Citrus Sinensis ID: 027479

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVGGAPSQRSFRRLVVKAAAVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGGPILFAAFPNTCITNNMM
Secondary Structure (PSIPRED)
ccccEEcccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEccccccEEEEEccccEEEcccEEEEccccccccccEEEEEEcccEEccccEEEEEcccccEEEEEcccccEEEEccEEEEEEEcccEEEEEcccccccccccccEEEEEEEcccccccccEEEcccccccccccEEEEEcccccccEEEEccccccEEEEccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccHHHHccccccccccccccccccccccccccccccEEEEEEEEEEcccHccccccccEEEEEEEEcHccccccEEEcccccccccccEEEEEccccccccccEcEEEccccEEEEEEccccEEEEcccEEEEEEcccEEEEEEcccHHcccccccEEEEEEEEccccccccEEEccccccccccEEEEEEccccccccEEEEEccccEEEEccc
Coil and Loop (DISEMBL)
MATAQLTASsikvparsltsfdglrpssvkfasvggapsqrSFRRLVVKAAAVvapkytsikplgdRVLVKIKTveektdggiflpsaaqtkpqagevvavgegktvgkakldisvkpgtqVIYSKyagtelefnganhlilreddvvgiletdeikdlkplndRVFIKVAEAEETTAGGLLlteaskekpsigmVRVVNFckfggpilfaafpntcitnnmm
Flexible Loop (DISEMBL)
mataqltassikvparsltsfdglrpSSVKFAsvggapsqrsfRRLVVKAAAvvapkytsikplgdrvlVKIKTVeektdggiflpsaaqtkpqageVVAVGegktvgkakldisvkpgtQVIYSKYAGTELEFNGANHLILREDDVVGILEtdeikdlkplndRVFIKVAEaeettagglllteaskekpsiGMVRVVNFCKFGGPilfaafpntcitnnmm
Low Complexity Region (SEG)
MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVGGAPSQRSFRRLvvkaaavvaPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGGPILFAAFPNTCITNNMM
Disordered region (IsUnstruct)
*****************************************SFRRLVVKAAAVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPS********GEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGGPILFAAFPNTCIT****
Disordered Region (DISOPRED)
*************************************************AAAVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGGPILFAAFPNTCITNNMM
Disordered Region (DISEMBL)
**********IKVPARSLTSFDGLRPSSVKFASVGGAPSQRSFRRLVVKAAAVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGGPILFAAFPNTCITNNMM
Disordered Region (DISPRO)
*********SIKVPARSLTSFDGLRPSSVKFASVGGAPSQRSFRRLVVKAAAVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGGPILFAAFPNTCITNN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVGGAPSQRSFRRLVVKAAAVVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGGPILFAAFPNTCITNNMM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
O65282	253	20 kDa chaperonin, chloro	yes	no	0.892	0.786	0.75	7e-79
Q02073	255	20 kDa chaperonin, chloro	N/A	no	0.874	0.764	0.59	2e-61
B2A5V2	95	10 kDa chaperonin OS=Natr	yes	no	0.417	0.978	0.521	5e-22
B0K3P5	94	10 kDa chaperonin OS=Ther	yes	no	0.358	0.851	0.532	7e-22
B0KBR4	94	10 kDa chaperonin OS=Ther	yes	no	0.358	0.851	0.532	7e-22
Q60023	94	10 kDa chaperonin OS=Ther	yes	no	0.358	0.851	0.532	8e-22
A1VCP9	95	10 kDa chaperonin OS=Desu	yes	no	0.417	0.978	0.521	4e-21
Q72AL5	95	10 kDa chaperonin OS=Desu	yes	no	0.417	0.978	0.521	4e-21
B8DJC3	95	10 kDa chaperonin OS=Desu	yes	no	0.417	0.978	0.531	5e-21
Q9XCB0	100	10 kDa chaperonin OS=Rhod	yes	no	0.367	0.82	0.489	5e-21

>sp|O65282|CH10C_ARATH 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2

 Score =  293 bits (750), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 150/200 (75%), Positives = 167/200 (83%), Gaps = 1/200 (0%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAPSQRSFRRLVVKAAAVVAPKYT 59
           MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRLVVKAA+VVAPKYT
Sbjct: 1   MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYT 60

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPG 119
           SIKPLGDRVLVKIK  EEKT GGI LPS AQ+KPQ GEVVAVGEG+T+GK K+DI+V  G
Sbjct: 61  SIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTG 120

Query: 120 TQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAG 179
            Q+IYSKYAGTE+EFN   HLIL+EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAG
Sbjct: 121 AQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAG 180

Query: 180 GLLLTEASKEKPSIGMVRVV 199
           GLLLTE +KEKPSIG V  V
Sbjct: 181 GLLLTETTKEKPSIGTVIAV 200

Seems to function only as a co-chaperone, along with cpn60, and in certain cases is essential for the discharge of biologically active proteins from cpn60.
Arabidopsis thaliana (taxid: 3702)

>sp|Q02073|CH10C_SPIOL 20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1

 Score =  235 bits (600), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/200 (59%), Positives = 153/200 (76%), Gaps = 5/200 (2%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSS----VKFASVGGAPSQRSFRRLVVKAAAVVAP 56
           MA   LT++S  +   +L SF+GLR +S    +  +    + + RSFR LVV+AA++   
Sbjct: 1   MAATHLTSTS-SLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTS 59

Query: 57  KYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISV 116
           KYTS+KPLGDRVL+K K VEEKT  GIFLP+AAQ KPQ+GEVVA+G GK VG  KL ++V
Sbjct: 60  KYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAV 119

Query: 117 KPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEET 176
           K G +V+YSKY GTE+E +G++HLI++EDD++GILETD++KDLKPLNDR+ IKVAE E  
Sbjct: 120 KTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENK 179

Query: 177 TAGGLLLTEASKEKPSIGMV 196
           T+GGLLL E+SKEKPS G V
Sbjct: 180 TSGGLLLAESSKEKPSFGTV 199

Seems to function only as a co-chaperone, along with cpn60, and in certain cases is essential for the discharge of biologically active proteins from cpn60.

Spinacia oleracea (taxid: 3562)

>sp|B2A5V2|CH10_NATTJ 10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1

 Score =  104 bits (259), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 72/94 (76%), Gaps = 1/94 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKP 118
           ++KPLGDR+++KI   EEKT+ GI LP  A+ KPQ GEVVAVG GKT+   +K++  VK 
Sbjct: 2   NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKA 61

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           G +V+YSK+AG E+E +G  +LI+R+DD++ ++E
Sbjct: 62  GDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) (taxid: 457570)

>sp|B0K3P5|CH10_THEPX 10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1

 Score =  103 bits (258), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 69/92 (75%)

Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGT 120
           +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G 
Sbjct: 3   LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGD 62

Query: 121 QVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct: 63  RVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Thermoanaerobacter sp. (strain X514) (taxid: 399726)

>sp|B0KBR4|CH10_THEP3 10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1

 Score =  103 bits (258), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 69/92 (75%)

Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGT 120
           +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G 
Sbjct: 3   LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGD 62

Query: 121 QVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct: 63  RVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) (taxid: 340099)

>sp|Q60023|CH10_THEBR 10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1

 Score =  103 bits (257), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 69/92 (75%)

Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGT 120
           +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G 
Sbjct: 3   LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGD 62

Query: 121 QVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct: 63  RVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Thermoanaerobacter brockii (taxid: 29323)

>sp|A1VCP9|CH10_DESVV 10 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groS PE=3 SV=1

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 68/94 (72%), Gaps = 1/94 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
           ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK 
Sbjct: 2   NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKA 61

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct: 62  GDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Desulfovibrio vulgaris subsp. vulgaris (strain DP4) (taxid: 391774)

>sp|Q72AL5|CH10_DESVH 10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groS PE=3 SV=1

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 68/94 (72%), Gaps = 1/94 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
           ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK 
Sbjct: 2   NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKA 61

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct: 62  GDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) (taxid: 882)

>sp|B8DJC3|CH10_DESVM 10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groS PE=3 SV=1

 Score =  101 bits (251), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 67/94 (71%), Gaps = 1/94 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
           ++KPL DRVLVK    EEKT GG+F+P  A+ KP  GEVVA G GK     KL  ++VK 
Sbjct: 2   NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKK 61

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           G  V++SKYAGTE++ +G  HL++REDD++ I+E
Sbjct: 62  GDTVLFSKYAGTEIKLDGVEHLVMREDDILAIIE 95

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) (taxid: 883)

>sp|Q9XCB0|CH10_RHOMR 10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1

 Score =  101 bits (251), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 69/94 (73%)

Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGT 120
           IKPL DRV++K +  EEKT+ G+++P  A+ KPQ G V+AVG G+     K+++SVK G 
Sbjct: 6   IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGD 65

Query: 121 QVIYSKYAGTELEFNGANHLILREDDVVGILETD 154
           +V+Y KYAGTE+  +G  +LI+RE D++GI+E +
Sbjct: 66  KVLYGKYAGTEITIDGEEYLIMRETDILGIIEEE 99

Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.

Rhodothermus marinus (taxid: 29549)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
255550363	253	groes chaperonin, putative [Ricinus comm	0.892	0.786	0.795	1e-85
224068518	256	predicted protein [Populus trichocarpa]	0.892	0.777	0.793	2e-83
224141565	258	predicted protein [Populus trichocarpa]	0.878	0.759	0.797	1e-82
118489858	256	unknown [Populus trichocarpa x Populus d	0.892	0.777	0.783	2e-82
21780187	256	cp10-like protein [Gossypium hirsutum]	0.892	0.777	0.753	9e-80
15242045	253	chaperonin 20 [Arabidopsis thaliana] gi|	0.892	0.786	0.75	4e-77
225444649	251	PREDICTED: 20 kDa chaperonin, chloroplas	0.860	0.764	0.746	1e-76
356556406	253	PREDICTED: 20 kDa chaperonin, chloroplas	0.856	0.754	0.742	2e-75
388494688	254	unknown [Medicago truncatula]	0.883	0.775	0.709	7e-75
388511263	254	unknown [Medicago truncatula]	0.883	0.775	0.704	1e-74

>gi|255550363|ref|XP_002516232.1| groes chaperonin, putative [Ricinus communis] gi|223544718|gb|EEF46234.1| groes chaperonin, putative [Ricinus communis]

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 159/200 (79%), Positives = 181/200 (90%), Gaps = 1/200 (0%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASV-GGAPSQRSFRRLVVKAAAVVAPKYT 59
           MATAQLTASS+ + AR+LTSF+GLRPS+VKFAS+  G  SQRSFR LVVKAA VVAPKYT
Sbjct: 1   MATAQLTASSVSLSARNLTSFEGLRPSTVKFASLKAGGLSQRSFRSLVVKAATVVAPKYT 60

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPG 119
           SIKPLGDRVL+KIK  EEKTDGGI LP++AQTKPQ GEVVAVGEG+T+GK KLDISVK G
Sbjct: 61  SIKPLGDRVLLKIKVAEEKTDGGILLPTSAQTKPQGGEVVAVGEGRTIGKNKLDISVKTG 120

Query: 120 TQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAG 179
            QV+YSKYAGTE+EFNG++HLIL+EDD+VG+LETD+IKDLKPLNDRVFIK+A+AEE TAG
Sbjct: 121 AQVVYSKYAGTEVEFNGSSHLILKEDDIVGVLETDDIKDLKPLNDRVFIKIADAEEKTAG 180

Query: 180 GLLLTEASKEKPSIGMVRVV 199
           GLLLTEA+KEKPSIG V  V
Sbjct: 181 GLLLTEATKEKPSIGTVIAV 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068518|ref|XP_002326137.1| predicted protein [Populus trichocarpa] gi|118488687|gb|ABK96154.1| unknown [Populus trichocarpa] gi|222833330|gb|EEE71807.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 161/203 (79%), Positives = 182/203 (89%), Gaps = 4/203 (1%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASV----GGAPSQRSFRRLVVKAAAVVAP 56
           MATAQLTASSI V AR+L+SF+GLR S+VKFAS     G A SQR FR LVVKAA VVAP
Sbjct: 1   MATAQLTASSISVSARNLSSFEGLRASNVKFASFKPAGGFALSQRPFRCLVVKAATVVAP 60

Query: 57  KYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISV 116
           KYTSIKPLGDRVLVKIKTVEEK++GGI LPS+AQTKPQAGEVVAVGEGK++GK KLDISV
Sbjct: 61  KYTSIKPLGDRVLVKIKTVEEKSEGGILLPSSAQTKPQAGEVVAVGEGKSIGKTKLDISV 120

Query: 117 KPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEET 176
           K G +V+YSKYAGTE+EF+G++HLIL+EDD++GILETD+IKDLKPLNDRVFIK+AEAEE 
Sbjct: 121 KTGARVVYSKYAGTEVEFDGSSHLILKEDDIIGILETDDIKDLKPLNDRVFIKLAEAEEK 180

Query: 177 TAGGLLLTEASKEKPSIGMVRVV 199
           TAGGLLLTEA+KEKPSIG V  V
Sbjct: 181 TAGGLLLTEATKEKPSIGTVIAV 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141565|ref|XP_002324138.1| predicted protein [Populus trichocarpa] gi|222865572|gb|EEF02703.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 161/202 (79%), Positives = 180/202 (89%), Gaps = 6/202 (2%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFAS------VGGAPSQRSFRRLVVKAAAVV 54
           MATAQLTA SI V AR+L+SF+GLR S+VKFAS      VG   S+RSF+ LVVKAA VV
Sbjct: 1   MATAQLTAFSISVSARNLSSFEGLRASNVKFASFKPLVGVGLPLSRRSFQGLVVKAATVV 60

Query: 55  APKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI 114
           APKYTSI PLGDRVLVKIKTVEEKT+ GI LPS+AQ+KPQ GEVVAVGEGKT+GKAKLDI
Sbjct: 61  APKYTSITPLGDRVLVKIKTVEEKTESGILLPSSAQSKPQGGEVVAVGEGKTIGKAKLDI 120

Query: 115 SVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAE 174
           SVK GTQV+YSKYAGTE+EF+G++HLIL+EDD+VGILETD+IKDLKPLNDRVFIKVAEAE
Sbjct: 121 SVKTGTQVVYSKYAGTEVEFDGSSHLILKEDDIVGILETDDIKDLKPLNDRVFIKVAEAE 180

Query: 175 ETTAGGLLLTEASKEKPSIGMV 196
           E TAGGLLLTEA+KEKPSIG V
Sbjct: 181 EKTAGGLLLTEATKEKPSIGTV 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489858|gb|ABK96728.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 159/203 (78%), Positives = 180/203 (88%), Gaps = 4/203 (1%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASV----GGAPSQRSFRRLVVKAAAVVAP 56
           MATAQLTASSI V AR+L+S +GLR S+VKFAS     G A SQR FR LVVKAA VVAP
Sbjct: 1   MATAQLTASSISVSARNLSSLEGLRASNVKFASFKPAGGFALSQRPFRCLVVKAATVVAP 60

Query: 57  KYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISV 116
           KYTSIKPLGDRVLVKIKTVEEK++GGI LPS+AQTKPQAGEVVAVGEGK+ GK KLDISV
Sbjct: 61  KYTSIKPLGDRVLVKIKTVEEKSEGGILLPSSAQTKPQAGEVVAVGEGKSTGKTKLDISV 120

Query: 117 KPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEET 176
           K G +V+YSKYAGTE+EF+G++HLIL+EDD++GILETD+I+DLKPLNDRVFIK+AEAEE 
Sbjct: 121 KTGARVVYSKYAGTEVEFDGSSHLILKEDDIIGILETDDIRDLKPLNDRVFIKIAEAEEK 180

Query: 177 TAGGLLLTEASKEKPSIGMVRVV 199
           TAGGLLLTEA+KEKPSIG V  V
Sbjct: 181 TAGGLLLTEATKEKPSIGTVIAV 203

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21780187|gb|AAM77651.1|AF522274_1 cp10-like protein [Gossypium hirsutum]

 Score =  301 bits (772), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 153/203 (75%), Positives = 172/203 (84%), Gaps = 4/203 (1%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG----GAPSQRSFRRLVVKAAAVVAP 56
           MAT+QLTASS+   AR+L S  GLR S+VKF+S G    GA + RSFR LVVKAA VVAP
Sbjct: 1   MATSQLTASSVTASARNLASLQGLRLSTVKFSSFGTLKPGAVTSRSFRGLVVKAATVVAP 60

Query: 57  KYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISV 116
           KYTS+KPLGDRVLVKIK  EEKT+GGI LP+ AQ+KPQ GEVVAVGEGKT+G  K + SV
Sbjct: 61  KYTSVKPLGDRVLVKIKETEEKTEGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKSESSV 120

Query: 117 KPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEET 176
           K G QVIYSKYAGTE+EFNGANHL+L+EDD+VG+LETD+IKDLKPLNDRVFIKV+EAEE 
Sbjct: 121 KTGAQVIYSKYAGTEVEFNGANHLLLKEDDIVGLLETDDIKDLKPLNDRVFIKVSEAEEK 180

Query: 177 TAGGLLLTEASKEKPSIGMVRVV 199
           TAGGLLLTEASKEKPSIG V  V
Sbjct: 181 TAGGLLLTEASKEKPSIGTVIAV 203

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242045|ref|NP_197572.1| chaperonin 20 [Arabidopsis thaliana] gi|30687936|ref|NP_851045.1| chaperonin 20 [Arabidopsis thaliana] gi|334187803|ref|NP_001190350.1| chaperonin 20 [Arabidopsis thaliana] gi|297808145|ref|XP_002871956.1| hypothetical protein ARALYDRAFT_488978 [Arabidopsis lyrata subsp. lyrata] gi|12643263|sp|O65282.2|CH10C_ARATH RecName: Full=20 kDa chaperonin, chloroplastic; AltName: Full=Chaperonin 10; Short=Ch-CPN10; Short=Cpn10; AltName: Full=Chaperonin 20; AltName: Full=Protein Cpn21; Flags: Precursor gi|10179872|gb|AAG13931.1|AF268068_1 chaperonin 10 [Arabidopsis thaliana] gi|16226815|gb|AAL16269.1|AF428339_1 AT5g20720/T1M15_120 [Arabidopsis thaliana] gi|16226911|gb|AAL16296.1|AF428366_1 AT5g20720/T1M15_120 [Arabidopsis thaliana] gi|4127456|emb|CAA09368.1| Cpn21 protein [Arabidopsis thaliana] gi|14334612|gb|AAK59484.1| putative chloroplast Cpn21 protein [Arabidopsis thaliana] gi|14587373|dbj|BAB61619.1| chaperonin 20 [Arabidopsis thaliana] gi|17065646|gb|AAL33817.1| putative chloroplast Cpn21 protein [Arabidopsis thaliana] gi|297317793|gb|EFH48215.1| hypothetical protein ARALYDRAFT_488978 [Arabidopsis lyrata subsp. lyrata] gi|332005498|gb|AED92881.1| chaperonin 20 [Arabidopsis thaliana] gi|332005499|gb|AED92882.1| chaperonin 20 [Arabidopsis thaliana] gi|332005500|gb|AED92883.1| chaperonin 20 [Arabidopsis thaliana]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 150/200 (75%), Positives = 167/200 (83%), Gaps = 1/200 (0%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAPSQRSFRRLVVKAAAVVAPKYT 59
           MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRLVVKAA+VVAPKYT
Sbjct: 1   MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYT 60

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPG 119
           SIKPLGDRVLVKIK  EEKT GGI LPS AQ+KPQ GEVVAVGEG+T+GK K+DI+V  G
Sbjct: 61  SIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTG 120

Query: 120 TQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAG 179
            Q+IYSKYAGTE+EFN   HLIL+EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAG
Sbjct: 121 AQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAG 180

Query: 180 GLLLTEASKEKPSIGMVRVV 199
           GLLLTE +KEKPSIG V  V
Sbjct: 181 GLLLTETTKEKPSIGTVIAV 200

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444649|ref|XP_002276749.1| PREDICTED: 20 kDa chaperonin, chloroplastic [Vitis vinifera] gi|50660327|gb|AAT80888.1| chloroplast chaperonin 21 [Vitis vinifera] gi|297738526|emb|CBI27771.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 147/197 (74%), Positives = 167/197 (84%), Gaps = 5/197 (2%)

Query: 8   ASSIKVPARSLTSFDGLRPSSVKFASVG-----GAPSQRSFRRLVVKAAAVVAPKYTSIK 62
           A++  +  RSL SF+GLRPS+V+ +S+G     G  +QRSFR LVV+AA VV PKYTS+K
Sbjct: 2   ATAPTISTRSLPSFEGLRPSTVRISSMGLPLKAGGLTQRSFRSLVVRAATVVTPKYTSLK 61

Query: 63  PLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQV 122
           PLGDRVLVKIKT EEKT GGI LP+ AQTKPQ GEVVAVGEGKT+GK KLDI VK G QV
Sbjct: 62  PLGDRVLVKIKTAEEKTVGGILLPTTAQTKPQGGEVVAVGEGKTIGKNKLDICVKTGAQV 121

Query: 123 IYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLL 182
           +YSKYAGTE+EFNG+NHLIL+EDD+VGILETD++KDLKPLNDRV IKVAEAEE TAGGLL
Sbjct: 122 VYSKYAGTEVEFNGSNHLILKEDDIVGILETDDVKDLKPLNDRVLIKVAEAEEKTAGGLL 181

Query: 183 LTEASKEKPSIGMVRVV 199
           LTEASKEKPSIG V  V
Sbjct: 182 LTEASKEKPSIGTVVAV 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556406|ref|XP_003546517.1| PREDICTED: 20 kDa chaperonin, chloroplastic-like [Glycine max] gi|255647873|gb|ACU24395.1| unknown [Glycine max]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 150/202 (74%), Positives = 170/202 (84%), Gaps = 11/202 (5%)

Query: 1   MATAQLTA--SSIKVPARSLTSFDGLRPSSVKFASVG----GAPSQRSFRRLVVKAAAVV 54
           MA+AQLTA  SSI     S  SF+GLRPS+V+FAS G    G  SQRSFR LVVKAA VV
Sbjct: 1   MASAQLTAIASSI-----STASFEGLRPSAVQFASTGRIRIGNLSQRSFRGLVVKAATVV 55

Query: 55  APKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI 114
           APKYT+IKPLGDRVL+KIK  EEKT+GGI LPS AQTKPQ GEVVAVGEGKTVGK  ++I
Sbjct: 56  APKYTAIKPLGDRVLIKIKEAEEKTEGGILLPSTAQTKPQGGEVVAVGEGKTVGKNNVEI 115

Query: 115 SVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAE 174
           SVK G QV+YSKYAGTE++FNG  HLI+++DD+VGILETD+IKDLKPLNDRV IKVAEAE
Sbjct: 116 SVKTGAQVVYSKYAGTEVDFNGTKHLIVKDDDIVGILETDDIKDLKPLNDRVLIKVAEAE 175

Query: 175 ETTAGGLLLTEASKEKPSIGMV 196
           E T+GGLLLTEA+K+KPSIG V
Sbjct: 176 EKTSGGLLLTEATKDKPSIGTV 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494688|gb|AFK35410.1| unknown [Medicago truncatula]

 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 144/203 (70%), Positives = 170/203 (83%), Gaps = 6/203 (2%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG----GAPSQRSFRRLVVKAAAVVAP 56
           MA++QLTASSI    RS+ SF+GLRPSSV+F S      G P++RSF+ L+VKAA VVAP
Sbjct: 1   MASSQLTASSIST--RSVASFEGLRPSSVQFHSARHVRIGNPARRSFKALIVKAATVVAP 58

Query: 57  KYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISV 116
           KYT+IKPLGDRVLVKIK  EEKT  GI LPS+AQTKPQ GEVVAVGEGKT+GK +++ISV
Sbjct: 59  KYTAIKPLGDRVLVKIKEAEEKTQSGILLPSSAQTKPQGGEVVAVGEGKTLGKNQVEISV 118

Query: 117 KPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEET 176
           KPG QV+YSKYAGTE++FNG  HLIL++DD+VGILETD+IKDLKPLNDRV IK+ +AEE 
Sbjct: 119 KPGAQVVYSKYAGTEVDFNGEKHLILKDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEK 178

Query: 177 TAGGLLLTEASKEKPSIGMVRVV 199
           T+GGL LTEA+KEKPS G V  V
Sbjct: 179 TSGGLYLTEATKEKPSFGTVVAV 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511263|gb|AFK43693.1| unknown [Medicago truncatula]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 143/203 (70%), Positives = 170/203 (83%), Gaps = 6/203 (2%)

Query: 1   MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG----GAPSQRSFRRLVVKAAAVVAP 56
           MA++QLTASSI    RS+ SF+GLRPSSV+F S      G P++RSF+ L+VKAA VVAP
Sbjct: 1   MASSQLTASSIST--RSVASFEGLRPSSVQFHSARHVRIGNPARRSFKALIVKAATVVAP 58

Query: 57  KYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISV 116
           KYT+IKPLGDRVLVKIK  EEKT  GI LPS+AQTKPQ GEVVAVGEGKT+GK +++ISV
Sbjct: 59  KYTAIKPLGDRVLVKIKEAEEKTQSGILLPSSAQTKPQGGEVVAVGEGKTLGKNQVEISV 118

