Citrus Sinensis ID: 027514

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
MMMARSLLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVISSFICIPIQCHPCTSSN
cccccccEEEEEccccHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccEEccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHHHHHHcccccEEEEEcccccccEEEEccHHHHHHHHHHHHHccccccccccccccccccccccccc
ccccccEEEEEEcccccHHcccHHHHHccHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEccHHHHHHHHHHHHHccccEEEEEccccccccHHHccccc
MMMARSLLLFYVLSQGAqavgmgkeaqsVPAAAELYKKANDILGFDLleictngpkekldstiisqpaiYVTSLAAVELLRARdggqqiidsvdvtcglslGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIAnylcpgnyavsggvKGIEAVEAKAKSFKARMTVISSficipiqchpctssn
MMMARSLLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVISSFicipiqchpctssn
MMMARSLLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVISSFICIPIQCHPCTSSN
*****SLLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVISSFICIPIQCHPC****
****RSLLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVISSFICIPIQCHPCTS**
MMMARSLLLFYVLSQGAQ***********PAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA********KGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVISSFICIPIQCHPCTSSN
****RSLLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVISSFICIPI*********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMMARSLLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVISSFICIPIQCHPCTSSN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query222 2.2.26 [Sep-21-2011]
Q8R3F5 381 Malonyl-CoA-acyl carrier yes no 0.873 0.509 0.391 3e-33
Q8IVS2 390 Malonyl-CoA-acyl carrier yes no 0.873 0.497 0.391 1e-32
Q8T3L6379 Probable malonyl-CoA-acyl yes no 0.837 0.490 0.407 5e-31
P71019 317 Malonyl CoA-acyl carrier yes no 0.855 0.599 0.39 7e-29
P43712 312 Malonyl CoA-acyl carrier yes no 0.725 0.516 0.382 1e-23
P0AAI9309 Malonyl CoA-acyl carrier N/A no 0.770 0.553 0.353 1e-22
P0AAJ0309 Malonyl CoA-acyl carrier yes no 0.770 0.553 0.353 1e-22
Q8X8I7309 Malonyl CoA-acyl carrier N/A no 0.770 0.553 0.353 2e-22
O85140309 Malonyl CoA-acyl carrier yes no 0.770 0.553 0.348 3e-22
Q6GHK5308 Malonyl CoA-acyl carrier yes no 0.837 0.603 0.345 1e-21
>sp|Q8R3F5|FABD_MOUSE Malonyl-CoA-acyl carrier protein transacylase, mitochondrial OS=Mus musculus GN=Mcat PE=2 SV=3 Back     alignment and function desciption
 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/202 (39%), Positives = 113/202 (55%), Gaps = 8/202 (3%)

Query: 6   SLLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIIS 65
           S+LLF    QG QAVGMG     +P   +LY+ A+ +LG+DLLE+C  GP+E LD T+  
Sbjct: 61  SVLLF--PGQGCQAVGMGSGLLHLPRVRQLYEAAHRVLGYDLLELCLRGPQEDLDRTVHC 118

Query: 66  QPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLR 125
           QPA++V SLAAVE L        +ID+     G S+GE+ AL FAGA  F +GL  VK R
Sbjct: 119 QPAVFVASLAAVEKLHHLQPA--VIDNCVAAAGFSVGEFAALVFAGAMDFSEGLYAVKAR 176

Query: 126 GAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVD----EDNKVQIANYLCPGNYAV 181
             AMQEA++A    M+S++G         C  A +       E+   Q++NYL P    +
Sbjct: 177 AEAMQEASEAVPSGMLSVLGQRQSNFSFACLEAQEHCKSLGIENPVCQVSNYLFPDCRVI 236

Query: 182 SGGVKGIEAVEAKAKSFKARMT 203
           SG ++ ++ +   +  +  R T
Sbjct: 237 SGHLEALQFLRRNSAKYHFRRT 258
Catalyzes the transfer of a malonyl moiety from malonyl-CoA to the free thiol group of the phosphopantetheine arm of the mitochondrial ACP protein (NDUFAB1). This suggests the existence of the biosynthesis of fatty acids in mitochondrias.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 3EC: 9
>sp|Q8IVS2|FABD_HUMAN Malonyl-CoA-acyl carrier protein transacylase, mitochondrial OS=Homo sapiens GN=MCAT PE=1 SV=2 Back     alignment and function description
>sp|Q8T3L6|FABD_DROME Probable malonyl-CoA-acyl carrier protein transacylase, mitochondrial OS=Drosophila melanogaster GN=beg PE=2 SV=2 Back     alignment and function description
>sp|P71019|FABD_BACSU Malonyl CoA-acyl carrier protein transacylase OS=Bacillus subtilis (strain 168) GN=fabD PE=3 SV=2 Back     alignment and function description
>sp|P43712|FABD_HAEIN Malonyl CoA-acyl carrier protein transacylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=fabD PE=3 SV=1 Back     alignment and function description
>sp|P0AAI9|FABD_ECOLI Malonyl CoA-acyl carrier protein transacylase OS=Escherichia coli (strain K12) GN=fabD PE=1 SV=2 Back     alignment and function description
>sp|P0AAJ0|FABD_ECOL6 Malonyl CoA-acyl carrier protein transacylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fabD PE=3 SV=2 Back     alignment and function description
>sp|Q8X8I7|FABD_ECO57 Malonyl CoA-acyl carrier protein transacylase OS=Escherichia coli O157:H7 GN=fabD PE=3 SV=3 Back     alignment and function description
>sp|O85140|FABD_SALTY Malonyl CoA-acyl carrier protein transacylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fabD PE=1 SV=3 Back     alignment and function description
>sp|Q6GHK5|FABD_STAAR Malonyl CoA-acyl carrier protein transacylase OS=Staphylococcus aureus (strain MRSA252) GN=fabD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
224103857 371 predicted protein [Populus trichocarpa] 0.878 0.525 0.902 3e-97
225434451 392 PREDICTED: malonyl-CoA-acyl carrier prot 0.878 0.497 0.892 5e-97
449455001 365 PREDICTED: malonyl-CoA-acyl carrier prot 0.878 0.534 0.887 1e-96
255550619 400 Malonyl-CoA : ACP Acyltransferase (MCAAT 0.878 0.487 0.882 2e-95
193290714 384 putative acyl-carrier-protein S-malonylt 0.878 0.507 0.887 3e-95
357458045 359 Malonyl CoA-acyl carrier protein transac 0.878 0.543 0.866 4e-94
210110182 385 malonyl-CoA:ACP transacylase 1-2 [Arachi 0.878 0.506 0.866 1e-93
351723705 344 malonyltransferase [Glycine max] gi|8261 0.878 0.566 0.861 2e-93
210110272 386 malonyl-CoA:ACP transacylase 1-3 [Arachi 0.878 0.505 0.866 2e-93
356539668 340 PREDICTED: LOW QUALITY PROTEIN: malonyl- 0.878 0.573 0.866 2e-93
>gi|224103857|ref|XP_002313221.1| predicted protein [Populus trichocarpa] gi|222849629|gb|EEE87176.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 176/195 (90%), Positives = 185/195 (94%)

