Citrus Sinensis ID: 027490

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
MASMDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRLKSNEQAHNNDPLDAL
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHEEccccccccccccccccc
ccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcEEEEEEEcHHHHHHHHHHHHHHEEccccccHHccccccHHHHcccccccccccccccccc
masmdpnlntnidelvsvqsppsekpklclvwnehyppgfLRKVIAEIIATYLLVFVTCGSAalsaydehrvSKLGASVAGGLIVTVMIYAVGhisgahmnPAVTLAFAAVrhfpwkqigelagIAVGSAVCITSVlagpvsggsmnpartvgpAIASSFYKGIWVYLVGpvtgtfmgawsynmiretdkpahaispgslsFKLRRLKsneqahnndpldal
masmdpnlNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRlksneqahnndpldal
MASMDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRLKSNEQAHNNDPLDAL
**************************KLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRE***********************************
***********************************YPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDK********************************
MASMDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRLKSNEQAHNNDPLDAL
**********NIDELVSVQSPPS*KP**CLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAI***************************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MASMDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRLKSNEQAHNNDPLDAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query222 2.2.26 [Sep-21-2011]
Q19KC1295 Aquaporin NIP2-1 OS=Zea m N/A no 0.576 0.433 0.507 2e-31
Q6Z2T3298 Aquaporin NIP2-1 OS=Oryza yes no 0.468 0.348 0.605 2e-31
Q40746284 Aquaporin NIP1-1 OS=Oryza no no 0.770 0.602 0.369 6e-31
Q67WJ8298 Aquaporin NIP2-2 OS=Oryza no no 0.581 0.432 0.518 1e-30
Q9ATN2294 Aquaporin NIP2-2 OS=Zea m N/A no 0.941 0.710 0.346 4e-30
Q9AT74301 Aquaporin NIP2-3 OS=Zea m N/A no 0.590 0.435 0.496 1e-29
Q9ATN4282 Aquaporin NIP1-1 OS=Zea m N/A no 0.779 0.613 0.383 5e-28
Q8LFP7294 Aquaporin NIP1-2 OS=Arabi yes no 0.405 0.306 0.522 3e-22
Q0DK16286 Aquaporin NIP1-3 OS=Oryza no no 0.360 0.279 0.6 7e-22
Q8W036283 Probable aquaporin NIP4-2 no no 0.445 0.349 0.504 3e-21
>sp|Q19KC1|NIP21_MAIZE Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2 Back     alignment and function desciption
 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 92/134 (68%), Gaps = 6/134 (4%)

Query: 7   NLNTNIDELVSVQS---PPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAA 63
           N N  I ++ + Q+   PP+   +      + +PP  L+KV++E+++T+LLVFVTCG+A 
Sbjct: 12  NFNNEIHDIGTAQNSSMPPTYYDRSL---ADIFPPHLLKKVVSEVVSTFLLVFVTCGAAG 68

Query: 64  LSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQIGELA 123
           +   D+ R+S+LG SVAGGLIVTVMIYAVGHISGAHMNPAVTLAFA  RHFPW Q+    
Sbjct: 69  IYGSDKDRISQLGQSVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAVFRHFPWIQVPFYW 128

Query: 124 GIAVGSAVCITSVL 137
                 ++C + VL
Sbjct: 129 AAQFTGSICASFVL 142
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Zea mays (taxid: 4577)
>sp|Q6Z2T3|NIP21_ORYSJ Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q40746|NIP11_ORYSJ Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q67WJ8|NIP22_ORYSJ Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATN2|NIP22_MAIZE Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9AT74|NIP23_MAIZE Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATN4|NIP11_MAIZE Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2 Back     alignment and function description
>sp|Q0DK16|NIP13_ORYSJ Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2 Back     alignment and function description
>sp|Q8W036|NIP42_ARATH Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
359489000294 PREDICTED: aquaporin NIP2-1-like [Vitis 0.986 0.744 0.470 3e-54
255587854297 Silicon transporter, putative [Ricinus c 0.945 0.707 0.464 2e-50
224141393278 aquaporin, MIP family, NIP subfamily [Po 0.954 0.762 0.430 7e-46
327187682288 silicon transporter 1 [Cucurbita moschat 0.936 0.722 0.407 3e-44
33468424288 Nod26-like protein [Cucurbita pepo] 0.936 0.722 0.407 4e-44
327187680288 silicon transporter 1 [Cucurbita moschat 0.936 0.722 0.407 5e-44
449459480288 PREDICTED: aquaporin NIP2-1-like [Cucumi 0.927 0.715 0.413 4e-43
357501867274 Aquaporin NIP2-1 [Medicago truncatula] g 0.761 0.616 0.434 1e-41
125581410243 hypothetical protein OsJ_05995 [Oryza sa 0.770 0.703 0.456 1e-38
357140608280 PREDICTED: aquaporin NIP1-1-like [Brachy 0.761 0.603 0.394 3e-34
>gi|359489000|ref|XP_002278054.2| PREDICTED: aquaporin NIP2-1-like [Vitis vinifera] gi|296082910|emb|CBI22211.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/293 (47%), Positives = 167/293 (56%), Gaps = 74/293 (25%)

Query: 1   MASMDPNLN--TNIDELVS-VQSPPSEKPKLCLVWN---EHYPPGFLRKVIAEIIATYLL 54
           MA+ DPNL+  T+I+EL + +  P S+    C +W    EHYPPGFLRKV+AE+IATYLL
Sbjct: 1   MATTDPNLSNSTSINELTTALHHPDSQNSNPCFLWRLFLEHYPPGFLRKVVAEVIATYLL 60

Query: 55  VFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHF 114
           VFVTCGSAALSA DE RVSKLGASVAGGLIVT MIYAVGHISGAHMNPAVTLAFAAVRHF
Sbjct: 61  VFVTCGSAALSASDEQRVSKLGASVAGGLIVTAMIYAVGHISGAHMNPAVTLAFAAVRHF 120

Query: 115 PWKQI-----GELAGIAVGSAVCITSVLAGPVSGGSMNPART-----------------V 152
           PWKQ+      +L G A+G+A  +  +L      G+  P+ T                 +
Sbjct: 121 PWKQVPLYAAAQLTG-AIGAAFTLRELLYPIKHLGTTTPSGTEIQALVMEIVVTFSMMFI 179

Query: 153 GPAIASSF-----YKGIWV--------YLVGPVTG------------------------- 174
             A+A+         GI V         L GPV+G                         
Sbjct: 180 TSAVATDTKAIGELAGIAVGSAVCITSILAGPVSGGSMNPARTLGPAIASADYKGIWVYA 239

Query: 175 ------TFMGAWSYNMIRETDKPAHAISPGSLSFKLRRLKSNE-QAHNNDPLD 220
                 T +G WSYN IR T+KP  AISP S S KL R++SN  +  + DPL+
Sbjct: 240 VGPVSGTLLGTWSYNFIRVTEKPVQAISPHSFSLKLCRMRSNAGEISSKDPLN 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255587854|ref|XP_002534417.1| Silicon transporter, putative [Ricinus communis] gi|223525328|gb|EEF27965.1| Silicon transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224141393|ref|XP_002324057.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222867059|gb|EEF04190.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|327187682|dbj|BAK09176.1| silicon transporter 1 [Cucurbita moschata] Back     alignment and taxonomy information
>gi|33468424|emb|CAD67694.1| Nod26-like protein [Cucurbita pepo] Back     alignment and taxonomy information
>gi|327187680|dbj|BAK09175.1| silicon transporter 1 [Cucurbita moschata] Back     alignment and taxonomy information
>gi|449459480|ref|XP_004147474.1| PREDICTED: aquaporin NIP2-1-like [Cucumis sativus] gi|449524302|ref|XP_004169162.1| PREDICTED: aquaporin NIP2-1-like [Cucumis sativus] gi|255688225|gb|ACU29603.1| Si transport-like protein 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357501867|ref|XP_003621222.1| Aquaporin NIP2-1 [Medicago truncatula] gi|355496237|gb|AES77440.1| Aquaporin NIP2-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|125581410|gb|EAZ22341.1| hypothetical protein OsJ_05995 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357140608|ref|XP_003571857.1| PREDICTED: aquaporin NIP1-1-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
TAIR|locus:2156025283 NIP4;2 "NOD26-like intrinsic p 0.432 0.339 0.520 1.2e-41
TAIR|locus:2156020283 NIP4;1 "NOD26-like intrinsic p 0.441 0.346 0.48 6.6e-41
TAIR|locus:2826185323 NIP3;1 "NOD26-like intrinsic p 0.319 0.219 0.478 1.8e-36
TAIR|locus:2082385275 NIP7;1 "NOD26-like intrinsic p 0.400 0.323 0.417 1.7e-34
TAIR|locus:2040904288 NIP2;1 "NOD26-like intrinsic p 0.409 0.315 0.408 4.9e-33
UNIPROTKB|Q6Z2T3298 NIP2-1 "Aquaporin NIP2-1" [Ory 0.545 0.406 0.549 1.1e-30
TAIR|locus:2117184294 NIP1;2 "NOD26-like intrinsic p 0.405 0.306 0.522 7.8e-23
TAIR|locus:2117119296 NLM1 "NOD26-like major intrins 0.418 0.314 0.494 3.9e-21
TIGR_CMR|SO_1307229 SO_1307 "aquaporin Z" [Shewane 0.405 0.393 0.416 1.4e-20
TAIR|locus:2122829304 NIP5;1 "NOD26-like intrinsic p 0.531 0.388 0.387 1.4e-18
TAIR|locus:2156025 NIP4;2 "NOD26-like intrinsic protein 4;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 255 (94.8 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
 Identities = 51/98 (52%), Positives = 65/98 (66%)

Query:   120 GELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGA 179
             GELAGIAVG  + +   +AGP+SG SMNPAR++GPAI    YKGIWVY+VGP  G F G 
Sbjct:   187 GELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIFAGG 246

Query:   180 WSYNMIRETDKPAHAISPGSLSFKLRRLKSNEQAHNND 217
             + YN +R TDKP   ++  S SF LR +   + A  +D
Sbjct:   247 FVYNFMRFTDKPLRELTK-SASF-LRSVAQKDNASKSD 282
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2156020 NIP4;1 "NOD26-like intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2826185 NIP3;1 "NOD26-like intrinsic protein 3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082385 NIP7;1 "NOD26-like intrinsic protein 7;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040904 NIP2;1 "NOD26-like intrinsic protein 2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z2T3 NIP2-1 "Aquaporin NIP2-1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2117184 NIP1;2 "NOD26-like intrinsic protein 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117119 NLM1 "NOD26-like major intrinsic protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1307 SO_1307 "aquaporin Z" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TAIR|locus:2122829 NIP5;1 "NOD26-like intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00170379
aquaporin, MIP family, NIP subfamily (278 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_IX0381
aquaporin, MIP family, PIP subfamily (306 aa)
  •     0.495

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 9e-29
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 1e-27
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 9e-27
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 8e-23
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 8e-22
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 2e-20
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 3e-20
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 8e-20
pfam00230218 pfam00230, MIP, Major intrinsic protein 2e-19
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 9e-19
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 3e-18
pfam00230218 pfam00230, MIP, Major intrinsic protein 1e-13
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 4e-13
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 4e-13
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 2e-12
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 2e-12
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-09
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 2e-06
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 3e-06
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 3e-04
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 5e-04
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 5e-04
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 6e-04
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information 
 Score =  108 bits (272), Expect = 9e-29
 Identities = 67/230 (29%), Positives = 101/230 (43%), Gaps = 65/230 (28%)

Query: 41  LRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHM 100
            R V+AE++ T++L+F  CG  A +      V  L  +   GL V V+++++G ISGAH+
Sbjct: 45  ARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHV 104

Query: 101 NPAVTLAFAAVRHFPWKQI---------GELAGIAVGSAV---------------CI--- 133
           NP+VT+AFA   HFPW ++         G +    VG +V               C    
Sbjct: 105 NPSVTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKADLMTTKPAQGCSSAF 164

Query: 134 ------TSVLA-------------GPVSG-------------------GSMNPARTVGPA 155
                 T ++              G +SG                   GSMNPAR++GPA
Sbjct: 165 WVEFIATFIVMFLAASLTSQPQSLGHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPA 224

Query: 156 IASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLR 205
           I S  +K IW+Y+  P  G   GA  ++++R   +P    S  + S  L 
Sbjct: 225 IVSWDFKDIWIYITAPTIGAVAGALMFHLLRLRTQPCSPNSSPNTSLLLH 274

Length = 274
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 222
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.97
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.96
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.23
PLN00182283 putative aquaporin NIP4; Provisional 99.23
PLN00026298 aquaporin NIP; Provisional 99.23
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.13
PLN00183274 putative aquaporin NIP7; Provisional 99.07
KOG0223238 consensus Aquaporin (major intrinsic protein famil 98.9
PLN00184296 aquaporin NIP1; Provisional 98.83
PLN00166250 aquaporin TIP2; Provisional 98.64
PTZ00016294 aquaglyceroporin; Provisional 98.59
PRK05420231 aquaporin Z; Provisional 98.59
PLN00167256 aquaporin TIP5; Provisional 98.59
PLN00027252 aquaporin TIP; Provisional 98.58
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 98.48
COG0580241 GlpF Glycerol uptake facilitator and related perme 98.32
KOG0224316 consensus Aquaporin (major intrinsic protein famil 96.85
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-41  Score=288.72  Aligned_cols=156  Identities=44%  Similarity=0.725  Sum_probs=143.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHhhhhcccCcccccchhhHHHHHHHHHHHHHHHhcccCccccchHHHHHHHHHhc
Q 027490           34 EHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRH  113 (222)
Q Consensus        34 ~~~~~~l~r~~laEfigTfllvf~g~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~i~~~g~iSGah~NPAVTla~~l~g~  113 (222)
                      +.++.+.+|++++||++|++++|++|+++..........+.+.+++++|+++++.+|++|++||||+|||||+++++.|+
T Consensus         4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~   83 (238)
T KOG0223|consen    4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGK   83 (238)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCC
Confidence            45677899999999999999999999998765544455667889999999999999999999999999999999999999


Q ss_pred             CCccc---------------------------------------------------------------------ccchhH
Q 027490          114 FPWKQ---------------------------------------------------------------------IGELAG  124 (222)
Q Consensus       114 ~~~~~---------------------------------------------------------------------~~~~~g  124 (222)
                      +++.+                                                                     .+.+.|
T Consensus        84 isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~~~a~  163 (238)
T KOG0223|consen   84 ISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRSELAP  163 (238)
T ss_pred             CcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCcccHH
Confidence            99877                                                                     235678


Q ss_pred             HHHHHHHHHHhhcccccCCCCccccccccccccccCCCceEEeeecchHHHHHHHHHHHHHhcCC
Q 027490          125 IAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETD  189 (222)
Q Consensus       125 ~~iG~~v~~~~~~~~~~tG~~~NPAr~fgp~~~~~~~~~~wvy~v~P~~Ga~~a~~~y~~~~~~~  189 (222)
                      +.||.++.+.++.++++||++|||||+|||+++.+.|++|||||+||++|+++++++|++++.++
T Consensus       164 l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~  228 (238)
T KOG0223|consen  164 LAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPD  228 (238)
T ss_pred             HHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence            89999999999999999999999999999999999999999999999999999999999998776

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 1e-12
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 2e-12
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 2e-12
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 9e-12
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 5e-11
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 5e-11
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 5e-11
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 8e-11
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 3e-09
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 1e-08
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 2e-04
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 9e-08
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 5e-04
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 1e-07
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 1e-05
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 3e-07
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 2e-05
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 3e-07
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 2e-05
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 4e-07
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 1e-05
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 8e-07
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 7e-05
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 1e-05
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 1e-05
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 1e-05
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 3e-05
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 8e-04
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 3e-05
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 6e-05
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 6e-05
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 6e-05
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 6e-05
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 6e-05
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 6e-05
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 7e-05
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 2e-04
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure 
Iteration: 1

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 41  LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
            RK+ AE   T+ LVF  CGSA L+A + E  +   G ++A GL V  M +AVGHISG H
Sbjct: 5   FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQI 119
            NPAVT+   A   FP K++
Sbjct: 65  FNPAVTIGLWAGGRFPAKEV 84
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
2o9g_A234 Aquaporin Z; integral membrane protein, structural 2e-31
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-18
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 8e-30
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 8e-20
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 7e-29
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 5e-20
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-28
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 5e-22
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 4e-28
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 6e-22
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 5e-26
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 1e-13
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 1e-25
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 7e-18
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 2e-25
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-17
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 3e-25
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 4e-14
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 2e-24
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 3e-14
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 4e-24
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 5e-16
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 8e-24
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 1e-09
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 4e-23
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 2e-15
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
 Score =  113 bits (286), Expect = 2e-31
 Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 10/147 (6%)

Query: 39  GFLRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISG 97
              RK+ AE   T+ LVF   GSA L+A + E  +   G ++A GL V  M +AVGHISG
Sbjct: 3   HMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISG 62

Query: 98  AHMNPAVTLAFAAVRHFPWKQ-----IGELAGIAVGSAV--CITSVLAGPVSGGSMNPAR 150
            H NPAVT+   A   FP K+     I ++ G  V +A+   I S   G  +  S   + 
Sbjct: 63  GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122

Query: 151 TVGPAIASSFYKGIWVYLVGPVTGTFM 177
             G      +   +   LV  +  +  
Sbjct: 123 GYGEHSPGGY--SMLSALVVELVLSAG 147
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.18
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 98.76
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 98.74
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 98.67
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 98.66
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 98.66
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 98.66
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 98.65
2o9g_A234 Aquaporin Z; integral membrane protein, structural 98.65
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 98.61
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 98.53
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 98.52
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 98.49
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=4.9e-44  Score=316.04  Aligned_cols=160  Identities=31%  Similarity=0.535  Sum_probs=140.5

Q ss_pred             hhhccCChhHHHHHHHHHHHHHHHHHHHHhhhhccc--CcccccchhhHHHHHHHHHHHHHHHhcccCccccchHHHHHH
Q 027490           31 VWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSA--YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAF  108 (222)
Q Consensus        31 ~~~~~~~~~l~r~~laEfigTfllvf~g~~~~~~~~--~~~~~~~~~~~~l~~G~~v~~~i~~~g~iSGah~NPAVTla~  108 (222)
                      ..++.+++.+||++++||+|||+|+|+++++++...  ......+++.++++||+++++++|+++++||||+|||||+++
T Consensus        42 ~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal  121 (340)
T 3iyz_A           42 AFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAM  121 (340)
T ss_pred             hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHH
Confidence            566788899999999999999999999999987332  122345788899999999999999999999999999999999


Q ss_pred             HHHhcCCccc----------------------------------------------------------------------
Q 027490          109 AAVRHFPWKQ----------------------------------------------------------------------  118 (222)
Q Consensus       109 ~l~g~~~~~~----------------------------------------------------------------------  118 (222)
                      ++.|+++|.+                                                                      
T Consensus       122 ~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~  201 (340)
T 3iyz_A          122 VCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTD  201 (340)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence            9999999887                                                                      