Query: 117 KPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEET 176
           KPG QV+YSKYAGTE++FNG  HL+L++DD+VGILETD+IKDLKPLNDRV IK+ +AEE 
Sbjct: 119 KPGAQVVYSKYAGTEVDFNGEKHLVLKDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEK 178

Query: 177 TAGGLLLTEASKEKPSIGMVRVV 199
           T+GGL LTEA+KEKPS G V  V
Sbjct: 179 TSGGLYLTEATKEKPSFGTVVAV 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2180454	253	CPN20 "chaperonin 20" [Arabido	0.892	0.786	0.71	3.5e-68
TIGR_CMR|GSU_3339	95	GSU_3339 "chaperonin, 10 kDa"	0.417	0.978	0.478	2.1e-20
TIGR_CMR|BA_0266	94	BA_0266 "chaperonin, 10 kDa" [	0.408	0.968	0.456	2.5e-19
TIGR_CMR|CHY_0806	94	CHY_0806 "chaperonin, 10 kDa"	0.408	0.968	0.521	2.5e-19
TIGR_CMR|CBU_1719	96	CBU_1719 "chaperonin, 10 kDa"	0.408	0.947	0.436	5.8e-18
TIGR_CMR|SPO_0886	95	SPO_0886 "chaperonin, 10 kDa"	0.417	0.978	0.436	1.4e-16
UNIPROTKB|P09621	100	groS "10 kDa chaperonin" [Myco	0.412	0.92	0.436	1.8e-16
TIGR_CMR|CPS_0956	96	CPS_0956 "chaperone protein Gr	0.417	0.968	0.452	3e-14
TIGR_CMR|NSE_0643	98	NSE_0643 "10 kDa chaperonin" [	0.403	0.918	0.414	1.2e-12
GENEDB_PFALCIPARUM|PFL0740c	103	PFL0740c "10 kd chaperonin, pu	0.412	0.893	0.372	2.4e-12

TAIR|locus:2180454 CPN20 "chaperonin 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 142/200 (71%), Positives = 158/200 (79%)

Query:     1 MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAPSQRSFRRLXXXXXXXXXPKYT 59
             MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRL         PKYT
Sbjct:     1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYT 60

Query:    60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPG 119
             SIKPLGDRVLVKIK  EEKT GGI LPS AQ+KPQ GEVVAVGEG+T+GK K+DI+V  G
Sbjct:    61 SIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTG 120

Query:   120 TQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAG 179
              Q+IYSKYAGTE+EFN   HLIL+EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAG
Sbjct:   121 AQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAG 180

Query:   180 GLLLTEASKEKPSIGMVRVV 199
             GLLLTE +KEKPSIG V  V
Sbjct:   181 GLLLTETTKEKPSIGTVIAV 200

GO:0005737 "cytoplasm" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0005516 "calmodulin binding" evidence=TAS

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005739 "mitochondrion" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0009536 "plastid" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:1901671 "positive regulation of superoxide dismutase activity" evidence=IDA

TIGR_CMR|GSU_3339 GSU_3339 "chaperonin, 10 kDa" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 45/94 (47%), Positives = 66/94 (70%)

Query:    60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKP 118
             +++PL DR+LVK    E KT GGIF+P  A+ KPQ GE+VAVG GK     K + + +K 
Sbjct:     2 NLRPLQDRILVKRIEEETKTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPVDLKV 61

Query:   119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
             G +V++ KYAGT+++  G   LI+REDD++G++E
Sbjct:    62 GDKVLFGKYAGTDIKIEGQEFLIMREDDILGVIE 95

GO:0006457 "protein folding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

TIGR_CMR|BA_0266 BA_0266 "chaperonin, 10 kDa" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 42/92 (45%), Positives = 66/92 (71%)

Query:    61 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPG 119
             +KPLGDRV++++   EEKT  GI LP  A+ KPQ G+V+AVG G+ +    ++ + V  G
Sbjct:     2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAG 61

Query:   120 TQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
               +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    62 DLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

GO:0006457 "protein folding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

TIGR_CMR|CHY_0806 CHY_0806 "chaperonin, 10 kDa" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 48/92 (52%), Positives = 63/92 (68%)

Query:    62 KPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGT 120
             +PL DRVLVK    EE T  GI +P  A+ KPQ GEV AVG G+ +    ++ + VK G 
Sbjct:     3 RPLHDRVLVKPLPTEEVTKSGIVIPDTAKEKPQQGEVKAVGSGRILENGERVPMEVKVGD 62

Query:   121 QVIYSKYAGTELEFNGANHLILREDDVVGILE 152
             +V YSKYAGTE++ +G  +LILRE D++GILE
Sbjct:    63 RVFYSKYAGTEVKIDGEEYLILRESDILGILE 94

GO:0006457 "protein folding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

TIGR_CMR|CBU_1719 CBU_1719 "chaperonin, 10 kDa" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 41/94 (43%), Positives = 67/94 (71%)

Query:    61 IKPLGDRVLVKIKTVEEKTD-GGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
             I+PL DRV+V+ +  EE+T  GGI +P +A  KP  GEV++VG GK +   ++  + VK 
Sbjct:     3 IRPLHDRVVVR-RLEEERTSAGGIVIPDSAAEKPSRGEVISVGPGKPLDNGEVRSLDVKV 61

Query:   119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
             G Q+++ KYAGTE++  G  ++++REDD++G++E
Sbjct:    62 GDQILFGKYAGTEVKLAGDEYIVMREDDIMGVIE 95

GO:0006457 "protein folding" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

TIGR_CMR|SPO_0886 SPO_0886 "chaperonin, 10 kDa" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 41/94 (43%), Positives = 64/94 (68%)

Query:    60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
             ++KPL DRVLV+    EEKT GG+ +P +A+ KP  G VVA GEG      +L  ++VK 
Sbjct:     2 ALKPLHDRVLVRRTESEEKTAGGLIIPDSAKEKPSEGVVVACGEGARKDSGELIAMAVKS 61

Query:   119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
             G +V++ K++GTE+  +G   L+++E D++GI+E
Sbjct:    62 GDRVLFGKWSGTEVTVDGEELLMMKESDIMGIIE 95

GO:0006457 "protein folding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

UNIPROTKB|P09621 groS "10 kDa chaperonin" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 41/94 (43%), Positives = 60/94 (63%)

Query:    60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVK 117
             +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V 
Sbjct:     5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 64

Query:   118 PGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
              G  VIYSKY GTE+++NG  +LIL   DV+ ++
Sbjct:    65 EGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98

GO:0005576 "extracellular region" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009408 "response to heat" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0046677 "response to antibiotic" evidence=IEP

GO:0046872 "metal ion binding" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

TIGR_CMR|CPS_0956 CPS_0956 "chaperone protein GroES" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 43/95 (45%), Positives = 60/95 (63%)

Query:    60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
             SI+PL DRV+VK K VE K+ GGI L  +A  K   GEV+AVG G+ +   ++  + VK 
Sbjct:     2 SIRPLHDRVIVKRKKVESKSAGGIVLTGSAAEKSTRGEVIAVGNGRILENGEVRPLDVKV 61

Query:   119 GTQVIYSKYAGTELE-FNGANHLILREDDVVGILE 152
             G QVI+S+  G + E  +G   LIL E D++ I+E
Sbjct:    62 GDQVIFSEGYGVKTEKIDGEEVLILSESDILAIVE 96

GO:0006457 "protein folding" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

TIGR_CMR|NSE_0643 NSE_0643 "10 kDa chaperonin" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 39/94 (41%), Positives = 59/94 (62%)

Query:    61 IKPLGDRVLVKIKTVEEKTD-GGIFLPSAAQTKPQAGEVVAVGEG-KTVGKAKLDISVKP 118
             +K L D+VL  I+  EEK   GGI++P +A+ KP  G VVAVG G K        + VK 
Sbjct:     5 LKMLHDQVL--IRPHEEKDGAGGIYIPDSAKKKPTMGLVVAVGAGAKNSNGTFQPVCVKE 62

Query:   119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
             G  V+Y K+AG+E+E +G  +++++E D++ I E
Sbjct:    63 GDIVLYRKWAGSEVEHDGVEYVVMKETDIIAIKE 96

GO:0006457 "protein folding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

GENEDB_PFALCIPARUM|PFL0740c PFL0740c "10 kd chaperonin, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 35/94 (37%), Positives = 55/94 (58%)

Query:    63 PLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQ 121
             PL DR+L+     +  T  G+FLP +A      G+V+AVG G+ T    K+  SVK G  
Sbjct:    11 PLMDRILISKIVPKTTTKSGLFLPESATEPSYTGKVLAVGPGRVTSNGTKISPSVKEGDV 70

Query:   122 VIYSKYAGTELEFNGANHLILREDDVVGILETDE 155
             V+  +Y G+ L+ +G    + R+DD++GI++ DE
Sbjct:    71 VVLPEYGGSSLKIDGEEFFVYRDDDIIGIIK-DE 103

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O65282	CH10C_ARATH	No assigned EC number	0.75	0.8923	0.7865	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_280199	SubName- Full=Putative uncharacterized protein; (256 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_660263	hypothetical protein (588 aa)	•		•	•			•		0.487
	estExt_fgenesh4_pm.C_LG_IX0706	SubName- Full=Putative uncharacterized protein; (587 aa)	•		•	•			•		0.487
	estExt_fgenesh4_pm.C_LG_I0166	SubName- Full=Putative uncharacterized protein; (575 aa)	•		•	•			•		0.487
	estExt_fgenesh4_pg.C_LG_II2507	hypothetical protein (575 aa)	•		•	•			•		0.484
	estExt_Genewise1_v1.C_LG_III2625	hypothetical protein (607 aa)	•		•	•			•		0.480
	fgenesh4_pm.C_LG_I000009	SubName- Full=Putative uncharacterized protein; (607 aa)	•		•	•			•		0.478
	gw1.XV.2796.1	annotation not avaliable (541 aa)	•		•	•			•		0.427
	fgenesh4_pm.C_LG_X000536	hypothetical protein (475 aa)	•		•	•			•		0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
PRK00364	95	PRK00364, groES, co-chaperonin GroES; Reviewed	2e-36
smart00883	93	smart00883, Cpn10, Chaperonin 10 Kd subunit	3e-36
cd00320	93	cd00320, cpn10, Chaperonin 10 Kd subunit (cpn10 or	7e-33
pfam00166	91	pfam00166, Cpn10, Chaperonin 10 Kd subunit	2e-32
COG0234	96	COG0234, GroS, Co-chaperonin GroES (HSP10) [Posttr	2e-32
PRK14533	91	PRK14533, groES, co-chaperonin GroES; Provisional	2e-19
PRK00364	95	PRK00364, groES, co-chaperonin GroES; Reviewed	1e-11
smart00883	93	smart00883, Cpn10, Chaperonin 10 Kd subunit	6e-11
cd00320	93	cd00320, cpn10, Chaperonin 10 Kd subunit (cpn10 or	2e-10
pfam00166	91	pfam00166, Cpn10, Chaperonin 10 Kd subunit	3e-10
COG0234	96	COG0234, GroS, Co-chaperonin GroES (HSP10) [Posttr	1e-09
PTZ00414	100	PTZ00414, PTZ00414, 10 kDa heat shock protein; Pro	9e-08

>gnl|CDD|178988 PRK00364, groES, co-chaperonin GroES; Reviewed

 Score =  122 bits (310), Expect = 2e-36
 Identities = 50/94 (53%), Positives = 68/94 (72%), Gaps = 1/94 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
           ++KPLGDRVLVK    EEKT GGI LP +A+ KPQ GEVVAVG G+ +   +   + VK 
Sbjct: 2   NLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKV 61

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           G +V++ KYAGTE++ +G  +LILRE D++ I+E
Sbjct: 62  GDKVLFGKYAGTEVKIDGEEYLILRESDILAIVE 95

Length = 95

>gnl|CDD|197951 smart00883, Cpn10, Chaperonin 10 Kd subunit

 Score =  122 bits (309), Expect = 3e-36
 Identities = 49/93 (52%), Positives = 65/93 (69%), Gaps = 1/93 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
            IKPLGDRVLVK    EEKT GGI +P  A+ KPQ GEVVAVG GK +   +   + VK 
Sbjct: 1   KIKPLGDRVLVKRIEEEEKTAGGIVIPDTAKEKPQEGEVVAVGPGKRLENGERVPLDVKV 60

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
           G +V++ KYAGTE++ +G  +LILRE D++ ++
Sbjct: 61  GDKVLFGKYAGTEVKLDGEEYLILRESDILAVI 93

The chaperonins are 'helper' molecules required for correct folding and subsequent assembly of some proteins. These are required for normal cell growth, and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10). The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Length = 93

>gnl|CDD|238197 cd00320, cpn10, Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

 Score =  113 bits (286), Expect = 7e-33
 Identities = 49/93 (52%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
            IKPLGDRVLVK    EEKT GGI LP +A+ KPQ G+VVAVG G+     +   +SVK 
Sbjct: 1   KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKV 60

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
           G +V++ KYAGTE++ +G  +LILRE D++ ++
Sbjct: 61  GDKVLFPKYAGTEVKLDGEEYLILRESDILAVI 93

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface. Length = 93

>gnl|CDD|201050 pfam00166, Cpn10, Chaperonin 10 Kd subunit

 Score =  112 bits (283), Expect = 2e-32
 Identities = 47/91 (51%), Positives = 64/91 (70%)

Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGT 120
           IKPLGDRVLVK +  EEKT GGI LP +A+ KP  GEVVAVG G       + + VK G 
Sbjct: 1   IKPLGDRVLVKREEAEEKTKGGIILPDSAKEKPNQGEVVAVGPGARNNGEDVPLEVKVGD 60

Query: 121 QVIYSKYAGTELEFNGANHLILREDDVVGIL 151
           +V++ KYAGTE++ +G  +LIL+E D++ ++
Sbjct: 61  KVLFPKYAGTEVKIDGEEYLILKEKDILAVI 91

This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis. Length = 91

>gnl|CDD|223312 COG0234, GroS, Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]

 Score =  112 bits (283), Expect = 2e-32
 Identities = 51/94 (54%), Positives = 66/94 (70%), Gaps = 1/94 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
            IKPLGDRVLVK    EEKT GGI LP +A+ KPQ GEVVAVG G+     +L  + VK 
Sbjct: 2   KIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKV 61

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           G +V++ KYAGTE++ +G  +LIL E D++ I+E
Sbjct: 62  GDRVLFGKYAGTEVKIDGEEYLILSESDILAIVE 95

Length = 96

>gnl|CDD|184730 PRK14533, groES, co-chaperonin GroES; Provisional

 Score = 79.1 bits (195), Expect = 2e-19
 Identities = 38/92 (41%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGT 120
           + PLG+R+L+K    E+KT+GGI LP +A+ KP   EVVAVG+         D  +K G 
Sbjct: 3   VIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDDEE----DFDIKVGD 58

Query: 121 QVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           +VI+SKYAGTE++ +  +++I+  +D++  +E
Sbjct: 59  KVIFSKYAGTEIKIDDEDYIIIDVNDILAKIE 90

Length = 91

>gnl|CDD|178988 PRK00364, groES, co-chaperonin GroES; Reviewed

 Score = 58.6 bits (143), Expect = 1e-11
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVV 199
           LKPL DRV +K  E EE TAGG++L +++KEKP  G V  V
Sbjct: 3   LKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAV 43

Length = 95

>gnl|CDD|197951 smart00883, Cpn10, Chaperonin 10 Kd subunit

 Score = 56.7 bits (138), Expect = 6e-11
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMV 196
           +KPL DRV +K  E EE TAGG+++ + +KEKP  G V
Sbjct: 2   IKPLGDRVLVKRIEEEEKTAGGIVIPDTAKEKPQEGEV 39

The chaperonins are 'helper' molecules required for correct folding and subsequent assembly of some proteins. These are required for normal cell growth, and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10). The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Length = 93

>gnl|CDD|238197 cd00320, cpn10, Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

 Score = 55.2 bits (134), Expect = 2e-10
 Identities = 21/38 (55%), Positives = 28/38 (73%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMV 196
           +KPL DRV +K  EAEE T GG++L +++KEKP  G V
Sbjct: 2   IKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKV 39

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface. Length = 93

>gnl|CDD|201050 pfam00166, Cpn10, Chaperonin 10 Kd subunit

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 21/38 (55%), Positives = 29/38 (76%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMV 196
           +KPL DRV +K  EAEE T GG++L +++KEKP+ G V
Sbjct: 1   IKPLGDRVLVKREEAEEKTKGGIILPDSAKEKPNQGEV 38

This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis. Length = 91

>gnl|CDD|223312 COG0234, GroS, Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]

 Score = 53.3 bits (129), Expect = 1e-09
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVV 199
           +KPL DRV +K  E EE TAGG++L +++KEKP  G V  V
Sbjct: 3   IKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAV 43

Length = 96

>gnl|CDD|173604 PTZ00414, PTZ00414, 10 kDa heat shock protein; Provisional

 Score = 48.5 bits (115), Expect = 9e-08
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 53  VVAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL 112
              P    ++PLG RVLVK     ++T  G+ +P     K   G VVAV           
Sbjct: 4   FTVPALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATK----DW 59

Query: 113 DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
             +VK G  V+  ++ G+ ++  G    +  ED ++G+L+
Sbjct: 60  TPTVKVGDTVLLPEFGGSSVKVEGEEFFLYNEDSLLGVLQ 99

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
COG0234	96	GroS Co-chaperonin GroES (HSP10) [Posttranslationa	100.0
PTZ00414	100	10 kDa heat shock protein; Provisional	100.0
PRK00364	95	groES co-chaperonin GroES; Reviewed	100.0
PRK14533	91	groES co-chaperonin GroES; Provisional	100.0
cd00320	93	cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C	99.98
PF00166	93	Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR0208	99.97
KOG1641	104	consensus Mitochondrial chaperonin [Posttranslatio	99.95
COG0234	96	GroS Co-chaperonin GroES (HSP10) [Posttranslationa	99.88
PTZ00414	100	10 kDa heat shock protein; Provisional	99.88
PRK14533	91	groES co-chaperonin GroES; Provisional	99.85
KOG1641	104	consensus Mitochondrial chaperonin [Posttranslatio	99.85
PRK00364	95	groES co-chaperonin GroES; Reviewed	99.84
cd00320	93	cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C	99.81
PF00166	93	Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR0208	99.76
COG1329	166	Transcriptional regulators, similar to M. xanthus	81.42

>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.1e-36  Score=231.08  Aligned_cols=94  Identities=53%  Similarity=0.844  Sum_probs=90.5

Q ss_pred             ccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCC-eeeecccCCcEEEecCCCceEEEEcCe
Q 027479           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGA  137 (223)
Q Consensus        59 ~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~-~vp~~VkvGD~Vlf~ky~G~eV~~dg~  137 (223)
                      ++|+||+|||||++.++|++|+|||+||+++++||+.|+|||||+|..++++ .+|++||+||+|+|++|+|+++++||+
T Consensus         1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dge   80 (96)
T COG0234           1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGE   80 (96)
T ss_pred             CCceecCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEECCE
Confidence            5799999999999999999999999999999999999999999999988876 589999999999999999999999999


Q ss_pred             eeEEEeccceeeeee
Q 027479          138 NHLILREDDVVGILE  152 (223)
Q Consensus       138 ~y~ilre~DIlaii~  152 (223)
                      +|+||+++||||+++
T Consensus        81 eylil~e~DILAiv~   95 (96)
T COG0234          81 EYLILSESDILAIVE   95 (96)
T ss_pred             EEEEechHHeeEEec
Confidence            999999999999986

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=100.00  E-value=2e-34  Score=225.18  Aligned_cols=95  Identities=29%  Similarity=0.587  Sum_probs=89.1

Q ss_pred             ccccccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCCeeeecccCCcEEEecCCCceEEEE
Q 027479           55 APKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEF  134 (223)
Q Consensus        55 ~~~~~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ky~G~eV~~  134 (223)
                      ++++++|+||+||||||+.++|++|+|||+||+++++||++|+|+|||+|+..    .|++||+||+|+|++|+|++|++
T Consensus         6 ~~~~~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~----~~~~Vk~GD~Vl~~~y~Gtevk~   81 (100)
T PTZ00414          6 VPALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKD----WTPTVKVGDTVLLPEFGGSSVKV   81 (100)
T ss_pred             ccccccceecCCEEEEEEcccccccccCEEcccccccCCceeEEEEECCCCcc----ccceecCCCEEEEcCCCCcEEEE
Confidence            35678899999999999999999999999999999999999999999999743    47899999999999999999999


Q ss_pred             cCeeeEEEeccceeeeeec
Q 027479          135 NGANHLILREDDVVGILET  153 (223)
Q Consensus       135 dg~~y~ilre~DIlaii~~  153 (223)
                      ||++|++++|+||||+++.
T Consensus        82 dg~ey~i~~e~DILavi~~  100 (100)
T PTZ00414         82 EGEEFFLYNEDSLLGVLQG  100 (100)
T ss_pred             CCEEEEEEEhHHEEEEecC
Confidence            9999999999999999863

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=100.00  E-value=1.1e-33  Score=218.48  Aligned_cols=94  Identities=53%  Similarity=0.895  Sum_probs=89.7

Q ss_pred             ccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCC-eeeecccCCcEEEecCCCceEEEEcCe
Q 027479           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGA  137 (223)
Q Consensus        59 ~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~-~vp~~VkvGD~Vlf~ky~G~eV~~dg~  137 (223)
                      ++|+||+|||||++.+++++|+|||+||+++++|++.|+|+|||+|+.+++| .+|++||+||+|+|++|+|++|++||+
T Consensus         1 ~~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~~~   80 (95)
T PRK00364          1 MNLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKIDGE   80 (95)
T ss_pred             CcceEcCCEEEEEEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEECCE
Confidence            3699999999999999999999999999999999999999999999988776 489999999999999999999999999


Q ss_pred             eeEEEeccceeeeee
Q 027479          138 NHLILREDDVVGILE  152 (223)
Q Consensus       138 ~y~ilre~DIlaii~  152 (223)
                      +|+|++++||||+++
T Consensus        81 ~y~iv~~~DIlavi~   95 (95)
T PRK00364         81 EYLILRESDILAIVE   95 (95)
T ss_pred             EEEEEEHHHEEEEeC
Confidence            999999999999985

>PRK14533 groES co-chaperonin GroES; Provisional

Probab=100.00  E-value=5e-33  Score=213.95  Aligned_cols=91  Identities=42%  Similarity=0.727  Sum_probs=85.9

Q ss_pred             ccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCCeeeecccCCcEEEecCCCceEEEEcCee
Q 027479           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGAN  138 (223)
Q Consensus        59 ~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ky~G~eV~~dg~~  138 (223)
                      ++|+||+|||||++.++|++|+|||+||+++++|++.|+|+|||+|..    ..|++||+||+|+|++|+|++|+++|++
T Consensus         1 ~~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~~----~~~~~Vk~GD~Vl~~~y~g~ev~~~~~~   76 (91)
T PRK14533          1 MKVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDD----EEDFDIKVGDKVIFSKYAGTEIKIDDED   76 (91)
T ss_pred             CCceEcCCEEEEEEccccceecccEEecccccCCcceEEEEEECCCCc----cccccccCCCEEEEccCCCeEEEECCEE
Confidence            479999999999999999999999999999999999999999999852    4589999999999999999999999999


Q ss_pred             eEEEeccceeeeeec
Q 027479          139 HLILREDDVVGILET  153 (223)
Q Consensus       139 y~ilre~DIlaii~~  153 (223)
                      |+|++++||||++++
T Consensus        77 y~iv~e~DILa~i~~   91 (91)
T PRK14533         77 YIIIDVNDILAKIEE   91 (91)
T ss_pred             EEEEEhHhEEEEeeC
Confidence            999999999999863

>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

Probab=99.98  E-value=1.4e-32  Score=211.57  Aligned_cols=92  Identities=53%  Similarity=0.897  Sum_probs=88.2

Q ss_pred             cccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCCe-eeecccCCcEEEecCCCceEEEEcCee
Q 027479           60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAN  138 (223)
Q Consensus        60 ~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vlf~ky~G~eV~~dg~~  138 (223)
                      +|+||+|||||++.++|++|+|||+||+++++|++.|+|+|||+|+.++++. +|++||+||+|+|++|+|++|++||++
T Consensus         1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~   80 (93)
T cd00320           1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEE   80 (93)
T ss_pred             CceecCCEEEEEEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECCEE
Confidence            4899999999999999999999999999999999999999999999888764 899999999999999999999999999


Q ss_pred             eEEEeccceeeee
Q 027479          139 HLILREDDVVGIL  151 (223)
Q Consensus       139 y~ilre~DIlaii  151 (223)
                      |+|++++||||++
T Consensus        81 y~i~~~~DIla~i   93 (93)
T cd00320          81 YLILRESDILAVI   93 (93)
T ss_pred             EEEEEHHHEEEEC
Confidence            9999999999985

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.

>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []

Probab=99.97  E-value=1.3e-30  Score=199.88  Aligned_cols=92  Identities=51%  Similarity=0.875  Sum_probs=85.0

Q ss_pred             cccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCCe-eeecccCCcEEEecCCCceEEEEcCee
Q 027479           60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAN  138 (223)
Q Consensus        60 ~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vlf~ky~G~eV~~dg~~  138 (223)
                      +|+||+|||||++.+++++|+|||+||++++++++.|+|||||+|+...++. +|++|++||+|+|++|+|+++++||++
T Consensus         1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~   80 (93)
T PF00166_consen    1 KIKPLGDRVLVKKIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFDGEK   80 (93)
T ss_dssp             EEEESTTEEEEEECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEETTEE
T ss_pred             CceecCCEEEEEEccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEECCEE
Confidence            5899999999999999999999999999999999999999999999987764 899999999999999999999999999


Q ss_pred             eEEEeccceeeee
Q 027479          139 HLILREDDVVGIL  151 (223)
Q Consensus       139 y~ilre~DIlaii  151 (223)
                      |++++++||+|++
T Consensus        81 ~~~~~~~dIlavi   93 (93)
T PF00166_consen   81 YLIVREDDILAVI   93 (93)
T ss_dssp             EEEEEGGGEEEEE
T ss_pred             EEEEEHHHeEEEC
Confidence            9999999999986

These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....

>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=6.2e-29  Score=194.07  Aligned_cols=98  Identities=33%  Similarity=0.503  Sum_probs=90.7

Q ss_pred             cccccccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCCe-eeecccCCcEEEecCCCceEE
Q 027479           54 VAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTEL  132 (223)
Q Consensus        54 ~~~~~~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vlf~ky~G~eV  132 (223)
                      ..+.++++.|+.|||||++.++++||+|||+||+++++|.++|+|+|||||.++..+. +|.+||+||+|+|++|+|++|
T Consensus         4 ~~~~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt~V   83 (104)
T KOG1641|consen    4 TSWEIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGTKV   83 (104)
T ss_pred             hhhhhhhhccccceeeeeeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCcEE
Confidence            3457889999999999999999999999999999999999999999999999987765 899999999999999999999


Q ss_pred             EEcC-eeeEEEeccceeeee
Q 027479          133 EFNG-ANHLILREDDVVGIL  151 (223)
Q Consensus       133 ~~dg-~~y~ilre~DIlaii  151 (223)
                      ++++ ++|++++++|+|+++
T Consensus        84 ~l~~~~~~~~fr~e~~l~~~  103 (104)
T KOG1641|consen   84 KLGDEDEYHLFRDEDDLLAI  103 (104)
T ss_pred             eccCCceeEEecchhhhhhh
Confidence            9974 699999999998875

>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=4.2e-23  Score=160.03  Aligned_cols=65  Identities=38%  Similarity=0.606  Sum_probs=61.2

Q ss_pred             CceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccCC-------------ceeecCCCCcEEEec
Q 027479          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGG-------------PILFAAFPNTCITNN  221 (223)
Q Consensus       157 ~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~~-------------~V~~~~~~Gt~i~~~  221 (223)
                      |+|+||+|||||++.++|++|+|||+||++|+|||+.|+|||||+|..++             .|+|++|+||+++++
T Consensus         1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~d   78 (96)
T COG0234           1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKID   78 (96)
T ss_pred             CCceecCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEEC
Confidence            57999999999999999999999999999999999999999999987654             489999999999986

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=99.88  E-value=7.4e-23  Score=160.14  Aligned_cols=71  Identities=25%  Similarity=0.401  Sum_probs=65.1

Q ss_pred             eecCccCceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccC--------CceeecCCCCcEEEec
Q 027479          151 LETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFG--------GPILFAAFPNTCITNN  221 (223)
Q Consensus       151 i~~d~~~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~--------~~V~~~~~~Gt~i~~~  221 (223)
                      +....+++|+||+||||||+.++|++|+|||+||+++++||++|+|+|||+|..+        ++|+|++|+||+|+++
T Consensus         4 ~~~~~~~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~~~~~Vk~GD~Vl~~~y~Gtevk~d   82 (100)
T PTZ00414          4 FTVPALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKDWTPTVKVGDTVLLPEFGGSSVKVE   82 (100)
T ss_pred             ccccccccceecCCEEEEEEcccccccccCEEcccccccCCceeEEEEECCCCccccceecCCCEEEEcCCCCcEEEEC
Confidence            4456788999999999999999999999999999999999999999999999653        4799999999999986

>PRK14533 groES co-chaperonin GroES; Provisional

Probab=99.85  E-value=2e-21  Score=149.65  Aligned_cols=65  Identities=31%  Similarity=0.512  Sum_probs=60.3

Q ss_pred             CceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCcc--------CCceeecCCCCcEEEec
Q 027479          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKF--------GGPILFAAFPNTCITNN  221 (223)
Q Consensus       157 ~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~--------~~~V~~~~~~Gt~i~~~  221 (223)
                      ++|+||+|||||++.++|++|+|||+||+++++|++.|+|+|||||..        ++.|+|++|+|++|+++
T Consensus         1 ~~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~~~~~~~Vk~GD~Vl~~~y~g~ev~~~   73 (91)
T PRK14533          1 MKVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDDEEDFDIKVGDKVIFSKYAGTEIKID   73 (91)
T ss_pred             CCceEcCCEEEEEEccccceecccEEecccccCCcceEEEEEECCCCccccccccCCCEEEEccCCCeEEEEC
Confidence            479999999999999999999999999999999999999999999863        24699999999999986

>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1e-21  Score=153.61  Aligned_cols=72  Identities=35%  Similarity=0.386  Sum_probs=66.9

Q ss_pred             eeecCccCceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccCC-------------ceeecCCCCc
Q 027479          150 ILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGG-------------PILFAAFPNT  216 (223)
Q Consensus       150 ii~~d~~~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~~-------------~V~~~~~~Gt  216 (223)
                      +...+++++++|++|||||++++++++|+|||+||+.+++|+++|+|+|||||.+++             +||||+|+||
T Consensus         2 ~~~~~~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt   81 (104)
T KOG1641|consen    2 ISTSWEIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGT   81 (104)
T ss_pred             cchhhhhhhhccccceeeeeeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCc
Confidence            445678999999999999999999999999999999999999999999999999875             5999999999


Q ss_pred             EEEec
Q 027479          217 CITNN  221 (223)
Q Consensus       217 ~i~~~  221 (223)
                      +|++.
T Consensus        82 ~V~l~   86 (104)
T KOG1641|consen   82 KVKLG   86 (104)
T ss_pred             EEecc
Confidence            99874

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=99.84  E-value=4.3e-21  Score=148.39  Aligned_cols=65  Identities=40%  Similarity=0.597  Sum_probs=60.5

Q ss_pred             CceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccC-------------CceeecCCCCcEEEec
Q 027479          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFG-------------GPILFAAFPNTCITNN  221 (223)
Q Consensus       157 ~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~-------------~~V~~~~~~Gt~i~~~  221 (223)
                      ++|+||+|||||++.++|++|+|||+||+++++|+++|+|+|||||.++             +.|+|++|+|++|+++
T Consensus         1 ~~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~   78 (95)
T PRK00364          1 MNLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKID   78 (95)
T ss_pred             CcceEcCCEEEEEEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEEC
Confidence            4699999999999999999999999999999999999999999999763             3599999999999986

>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

Probab=99.81  E-value=3e-20  Score=143.08  Aligned_cols=64  Identities=39%  Similarity=0.630  Sum_probs=59.5

Q ss_pred             ceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccC-------------CceeecCCCCcEEEec
Q 027479          158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFG-------------GPILFAAFPNTCITNN  221 (223)
Q Consensus       158 ~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~-------------~~V~~~~~~Gt~i~~~  221 (223)
                      +|+||+|||||++.++|++|+|||+||+++++|++.|+|+|||||..+             +.|+|++|+|++|+++
T Consensus         1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~   77 (93)
T cd00320           1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLD   77 (93)
T ss_pred             CceecCCEEEEEEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEEC
Confidence            489999999999999999999999999999999999999999999642             3699999999999986

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.

>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []

Probab=99.76  E-value=1.1e-18  Score=133.90  Aligned_cols=64  Identities=41%  Similarity=0.664  Sum_probs=57.3

Q ss_pred             ceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccCC-------------ceeecCCCCcEEEec
Q 027479          158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGG-------------PILFAAFPNTCITNN  221 (223)
Q Consensus       158 ~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~~-------------~V~~~~~~Gt~i~~~  221 (223)
                      +|+||+|||||++.+++++|+|||+||+++++++++|+|||||+|.+++             .|+|++|+|++|++|
T Consensus         1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~   77 (93)
T PF00166_consen    1 KIKPLGDRVLVKKIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFD   77 (93)
T ss_dssp             EEEESTTEEEEEECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEET
T ss_pred             CceecCCEEEEEEccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEEC
Confidence            5899999999999999999999999999999999999999999987542             599999999999985

These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....

>COG1329 Transcriptional regulators, similar to M

Probab=81.42  E-value=1.2  Score=38.18  Aligned_cols=52  Identities=21%  Similarity=0.478  Sum_probs=36.7

Q ss_pred             ecccCCcEEEecCCC-ce--EE---EEcC--eeeEEE--eccceeeeeecCcc--CceeecCCe
Q 027479          114 ISVKPGTQVIYSKYA-GT--EL---EFNG--ANHLIL--REDDVVGILETDEI--KDLKPLNDR  165 (223)
Q Consensus       114 ~~VkvGD~Vlf~ky~-G~--eV---~~dg--~~y~il--re~DIlaii~~d~~--~~l~PL~DR  165 (223)
                      +..|+||+|+|+-++ |+  .+   +++|  .+|+++  .++|....+..+.+  -.|+|+-|+
T Consensus         3 ~~Fk~Gd~VVYP~HGvG~I~~Ieeke~~Ge~~~yyVI~f~~~dm~v~VP~~ka~~~GiR~v~~~   66 (166)
T COG1329           3 MAFKIGDHVVYPAHGVGIIQAIEEKEIAGETLEYYVIDFPQSDMTVMVPVAKADSVGLRPVVDQ   66 (166)
T ss_pred             ccccCCCEEEecCCCceeeehhhhHhhcCceeEEEEEEEcCCCcEEEeeccchhhcCChhhhhh
Confidence            567999999999998 42  12   2444  577776  57888888876544  368888776

xanthus CarD [Transcription]

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
1we3_O	100	Crystal Structure Of The Chaperonin Complex Cpn60CP		1e-17
1we3_O	100	Crystal Structure Of The Chaperonin Complex Cpn60CP		6e-04
1wnr_A	94	Crystal Structure Of The Cpn10 From Thermus Thermop		2e-17
1wnr_A	94	Crystal Structure Of The Cpn10 From Thermus Thermop		6e-04
1hx5_A	99	Crystal Structure Of M. Tuberculosis Chaperonin-10		1e-15
1hx5_A	99	Crystal Structure Of M. Tuberculosis Chaperonin-10		1e-04
1lep_A	99	Three-Dimensional Structure Of The Immunodominant H		7e-15
3nx6_A	95	Crystal Structure Of Co-Chaperonin, Groes (Xoo4289)		2e-14
3nx6_A	95	Crystal Structure Of Co-Chaperonin, Groes (Xoo4289)		2e-04
1aon_O	97	Crystal Structure Of The Asymmetric Chaperonin Comp		9e-10

>pdb|1WE3|O Chain O, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 100

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 59  TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVK 117
           T IKPLGDRV+VK    E KT GGI LP  A+ KPQ G+V+AVG G+ +    ++ + VK
Sbjct: 6   TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVK 65
Query: 118 PGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
            G  V+++KY GTE+E +G  ++IL E D++ +L+
Sbjct: 66  EGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 100

>pdb|1WE3|O Chain O, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 100

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMV-------------RVVNFCKFG 205
           +KPL DRV +K  E E  T GG++L + +KEKP  G V             RV    K G
Sbjct: 8   IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEG 67
Query: 206 GPILFAAFPNTCI 218
             ++FA +  T I
Sbjct: 68  DIVVFAKYGGTEI 80

>pdb|1WNR|A Chain A, Crystal Structure Of The Cpn10 From Thermus Thermophilus Hb8 Length = 94

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPG 119
           IKPLGDRV+VK    E KT GGI LP  A+ KPQ G+V+AVG G+ +    ++ + VK G
Sbjct: 2   IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEG 61
Query: 120 TQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
             V+++KY GTE+E +G  ++IL E D++ +L+
Sbjct: 62  DIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 94

>pdb|1WNR|A Chain A, Crystal Structure Of The Cpn10 From Thermus Thermophilus Hb8 Length = 94

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMV-------------RVVNFCKFG 205
           +KPL DRV +K  E E  T GG++L + +KEKP  G V             RV    K G
Sbjct: 2   IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEG 61
Query: 206 GPILFAAFPNTCI 218
             ++FA +  T I
Sbjct: 62  DIVVFAKYGGTEI 74

>pdb|1HX5|A Chain A, Crystal Structure Of M. Tuberculosis Chaperonin-10 Length = 99

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKT--VGKAKLDISVK 117
           +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V 
Sbjct: 4   NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 63
Query: 118 PGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
            G  VIYSKY GTE+++NG  +LIL   DV+ ++
Sbjct: 64  EGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 97

>pdb|1HX5|A Chain A, Crystal Structure Of M. Tuberculosis Chaperonin-10 Length = 99

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKF 204
           ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V  V   ++
Sbjct: 4   NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRW 50

>pdb|1LEP|A Chain A, Three-Dimensional Structure Of The Immunodominant Heat- Shock Protein Chaperonin-10 Of Mycobacterium Leprae Length = 99

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 61  IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKT--VGKAKLDISVKP 118
           IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G  ++ + V  
Sbjct: 5   IKPLEDKILVQAGEAETMTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDVSE 64
Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
           G  VIYSKY GTE+++NG  +LIL   DV+ ++
Sbjct: 65  GDIVIYSKYGGTEIKYNGEEYLILSARDVLAVV 97

>pdb|3NX6|A Chain A, Crystal Structure Of Co-Chaperonin, Groes (Xoo4289) From Xanthomonas Oryzae Pv. Oryzae Kacc10331 Length = 95

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDIS-VKP 118
           SIKPL DRV+VK    +E + GGI +P +A+ K   GEVVA+G GK +    L    VK 
Sbjct: 2   SIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPVVKV 61
Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
           G +VIY +YAG+  +  G  + +LREDD++ ++
Sbjct: 62  GDKVIYGQYAGSSYKSEGVEYKVLREDDILAVI 94

>pdb|3NX6|A Chain A, Crystal Structure Of Co-Chaperonin, Groes (Xoo4289) From Xanthomonas Oryzae Pv. Oryzae Kacc10331 Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCK 203
           +KPL+DRV +K  EA+E +AGG+++ +++KEK + G V  +   K
Sbjct: 3   IKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGK 47

>pdb|1AON|O Chain O, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 97

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKP 118
           +I+PL DRV+VK K VE K+ GGI L  +A  K   GEV+AVG G+ +   ++  + VK 
Sbjct: 2   NIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKV 61
Query: 119 GTQVIYSKYAGTELE-FNGANHLILREDDVVGILE 152
           G  VI++   G + E  +    LI+ E D++ I+E
Sbjct: 62  GDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVE 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	9e-37
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	1e-11
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	2e-36
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	2e-11
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	3e-35
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	1e-11
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	1e-33
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	2e-11

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A Length = 99

 Score =  123 bits (311), Expect = 9e-37
 Identities = 41/95 (43%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTV--GKAKLDISVK 117
           +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V 
Sbjct: 4   NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 63

Query: 118 PGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
            G  VIYSKY GTE+++NG  +LIL   DV+ ++ 
Sbjct: 64  EGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVS 98

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A Length = 99

 Score = 58.3 bits (142), Expect = 1e-11
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMV 196
           +KPL D++ ++  EAE TTA GL++ + +KEKP  G V
Sbjct: 5   IKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTV 42

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A Length = 100

 Score =  122 bits (309), Expect = 2e-36
 Identities = 44/94 (46%), Positives = 63/94 (67%), Gaps = 1/94 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
            IKPLGDRV+VK    E KT GGI LP  A+ KPQ G+V+AVG G+ +   +   + VK 
Sbjct: 7   VIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKE 66

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
           G  V+++KY GTE+E +G  ++IL E D++ +L+
Sbjct: 67  GDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 100

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A Length = 100

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVV 199
           +KPL DRV +K  E E  T GG++L + +KEKP  G V  V
Sbjct: 8   IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAV 48

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} Length = 95

 Score =  119 bits (301), Expect = 3e-35
 Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
           SIKPL DRV+VK    +E + GGI +P +A+ K   GEVVA+G GK +    L    VK 
Sbjct: 2   SIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPVVKV 61

Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
           G +VIY +YAG+  +  G  + +LREDD++ ++
Sbjct: 62  GDKVIYGQYAGSSYKSEGVEYKVLREDDILAVI 94

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} Length = 95

 Score = 57.9 bits (141), Expect = 1e-11
 Identities = 18/38 (47%), Positives = 30/38 (78%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMV 196
           +KPL+DRV +K  EA+E +AGG+++ +++KEK + G V
Sbjct: 3   IKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEV 40

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O Length = 97

 Score =  115 bits (290), Expect = 1e-33
 Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
           +I+PL DRV+VK K VE K+ GGI L  +A  K   GEV+AVG G+ +   ++  + VK 
Sbjct: 2   NIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKV 61

Query: 119 GTQVIYSK-YAGTELEFNGANHLILREDDVVGILE 152
           G  VI++  Y     + +    LI+ E D++ I+E
Sbjct: 62  GDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVE 96

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O Length = 97

 Score = 57.5 bits (140), Expect = 2e-11
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMV 196
           ++PL+DRV +K  E E  +AGG++LT ++  K + G V
Sbjct: 3   IRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEV 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	100.0
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	100.0
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	100.0
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	100.0
1g31_A	111	GP31; chaperone, CO-chaperonin, groes, in VIVO pro	99.92
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	99.89
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	99.88
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	99.88
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	99.88
1g31_A	111	GP31; chaperone, CO-chaperonin, groes, in VIVO pro	99.66

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=100.00  E-value=5.2e-37  Score=236.69  Aligned_cols=94  Identities=43%  Similarity=0.703  Sum_probs=70.9

Q ss_pred             ccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCC-eeeecccCCcEEEecCCCceEEEEcCe
Q 027479           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGA  137 (223)
Q Consensus        59 ~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~-~vp~~VkvGD~Vlf~ky~G~eV~~dg~  137 (223)
                      ++|+||+||||||+.++|++|+|||+||+++++||++|+|||||+|+..+++ .+|++||+||+|+|++|+|+||++||+
T Consensus         1 m~i~PL~DRVlVk~~e~e~kT~gGI~LP~~a~eK~~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~~ky~Gtevk~dg~   80 (95)
T 3nx6_A            1 MSIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYGQYAGSSYKSEGV   80 (95)
T ss_dssp             -CCCCCTTEEEEEEC-------------------CEEEEEEEECSCEECTTSCEECCSCCTTCEEEECTTCSEEEEETTE
T ss_pred             CCeEEcCCEEEEEEccccccccceEEeCccccCCccccEEEEECCCeECCCCCEEccccCCCCEEEECCcCCeEEEECCE
Confidence            5799999999999999999999999999999999999999999999998876 489999999999999999999999999


Q ss_pred             eeEEEeccceeeeee
Q 027479          138 NHLILREDDVVGILE  152 (223)
Q Consensus       138 ~y~ilre~DIlaii~  152 (223)
                      +|+|+||+||||+++
T Consensus        81 ey~i~re~DILavie   95 (95)
T 3nx6_A           81 EYKVLREDDILAVIG   95 (95)
T ss_dssp             EEEEEEGGGEEEECC
T ss_pred             EEEEEEHHHEEEEeC
Confidence            999999999999985

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A

Probab=100.00  E-value=1.6e-36  Score=235.52  Aligned_cols=94  Identities=43%  Similarity=0.763  Sum_probs=90.2

Q ss_pred             ccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCC--eeeecccCCcEEEecCCCceEEEEcC
Q 027479           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA--KLDISVKPGTQVIYSKYAGTELEFNG  136 (223)
Q Consensus        59 ~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~--~vp~~VkvGD~Vlf~ky~G~eV~~dg  136 (223)
                      ++|+||+||||||+.++|++|+|||+||+++++||++|+|||||+|+.++++  .+|++||+||+|+|++|+|+||++||
T Consensus         3 ~~i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~~p~~VkvGD~Vlf~ky~Gtevk~dg   82 (99)
T 1p3h_A            3 VNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNG   82 (99)
T ss_dssp             CEEEECTTEEEEEECCCCCBCTTSCBCCCSSCCSEEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEETT
T ss_pred             ceeEEeCCEEEEEEccccccccceEEeCcccccCCceEEEEEECCCcCcCCCCEEEccccCCCCEEEECCcCCeEEEECC
Confidence            6899999999999999999999999999999999999999999999987765  48999999999999999999999999


Q ss_pred             eeeEEEeccceeeeee
Q 027479          137 ANHLILREDDVVGILE  152 (223)
Q Consensus       137 ~~y~ilre~DIlaii~  152 (223)
                      ++|+|+||+||||+++
T Consensus        83 eey~i~re~DIlavi~   98 (99)
T 1p3h_A           83 EEYLILSARDVLAVVS   98 (99)
T ss_dssp             EEEEEEEGGGEEEEEE
T ss_pred             EEEEEEEhHhEEEEee
Confidence            9999999999999986

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O

Probab=100.00  E-value=2.3e-36  Score=233.89  Aligned_cols=94  Identities=39%  Similarity=0.647  Sum_probs=90.0

Q ss_pred             ccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCC-eeeecccCCcEEEecC-CCceEEEEcC
Q 027479           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSK-YAGTELEFNG  136 (223)
Q Consensus        59 ~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~-~vp~~VkvGD~Vlf~k-y~G~eV~~dg  136 (223)
                      ++|+||+||||||+.++|++|+|||+||+++++||++|+|||||+|+.++++ .+|++||+||+|+|++ |+|+||++||
T Consensus         1 ~~i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf~k~y~Gtevk~dg   80 (97)
T 1pcq_O            1 MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDN   80 (97)
T ss_dssp             CEEEECSSEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSEECTTSSSCEECSCCTTCEEEECCCSSCEEEEETT
T ss_pred             CCceEcCCEEEEEEccccccccceEEeCcccccCCcccEEEEEcCceecCCCCEEecccCCCCEEEECCccCCeEEEECC
Confidence            4799999999999999999999999999999999999999999999987766 4899999999999999 9999999999


Q ss_pred             eeeEEEeccceeeeee
Q 027479          137 ANHLILREDDVVGILE  152 (223)
Q Consensus       137 ~~y~ilre~DIlaii~  152 (223)
                      ++|+|+||+||||+++
T Consensus        81 eey~i~re~DIlavv~   96 (97)
T 1pcq_O           81 EEVLIMSESDILAIVE   96 (97)
T ss_dssp             EEEEEEEGGGEEEEEE
T ss_pred             EEEEEEEhHHEEEEec
Confidence            9999999999999987

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A

Probab=100.00  E-value=1.6e-36  Score=235.85  Aligned_cols=94  Identities=48%  Similarity=0.836  Sum_probs=89.7

Q ss_pred             ccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCC-eeeecccCCcEEEecCCCceEEEEcCe
Q 027479           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGA  137 (223)
Q Consensus        59 ~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~-~vp~~VkvGD~Vlf~ky~G~eV~~dg~  137 (223)
                      ++|+||+||||||+.++|++|+|||+||+++++||++|+|||||+|+..+++ .+|++||+||+|+|++|+|+||++||+
T Consensus         6 ~~i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf~ky~Gtevk~dge   85 (100)
T 1we3_O            6 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGE   85 (100)
T ss_dssp             CCEEECTTCEEEEECCCCSSCTTCCCCCTTTSCCCSEEEESCCCCCEECTTSCEECCSCCTTCEEEECTTCSEEEECSSC
T ss_pred             ceeEEeCCEEEEEEccccccccceEEeCcccccCCcCCEEEEECCCcCCCCCCEEeeecCCCCEEEECCCCCeEEEECCE
Confidence            4599999999999999999999999999999999999999999999987766 489999999999999999999999999


Q ss_pred             eeEEEeccceeeeee
Q 027479          138 NHLILREDDVVGILE  152 (223)
Q Consensus       138 ~y~ilre~DIlaii~  152 (223)
                      +|+|+||+||||+++
T Consensus        86 eyli~re~DIlavi~  100 (100)
T 1we3_O           86 EYVILSERDLLAVLQ  100 (100)
T ss_dssp             EEEEECTTTEEEEEC
T ss_pred             EEEEEEhHHEEEEeC
Confidence            999999999999985

>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O

Probab=99.92  E-value=2.2e-26  Score=181.85  Aligned_cols=88  Identities=14%  Similarity=0.144  Sum_probs=80.4

Q ss_pred             ccccccCCeEEEEecc----ccccccceEEecCC-CCCCCcceEEEEecCceecCCCeeeecccCCcEEEec--CCC---
Q 027479           59 TSIKPLGDRVLVKIKT----VEEKTDGGIFLPSA-AQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS--KYA---  128 (223)
Q Consensus        59 ~~lkPLgDRVLVk~~e----~e~kT~gGIiLP~s-a~~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~--ky~---  128 (223)
                      ++|+||+|||||++.+    +|++|+|||+||++ +++||+.|+|||||+|+      .++.||+||+|+|+  +|+   
T Consensus         7 m~ikPL~drVlvk~~~~~~~~E~kT~sGIilp~~aakekp~~g~VvAVG~g~------~~~~vKvGD~Vl~~kg~~~nvp   80 (111)
T 1g31_A            7 LPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDV------PEGFCEVGDLTSLPVGQIRNVP   80 (111)
T ss_dssp             CSCEECTTEEEEEECSSCGGGCTTSCTTCCCCHHHHHHSEEEEEEEEECTTS------CTTSCCTTCEEEEEGGGCEEEC
T ss_pred             cCceecCCEEEEEEcccCCCcceEcCCcEEeCCCccccCCceEEEEEECCCC------ccccccCCCEEEECCCccccCC
Confidence            7899999999999988    79999999999999 69999999999999997      34679999999995  477   


Q ss_pred             -----ceEEEEcC--eeeEEEeccceeeeee
Q 027479          129 -----GTELEFNG--ANHLILREDDVVGILE  152 (223)
Q Consensus       129 -----G~eV~~dg--~~y~ilre~DIlaii~  152 (223)
                           |.+++.++  ++|++++++||+|+++
T Consensus        81 ~p~vi~g~i~~~~~~e~y~i~~~~dIlavy~  111 (111)
T 1g31_A           81 HPFVALGLKQPKEIKQKFVTCHYKAIPCLYK  111 (111)
T ss_dssp             CHHHHTTSSCGGGCCCCEEEEEGGGCCEECC
T ss_pred             CcceeeeEEccCCcccEEEEEehHHeEEEeC
Confidence                 78999999  9999999999999873

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=99.89  E-value=8.7e-24  Score=162.88  Aligned_cols=65  Identities=29%  Similarity=0.543  Sum_probs=41.4

Q ss_pred             CceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccC-------------CceeecCCCCcEEEec
Q 027479          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFG-------------GPILFAAFPNTCITNN  221 (223)
Q Consensus       157 ~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~-------------~~V~~~~~~Gt~i~~~  221 (223)
                      |+|+||+||||||+.++|++|+|||+||++++|||++|+|||||||..+             ++|+|++|+||+|+++
T Consensus         1 m~i~PL~DRVlVk~~e~e~kT~gGI~LP~~a~eK~~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~~ky~Gtevk~d   78 (95)
T 3nx6_A            1 MSIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYGQYAGSSYKSE   78 (95)
T ss_dssp             -CCCCCTTEEEEEEC-------------------CEEEEEEEECSCEECTTSCEECCSCCTTCEEEECTTCSEEEEET
T ss_pred             CCeEEcCCEEEEEEccccccccceEEeCccccCCccccEEEEECCCeECCCCCEEccccCCCCEEEECCcCCeEEEEC
Confidence            5799999999999999999999999999999999999999999999764             2589999999999986

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O

Probab=99.88  E-value=2.2e-23  Score=161.13  Aligned_cols=65  Identities=28%  Similarity=0.448  Sum_probs=60.8

Q ss_pred             CceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccCC-------------ceeecC-CCCcEEEec
Q 027479          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGG-------------PILFAA-FPNTCITNN  221 (223)
Q Consensus       157 ~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~~-------------~V~~~~-~~Gt~i~~~  221 (223)
                      |+|+||+||||||+.++|++|+|||+||++++|||++|+|||||||..++             +|+|++ |+||+|+++
T Consensus         1 ~~i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf~k~y~Gtevk~d   79 (97)
T 1pcq_O            1 MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKID   79 (97)
T ss_dssp             CEEEECSSEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSEECTTSSSCEECSCCTTCEEEECCCSSCEEEEET
T ss_pred             CCceEcCCEEEEEEccccccccceEEeCcccccCCcccEEEEEcCceecCCCCEEecccCCCCEEEECCccCCeEEEEC
Confidence            57999999999999999999999999999999999999999999996543             599999 999999986

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A

Probab=99.88  E-value=3.2e-23  Score=160.76  Aligned_cols=65  Identities=34%  Similarity=0.625  Sum_probs=60.7

Q ss_pred             CceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccC--------------CceeecCCCCcEEEec
Q 027479          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFG--------------GPILFAAFPNTCITNN  221 (223)
Q Consensus       157 ~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~--------------~~V~~~~~~Gt~i~~~  221 (223)
                      ++|+||+||||||+.++|++|+|||+||++++|||++|+|||||||.++              ++|+|++|+||+|+++
T Consensus         3 ~~i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~~p~~VkvGD~Vlf~ky~Gtevk~d   81 (99)
T 1p3h_A            3 VNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYN   81 (99)
T ss_dssp             CEEEECTTEEEEEECCCCCBCTTSCBCCCSSCCSEEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEET
T ss_pred             ceeEEeCCEEEEEEccccccccceEEeCcccccCCceEEEEEECCCcCcCCCCEEEccccCCCCEEEECCcCCeEEEEC
Confidence            6899999999999999999999999999999999999999999999653              2589999999999986

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A

Probab=99.88  E-value=2.1e-23  Score=162.12  Aligned_cols=65  Identities=37%  Similarity=0.534  Sum_probs=60.5

Q ss_pred             CceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccCC-------------ceeecCCCCcEEEec
Q 027479          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGG-------------PILFAAFPNTCITNN  221 (223)
Q Consensus       157 ~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~~-------------~V~~~~~~Gt~i~~~  221 (223)
                      ++|+||+||||||+.++|++|+|||+||++++|||++|+|||||||..++             +|+|++|+||+|+++
T Consensus         6 ~~i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf~ky~Gtevk~d   83 (100)
T 1we3_O            6 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEID   83 (100)
T ss_dssp             CCEEECTTCEEEEECCCCSSCTTCCCCCTTTSCCCSEEEESCCCCCEECTTSCEECCSCCTTCEEEECTTCSEEEECS
T ss_pred             ceeEEeCCEEEEEEccccccccceEEeCcccccCCcCCEEEEECCCcCCCCCCEEeeecCCCCEEEECCCCCeEEEEC
Confidence            45999999999999999999999999999999999999999999996532             599999999999986

>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O

Probab=99.66  E-value=1.2e-17  Score=131.89  Aligned_cols=58  Identities=19%  Similarity=0.260  Sum_probs=51.7

Q ss_pred             CceeecCCeEEEEEec----ccccccceeEeecC-ccCCCceeEEEEeeCCcc------CCceeec--CCC
Q 027479          157 KDLKPLNDRVFIKVAE----AEETTAGGLLLTEA-SKEKPSIGMVRVVNFCKF------GGPILFA--AFP  214 (223)
Q Consensus       157 ~~l~PL~DRVLVk~~~----~e~~T~gGi~Lp~~-a~ek~~~G~VVAVG~G~~------~~~V~~~--~~~  214 (223)
                      ++|+||+|||||++.+    .|++|+|||+||++ ++|||+.|+|||||||..      ++.|+|+  +|+
T Consensus         7 m~ikPL~drVlvk~~~~~~~~E~kT~sGIilp~~aakekp~~g~VvAVG~g~~~~~vKvGD~Vl~~kg~~~   77 (111)
T 1g31_A            7 LPIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPEGFCEVGDLTSLPVGQIR   77 (111)
T ss_dssp             CSCEECTTEEEEEECSSCGGGCTTSCTTCCCCHHHHHHSEEEEEEEEECTTSCTTSCCTTCEEEEEGGGCE
T ss_pred             cCceecCCEEEEEEcccCCCcceEcCCcEEeCCCccccCCceEEEEEECCCCccccccCCCEEEECCCccc
Confidence            6899999999999988    78999999999999 699999999999999964      3579994  455

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d1p3ha_	99	b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium	8e-31
d1p3ha_	99	b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium	3e-08
d1aono_	97	b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia c	4e-29
d1aono_	97	b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia c	4e-10
d1we3o_	96	b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus therm	6e-29
d1we3o_	96	b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus therm	1e-07

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  107 bits (268), Expect = 8e-31
 Identities = 41/95 (43%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTV--GKAKLDISVK 117
           +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V 
Sbjct: 4   NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 63

Query: 118 PGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
            G  VIYSKY GTE+++NG  +LIL   DV+ ++ 
Sbjct: 64  EGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVS 98

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 19/43 (44%), Positives = 29/43 (67%)

Query: 158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVN 200
           ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V  V 
Sbjct: 4   NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVG 46

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (256), Expect = 4e-29
 Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 60  SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKP 118
           +I+PL DRV+VK K VE K+ GGI L  +A  K   GEV+AVG G+ +   ++  + VK 
Sbjct: 2   NIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKV 61

Query: 119 GTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 152
           G  VI++   G +  + +    LI+ E D++ I+E
Sbjct: 62  GDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVE 96

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (127), Expect = 4e-10
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCK 203
           ++PL+DRV +K  E E  +AGG++LT ++  K + G V  V   +
Sbjct: 3   IRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGR 47

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]} Length = 96

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

 Score =  102 bits (255), Expect = 6e-29
 Identities = 45/95 (47%), Positives = 64/95 (67%), Gaps = 1/95 (1%)

Query: 59  TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVK 117
           T IKPLGDRV+VK    E KT GGI LP  A+ KPQ G+V+AVG G+ +   +   + VK
Sbjct: 2   TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVK 61

Query: 118 PGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
            G  V+++KY GTE+E +G  ++IL E D++ +L+
Sbjct: 62  EGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 96

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]} Length = 96

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

 Score = 46.1 bits (109), Expect = 1e-07
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVV 199
           +KPL DRV +K  E E  T GG++L + +KEKP  G V  V
Sbjct: 4   IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAV 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	99.97
d1aono_	97	Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56	99.97
d1we3o_	96	Chaperonin-10 (GroES) {Thermus thermophilus [TaxId	99.97
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	99.79
d1we3o_	96	Chaperonin-10 (GroES) {Thermus thermophilus [TaxId	99.75
d1aono_	97	Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56	99.75
d1g31a_	107	GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665	95.52
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.89
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	87.96
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	86.16
d1g31a_	107	GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665	81.43

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=4.9e-32  Score=206.95  Aligned_cols=94  Identities=43%  Similarity=0.763  Sum_probs=89.6

Q ss_pred             ccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCC--eeeecccCCcEEEecCCCceEEEEcC
Q 027479           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA--KLDISVKPGTQVIYSKYAGTELEFNG  136 (223)
Q Consensus        59 ~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~--~vp~~VkvGD~Vlf~ky~G~eV~~dg  136 (223)
                      ++|+||+|||||++.+.+++|+|||+||++++++++.|+|+|||+|+...++  .+|+.||+||+|+|++|+|++|++||
T Consensus         3 m~ikPlgdrVLVk~~~~~~kT~gGIiLp~~~~~~~~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~~~g~~v~~dg   82 (99)
T d1p3ha_           3 VNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNG   82 (99)
T ss_dssp             CEEEECTTEEEEEECCCCCBCTTSCBCCCSSCCSEEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEETT
T ss_pred             ccceEcCCEEEEEEcchhcccccceEeccccccCceEEEEEEECCceEcCCCCEecCCeeecCCEEEEcccCceEEEECC
Confidence            6899999999999999999999999999999999999999999999986664  37899999999999999999999999


Q ss_pred             eeeEEEeccceeeeee
Q 027479          137 ANHLILREDDVVGILE  152 (223)
Q Consensus       137 ~~y~ilre~DIlaii~  152 (223)
                      ++|++++++||+|+++
T Consensus        83 ~~y~ii~e~dIlavi~   98 (99)
T d1p3ha_          83 EEYLILSARDVLAVVS   98 (99)
T ss_dssp             EEEEEEEGGGEEEEEE
T ss_pred             EEEEEEEHHHEEEEEe
Confidence            9999999999999996

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.3e-31  Score=203.33  Aligned_cols=95  Identities=39%  Similarity=0.626  Sum_probs=88.2

Q ss_pred             ccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCC-eeeecccCCcEEEecCCCce-EEEEcC
Q 027479           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGT-ELEFNG  136 (223)
Q Consensus        59 ~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~-~vp~~VkvGD~Vlf~ky~G~-eV~~dg  136 (223)
                      |+|+||+|||||++.+.+++|+|||+||++++++++.|+|+|||+|....++ .+|+.||+||+|+|++|+|. .+++||
T Consensus         1 m~ikPlgdrVLVk~~~~e~kT~gGIiLp~~~~~~~~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~~~~~dg   80 (97)
T d1aono_           1 MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDN   80 (97)
T ss_dssp             CCEEECTTEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSBCCTTSSCCCBCSCCTTCEEEECCCSSCEEEESSS
T ss_pred             CCceEcCCEEEEEEcccccEecceEEECCccccCceeEEEEEEeeeEEccCCcCccccCCCCCEEEEecccCceEEEECC
Confidence            5799999999999999999999999999999999999999999999987665 47899999999999998875 578999


Q ss_pred             eeeEEEeccceeeeeec
Q 027479          137 ANHLILREDDVVGILET  153 (223)
Q Consensus       137 ~~y~ilre~DIlaii~~  153 (223)
                      ++|++++++||+|+++.
T Consensus        81 ~~y~ii~e~dIlavie~   97 (97)
T d1aono_          81 EEVLIMSESDILAIVEA   97 (97)
T ss_dssp             CEEEEEETTTEEEEECC
T ss_pred             EEEEEEEHHHEEEEEeC
Confidence            99999999999999974

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=1.4e-31  Score=203.26  Aligned_cols=94  Identities=48%  Similarity=0.836  Sum_probs=89.4

Q ss_pred             ccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCC-eeeecccCCcEEEecCCCceEEEEcCe
Q 027479           59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGA  137 (223)
Q Consensus        59 ~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~-~vp~~VkvGD~Vlf~ky~G~eV~~dg~  137 (223)
                      ++|+||+|||||++.+++++|+||||||++++++++.|+|+|+|+|....++ .+|+.+++||+|+|++|+|++|++||+
T Consensus         2 ~~ikPlgdrVLVk~~~~~~kT~gGIiLp~~~~~k~~~g~VvavG~g~~~~~g~~~p~~vkvGD~Vl~~~~~g~~v~~~g~   81 (96)
T d1we3o_           2 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGE   81 (96)
T ss_dssp             CCEEECTTCEEEEECCCCSSCTTCCCCCTTTSCCCSEEEESCCCCCEECTTSCEECCSCCTTCEEEECTTCSEEEECSSC
T ss_pred             CcceEcCCEEEEEEccccceecccEEecccccccceEEEEeeecceEecCCCCEEEeeEEeCCEEEEccCCCcEEEECCE
Confidence            5799999999999999999999999999999999999999999999987665 489999999999999999999999999


Q ss_pred             eeEEEeccceeeeee
Q 027479          138 NHLILREDDVVGILE  152 (223)
Q Consensus       138 ~y~ilre~DIlaii~  152 (223)
                      +|++++++||+|+++
T Consensus        82 ~y~ii~e~dIlavie   96 (96)
T d1we3o_          82 EYVILSERDLLAVLQ   96 (96)
T ss_dssp             EEEEECTTTEEEEEC
T ss_pred             EEEEEEHHHEEEEeC
Confidence            999999999999985

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=4.7e-20  Score=139.97  Aligned_cols=65  Identities=34%  Similarity=0.625  Sum_probs=60.6

Q ss_pred             CceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccC--------------CceeecCCCCcEEEec
Q 027479          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFG--------------GPILFAAFPNTCITNN  221 (223)
Q Consensus       157 ~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~--------------~~V~~~~~~Gt~i~~~  221 (223)
                      ++|+||+|||||++.+.+++|+|||+||+++++++..|+|||||||.++              +.|+|++|+|++|+++
T Consensus         3 m~ikPlgdrVLVk~~~~~~kT~gGIiLp~~~~~~~~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~~~g~~v~~d   81 (99)
T d1p3ha_           3 VNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYN   81 (99)
T ss_dssp             CEEEECTTEEEEEECCCCCBCTTSCBCCCSSCCSEEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEET
T ss_pred             ccceEcCCEEEEEEcchhcccccceEeccccccCceEEEEEEECCceEcCCCCEecCCeeecCCEEEEcccCceEEEEC
Confidence            5899999999999999999999999999999999999999999999653              3589999999999986

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=2.6e-19  Score=134.95  Aligned_cols=65  Identities=37%  Similarity=0.539  Sum_probs=60.3

Q ss_pred             CceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccC-------------CceeecCCCCcEEEec
Q 027479          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFG-------------GPILFAAFPNTCITNN  221 (223)
Q Consensus       157 ~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~-------------~~V~~~~~~Gt~i~~~  221 (223)
                      .+|+||+|||||++.+.+++|+|||+||++++++++.|+|+|+|+|..+             +.|+|++|+|+++++|
T Consensus         2 ~~ikPlgdrVLVk~~~~~~kT~gGIiLp~~~~~k~~~g~VvavG~g~~~~~g~~~p~~vkvGD~Vl~~~~~g~~v~~~   79 (96)
T d1we3o_           2 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEID   79 (96)
T ss_dssp             CCEEECTTCEEEEECCCCSSCTTCCCCCTTTSCCCSEEEESCCCCCEECTTSCEECCSCCTTCEEEECTTCSEEEECS
T ss_pred             CcceEcCCEEEEEEccccceecccEEecccccccceEEEEeeecceEecCCCCEEEeeEEeCCEEEEccCCCcEEEEC
Confidence            3699999999999999999999999999999999999999999999653             3599999999999987

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=7.2e-19  Score=132.50  Aligned_cols=65  Identities=28%  Similarity=0.405  Sum_probs=58.3

Q ss_pred             CceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccC-------------CceeecCCCCc-EEEec
Q 027479          157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFG-------------GPILFAAFPNT-CITNN  221 (223)
Q Consensus       157 ~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~-------------~~V~~~~~~Gt-~i~~~  221 (223)
                      |+|+||+|||||++.+.+++|+|||+||++++++++.|+|+|||||.+.             +.|+|++|+|. .+++|
T Consensus         1 m~ikPlgdrVLVk~~~~e~kT~gGIiLp~~~~~~~~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~~~~~d   79 (97)
T d1aono_           1 MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKID   79 (97)
T ss_dssp             CCEEECTTEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSBCCTTSSCCCBCSCCTTCEEEECCCSSCEEEESS
T ss_pred             CCceEcCCEEEEEEcccccEecceEEECCccccCceeEEEEEEeeeEEccCCcCccccCCCCCEEEEecccCceEEEEC
Confidence            6899999999999999999999999999999999999999999999764             35999998775 46665

>d1g31a_ b.35.1.1 (A:) GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: GP31 co-chaperonin
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.52  E-value=0.0027  Score=47.58  Aligned_cols=61  Identities=21%  Similarity=0.289  Sum_probs=47.6

Q ss_pred             cccccCCeEEEEeccc----cccccceEEecCCCC-CCCcceEEEEecCceecCCCeeeecccCCcEEEecC
Q 027479           60 SIKPLGDRVLVKIKTV----EEKTDGGIFLPSAAQ-TKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK  126 (223)
Q Consensus        60 ~lkPLgDRVLVk~~e~----e~kT~gGIiLP~sa~-~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~k  126 (223)
                      .|+-+++.|++....+    |.+|++||+|-.-.+ +-|..|+|++||+....      --.|+||.|+.+.
T Consensus         4 ~ika~~e~VI~~~~aa~aGdEi~S~~Giiig~r~qgeiPl~~~viSVG~dVpe------~~~kvG~~vlLP~   69 (107)
T d1g31a_           4 PIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPE------GFCEVGDLTSLPV   69 (107)
T ss_dssp             SCEECTTEEEEEECSSCGGGCTTSCTTCCCCHHHHHHSEEEEEEEEECTTSCT------TSCCTTCEEEEEG
T ss_pred             CccccccEEEEEeccccCCceeecccceEEEeccCCCCceeEEEEEeCCCCCH------HHhccccEEEccC
Confidence            4677899999987653    789999999954333 46889999999997532      2467999999876

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.89  E-value=0.086  Score=40.23  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             cceEEEEecCceecCCCeeeecccCCcEEEecC
Q 027479           94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK  126 (223)
Q Consensus        94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~k  126 (223)
                      ..|+|+++|++.        ..+|+||+|....
T Consensus        70 ~~G~V~~~g~~v--------~~~~~GdrV~~~~   94 (177)
T d1jvba1          70 IAGKIEEVGDEV--------VGYSKGDLVAVNP   94 (177)
T ss_dssp             EEEEEEEECTTC--------CSCCTTCEEEECC
T ss_pred             EEEEEeeeccCc--------cccccCceEeeee
Confidence            479999999875        2579999997643

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=87.96  E-value=0.37  Score=35.63  Aligned_cols=72  Identities=22%  Similarity=0.410  Sum_probs=41.1

Q ss_pred             ccCCeEEEEeccc-----cccccceEEecCCC---CCCCcceEEEEecCceecCCCeeeecccCCcEEEecC--CCceEE
Q 027479           63 PLGDRVLVKIKTV-----EEKTDGGIFLPSAA---QTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK--YAGTEL  132 (223)
Q Consensus        63 PLgDRVLVk~~e~-----e~kT~gGIiLP~sa---~~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~k--y~G~eV  132 (223)
                      |-.|.||||..-.     +-....|.+=+...   -.--..|+|+++|++..        .+|+||+|+|..  +++   
T Consensus        25 p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~--------~~~vGdrV~~~~~~~G~---   93 (147)
T d1qora1          25 PAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVK--------HIKAGDRVVYAQSALGA---   93 (147)
T ss_dssp             CCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCC--------SCCTTCEEEESCCSSCC---
T ss_pred             CCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeecc--------cccccceeeeecccccc---
Confidence            5567888887643     12222333211110   01235899999999862        589999998743  322   


Q ss_pred             EEcCeeeEEEecccee
Q 027479          133 EFNGANHLILREDDVV  148 (223)
Q Consensus       133 ~~dg~~y~ilre~DIl  148 (223)
                         -.+|..+..++++
T Consensus        94 ---~ae~~~v~~~~~~  106 (147)
T d1qora1          94 ---YSSVHNIIADKAA  106 (147)
T ss_dssp             ---SBSEEEEEGGGEE
T ss_pred             ---ceeEEEEehHHeE
Confidence               1456666655543

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.16  E-value=0.5  Score=35.18  Aligned_cols=43  Identities=28%  Similarity=0.356  Sum_probs=30.1

Q ss_pred             CcceEEEEecCceecCCCeeeecccCCcEEEecC--CCceEEEEcCeeeEEEeccceee
Q 027479           93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK--YAGTELEFNGANHLILREDDVVG  149 (223)
Q Consensus        93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~k--y~G~eV~~dg~~y~ilre~DIla  149 (223)
                      ...|+|+++|++..        .+++||+|+...  ++|      =.+|+++.++.++-
T Consensus        67 e~~G~V~~vG~~v~--------~~~vGdrV~~~~~~~G~------~ae~~~v~~~~~~~  111 (150)
T d1yb5a1          67 DVAGVIEAVGDNAS--------AFKKGDRVFTSSTISGG------YAEYALAADHTVYK  111 (150)
T ss_dssp             CEEEEEEEECTTCT--------TCCTTCEEEESCCSSCS------SBSEEEEEGGGEEE
T ss_pred             ceeeeeEeecceee--------ccccCcccccccccccc------cccccccccccccc
Confidence            35799999999852        589999997643  333      25677777766443

>d1g31a_ b.35.1.1 (A:) GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: GP31 co-chaperonin
species: Bacteriophage T4 [TaxId: 10665]

Probab=81.43  E-value=0.47  Score=35.00  Aligned_cols=48  Identities=21%  Similarity=0.288  Sum_probs=37.1

Q ss_pred             ceeecCCeEEEEEec----ccccccceeEeecCc-cCCCceeEEEEeeCCccC
Q 027479          158 DLKPLNDRVFIKVAE----AEETTAGGLLLTEAS-KEKPSIGMVRVVNFCKFG  205 (223)
Q Consensus       158 ~l~PL~DRVLVk~~~----~e~~T~gGi~Lp~~a-~ek~~~G~VVAVG~G~~~  205 (223)
                      .++-+++.|+++...    .|.+|.+||+|-... -|-|..|+|+.|||....
T Consensus         4 ~ika~~e~VI~~~~aa~aGdEi~S~~Giiig~r~qgeiPl~~~viSVG~dVpe   56 (107)
T d1g31a_           4 PIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPE   56 (107)
T ss_dssp             SCEECTTEEEEEECSSCGGGCTTSCTTCCCCHHHHHHSEEEEEEEEECTTSCT
T ss_pred             CccccccEEEEEeccccCCceeecccceEEEeccCCCCceeEEEEEeCCCCCH
Confidence            367888999887644    567999999995433 377889999999997653