Query: 10  FYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAI 69
           F    QGAQAVGMGKEA SV AA+ELYKKANDILG+DLLE+C  GPKEKLDST+ISQPAI
Sbjct: 70  FLFPGQGAQAVGMGKEAHSVSAASELYKKANDILGYDLLELCIGGPKEKLDSTVISQPAI 129

Query: 70  YVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAM 129
           YVTSLAAVE+LRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG AM
Sbjct: 130 YVTSLAAVEVLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGEAM 189

Query: 130 QEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIE 189
           QEAADAAKGAMVS+IGLDSDKVQQLCDAANQEVDE ++VQIANYLCPGNYAVSGGVKG+E
Sbjct: 190 QEAADAAKGAMVSVIGLDSDKVQQLCDAANQEVDEADRVQIANYLCPGNYAVSGGVKGVE 249

Query: 190 AVEAKAKSFKARMTV 204
           AVEAKAKSFKARMTV
Sbjct: 250 AVEAKAKSFKARMTV 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225434451|ref|XP_002273446.1| PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Vitis vinifera] Back     alignment and taxonomy information
>gi|449455001|ref|XP_004145242.1| PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial-like [Cucumis sativus] gi|449471626|ref|XP_004153364.1| PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial-like [Cucumis sativus] gi|449514565|ref|XP_004164413.1| PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255550619|ref|XP_002516359.1| Malonyl-CoA : ACP Acyltransferase (MCAAT) [Ricinus communis] gi|223544525|gb|EEF46043.1| Malonyl-CoA : ACP Acyltransferase (MCAAT) [Ricinus communis] Back     alignment and taxonomy information
>gi|193290714|gb|ACF17665.1| putative acyl-carrier-protein S-malonyltransferase/ transferase [Capsicum annuum] Back     alignment and taxonomy information
>gi|357458045|ref|XP_003599303.1| Malonyl CoA-acyl carrier protein transacylase [Medicago truncatula] gi|355488351|gb|AES69554.1| Malonyl CoA-acyl carrier protein transacylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|210110182|gb|ACJ07138.1| malonyl-CoA:ACP transacylase 1-2 [Arachis hypogaea] Back     alignment and taxonomy information
>gi|351723705|ref|NP_001238312.1| malonyltransferase [Glycine max] gi|82618886|gb|ABB85235.1| malonyltransferase [Glycine max] Back     alignment and taxonomy information
>gi|210110272|gb|ACJ07139.1| malonyl-CoA:ACP transacylase 1-3 [Arachis hypogaea] Back     alignment and taxonomy information
>gi|356539668|ref|XP_003538317.1| PREDICTED: LOW QUALITY PROTEIN: malonyl-CoA-acyl carrier protein transacylase, mitochondrial-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
TAIR|locus:2060884393 EMB3147 "EMBRYO DEFECTIVE 3147 0.878 0.496 0.882 8.9e-86
MGI|MGI:2388651 381 Mcat "malonyl CoA:ACP acyltran 0.873 0.509 0.396 4.7e-32
RGD|1306698 380 Mcat "malonyl CoA:ACP acyltran 0.873 0.510 0.396 1.3e-31
UNIPROTKB|Q8IVS2 390 MCAT "Malonyl-CoA-acyl carrier 0.873 0.497 0.396 2e-31
UNIPROTKB|F1PUF5 384 MCAT "Uncharacterized protein" 0.873 0.505 0.386 1.1e-30
UNIPROTKB|E1BPG0 387 MCAT "Uncharacterized protein" 0.873 0.501 0.386 1.4e-30
FB|FBgn0036691379 beg "bad egg" [Drosophila mela 0.860 0.503 0.417 2.3e-30
UNIPROTKB|F1SJS0 384 LOC100523602 "Uncharacterized 0.873 0.505 0.386 3e-30
TIGR_CMR|GSU_1602307 GSU_1602 "malonyl CoA-acyl car 0.846 0.612 0.389 7.1e-29
WB|WBGene00016812 411 C50D2.9 [Caenorhabditis elegan 0.864 0.467 0.351 1.5e-28
TAIR|locus:2060884 EMB3147 "EMBRYO DEFECTIVE 3147" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 172/195 (88%), Positives = 182/195 (93%)

Query:    10 FYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAI 69
             F    QGAQAVGMGKE+QSV AA ELYKKANDILG+DLL+IC NGPKEKLDST+ISQPAI
Sbjct:    92 FLFPGQGAQAVGMGKESQSVGAAGELYKKANDILGYDLLDICVNGPKEKLDSTVISQPAI 151

Query:    70 YVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAM 129
             YVTSLAAVELLR R+GG+QII+SVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG AM
Sbjct:   152 YVTSLAAVELLRVREGGEQIINSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGEAM 211

Query:   130 QEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIE 189
             Q AADAAK AMVSIIGLDS+KVQQLCDAANQEVDE +KVQIANYLCPGNYAVSGG+KGIE
Sbjct:   212 QAAADAAKSAMVSIIGLDSEKVQQLCDAANQEVDEADKVQIANYLCPGNYAVSGGLKGIE 271

Query:   190 AVEAKAKSFKARMTV 204
              VEAKAKSFKARMTV
Sbjct:   272 VVEAKAKSFKARMTV 286
GO:0003824 "catalytic activity" evidence=IEA
GO:0004314 "[acyl-carrier-protein
GO:0005739 "mitochondrion" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016740 "transferase activity" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0006744 "ubiquinone biosynthetic process" evidence=RCA
MGI|MGI:2388651 Mcat "malonyl CoA:ACP acyltransferase (mitochondrial)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306698 Mcat "malonyl CoA:ACP acyltransferase (mitochondrial)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IVS2 MCAT "Malonyl-CoA-acyl carrier protein transacylase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PUF5 MCAT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPG0 MCAT "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0036691 beg "bad egg" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJS0 LOC100523602 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1602 GSU_1602 "malonyl CoA-acyl carrier protein transacylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
WB|WBGene00016812 C50D2.9 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.1LOW CONFIDENCE prediction!
3rd Layer2.3.1.39LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IX0832
[acyl-carrier protein] S-malonyltransferase (EC-2.3.1.39) (371 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.II.519.1
3-oxoacyl-[acyl-carrier-protein] synthase II (EC-2.3.1.179) (415 aa)
•••  •• 0.982
estExt_fgenesh4_pm.C_LG_III0476
hypothetical protein (429 aa)
• •  •• 0.981
gw1.I.8529.1
hypothetical protein (444 aa)
• •  •• 0.979
gw1.XVIII.628.1
3-oxoacyl-[acyl-carrier-protein] synthase II (EC-2.3.1.41) (435 aa)
• •  •• 0.978
eugene3.00110468
hypothetical protein (467 aa)
• •• •• 0.978
estExt_Genewise1_v1.C_LG_IV4414
hypothetical protein (472 aa)
• •• •• 0.978
estExt_Genewise1_v1.C_280209
3-oxoacyl-[acyl-carrier-protein] synthase II (EC-2.3.1.41) (493 aa)
• •  •• 0.972
grail3.0164004802
hypothetical protein (526 aa)
•    •• 0.964
estExt_fgenesh4_pm.C_LG_VI0248
hypothetical protein (528 aa)
•    •• 0.963
gw1.III.1824.1
hypothetical protein (176 aa)
• •  •  0.959

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
PLN02752343 PLN02752, PLN02752, [acyl-carrier protein] S-malon 1e-123
COG0331310 COG0331, FabD, (acyl-carrier-protein) S-malonyltra 1e-60
TIGR00128290 TIGR00128, fabD, malonyl CoA-acyl carrier protein 3e-50
TIGR03131295 TIGR03131, malonate_mdcH, malonate decarboxylase, 3e-27
smart00827298 smart00827, PKS_AT, Acyl transferase domain in pol 4e-26
COG3321 1061 COG3321, COG3321, Polyketide synthase modules and 5e-18
pfam00698 319 pfam00698, Acyl_transf_1, Acyl transferase domain 2e-17
TIGR02813 2582 TIGR02813, omega_3_PfaA, polyketide-type polyunsat 3e-10
>gnl|CDD|215401 PLN02752, PLN02752, [acyl-carrier protein] S-malonyltransferase Back     alignment and domain information 
 Score =  351 bits (902), Expect = e-123
 Identities = 153/191 (80%), Positives = 167/191 (87%)

Query: 15  QGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSL 74
           QGAQAVGMGKEA  VPAA  L+ KA++ILG+DLL++C NGPKEKLDST++SQPAIYV SL
Sbjct: 47  QGAQAVGMGKEAAEVPAAKALFDKASEILGYDLLDVCVNGPKEKLDSTVVSQPAIYVASL 106

Query: 75  AAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAAD 134
           AAVE LRARDGGQ +IDSVDV  GLSLGEYTAL FAGA SFEDGLKLVKLRG AMQ AAD
Sbjct: 107 AAVEKLRARDGGQAVIDSVDVCAGLSLGEYTALVFAGALSFEDGLKLVKLRGEAMQAAAD 166

Query: 135 AAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEAK 194
           A    MVS+IGLDSDKVQ+LC AAN+EV ED+ VQIANYLCPGNYAVSGG KGI+AVEAK
Sbjct: 167 AGPSGMVSVIGLDSDKVQELCAAANEEVGEDDVVQIANYLCPGNYAVSGGKKGIDAVEAK 226

Query: 195 AKSFKARMTVI 205
           AKSFKARMTV 
Sbjct: 227 AKSFKARMTVR 237

Length = 343
>gnl|CDD|223408 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|232839 TIGR00128, fabD, malonyl CoA-acyl carrier protein transacylase Back     alignment and domain information
>gnl|CDD|132175 TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit Back     alignment and domain information
>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain Back     alignment and domain information
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 222
COG0331310 FabD (acyl-carrier-protein) S-malonyltransferase [ 100.0
PLN02752343 [acyl-carrier protein] S-malonyltransferase 100.0
TIGR00128290 fabD malonyl CoA-acyl carrier protein transacylase 100.0
PF00698 318 Acyl_transf_1: Acyl transferase domain; InterPro: 100.0
TIGR03131295 malonate_mdcH malonate decarboxylase, epsilon subu 100.0
smart00827298 PKS_AT Acyl transferase domain in polyketide synth 100.0
TIGR02813 2582 omega_3_PfaA polyketide-type polyunsaturated fatty 100.0
KOG2926 386 consensus Malonyl-CoA:ACP transacylase [Lipid tran 100.0
TIGR02816 538 pfaB_fam PfaB family protein. The protein PfaB is 100.0
KOG1202 2376 consensus Animal-type fatty acid synthase and rela 100.0
COG3321 1061 Polyketide synthase modules and related proteins [ 99.96
cd07198172 Patatin Patatin-like phospholipase. Patatin is a s 95.03
cd07205175 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholi 95.0
cd07223 405 Pat_PNPLA5-mammals Patatin-like phospholipase doma 94.08
cd07207194 Pat_ExoU_VipD_like ExoU and VipD-like proteins; ho 93.71
cd07219 382 Pat_PNPLA1 Patatin-like phospholipase domain conta 93.66
cd07221252 Pat_PNPLA3 Patatin-like phospholipase domain conta 93.41
cd07220249 Pat_PNPLA2 Patatin-like phospholipase domain conta 93.32
cd07210221 Pat_hypo_W_succinogenes_WS1459_like Hypothetical p 93.02
cd07209215 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin sim 92.99
COG1752 306 RssA Predicted esterase of the alpha-beta hydrolas 92.86
cd07227 269 Pat_Fungal_NTE1 Fungal patatin-like phospholipase 92.62
cd07218245 Pat_iPLA2 Calcium-independent phospholipase A2; Cl 92.62
cd07204243 Pat_PNPLA_like Patatin-like phospholipase domain c 92.43
cd07228175 Pat_NTE_like_bacteria Bacterial patatin-like phosp 92.41
cd07222246 Pat_PNPLA4 Patatin-like phospholipase domain conta 92.35
cd07225 306 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domai 92.01
cd07224233 Pat_like Patatin-like phospholipase. Patatin-like 91.63
cd07229 391 Pat_TGL3_like Triacylglycerol lipase 3. Triacylgly 91.33
PRK10279 300 hypothetical protein; Provisional 90.13
cd07212 312 Pat_PNPLA9 Patatin-like phospholipase domain conta 88.53
cd07231323 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar 88.29
cd07206298 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 88.07
PF09752348 DUF2048: Uncharacterized conserved protein (DUF204 87.64
cd07230 421 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TG 87.02
cd07213 288 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipa 86.25
cd07232 407 Pat_PLPL Patain-like phospholipase. Patatin-like p 85.92
cd07208 266 Pat_hypo_Ecoli_yjju_like Hypothetical patatin simi 85.29
cd07211 308 Pat_PNPLA8 Patatin-like phospholipase domain conta 83.68
PRK11126242 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl 81.89
COG3208244 GrsT Predicted thioesterase involved in non-riboso 81.57
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-47  Score=311.73  Aligned_cols=206  Identities=39%  Similarity=0.603  Sum_probs=193.5

Q ss_pred             CcEEEEEcCcccchHHhhHh-hhccHHHHHHHHHHHHHcCCChHHHhhcCCCccccCccchhhHHHHHHHHHHHHHHHhc
Q 027514            6 SLLLFYVLSQGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARD   84 (222)
Q Consensus         6 ~~~~~~F~GqG~~~~~~~~~-~~~~p~~~~~~~~~~~~lg~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~l~~~~   84 (222)
                      .+++|+|||||+||.+|+++ |.+++.+++.++++++.+++++.+++.++++..+..+.++||++++++++.++.|++.+
T Consensus         2 ~~~A~~FpGQGsQ~~gMg~~l~~~~~~a~~~~~~a~~~l~~~l~~i~~~~p~~~L~~T~~tQPal~~~s~a~~~~l~~~~   81 (310)
T COG0331           2 SKTAFVFPGQGSQSLGMGKDLYENSPEAKETFDEADEALGFDLWALVFEGPEEELNLTQNTQPALLLVSLAAYRVLAEQG   81 (310)
T ss_pred             CcceEEeCCchHHHHHhHHHHHhccHHHHHHHHHHHHHhcccHHHHhcCCCHHHhcccchhhHHHHHHHHHHHHHHHHhc
Confidence            35899999999999999999 78899999999999999999999999988888899999999999999999999999984


Q ss_pred             CCCCcccCccEEeeccHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccCCCceEEEcCCCHHHHHHHHHHhcccCCC
Q 027514           85 GGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDE  164 (222)
Q Consensus        85 ~gi~~~~~p~~~~G~S~Ge~~A~~~aG~~~~~~a~~~~~~r~~~~~~~~~~~~g~m~av~~~~~~~~~~~l~~~~~~~~~  164 (222)
                      +++    +|++++|||+|||+|++++|+++++++++++..|+.+|+++.+.+.+.|.++.|++.++++++|++.+.    
T Consensus        82 ~~~----~p~~~aGHSlGEysAl~~ag~~~~ed~~~Lv~~RG~~M~~a~p~~~g~Maav~gl~~e~v~~~~~~~~~----  153 (310)
T COG0331          82 LGV----KPDFVAGHSLGEYSALAAAGVLSFEDALKLVRKRGKLMQEAVPRGEGGMAAVLGLDDEQVEKACEEAAQ----  153 (310)
T ss_pred             CCC----CCceeecccHhHHHHHHHcccccHHHHHHHHHHHHHHHHHHccCCCccHHHHcCCCHHHHHHHHHHhcc----
Confidence            346    999999999999999999999999999999999999999998778899999999999999999999764    


Q ss_pred             CCcEEEEEeeCCCCEEEEcCHHHHHHHHHHHHhcCCCceEEccccCCCCCCCCCCC
Q 027514          165 DNKVQIANYLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVISSFICIPIQCHPCTS  220 (222)
Q Consensus       165 ~~~~~ia~~ns~~~~visG~~~~l~~l~~~l~~~~~~~~~~L~~~~~p~Hs~~~~~  220 (222)
                      ...++|+++|+|+|+||||++++|+++.+.+++.+.++..+|+++ .|||||+|..
T Consensus       154 ~~~v~iaN~N~~~QiVIsG~~~ale~a~~~~~~~g~kr~i~l~vs-~pfHs~lm~p  208 (310)
T COG0331         154 GTVVEIANYNSPGQIVISGTKEALEKAAEILKEAGAKRAIPLPVS-GPFHSPLMKP  208 (310)
T ss_pred             CCeEEEeeeCCCCcEEEECCHHHHHHHHHHHHHhhhhhhcccCCC-chhhhhhhHH
Confidence            236999999999999999999999999999999998888999999 9999999864

>PLN02752 [acyl-carrier protein] S-malonyltransferase Back     alignment and domain information
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase Back     alignment and domain information
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2 Back     alignment and domain information
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit Back     alignment and domain information
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>KOG2926 consensus Malonyl-CoA:ACP transacylase [Lipid transport and metabolism] Back     alignment and domain information
>TIGR02816 pfaB_fam PfaB family protein Back     alignment and domain information
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd07198 Patatin Patatin-like phospholipase Back     alignment and domain information
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5 Back     alignment and domain information
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1 Back     alignment and domain information
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3 Back     alignment and domain information
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2 Back     alignment and domain information
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes Back     alignment and domain information
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli Back     alignment and domain information
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2 Back     alignment and domain information
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family Back     alignment and domain information
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4 Back     alignment and domain information
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7 Back     alignment and domain information
>cd07224 Pat_like Patatin-like phospholipase Back     alignment and domain information
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3 Back     alignment and domain information
>PRK10279 hypothetical protein; Provisional Back     alignment and domain information
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase Back     alignment and domain information
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase Back     alignment and domain information
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function Back     alignment and domain information
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5 Back     alignment and domain information
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase Back     alignment and domain information
>cd07232 Pat_PLPL Patain-like phospholipase Back     alignment and domain information
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli Back     alignment and domain information
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional Back     alignment and domain information
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
2c2n_A339 Structure Of Human Mitochondrial Malonyltransferase 8e-34
3ptw_A 336 Crystal Structure Of Malonyl Coa-Acyl Carrier Prote 2e-27
1mla_A309 The Escherichia Coli Malonyl-Coa:acyl Carrier Prote 1e-23
2g1h_A308 Structure Of E.Coli Fabd Complexed With Glycerol Le 1e-23
3im8_A307 Crystal Structure Of Mcat From Streptococcus Pneumo 7e-23
3qat_A 318 Crystal Structure Of Acyl-Carrier-Protein-S-Malonyl 6e-22
3im9_A316 Crystal Structure Of Mcat From Staphylococcus Aureu 7e-22
3k89_A 314 Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo088 7e-22
3ezo_A 318 Crystal Structure Of Acyl-Carrier-Protein S- Malony 8e-22
3h0p_A312 2.0 Angstrom Crystal Structure Of An Acyl Carrier P 6e-21
3sbm_A281 Trans-Acting Transferase From Disorazole Synthase I 1e-20
3rgi_A286 Trans-Acting Transferase From Disorazole Synthase L 1e-20
3tqe_A 316 Structure Of The Malonyl Coa-Acyl Carrier Protein T 1e-19
3hjv_A312 1.7 Angstrom Resolution Crystal Structure Of An Acy 4e-18
3g87_A 394 Crystal Structure Of Malonyl Coa-Acyl Carrier Prote 1e-17
2cuy_A 305 Crystal Structure Of Malonyl Coa-acyl Carrier Prote 7e-17
2h1y_A 321 Crystal Structure Of Malonyl-Coa:acyl Carrier Prote 3e-15
2cdh_4305 Architecture Of The Thermomyces Lanuginosus Fungal 8e-09
2cf2_B304 Architecture Of Mammalian Fatty Acid Synthase Lengt 9e-09
1nm2_A317 "malonyl-Coa:acp Transacylase" Length = 317 9e-09
3zen_D 3089 Cryo-em Structure Of The Mycobacterial Fatty Acid S 2e-08
4amm_A 401 Crystal Structure Of The Acyltransferase Domain Of 8e-07
4amn_A 421 Crystal Structure Of The Acyltransferase Domain Of 8e-07
4amo_A 421 Crystal Structure Of The Acyltransferase Domain Of 1e-06
2qc3_A303 Crystal Structure Of Mcat From Mycobacterium Tuberc 3e-05
2qj3_A322 Mycobacterium Tuberculosis Fabd Length = 322 4e-05
2vkz_G 2051 Structure Of The Cerulenin-Inhibited Fungal Fatty A 6e-04
>pdb|2C2N|A Chain A, Structure Of Human Mitochondrial Malonyltransferase Length = 339 Back     alignment and structure 
Iteration: 1

 Score =  139 bits (351), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 79/202 (39%), Positives = 113/202 (55%), Gaps = 8/202 (3%)
Query: 6   SLLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIIS 65
           S+LLF    QG+Q VGMG+   + P   ELY  A  +LG+DLLE+  +GP+E LD T+  
Sbjct: 27  SVLLF--PGQGSQVVGMGRGLLNYPRVRELYAAARRVLGYDLLELSLHGPQETLDRTVHC 84
Query: 66  QPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLR 125
           QPAI+V SLAAVE L        +I++     G S+GE+ AL FAGA  F +GL  VK+R
Sbjct: 85  QPAIFVASLAAVEKLHHLQ--PSVIENCVAAAGFSVGEFAALVFAGAMEFAEGLYAVKIR 142
Query: 126 GAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVD----EDNKVQIANYLCPGNYAV 181
             AMQEA++A    M+S++G    K    C  A +       E+   +++NYL P    +
Sbjct: 143 AEAMQEASEAVPSGMLSVLGQPQSKFNFACLEAREHCKSLGIENPVCEVSNYLFPDCRVI 202
Query: 182 SGGVKGIEAVEAKAKSFKARMT 203
           SG  + +  ++  +  F  R T
Sbjct: 203 SGHQEALRFLQKNSSKFHFRRT 224
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein Transacylase From Clostridium Perfringens Atcc 13124 Length = 336 Back     alignment and structure
>pdb|1MLA|A Chain A, The Escherichia Coli Malonyl-Coa:acyl Carrier Protein Transacylase At 1.5-Angstroms Resolution. Crystal Structure Of A Fatty Acid Synthase Component Length = 309 Back     alignment and structure
>pdb|2G1H|A Chain A, Structure Of E.Coli Fabd Complexed With Glycerol Length = 308 Back     alignment and structure
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae Length = 307 Back     alignment and structure
>pdb|3QAT|A Chain A, Crystal Structure Of Acyl-Carrier-Protein-S-Malonyltransferase From Bartonella Henselae Length = 318 Back     alignment and structure
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus Length = 316 Back     alignment and structure
>pdb|3K89|A Chain A, Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo0880(Fabd) Complexed With Glycerol Length = 314 Back     alignment and structure
>pdb|3EZO|A Chain A, Crystal Structure Of Acyl-Carrier-Protein S- Malonyltransferase From Burkholderia Pseudomallei 1710b Length = 318 Back     alignment and structure
>pdb|3H0P|A Chain A, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein S- Malonyltransferase From Salmonella Typhimurium. Length = 312 Back     alignment and structure
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In Complex With Acetate Length = 281 Back     alignment and structure
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase Length = 286 Back     alignment and structure
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein Transacylase (Fabd) From Coxiella Burnetii Length = 316 Back     alignment and structure
>pdb|3HJV|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 Length = 312 Back     alignment and structure
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein Transacylase From Burkholderia Pseudomallei Using Dried Seaweed As Nucleant Or Protease Length = 394 Back     alignment and structure
>pdb|2CUY|A Chain A, Crystal Structure Of Malonyl Coa-acyl Carrier Protein Transacylase From Thermus Thermophilus Hb8 Length = 305 Back     alignment and structure
>pdb|2H1Y|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein Transacylase (Mcat) From Helicobacter Pylori Length = 321 Back     alignment and structure
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 305 Back     alignment and structure
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase Length = 304 Back     alignment and structure
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase" Length = 317 Back     alignment and structure
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase Length = 3089 Back     alignment and structure
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The Iterative Polyketide Synthase In Enediyne Biosynthesis Reveals The Molecular Basis Of Substrate Specificity Length = 401 Back     alignment and structure
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The Iterative Polyketide Synthase In Enediyne Biosynthesis Reveals The Molecular Basis Of Substrate Specificity Length = 421 Back     alignment and structure
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The Iterative Polyketide Synthase In Enediyne Biosynthesis Reveals The Molecular Basis Of Substrate Specificity Length = 421 Back     alignment and structure
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis Length = 303 Back     alignment and structure
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd Length = 322 Back     alignment and structure
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid Synthase Type I Multienzyme Complex Length = 2051 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
2c2n_A339 Malonyl COA-acyl carrier protein transacylase; fat 5e-82
3k89_A 314 Malonyl COA-ACP transacylase; bacterial blight, XO 9e-68
3ptw_A 336 Malonyl COA-acyl carrier protein transacylase; str 9e-68
3qat_A 318 Malonyl COA-acyl carrier protein transacylase; sea 5e-67
3tqe_A 316 Malonyl-COA-[acyl-carrier-protein] transacylase; f 2e-66
2qc3_A303 MCT, malonyl COA-acyl carrier protein transacylase 3e-66
1mla_A309 Malonyl-coenzyme A acyl carrier protein transacyla 6e-66
3ezo_A 318 Malonyl COA-acyl carrier protein transacylase; ssg 2e-65
3sbm_A281 DISD protein, DSZD; transferase; HET: P6G; 1.35A { 3e-65
3im9_A316 MCAT, MCT, malonyl COA-acyl carrier protein transa 1e-64
3im8_A307 Malonyl acyl carrier protein transacylase; fatty a 2e-64
3g87_A 394 Malonyl COA-acyl carrier protein transacylase; ssg 1e-63
1nm2_A 317 Malonyl COA:acyl carrier protein malonyltransfera; 4e-63
2h1y_A 321 Malonyl coenzyme A-acyl carrier protein transacyl; 8e-63
2cuy_A 305 Malonyl COA-[acyl carrier protein] transacylase; t 4e-62
2uv8_G 2051 Fatty acid synthase subunit beta (FAS1); fatty aci 3e-38
2uv8_G 2051 Fatty acid synthase subunit beta (FAS1); fatty aci 2e-34
2uva_G 2060 Fatty acid synthase beta subunits; fungal, dehydra 2e-37
2uva_G 2060 Fatty acid synthase beta subunits; fungal, dehydra 1e-35
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 4e-23
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 1e-21
4amm_A 401 DYNE8; transferase; 1.40A {Micromonospora chersina 2e-21
2hg4_A 917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 2e-15
2qo3_A 915 Eryaii erythromycin polyketide synthase modules 3; 2e-15
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens} Length = 339 Back     alignment and structure
 Score =  247 bits (632), Expect = 5e-82
 Identities = 75/194 (38%), Positives = 108/194 (55%), Gaps = 6/194 (3%)