Q ss_pred             ccchhHHHHHHHHHHHhhcccccCCCCccccccccccccccCCCceEEeeecchHHHHHHHHHHHHHhcCCC
Q 027490          119 IGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDK  190 (222)
Q Consensus       119 ~~~~~g~~iG~~v~~~~~~~~~~tG~~~NPAr~fgp~~~~~~~~~~wvy~v~P~~Ga~~a~~~y~~~~~~~~  190 (222)
                      ...+.|+.||+++.+++++++++||++||||||||||++.+.|+++||||+||++|+++|+++|++++.++.
T Consensus       202 ~~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~~w~~~WVywvgPiiGailaallY~~l~~p~~  273 (340)
T 3iyz_A          202 VTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDV  273 (340)
T ss_pred             cccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHHhCCCh
Confidence            012456778888877778888999999999999999999999999999999999999999999999987654
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 222
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 1e-16
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 7e-10
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 8e-16
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 2e-09
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 6e-15
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 3e-11
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 7e-14
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 1e-08
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.0 bits (181), Expect = 1e-16
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 4/143 (2%)

Query: 40  FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
           F R + AE  A+   VF   G++   A     +  L  ++A GL +  ++ AVGHISGAH
Sbjct: 4   FWRAICAEFFASLFYVFFGLGASLRWAPGP--LHVLQVALAFGLALATLVQAVGHISGAH 61

Query: 100 MNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAG--PVSGGSMNPARTVGPAIA 157
           +NPAVT AF         +        +  AV   +VL    P +        T+ P ++
Sbjct: 62  VNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVS 121

Query: 158 SSFYKGIWVYLVGPVTGTFMGAW 180
                 + ++L           +
Sbjct: 122 VGQATIVEIFLTLQFVLCIFATY 144
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 98.75
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 98.47
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 98.46
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 98.29
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-40  Score=280.61  Aligned_cols=153  Identities=33%  Similarity=0.515  Sum_probs=134.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhhhhcccCcccccchhhHHHHHHHHHHHHHHHhcccCccccchHHHHHHHHHhcCCc
Q 027490           37 PPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPW  116 (222)
Q Consensus        37 ~~~l~r~~laEfigTfllvf~g~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~i~~~g~iSGah~NPAVTla~~l~g~~~~  116 (222)
                      +.++||++++||+|||+++|++++++.....  ...+.+.+++++|+++++++|+++++||||+|||||+++++.|+++|
T Consensus         1 s~s~~r~~laEf~GT~~lvf~g~gs~~~~~~--~~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i~~   78 (234)
T d1ymga1           1 SASFWRAICAEFFASLFYVFFGLGASLRWAP--GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSL   78 (234)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHCSCC---CHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhccCCCh
Confidence            3578999999999999999999998764332  23456788999999999999999999999999999999999999999


Q ss_pred             cc----------------------------------------------------------------------ccchhHHH
Q 027490          117 KQ----------------------------------------------------------------------IGELAGIA  126 (222)
Q Consensus       117 ~~----------------------------------------------------------------------~~~~~g~~  126 (222)
                      .+                                                                      .....++.
T Consensus        79 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~~~~~~~~l~  158 (234)
T d1ymga1          79 LRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALA  158 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCSCCCCHHHH
T ss_pred             hheeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheeeecCCccCcCcceeEe
Confidence            87                                                                      01234667


Q ss_pred             HHHHHHHHhhcccccCCCCccccccccccccccCCCceEEeeecchHHHHHHHHHHHHHhcCCCC
Q 027490          127 VGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKP  191 (222)
Q Consensus       127 iG~~v~~~~~~~~~~tG~~~NPAr~fgp~~~~~~~~~~wvy~v~P~~Ga~~a~~~y~~~~~~~~~  191 (222)
                      ||.++.+..+..+++||++|||||||||+++++.|+++||||+||++|+++|+++|++++.++.+
T Consensus       159 ig~~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~  223 (234)
T d1ymga1         159 VGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLK  223 (234)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCC
T ss_pred             ehHHHHHHHHHhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCCc
Confidence            88888888888888999999999999999999999999999999999999999999999876544
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure