCCccCHHHHHHHH
Confidence            4566655332    1233344444433335666677777777799999999987655544    3          67899


Q ss_pred             HHhccchhhhhhhh
Q 027464          161 ILGKVVSETFVLFL  174 (223)
Q Consensus       161 ~L~rE~qeLA~RIM  174 (223)
                      ++.+++|++-.+=|
T Consensus        86 ~~~~~~p~~t~~el   99 (125)
T smart00351       86 DYKQENPGIFAWEI   99 (125)
T ss_pred             HHHHHCCCCCHHHH
Confidence            99999988766653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
4gr6_A	126	Crystal Structure Of Atrbcx2 From Arabidopsis Thali		2e-24
2peo_A	155	Crystal Structure Of Rbcx From Anabaena Ca Length =		4e-07
3q20_A	126	Crystal Structure Of Rbcx C103a Mutant From Thermos		3e-05
4gr2_A	128	Structure Of Atrbcx1 From Arabidopsis Thaliana. Len		4e-05
2py8_A	147	Rbcx Length = 147		5e-04

>pdb|4GR6|A Chain A, Crystal Structure Of Atrbcx2 From Arabidopsis Thaliana Length = 126

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 56/71 (78%)
Query: 98  VNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKH 157
           + +V G Y+D+F DV+KQI NYFTYKAVRTVLHQLYEMNP QY WFYN + TN+P DGK 
Sbjct: 1   MEDVAGNYDDTFGDVQKQIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKR 60
Query: 158 FIRILGKVVSE 168
           F+R LGK   E
Sbjct: 61  FLRALGKESQE 71

>pdb|2PEO|A Chain A, Crystal Structure Of Rbcx From Anabaena Ca Length = 155

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 110 EDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRIL 162
           +D  K +Q+Y TY+A+RTVL QL E NP   +W +NF A  K  DG+ +I  L
Sbjct: 28  KDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEEL 79

>pdb|3Q20|A Chain A, Crystal Structure Of Rbcx C103a Mutant From Thermosynechococcus Elongatus Length = 126

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRIL 162
           +Y TY+AVRTV+ QL E +P + +W + F +     DG+ ++  L
Sbjct: 16  SYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEAL 60

>pdb|4GR2|A Chain A, Structure Of Atrbcx1 From Arabidopsis Thaliana. Length = 128

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 114 KQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLF 173
           K + ++FTY AVR V  QL   NP  YM    F+ TN   DG  F+  L +  S    L 
Sbjct: 17  KHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFLATLMRRSSRHMNLA 76
Query: 174 L 174
           L
Sbjct: 77  L 77

>pdb|2PY8|A Chain A, Rbcx Length = 147

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 114 KQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLF 173
           K +Q+Y TY+AV  +  +L E NP Q +W   ++A++   +G+ F   L +++ E   L 
Sbjct: 12  KVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETF---LTELLDENKELV 68
Query: 174 LFLNIKRNASTEDVVCVFP 192
           L +   R    E V+   P
Sbjct: 69  LRILAVREDIAESVLDFLP 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
3hyb_A	155	RBCX protein; rubisco, protein complex assembly, c	4e-27
2peq_A	134	ORF134; helix bundle, protein complex assembly, ch	5e-25
2py8_A	147	Hypothetical protein RBCX; all helical fold, chape	1e-24
3ka1_A	126	RBCX protein; chaperone, helix bundle, rubisco ass	6e-24

>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C Length = 155

 Score =  100 bits (250), Expect = 4e-27
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 87  RKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNF 146
                    ++        +   +D  K +Q+Y TY+A+RTVL QL E NP   +W +NF
Sbjct: 5   HHHHHHSSGLVPRGSHMNLKQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNF 64

Query: 147 VATNKPGDGKHFIRILGK 164
            A  K  DG+ +I  L  
Sbjct: 65  SA-GKVQDGEKYIEELFL 81

>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A Length = 134

 Score = 94.7 bits (235), Expect = 5e-25
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 104 QYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILG 163
           +++   ++    +Q+Y TY+AVR +  QL E NP Q +W   F   +   +   ++  + 
Sbjct: 2   EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMM 61

Query: 164 K 164
            
Sbjct: 62  L 62

>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1 Length = 147

 Score = 94.0 bits (233), Expect = 1e-24
 Identities = 19/65 (29%), Positives = 34/65 (52%)

Query: 104 QYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILG 163
           Q +   +   K +Q+Y TY+AV  +  +L E NP Q +W   ++A++   +G+ F+  L 
Sbjct: 2   QTKHIAQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELL 61

Query: 164 KVVSE 168
               E
Sbjct: 62  DENKE 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
3ka1_A	126	RBCX protein; chaperone, helix bundle, rubisco ass	100.0
3hyb_A	155	RBCX protein; rubisco, protein complex assembly, c	100.0
2peq_A	134	ORF134; helix bundle, protein complex assembly, ch	100.0
2py8_A	147	Hypothetical protein RBCX; all helical fold, chape	100.0

>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C

Probab=100.00  E-value=2.7e-40  Score=274.31  Aligned_cols=95  Identities=32%  Similarity=0.476  Sum_probs=89.9

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccchhhhhhhhhhhhhhhhh
Q 027464          104 QYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNAS  183 (223)
Q Consensus       104 ~yEd~f~DtAk~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~qeLA~RIM~ltVvRea~  183 (223)
                      +..+-++||||+|+||||||||||||+||+||||++|.||+||++ |||||||+||++||+|+|+||+|||  +| |+||
T Consensus        22 ~~k~iakDtak~L~~YfTYqAvr~VLaQL~EtNP~~y~wL~~F~s-~~iqDGe~fl~~L~~E~~~LA~RIM--~V-Rehl   97 (155)
T 3hyb_A           22 NLKQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEKPDLALRIM--TV-REHI   97 (155)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TCCSSHHHHHHHHHHHCHHHHHHHH--HH-HHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHc-CCcccHHHHHHHHHhhCHHHHHHHH--HH-HHHH
Confidence            346778999999999999999999999999999999999999999 9999999999999999999999998  97 9999


Q ss_pred             hhhhhhchhhhh----hccCCee
Q 027464          184 TEDVVCVFPLKL----QNNNPIS  202 (223)
Q Consensus       184 Aeev~eflPe~~----~~~n~~~  202 (223)
                      |++|+||+|||+    ++.|.+.
T Consensus        98 ae~v~eflpeMv~~~IqqaN~el  120 (155)
T 3hyb_A           98 AEEIAEFLPEMVVTGIQQANMEK  120 (155)
T ss_dssp             HHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998    7777665

>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A

Probab=100.00  E-value=1.4e-38  Score=258.71  Aligned_cols=102  Identities=22%  Similarity=0.357  Sum_probs=89.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccchhhhhhhhhhhhhhhhhhhh
Q 027464          107 DSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTED  186 (223)
Q Consensus       107 d~f~DtAk~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~qeLA~RIM~ltVvRea~Aee  186 (223)
                      +-++|||++|++||||||||+||+||+|||||+|.||++|+++|||+|||+||++||+|+|+||+|||  +| |+|||++
T Consensus         5 ~~~~daAk~L~~yfTy~AvR~Vl~QL~e~np~~~~wL~~F~~~~~l~DGd~fL~~L~~e~~~LAlRIM--~V-Re~ya~e   81 (134)
T 2peq_A            5 KVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRIL--TV-RENLAEG   81 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCTTSHHHHHHHHHTTCHHHHHHHH--HH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcCCCccHHHHHHHHHhHCHHHHHHHH--HH-HHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999998  97 9999999


Q ss_pred             hhhchhhhh----hccCCee---eeeeeeeec
Q 027464          187 VVCVFPLKL----QNNNPIS---IMFIMIYLS  211 (223)
Q Consensus       187 v~eflPe~~----~~~n~~~---~~~~~~yls  211 (223)
                      ++||+|+|+    ++.|.+.   |+.-++.++
T Consensus        82 ~~e~l~~m~~~~I~~~N~~lmR~~ler~t~~~  113 (134)
T 2peq_A           82 VLEFLPEMVLSQIKQSNGNHRRSLLERLTQVD  113 (134)
T ss_dssp             HGGGHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999975    4556554   444454444

>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1

Probab=100.00  E-value=3.6e-38  Score=259.57  Aligned_cols=89  Identities=27%  Similarity=0.433  Sum_probs=85.1

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccchhhhhhhhhhhhhhhhhhh
Q 027464          106 EDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTE  185 (223)
Q Consensus       106 Ed~f~DtAk~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~qeLA~RIM~ltVvRea~Ae  185 (223)
                      .+.|+|||++|++|||||||||||+||+||||++|.||++|+++|||+|||+||++||+|+|+||+|||  +| |+|||+
T Consensus         4 k~~~kdaAk~L~~yfTy~AvR~VL~QL~EtNP~~y~wL~~Fl~~npl~DGd~fL~~Lmre~~~LAlRIM--eV-R~~ya~   80 (147)
T 2py8_A            4 KHIAQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLRIL--AV-REDIAE   80 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTCHHHHHHHH--HH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCccHHHHHHHHHhhCHHHHHHHH--HH-HHHHHH
Confidence            357899999999999999999999999999999999999999999999999999999999999999998  97 999999


Q ss_pred             hhhhchhhhhhc
Q 027464          186 DVVCVFPLKLQN  197 (223)
Q Consensus       186 ev~eflPe~~~~  197 (223)
                      +++||+|+++..
T Consensus        81 e~fe~l~em~~~   92 (147)
T 2py8_A           81 SVLDFLPGMTRN   92 (147)
T ss_dssp             HHGGGHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d2peqa1	108	a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synech	1e-23
d2py8a1	120	a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synech	6e-23
d2peoa1	115	a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabae	1e-21

>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002 [TaxId: 32049]} Length = 108

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechococcus sp. pcc 7002 [TaxId: 32049]

 Score = 89.0 bits (221), Expect = 1e-23
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 110 EDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK 164
           ++    +Q+Y TY+AVR +  QL E NP Q +W   F   +   +   ++  +  
Sbjct: 7   KETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMML 61

>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]} Length = 120

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechocystis sp., strain PCC 6803 [TaxId: 1143]

 Score = 87.5 bits (217), Expect = 6e-23
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 111 DVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK 164
              K +Q+Y TY+AV  +  +L E NP Q +W   ++A++   +G+ F+  L  
Sbjct: 8   ATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLD 61

>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]} Length = 115

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Anabaena sp. [TaxId: 1167]

 Score = 83.7 bits (207), Expect = 1e-21
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 109 FEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK 164
            +D  K +Q+Y TY+A+RTVL QL E NP   +W +NF A  K  DG+ +I  L  
Sbjct: 7   AKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d2py8a1	120	RuBisCo chaperone RbcX {Synechocystis sp., strain	100.0
d2peqa1	108	RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002	100.0
d2peoa1	115	RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]	100.0

>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]}

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechocystis sp., strain PCC 6803 [TaxId: 1143]

Probab=100.00  E-value=7.3e-40  Score=260.55  Aligned_cols=85  Identities=28%  Similarity=0.463  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccchhhhhhhhhhhhhhhhhhhhhhh
Q 027464          110 EDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTEDVVC  189 (223)
Q Consensus       110 ~DtAk~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~qeLA~RIM~ltVvRea~Aeev~e  189 (223)
                      +||||+|++||||+|||||++||+|||||.|.||++|+++||++|||+||++||+|+|+||+|||  +| |+||||+|+|
T Consensus         7 k~tak~L~~yfTy~Avr~Vl~QL~etnp~~~~wL~~f~~~~~~~DGd~fl~~L~~e~~~lAlRIm--~v-Re~lAeev~d   83 (120)
T d2py8a1           7 QATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLRIL--AV-REDIAESVLD   83 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTCHHHHHHHH--HH-HHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCCCHHHHHHHHHhhCHHHHHHHH--HH-HHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999998  97 9999999999


Q ss_pred             chhhhhhc
Q 027464          190 VFPLKLQN  197 (223)
Q Consensus       190 flPe~~~~  197 (223)
                      |+|||++.
T Consensus        84 ~l~emv~~   91 (120)
T d2py8a1          84 FLPGMTRN   91 (120)
T ss_dssp             GHHHHHHH
T ss_pred             HhHHHHHH
Confidence            99999875

>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002 [TaxId: 32049]}

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechococcus sp. pcc 7002 [TaxId: 32049]

Probab=100.00  E-value=9.6e-40  Score=255.59  Aligned_cols=86  Identities=24%  Similarity=0.417  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccchhhhhhhhhhhhhhhhhhhhhhh
Q 027464          110 EDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTEDVVC  189 (223)
Q Consensus       110 ~DtAk~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~qeLA~RIM~ltVvRea~Aeev~e  189 (223)
                      +|||++|++||||+|||||++||+|||||.|.||++|+++||++|||+||++||+|+|+||+|||  +| |+|||++++|
T Consensus         7 kd~ak~L~~yfTy~AvrvVl~Ql~e~np~~~~wL~~F~~~~~~~DGd~~l~~L~~e~~~lA~RIm--~v-R~~ya~e~~e   83 (108)
T d2peqa1           7 KETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRIL--TV-RENLAEGVLE   83 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCTTSHHHHHHHHHTTCHHHHHHHH--HH-HHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcHhHHHHHHHHhcCCCCCHHHHHHHHHhhCHHHHHHHH--HH-HHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999998  97 9999999999


Q ss_pred             chhhhhhcc
Q 027464          190 VFPLKLQNN  198 (223)
Q Consensus       190 flPe~~~~~  198 (223)
                      |+|||+...
T Consensus        84 ~l~em~~~~   92 (108)
T d2peqa1          84 FLPEMVLSQ   92 (108)
T ss_dssp             GHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998653

>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]}

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Anabaena sp. [TaxId: 1167]

Probab=100.00  E-value=1.3e-38  Score=251.46  Aligned_cols=87  Identities=32%  Similarity=0.501  Sum_probs=81.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccchhhhhhhhhhhhhhhhhhhh
Q 027464          107 DSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTED  186 (223)
Q Consensus       107 d~f~DtAk~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~qeLA~RIM~ltVvRea~Aee  186 (223)
                      +.++|||++|++||||+|||+|++||+|||||+|.||++|++ |||+|||+||++||+|+|+||+|||  +| |+|||++
T Consensus         5 ~~~kd~ak~L~~yfTy~AvrvVl~Ql~e~np~~~~wL~~f~~-~~~~DGd~~l~~L~~e~~~lA~RIm--~v-R~~yae~   80 (115)
T d2peoa1           5 QIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEKPDLALRIM--TV-REHIAEE   80 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC-C--CCHHHHHHHHHHHCHHHHHHHH--HH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHc-CCCcCHHHHHHHHHhhCHHHHHHHH--HH-HHHHHHH
Confidence            468999999999999999999999999999999999999996 8999999999999999999999998  97 9999999


Q ss_pred             hhhchhhhhhc
Q 027464          187 VVCVFPLKLQN  197 (223)
Q Consensus       187 v~eflPe~~~~  197 (223)
                      |+||+|||+..
T Consensus        81 ~~e~~~e~~~~   91 (115)
T d2peoa1          81 IAEFLPEMVVT   91 (115)
T ss_dssp             HTTTHHHHHHH
T ss_pred             HHHHhHHHHHH
Confidence            99999998764