Query: 15  QGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSL 74
           QG+Q VGMG+   + P   ELY  A  +LG+DLLE+  +GP+E LD T+  QPAI+V SL
Sbjct: 34  QGSQVVGMGRGLLNYPRVRELYAAARRVLGYDLLELSLHGPQETLDRTVHCQPAIFVASL 93

Query: 75  AAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAAD 134
           AAVE L        +I++     G S+GE+ AL FAGA  F +GL  VK+R  AMQEA++
Sbjct: 94  AAVEKLHHLQP--SVIENCVAAAGFSVGEFAALVFAGAMEFAEGLYAVKIRAEAMQEASE 151

Query: 135 AAKGAMVSIIGLDSDKVQQLCDAANQEVD----EDNKVQIANYLCPGNYAVSGGVKGIEA 190
           A    M+S++G    K    C  A +       E+   +++NYL P    +SG  + +  
Sbjct: 152 AVPSGMLSVLGQPQSKFNFACLEAREHCKSLGIENPVCEVSNYLFPDCRVISGHQEALRF 211

Query: 191 VEAKAKSFKARMTV 204
           ++  +  F  R T 
Sbjct: 212 LQKNSSKFHFRRTR 225
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A* Length = 314 Back     alignment and structure
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens} Length = 336 Back     alignment and structure
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae} Length = 318 Back     alignment and structure
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii} Length = 316 Back     alignment and structure
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophili fatty acids biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A Length = 303 Back     alignment and structure
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A* Length = 309 Back     alignment and structure
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B} Length = 318 Back     alignment and structure
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium cellulosum} PDB: 3rgi_A Length = 281 Back     alignment and structure
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Length = 316 Back     alignment and structure
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae} Length = 307 Back     alignment and structure
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltran transferase; 2.30A {Burkholderia pseudomallei} Length = 394 Back     alignment and structure
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B Length = 317 Back     alignment and structure
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori} Length = 321 Back     alignment and structure
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Length = 305 Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Length = 2051 Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Length = 2051 Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Length = 2060 Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Length = 2060 Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 Back     alignment and structure
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A Length = 401 Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
3ezo_A 318 Malonyl COA-acyl carrier protein transacylase; ssg 100.0
3k89_A 314 Malonyl COA-ACP transacylase; bacterial blight, XO 100.0
3tqe_A 316 Malonyl-COA-[acyl-carrier-protein] transacylase; f 100.0
3ptw_A 336 Malonyl COA-acyl carrier protein transacylase; str 100.0
3im8_A307 Malonyl acyl carrier protein transacylase; fatty a 100.0
3qat_A 318 Malonyl COA-acyl carrier protein transacylase; sea 100.0
1mla_A309 Malonyl-coenzyme A acyl carrier protein transacyla 100.0
2h1y_A 321 Malonyl coenzyme A-acyl carrier protein transacyl; 100.0
3im9_A 316 MCAT, MCT, malonyl COA-acyl carrier protein transa 100.0
2cuy_A 305 Malonyl COA-[acyl carrier protein] transacylase; t 100.0
1nm2_A 317 Malonyl COA:acyl carrier protein malonyltransfera; 100.0
2qc3_A303 MCT, malonyl COA-acyl carrier protein transacylase 100.0
3tzy_A 491 Polyketide synthase PKS13; acyltransferase, long f 100.0
3g87_A 394 Malonyl COA-acyl carrier protein transacylase; ssg 100.0
3sbm_A281 DISD protein, DSZD; transferase; HET: P6G; 1.35A { 100.0
2c2n_A339 Malonyl COA-acyl carrier protein transacylase; fat 100.0
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 100.0
4amm_A 401 DYNE8; transferase; 1.40A {Micromonospora chersina 100.0
2hg4_A 917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 100.0
2qo3_A 915 Eryaii erythromycin polyketide synthase modules 3; 100.0
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 100.0
2uv8_G 2051 Fatty acid synthase subunit beta (FAS1); fatty aci 100.0
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 100.0
2uv8_G2051 Fatty acid synthase subunit beta (FAS1); fatty aci 100.0
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 100.0
2uva_G2060 Fatty acid synthase beta subunits; fungal, dehydra 100.0
2uva_G 2060 Fatty acid synthase beta subunits; fungal, dehydra 100.0
3qit_A286 CURM TE, polyketide synthase; thioesterase, alpha/ 87.71
1tqh_A247 Carboxylesterase precursor; tetrahedral intermedia 84.53
3bf7_A255 Esterase YBFF; thioesterase, helical CAP, hydrolas 83.56
1ehy_A294 Protein (soluble epoxide hydrolase); alpha/beta hy 83.1
3om8_A266 Probable hydrolase; structural genomics, PSI-2, pr 82.74
2wj6_A276 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid 82.45
2ocg_A254 Valacyclovir hydrolase; alpha beta hydrolase fold; 82.11
3v48_A268 Aminohydrolase, putative aminoacrylate hydrolase R 81.76
3bwx_A285 Alpha/beta hydrolase; YP_496220.1, joint center fo 81.44
1iup_A282 META-cleavage product hydrolase; aromatic compound 80.8
2xmz_A269 Hydrolase, alpha/beta hydrolase fold family; menaq 80.74
2puj_A286 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; 80.63
2xua_A266 PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate 80.6
1c4x_A285 BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di 80.59
4akf_A 577 VIPD; transferase; 2.90A {Legionella pneumophila} 80.58
1wom_A271 RSBQ, sigma factor SIGB regulation protein RSBQ; a 80.57
1tht_A305 Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. 80.47
2yys_A286 Proline iminopeptidase-related protein; TTHA1809, 80.26
2wue_A291 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas 80.1
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B} Back     alignment and structure
Probab=100.00  E-value=3.8e-51  Score=340.21  Aligned_cols=206  Identities=32%  Similarity=0.488  Sum_probs=191.0

Q ss_pred             CCCcEEEEEcCcccchHHhhHh-hhccHHHHHHHHHHHHHcCCChHHHhhcCCCccccCccchhhHHHHHHHHHHHHHHH
Q 027514            4 ARSLLLFYVLSQGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRA   82 (222)
Q Consensus         4 ~~~~~~~~F~GqG~~~~~~~~~-~~~~p~~~~~~~~~~~~lg~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~l~~   82 (222)
                      .++|++|+|||||+||++|+++ | .+|.||+.+++|++++|+++.+++++++...+.++.++||++|++|++++++|++
T Consensus         7 ~~~~~~f~F~GQGsQ~~gMg~~L~-~~p~fr~~~~~~~~~lg~~l~~~~~~~~~~~l~~t~~~Qpai~a~~~al~~~l~~   85 (318)
T 3ezo_A            7 HHMKFAFVFPGQGSQSVGMLNAFA-DVAVVRETLDEASDALGQDIGKLIADGPADELNLTTNTQPVMLTAAYACYRAWQQ   85 (318)
T ss_dssp             --CCEEEEECCTTCCCTTTTGGGT-TCHHHHHHHHHHHHHHSSCHHHHHHHCCHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEECCcchhhhhHHHHHh-hCHHHHHHHHHHHHHhCCCHHHHhhCCCHhHhccchhHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999 6 9999999999999999999999998877777899999999999999999999998


Q ss_pred             hcCCCCcccCccEEeeccHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccCCCceEEEcCCCHHHHHHHHHHhcccC
Q 027514           83 RDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEV  162 (222)
Q Consensus        83 ~~~gi~~~~~p~~~~G~S~Ge~~A~~~aG~~~~~~a~~~~~~r~~~~~~~~~~~~g~m~av~~~~~~~~~~~l~~~~~~~  162 (222)
                      +. |+    +|++++|||+||++|+|++|++|++|++++++.|+++|++......|.|++|.+++.+++++++++.+.  
T Consensus        86 ~~-Gi----~P~~v~GHSlGE~aAa~~AG~ls~edal~lv~~Rg~lm~~~~~~~~G~M~aV~~~~~~~v~~~l~~~~~--  158 (318)
T 3ezo_A           86 AG-GA----QPSIVAGHSLGEYTALVAAGAIAFRDALPLVRFRAQAMQTAVPVGVGGMAAILGLDDDTVRAVCAEASA--  158 (318)
T ss_dssp             TT-CC----CCSEEEESTHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSSCTTSEEEEEEESCCHHHHHHHHHHHGG--
T ss_pred             cc-CC----CCcEEEECCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhcCC--
Confidence            65 88    999999999999999999999999999999999999999975556789999999999999999988643  


Q ss_pred             CCCCcEEEEEeeCCCCEEEEcCHHHHHHHHHHHHhcCCCceEEccccCCCCCCCCCCC
Q 027514          163 DEDNKVQIANYLCPGNYAVSGGVKGIEAVEAKAKSFKARMTVISSFICIPIQCHPCTS  220 (222)
Q Consensus       163 ~~~~~~~ia~~ns~~~~visG~~~~l~~l~~~l~~~~~~~~~~L~~~~~p~Hs~~~~~  220 (222)
                        .++++|+++|+|+++||||+.+.++++.+.+++.|++++++|++. .|||||+|.+
T Consensus       159 --~~~v~iA~~Nsp~~~VisG~~~~l~~~~~~l~~~g~~~~~~L~v~-~afHS~~m~~  213 (318)
T 3ezo_A          159 --TGVVEAVNFNAPAQVVIAGTKAGIEKACEIAKEKGAKRALPLPVS-APFHSSLLKP  213 (318)
T ss_dssp             --GSCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHTTCSEEEECSCS-SCTTSGGGHH
T ss_pred             --CCeEEEEEEcCCCCEEEeCCHHHHHHHHHHHHhCCCceEEECCCC-CCcChHHHHH
Confidence              346999999999999999999999999999999998789999999 9999999863
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A* Back     alignment and structure
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii} Back     alignment and structure
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens} Back     alignment and structure
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae} Back     alignment and structure
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae} Back     alignment and structure
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A* Back     alignment and structure
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori} Back     alignment and structure
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Back     alignment and structure
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Back     alignment and structure
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B Back     alignment and structure
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophili fatty acids biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A Back     alignment and structure
>3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A* Back     alignment and structure
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltran transferase; 2.30A {Burkholderia pseudomallei} Back     alignment and structure
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium cellulosum} PDB: 3rgi_A Back     alignment and structure
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens} Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Back     alignment and structure
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Back     alignment and structure
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} Back     alignment and structure
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A Back     alignment and structure
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A Back     alignment and structure
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 Back     alignment and structure
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 Back     alignment and structure
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* Back     alignment and structure
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A Back     alignment and structure
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} Back     alignment and structure
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} Back     alignment and structure
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A Back     alignment and structure
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} Back     alignment and structure
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A Back     alignment and structure
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} Back     alignment and structure
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 Back     alignment and structure
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila} Back     alignment and structure
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* Back     alignment and structure
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Back     alignment and structure
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} Back     alignment and structure
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 222
d1nm2a1253 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of m 7e-21
d1mlaa1235 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of m 2e-19
d1mlaa270 d.58.23.1 (A:128-197) Probable ACP-binding domain 4e-10
d1nm2a262 d.58.23.1 (A:134-195) Probable ACP-binding domain 6e-07
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Length = 253 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: FabD-like
domain: Catalytic domain of malonyl-CoA ACP transacylase FabD
species: Streptomyces coelicolor A3(2) [TaxId: 100226]

 Score = 85.7 bits (211), Expect = 7e-21
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 15  QGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSL 74
           QGAQ  G   +  ++P AA+     +D +G DL    T    +++  T ++QP +    +
Sbjct: 10  QGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPLLVAAGI 69

Query: 75  AAVELLRARDGGQQIIDSV---DVTCGLSLGEYTALAFAGAFSFED 117
            +   L  +                 G S+GE TA  FAG      
Sbjct: 70  LSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTA 115
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Length = 235 Back     information, alignment and structure
>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Escherichia coli [TaxId: 562]} Length = 70 Back     information, alignment and structure
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Streptomyces coelicolor A3(2) [TaxId: 100226]} Length = 62 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
d1mlaa1235 Catalytic domain of malonyl-CoA ACP transacylase F 99.97
d1nm2a1253 Catalytic domain of malonyl-CoA ACP transacylase F 99.95
d1mlaa270 Probable ACP-binding domain of malonyl-CoA ACP tra 99.61
d1nm2a262 Probable ACP-binding domain of malonyl-CoA ACP tra 99.28
d1ehya_293 Bacterial epoxide hydrolase {Agrobacterium radioba 87.97
d1k8qa_ 377 Gastric lipase {Dog (Canis familiaris) [TaxId: 961 82.19
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: FabD-like
domain: Catalytic domain of malonyl-CoA ACP transacylase FabD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.6e-32  Score=216.96  Aligned_cols=146  Identities=34%  Similarity=0.524  Sum_probs=124.9

Q ss_pred             cEEEEEcCcccchHHhhHh-hhccHHHHHHHHHHHHHcCCChHHHhhcCCCccccCccchhhHHHHHHHHHHHHHHHhcC
Q 027514            7 LLLFYVLSQGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDG   85 (222)
Q Consensus         7 ~~~~~F~GqG~~~~~~~~~-~~~~p~~~~~~~~~~~~lg~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~l~~~~~   85 (222)
                      +++|+|||||+||++|+++ |.++|.||+.++++++++|+++.+.+...+...+.++.+.|++++++|++++++|+++. 
T Consensus         1 q~AfvFpGQGsQ~~gMg~~L~~~~p~~r~~~~~~~~~l~~~l~~~~~~~~~~~~~~t~~~qpai~~~~~al~~~l~~~~-   79 (235)
T d1mlaa1           1 QFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPALLTASVALYRVWQQQG-   79 (235)
T ss_dssp             CEEEEECCTTCCCTTTTHHHHHHCHHHHHHHHHHHHHHTSCHHHHHHHCCHHHHTSHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             CEEEEeCChhhhHHHHHHHHHHCCHHHHHHHHHHHHHhCCCHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            4799999999999999999 68999999999999999999999988877777788899999999999999999999875 


Q ss_pred             CCCcccCccEEeeccHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccCCCceEEEcCCCHHHHHHHHHHh
Q 027514           86 GQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAA  158 (222)
Q Consensus        86 gi~~~~~p~~~~G~S~Ge~~A~~~aG~~~~~~a~~~~~~r~~~~~~~~~~~~g~m~av~~~~~~~~~~~l~~~  158 (222)
                      |+    +|++++|||+||++|++++|+++++++++++..|+.+|+......+...-.+ ....+++++.+++.
T Consensus        80 g~----~p~~v~GhSlGE~aAl~~aG~ls~e~~~~lv~~Rg~~m~~~~~~~pfHs~~m-~~~~~~~~~~l~~v  147 (235)
T d1mlaa1          80 GK----APAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQEAVPEVPSHCALM-KPAADKLAVELAKI  147 (235)
T ss_dssp             CC----CCSEEEESTHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHSCTSCTTSGGG-HHHHHHHHHHHHTS
T ss_pred             CC----CceeeeeccchHHHHHHHcCCcccccHHHHHHHHHHHHHHcCCCCcchhHHh-hhhHHHHHHHHhcC
Confidence            88    9999999999999999999999999999999999999998753322211111 22335666666654
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Back     information, alignment and structure
>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Streptomyces coelicolor A3(2) [TaxId: 100226]} Back     information, alignment and structure
>d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} Back     information, alignment and structure
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure