Citrus Sinensis ID: 027517
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 222 | 2.2.26 [Sep-21-2011] | |||||||
| Q3ED65 | 261 | 2-phytyl-1,4-beta-naphtho | yes | no | 0.963 | 0.819 | 0.719 | 4e-90 | |
| Q8YLP4 | 229 | Demethylmenaquinone methy | yes | no | 0.954 | 0.925 | 0.495 | 2e-59 | |
| P72818 | 238 | Demethylmenaquinone methy | N/A | no | 0.950 | 0.886 | 0.511 | 2e-59 | |
| Q3MD91 | 229 | Demethylmenaquinone methy | yes | no | 0.945 | 0.917 | 0.490 | 8e-59 | |
| B2IUM7 | 230 | Demethylmenaquinone methy | yes | no | 0.945 | 0.913 | 0.504 | 3e-57 | |
| Q5N4X9 | 233 | Demethylmenaquinone methy | yes | no | 0.936 | 0.892 | 0.533 | 7e-57 | |
| Q31P90 | 233 | Demethylmenaquinone methy | yes | no | 0.936 | 0.892 | 0.533 | 7e-57 | |
| Q8DGE4 | 225 | Demethylmenaquinone methy | yes | no | 0.941 | 0.928 | 0.490 | 6e-55 | |
| A0Q549 | 250 | Ubiquinone/menaquinone bi | yes | no | 0.923 | 0.82 | 0.403 | 1e-39 | |
| B2SFA2 | 250 | Ubiquinone/menaquinone bi | yes | no | 0.923 | 0.82 | 0.403 | 2e-39 |
| >sp|Q3ED65|MENG_ARATH 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=MENG PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 330 bits (846), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 154/214 (71%), Positives = 183/214 (85%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
LNDLLS GQHRIWK MAVSWSGAK GD VLD+CCGSGDL+FLLSE+VGS GKV+GLDFS
Sbjct: 48 NLNDLLSLGQHRIWKNMAVSWSGAKKGDYVLDLCCGSGDLAFLLSEKVGSTGKVMGLDFS 107
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
QL++A++RQ L +++CYK IEW+EGDA+DLPF DC FDA+TMGYGLRNVVD+ +A++E
Sbjct: 108 SEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKE 167
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
+RVLKPGSR+S+LDFNKS Q TT +Q WMIDNVVVPVA+ Y LA+EY+YLK SI +L
Sbjct: 168 MYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYL 227
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
TG++LE LALE GFS A HYE+SGG MGNLVA R
Sbjct: 228 TGEELETLALEAGFSSACHYEISGGFMGNLVAMR 261
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Involved in the biosynthesis of phylloquinone (vitamin K1). Methyltransferase required for the conversion of 2-phytyl-1,4-beta-naphthoquinone to phylloquinone. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1EC: 2 |
| >sp|Q8YLP4|UBIE_NOSS1 Demethylmenaquinone methyltransferase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 145/214 (67%), Gaps = 2/214 (0%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
QLND LS GQHRIWK MA+ W+GAK GD LD+CCGSGDL+ L+ +VGS G+V G+DFS
Sbjct: 18 QLNDWLSLGQHRIWKEMAIKWTGAKPGDTCLDLCCGSGDLALRLARRVGSTGQVSGVDFS 77
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
N L A R S+ NI WVE + LDLPF D FDA TMGYGLRNV D ++L+E
Sbjct: 78 ANLLETAKQRAQ--SQYPQPNISWVEANVLDLPFKDNQFDAATMGYGLRNVTDIPRSLQE 135
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
RVLKP ++ ++LDF++ Q+W +D++VVP+A G+ EEY Y+ S+ F
Sbjct: 136 LHRVLKPNAKAAILDFHRPNNQQFRTFQQWYLDSIVVPLADRLGVKEEYAYISPSLDRFP 195
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
GK+ ++AL++GF+ A HY ++ G+MG L+ ++
Sbjct: 196 IGKEQVEIALKVGFTSATHYPIANGMMGVLIISK 229
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|P72818|UBIE_SYNY3 Demethylmenaquinone methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (582), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 109/213 (51%), Positives = 145/213 (68%), Gaps = 2/213 (0%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
LN LSFGQH IWK MAV WSG GD +LDVCCGSGDL+F ++ VG++GKV+GLDF
Sbjct: 28 LNTFLSFGQHHIWKAMAVKWSGVSPGDRLLDVCCGSGDLAFQGAKVVGTRGKVVGLDFCA 87
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
L++A+ + SK + ++W++GDAL LPFSD FD TMGYGLRNV + +AL E
Sbjct: 88 ELLAIAAGKHK--SKYAHLPMQWLQGDALALPFSDNEFDGATMGYGLRNVGNIPQALTEL 145
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLT 189
RVLKPG ++++LDF++ Q W + NVVVP+A + L EEY YL+ S+ F T
Sbjct: 146 QRVLKPGKKVAILDFHQPGNALAANFQRWYLANVVVPMAKQWRLTEEYAYLQPSLDRFPT 205
Query: 190 GKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
G + ALE+GF++A HY ++ GLMG LVA +
Sbjct: 206 GPKQVQFALEVGFAKAVHYPIAAGLMGVLVAEK 238
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q3MD91|UBIE_ANAVT Demethylmenaquinone methyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (577), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 147/216 (68%), Gaps = 6/216 (2%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
QLND LS GQHRIWK MA+ W+GAK GD LD+CCGSGDL+ L+ +VGS G+V G+DFS
Sbjct: 18 QLNDWLSLGQHRIWKEMAIKWTGAKPGDTCLDLCCGSGDLALRLARRVGSTGQVYGVDFS 77
Query: 69 KNQLSMASSRQDLVSKACYK--NIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKAL 126
N L A R ++A Y +I WVE + LDLPF D FDA TMGYGLRNV D ++L
Sbjct: 78 ANLLETAKQR----AQAQYPQPHISWVEANVLDLPFEDNQFDAATMGYGLRNVTDIPRSL 133
Query: 127 EESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 186
+E RVLKP ++ ++LDF++ Q+W +D++VVP+A G+ EEY Y+ S+
Sbjct: 134 QELRRVLKPNAKAAILDFHRPNNQQFRTFQQWYLDSIVVPLADRLGVKEEYAYISPSLDR 193
Query: 187 FLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
F GK+ ++AL++GF+ A HY ++ G+MG L+ ++
Sbjct: 194 FPIGKEQVEIALQVGFTSATHYPIANGMMGVLIISK 229
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|B2IUM7|UBIE_NOSP7 Demethylmenaquinone methyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 146/216 (67%), Gaps = 6/216 (2%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
QLND LS GQHRIWK MAV WS AK+G+ LD+CCGSGDL+ L+ +VG+ G V G+DFS
Sbjct: 18 QLNDWLSLGQHRIWKEMAVKWSAAKSGNTALDLCCGSGDLALRLARRVGATGYVYGVDFS 77
Query: 69 KNQLSMASSRQDLVSKACYKN--IEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKAL 126
N L A R S+ Y I WVE D L+LPF D FDA TMGYGLRNV D ++L
Sbjct: 78 CNLLETAKER----SQKQYPQPAIAWVEADVLNLPFDDNQFDAATMGYGLRNVKDIPRSL 133
Query: 127 EESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 186
+E RVLKPG++ ++LDF++ + P A Q+ +++ VVPVA+ GL EEY Y+ S+
Sbjct: 134 QELHRVLKPGAKAAILDFHRPSNPQLRAFQQLYLNSFVVPVANYLGLKEEYAYISPSLDR 193
Query: 187 FLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
F GK+ +LA ++GF+ A HY ++ G+MG LV ++
Sbjct: 194 FPIGKEQIELARQVGFAVATHYPIANGMMGVLVVSK 229
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q5N4X9|UBIE_SYNP6 Demethylmenaquinone methyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/210 (53%), Positives = 141/210 (67%), Gaps = 2/210 (0%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
LND LSFG HR+WKRMAV WS AK GD VLD+CCGSGDL+FLL++ VGS+G+VIG D S+
Sbjct: 23 LNDQLSFGLHRLWKRMAVKWSAAKPGDRVLDLCCGSGDLAFLLAKVVGSKGQVIGFDRSQ 82
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
LS+A R ++ A I+W GDALDLPF D FDA T+GYGLRNV D L +
Sbjct: 83 ALLSVAGDRARQLASALV--IDWQRGDALDLPFPDDHFDAATLGYGLRNVPDIPTVLRQL 140
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLT 189
RVLKPG+R ++LD ++ P Q+ +D VVP A+ A EY+Y+ +S+ F
Sbjct: 141 QRVLKPGARAAILDMHRPYSPLLRQFQQVYLDRWVVPAAAAQNCAAEYEYIDASLEAFPQ 200
Query: 190 GKDLEKLALEIGFSRAKHYELSGGLMGNLV 219
G+ LA+ GF RAKHYEL+ GLMG LV
Sbjct: 201 GQQQVALAIAAGFQRAKHYELAAGLMGVLV 230
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q31P90|UBIE_SYNE7 Demethylmenaquinone methyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/210 (53%), Positives = 141/210 (67%), Gaps = 2/210 (0%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
LND LSFG HR+WKRMAV WS AK GD VLD+CCGSGDL+FLL++ VGS+G+VIG D S+
Sbjct: 23 LNDQLSFGLHRLWKRMAVKWSAAKPGDRVLDLCCGSGDLAFLLAKVVGSKGQVIGFDRSQ 82
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
LS+A R ++ A I+W GDALDLPF D FDA T+GYGLRNV D L +
Sbjct: 83 ALLSVAGDRARQLASALV--IDWQRGDALDLPFPDDHFDAATLGYGLRNVPDIPTVLRQL 140
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLT 189
RVLKPG+R ++LD ++ P Q+ +D VVP A+ A EY+Y+ +S+ F
Sbjct: 141 QRVLKPGARAAILDMHRPYSPLLRQFQQVYLDRWVVPAAAAQNCAAEYEYIDASLEAFPQ 200
Query: 190 GKDLEKLALEIGFSRAKHYELSGGLMGNLV 219
G+ LA+ GF RAKHYEL+ GLMG LV
Sbjct: 201 GQQQVALAIAAGFQRAKHYELAAGLMGVLV 230
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q8DGE4|UBIE_THEEB Demethylmenaquinone methyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/214 (49%), Positives = 133/214 (62%), Gaps = 5/214 (2%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
+LND LSFG H +WK+MAV W G LD+CCG+GDL+ LL+ +VG QG+V+GLDF+
Sbjct: 17 RLNDQLSFGLHHVWKQMAVDWLELPQGATALDLCCGTGDLTRLLARRVGRQGRVVGLDFA 76
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
L++A R D Y IEW++GDAL +PF+ F IT+GYGLRNVVD +AL E
Sbjct: 77 AAPLAIARQRSD-----HYPQIEWLQGDALAVPFAPQTFQGITIGYGLRNVVDIPQALRE 131
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
FR+L PG R ++LDF+ Q+W + VVP A YGLA EY YL SI+ F
Sbjct: 132 MFRLLVPGGRAAILDFSHPQTSALEQFQQWYLQQWVVPTARHYGLAAEYDYLWPSIQAFP 191
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
T L L + GF R KHY L GGLM VA +
Sbjct: 192 TPPTLCALIQQAGFERVKHYPLLGGLMAITVAQK 225
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|A0Q549|UBIE_FRATN Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Francisella tularensis subsp. novicida (strain U112) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 127/208 (61%), Gaps = 3/208 (1%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
+NDL+SFG HRIWK+ ++ SG + GDNVLD+ G+GDL++ + VG QGKVI D +
Sbjct: 38 MNDLMSFGIHRIWKKQTIAKSGVRKGDNVLDLAGGTGDLAYKFCQMVGQQGKVILSDINS 97
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
+ L + ++ L +K C NIE+V+ +A LPF D +FD IT+ +GLRNV DK KAL
Sbjct: 98 SMLEVG--KEKLTNKGCVGNIEYVQANAECLPFPDNYFDCITISFGLRNVTDKEKALASM 155
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAI-QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
RVLKPG R+ VL+F+K P + + E+ + AE Y+YL SIR+
Sbjct: 156 CRVLKPGGRLLVLEFSKPIIPLLSKVYDEYSFKALPFLGKIITQDAESYKYLAESIRKHP 215
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLMG 216
+ L+++ + GF ++ ++GG++
Sbjct: 216 DQQTLKQMMYDAGFDNVEYQNMTGGIVA 243
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Francisella tularensis subsp. novicida (strain U112) (taxid: 401614) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|B2SFA2|UBIE_FRATM Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 127/208 (61%), Gaps = 3/208 (1%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
+NDL+SFG HRIWK+ ++ SG + GDNVLD+ G+GDL++ + VG QGKVI D +
Sbjct: 38 MNDLMSFGIHRIWKKQTIAKSGVRKGDNVLDLAGGTGDLAYKFCQMVGQQGKVILSDINS 97
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
+ L + ++ L +K C NIE+V+ +A LPF D +FD IT+ +GLRNV DK KAL
Sbjct: 98 SMLEVG--KEKLTNKGCVGNIEYVQANAECLPFPDNYFDCITISFGLRNVTDKDKALASM 155
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAI-QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
RVLKPG R+ VL+F+K P + + E+ + AE Y+YL SIR+
Sbjct: 156 CRVLKPGGRLLVLEFSKPIIPLLSKVYDEYSFKALPFLGKIITQDAESYKYLAESIRKHP 215
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLMG 216
+ L+++ + GF ++ ++GG++
Sbjct: 216 DQQTLKQMMYDAGFDNVEYQNMTGGIVA 243
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Francisella tularensis subsp. mediasiatica (strain FSC147) (taxid: 441952) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 222 | ||||||
| 359473246 | 258 | PREDICTED: 2-phytyl-1,4-naphtoquinone me | 0.963 | 0.829 | 0.803 | 1e-100 | |
| 224102453 | 230 | predicted protein [Populus trichocarpa] | 0.963 | 0.930 | 0.813 | 1e-100 | |
| 359473244 | 259 | PREDICTED: LOW QUALITY PROTEIN: 2-phytyl | 0.963 | 0.826 | 0.795 | 7e-99 | |
| 356501994 | 252 | PREDICTED: 2-phytyl-1,4-naphtoquinone me | 0.963 | 0.849 | 0.789 | 8e-96 | |
| 356497551 | 253 | PREDICTED: 2-phytyl-1,4-naphtoquinone me | 0.963 | 0.845 | 0.775 | 1e-93 | |
| 255638241 | 253 | unknown [Glycine max] | 0.963 | 0.845 | 0.775 | 2e-93 | |
| 297850802 | 262 | UbiE/COQ5 methyltransferase family prote | 0.963 | 0.816 | 0.742 | 5e-92 | |
| 449450442 | 251 | PREDICTED: 2-phytyl-1,4-beta-naphthoquin | 0.959 | 0.848 | 0.760 | 6e-91 | |
| 89953328 | 265 | Fgenesh protein 2 [Beta vulgaris] | 0.959 | 0.803 | 0.723 | 7e-90 | |
| 357485787 | 270 | Menaquinone biosynthesis methyltransfera | 0.945 | 0.777 | 0.759 | 1e-88 |
| >gi|359473246|ref|XP_002269864.2| PREDICTED: 2-phytyl-1,4-naphtoquinone methyltransferase, chloroplastic-like [Vitis vinifera] gi|297739088|emb|CBI28577.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/214 (80%), Positives = 196/214 (91%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
LND LS GQHRIWKRMAVSWSGAK GD+VLD+CCGSGDL+FLLSE+VGS GKVIG DFS
Sbjct: 45 NLNDFLSLGQHRIWKRMAVSWSGAKRGDDVLDLCCGSGDLAFLLSERVGSDGKVIGFDFS 104
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
+ QLS+ASSRQ L+SKACYKNIEW+EGDA LPFSDC FDAITMGYGLRNV+D+ KA++E
Sbjct: 105 REQLSVASSRQHLLSKACYKNIEWIEGDATKLPFSDCSFDAITMGYGLRNVLDRGKAMQE 164
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
FRVLKPGSR+S+LDFNKST+PF T+IQEWMIDNVVVPVA+GYGLA+EY YLKSS++EFL
Sbjct: 165 MFRVLKPGSRVSILDFNKSTKPFITSIQEWMIDNVVVPVATGYGLADEYAYLKSSVQEFL 224
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
TGK+LEKLALE+GFS AKHYE+ GG+MGNLVA R
Sbjct: 225 TGKELEKLALEMGFSNAKHYEIGGGIMGNLVAKR 258
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102453|ref|XP_002312683.1| predicted protein [Populus trichocarpa] gi|222852503|gb|EEE90050.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/214 (81%), Positives = 192/214 (89%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
LNDLLS GQHRIWKRMAVSW+GAK GD VLD+CCGSGDL+FLLSE+VGS GKV GLDFS
Sbjct: 17 NLNDLLSLGQHRIWKRMAVSWTGAKLGDCVLDLCCGSGDLAFLLSEKVGSNGKVSGLDFS 76
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
K QL MASSRQ L+SKACYKNIEW+EGDA +LPF DC+FDAITMGYGLRNVVDKRKA++E
Sbjct: 77 KEQLLMASSRQHLLSKACYKNIEWIEGDATELPFPDCYFDAITMGYGLRNVVDKRKAVQE 136
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
FRVLKPGS+ SVLDFNKSTQPF + QEWMIDN VVPVA+ YGLA+EY+YLK SIREFL
Sbjct: 137 MFRVLKPGSKASVLDFNKSTQPFVASFQEWMIDNAVVPVATAYGLAKEYEYLKGSIREFL 196
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
TG +LE+LALE GFS AKHYE+SGGLMGNLVATR
Sbjct: 197 TGNELEELALEAGFSTAKHYEISGGLMGNLVATR 230
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473244|ref|XP_003631276.1| PREDICTED: LOW QUALITY PROTEIN: 2-phytyl-1,4-naphtoquinone methyltransferase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 365 bits (937), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 171/215 (79%), Positives = 195/215 (90%), Gaps = 1/215 (0%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
LND LS GQHRIWKRMAVSWSGAK GDNVLD+CCGSGDL+FLLSE+VGS GKVIG DFS
Sbjct: 45 NLNDFLSLGQHRIWKRMAVSWSGAKRGDNVLDLCCGSGDLAFLLSERVGSDGKVIGFDFS 104
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
+ QLS+AS RQ L+SKACYKNIEW+EGDA++LPFSDC FDAITMGYGLRNV D+ KA++E
Sbjct: 105 RKQLSVASLRQHLLSKACYKNIEWIEGDAIELPFSDCSFDAITMGYGLRNVFDRCKAMQE 164
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTA-IQEWMIDNVVVPVASGYGLAEEYQYLKSSIREF 187
FRVLKPGSR+S+LDFNKST+PF T+ I+EWMI+NVVVPVA+GYGLAEEY YLKS ++EF
Sbjct: 165 MFRVLKPGSRVSILDFNKSTKPFITSIIKEWMIENVVVPVATGYGLAEEYAYLKSPVQEF 224
Query: 188 LTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
LTGK+LEKLALE GFS AKHYE+ GG+MGNLVATR
Sbjct: 225 LTGKELEKLALETGFSHAKHYEIGGGIMGNLVATR 259
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501994|ref|XP_003519807.1| PREDICTED: 2-phytyl-1,4-naphtoquinone methyltransferase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 355 bits (911), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 169/214 (78%), Positives = 191/214 (89%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
LNDLLS GQHRIWKRMAVSW+GAK GD VLDVCCGSGDLSFLLS+QVGS GKVIGLDFS
Sbjct: 39 NLNDLLSLGQHRIWKRMAVSWTGAKMGDRVLDVCCGSGDLSFLLSDQVGSHGKVIGLDFS 98
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
K+QL ASSRQ+ +SK C+ NIEWVEGDALDLPFSD +FDAITMGYGLRNVVDK+KA++E
Sbjct: 99 KDQLLFASSRQESLSKNCFTNIEWVEGDALDLPFSDGWFDAITMGYGLRNVVDKQKAMQE 158
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
FRVLK GS +S+LDFNKS + T+A EWMIDN+VVPVA+GYGL+EEY+YLKSSIREFL
Sbjct: 159 IFRVLKTGSTVSILDFNKSNELLTSAFTEWMIDNIVVPVATGYGLSEEYRYLKSSIREFL 218
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
TGK+LEKLALE+GFS A+HYE+ GGLMG LVA R
Sbjct: 219 TGKELEKLALEVGFSAARHYEIGGGLMGCLVAKR 252
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497551|ref|XP_003517623.1| PREDICTED: 2-phytyl-1,4-naphtoquinone methyltransferase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 166/214 (77%), Positives = 189/214 (88%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
LNDLLS GQHRIWKRMAVSW+GAK GD VLDVCCGSGDLSFLLS++VGS GKVIGLDFS
Sbjct: 40 NLNDLLSLGQHRIWKRMAVSWTGAKMGDCVLDVCCGSGDLSFLLSDKVGSHGKVIGLDFS 99
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
K+QLS A SRQ +SK C+ NIEWVEGDALDLPFSD +FDAITMGYGLRNVVDK+KA++E
Sbjct: 100 KDQLSFALSRQQSLSKNCFMNIEWVEGDALDLPFSDGWFDAITMGYGLRNVVDKQKAMQE 159
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
FRVLK GS +S+LDFNKS + T+A+ EWMIDN+VVPVA+GYGL+EEY+YLK SIREFL
Sbjct: 160 IFRVLKTGSTVSILDFNKSNELLTSAVTEWMIDNIVVPVATGYGLSEEYRYLKRSIREFL 219
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
TGK+LEKLAL +GFS A+HYE+ GGLMG LVA R
Sbjct: 220 TGKELEKLALGVGFSAARHYEIGGGLMGCLVAKR 253
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255638241|gb|ACU19434.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 166/214 (77%), Positives = 188/214 (87%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
LNDLLS GQHRIWKRMAVSW+GAK GD VLDVCCGSGDLSFLLS++VGS GKVIGLDFS
Sbjct: 40 NLNDLLSLGQHRIWKRMAVSWTGAKMGDCVLDVCCGSGDLSFLLSDKVGSHGKVIGLDFS 99
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
K+QLS A SRQ +SK C+ NIEWVEGDALDLPFSD FDAITMGYGLRNVVDK+KA++E
Sbjct: 100 KDQLSFALSRQQSLSKNCFMNIEWVEGDALDLPFSDGRFDAITMGYGLRNVVDKQKAMQE 159
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
FRVLK GS +S+LDFNKS + T+A+ EWMIDN+VVPVA+GYGL+EEY+YLK SIREFL
Sbjct: 160 IFRVLKTGSTVSILDFNKSNELLTSAVTEWMIDNIVVPVATGYGLSEEYRYLKRSIREFL 219
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
TGK+LEKLAL +GFS A+HYE+ GGLMG LVA R
Sbjct: 220 TGKELEKLALGVGFSAARHYEIGGGLMGCLVAKR 253
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850802|ref|XP_002893282.1| UbiE/COQ5 methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297339124|gb|EFH69541.1| UbiE/COQ5 methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 342 bits (878), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 159/214 (74%), Positives = 188/214 (87%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
LNDLLSFGQHRIWK M VSWSGAKTGDNVLD+CCGSGDL+FLLSE+VGS GKV+GLDFS
Sbjct: 49 NLNDLLSFGQHRIWKNMTVSWSGAKTGDNVLDLCCGSGDLAFLLSEKVGSTGKVLGLDFS 108
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
QL++A+SRQ+L +++CYK IEW+EGDA+DLPF DC FDAITMGYGLRNVVD+ +A++E
Sbjct: 109 SEQLAVAASRQNLKARSCYKCIEWIEGDAIDLPFDDCEFDAITMGYGLRNVVDRLRAMKE 168
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
+RVLKPGSR+S+LDFNKS Q TT +Q+WMIDNVVVPVA+ YGLA+EY+YLK SI +L
Sbjct: 169 MYRVLKPGSRVSILDFNKSNQSVTTFMQDWMIDNVVVPVATVYGLAKEYEYLKYSINGYL 228
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
TG++LE LALE GFS A HYE+SGG MGNLVA R
Sbjct: 229 TGEELETLALEAGFSSACHYEISGGFMGNLVAER 262
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450442|ref|XP_004142971.1| PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic-like [Cucumis sativus] gi|449500314|ref|XP_004161063.1| PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 339 bits (869), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 162/213 (76%), Positives = 184/213 (86%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
LND LS GQHRIWKRMAVSW+ AK GD VLD+CCGSGDL+FLLS++VGS GKV GLDFS
Sbjct: 39 LNDFLSLGQHRIWKRMAVSWTCAKPGDCVLDICCGSGDLAFLLSQKVGSTGKVTGLDFSW 98
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
QLS+ASSRQ +SK CY+NIEWVEGDAL+LPF DC FDAITMGYGLRNVVDKRKAL E
Sbjct: 99 EQLSIASSRQRSLSKPCYENIEWVEGDALNLPFPDCSFDAITMGYGLRNVVDKRKALGEI 158
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLT 189
RVLK GS+ S+LDFNK+TQP AIQEWMI+N+VVPVAS YGLA++Y+YL SI EF T
Sbjct: 159 LRVLKEGSKASILDFNKTTQPTIAAIQEWMINNIVVPVASSYGLADDYRYLSKSISEFST 218
Query: 190 GKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
GK+LE+LALE+GFS + HYELSGGLMGNLVA+R
Sbjct: 219 GKELEELALEVGFSTSIHYELSGGLMGNLVASR 251
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|89953328|gb|ABD83274.1| Fgenesh protein 2 [Beta vulgaris] | Back alignment and taxonomy information |
|---|
Score = 335 bits (859), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 154/213 (72%), Positives = 187/213 (87%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
LND+LS GQHRIWKRMAVSW+GAK GD+ LD+CCGSGDL+FLLSE+VG G+V+GLDFS
Sbjct: 53 LNDVLSLGQHRIWKRMAVSWTGAKRGDSTLDICCGSGDLAFLLSEKVGLDGQVMGLDFSS 112
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
+QL +ASSRQ S CYKNIEW+EGDAL+LPF D +FDAITMGYGLRNV+DK +A+++
Sbjct: 113 DQLLVASSRQQESSTPCYKNIEWLEGDALNLPFRDDYFDAITMGYGLRNVMDKERAMQQI 172
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLT 189
FRVLKPG + S+LDFNKS +P T+ IQEWMID++VVPVA+G+GLAEEY+YLKSSI+EFLT
Sbjct: 173 FRVLKPGCKASILDFNKSREPITSLIQEWMIDSIVVPVATGFGLAEEYKYLKSSIQEFLT 232
Query: 190 GKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
GK+LE+LA +GFS AK YE++GGLMGNLV TR
Sbjct: 233 GKELEQLAFAVGFSDAKFYEIAGGLMGNLVVTR 265
|
Source: Beta vulgaris Species: Beta vulgaris Genus: Beta Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357485787|ref|XP_003613181.1| Menaquinone biosynthesis methyltransferase ubiE [Medicago truncatula] gi|355514516|gb|AES96139.1| Menaquinone biosynthesis methyltransferase ubiE [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 161/212 (75%), Positives = 181/212 (85%), Gaps = 2/212 (0%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
LNDLLS GQHRIWKRMAVSW+ AK GD VLDVCCGSGDLSFLLS +V S GKVIGLDFS
Sbjct: 59 NLNDLLSLGQHRIWKRMAVSWTEAKKGDRVLDVCCGSGDLSFLLSNKVASNGKVIGLDFS 118
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
K QL +ASSR S C+ NIEWVEGDALDLPFSD +FDAITMGYGLRNVVDKRKA++E
Sbjct: 119 KEQLMVASSRS--FSTNCFNNIEWVEGDALDLPFSDAWFDAITMGYGLRNVVDKRKAMQE 176
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
RVLKPGS S+LDFNKS + T++ EWMIDN+VVPVAS YGL+++Y+YLKSSIREFL
Sbjct: 177 ILRVLKPGSTASILDFNKSNELLTSSFTEWMIDNIVVPVASVYGLSDDYKYLKSSIREFL 236
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVA 220
TGK+LEKLALE+GFS A+HYE+ GGLMG LVA
Sbjct: 237 TGKELEKLALEVGFSTARHYEIGGGLMGCLVA 268
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 222 | ||||||
| TAIR|locus:2028050 | 261 | MENG [Arabidopsis thaliana (ta | 0.959 | 0.816 | 0.723 | 2.2e-82 | |
| UNIPROTKB|P0A887 | 251 | ubiE "bifunctional 2-octapreny | 0.914 | 0.808 | 0.394 | 7.4e-34 | |
| TIGR_CMR|CPS_0294 | 271 | CPS_0294 "ubiquinone/menaquino | 0.918 | 0.752 | 0.381 | 3.2e-33 | |
| UNIPROTKB|Q3AB55 | 244 | menG "Demethylmenaquinone meth | 0.945 | 0.860 | 0.376 | 2.9e-32 | |
| TIGR_CMR|CHY_1809 | 244 | CHY_1809 "2-heptaprenyl-1,4-na | 0.945 | 0.860 | 0.376 | 2.9e-32 | |
| UNIPROTKB|Q9KVQ6 | 260 | ubiE "Ubiquinone/menaquinone b | 0.909 | 0.776 | 0.377 | 4.7e-32 | |
| TIGR_CMR|VC_0083 | 260 | VC_0083 "ubiquinone/menaquinon | 0.909 | 0.776 | 0.377 | 4.7e-32 | |
| TIGR_CMR|SO_4199 | 251 | SO_4199 "ubiquinone/menaquinon | 0.909 | 0.804 | 0.354 | 2.7e-29 | |
| TIGR_CMR|CBU_2017 | 250 | CBU_2017 "ubiquinone/menaquino | 0.918 | 0.816 | 0.342 | 7.1e-29 | |
| ZFIN|ZDB-GENE-040912-5 | 327 | zgc:92445 "zgc:92445" [Danio r | 0.725 | 0.492 | 0.335 | 1.2e-28 |
| TAIR|locus:2028050 MENG [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 154/213 (72%), Positives = 183/213 (85%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
LNDLLS GQHRIWK MAVSWSGAK GD VLD+CCGSGDL+FLLSE+VGS GKV+GLDFS
Sbjct: 49 LNDLLSLGQHRIWKNMAVSWSGAKKGDYVLDLCCGSGDLAFLLSEKVGSTGKVMGLDFSS 108
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
QL++A++RQ L +++CYK IEW+EGDA+DLPF DC FDA+TMGYGLRNVVD+ +A++E
Sbjct: 109 EQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEM 168
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLT 189
+RVLKPGSR+S+LDFNKS Q TT +Q WMIDNVVVPVA+ Y LA+EY+YLK SI +LT
Sbjct: 169 YRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLT 228
Query: 190 GKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
G++LE LALE GFS A HYE+SGG MGNLVA R
Sbjct: 229 GEELETLALEAGFSSACHYEISGGFMGNLVAMR 261
|
|
| UNIPROTKB|P0A887 ubiE "bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 82/208 (39%), Positives = 121/208 (58%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
+NDL+SFG HR+WKR + SG + G VLD+ G+GDL+ S VG GKV+ D ++
Sbjct: 39 MNDLMSFGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINE 98
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
+ L M R+ L + N+E+V+ +A LPF D FD IT+ +GLRNV DK KAL
Sbjct: 99 SMLKMG--REKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTDKDKALRSM 156
Query: 130 FRVLKPGSRISVLDFNKST-QPFTTAIQEWMIDNVVVPVASGYGL-AEEYQYLKSSIREF 187
+RVLKPG R+ VL+F+K +P + A + +V+ + S A+ Y+YL SIR
Sbjct: 157 YRVLKPGGRLLVLEFSKPIIEPLSKAYDAYSF-HVLPRIGSLVANDADSYRYLAESIRMH 215
Query: 188 LTGKDLEKLALEIGFSRAKHYELSGGLM 215
L+ + + GF +Y L+ G++
Sbjct: 216 PDQDTLKAMMQDAGFESVDYYNLTAGVV 243
|
|
| TIGR_CMR|CPS_0294 CPS_0294 "ubiquinone/menaquinone biosynthesis methlytransferase UbiE" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 79/207 (38%), Positives = 119/207 (57%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
+NDL+SFG HR+WKR + SG + G+ VLD+ G+GDL+ S+ VG +GKVI D +
Sbjct: 59 MNDLMSFGIHRLWKRFTIDASGVRPGNKVLDLAGGTGDLTAKFSKLVGREGKVILADINS 118
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
+ L++ R L K +NIE+V+ +A LPF + FD +T+ +GLRNV DK KAL
Sbjct: 119 SMLNVG--RDKLRDKGLVQNIEYVQANAEYLPFEENTFDIVTIAFGLRNVTDKDKALRSI 176
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL-AEEYQYLKSSIREFL 188
+ VLKPG R+ VL+F+K ++ N++ + E YQYL SIR
Sbjct: 177 YSVLKPGGRLLVLEFSKPEHELLNKAYDFYSFNILPKMGELVAKDGESYQYLAESIRMHP 236
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLM 215
+ L+ + + GF + L+GG++
Sbjct: 237 DQETLKDMMEKAGFEQTSFKNLTGGVV 263
|
|
| UNIPROTKB|Q3AB55 menG "Demethylmenaquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 81/215 (37%), Positives = 122/215 (56%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
LN +LSF + + W+R AV SG G LDV CG+G + L+ VG G+V+GLDF++
Sbjct: 27 LNTVLSFNRDKAWRRFAVKVSGLSAGGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNE 86
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
N L +A R+++ + K I+ V G+AL LPF D FD T+G+ LRNV D K + E
Sbjct: 87 NMLEVA--RKNIARYSMEKIIKLVHGNALALPFPDNSFDVATIGFALRNVPDIEKTILEM 144
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS--GYGLAEEYQYLKSSIREF 187
RV+KPG R+ L+ T P + W +VP+ G G+ Y YL +S++ F
Sbjct: 145 KRVVKPGGRVVNLELAHPTFPVFKQLY-WFYFEKLVPLLGKLGVGVDGPYSYLPNSVKNF 203
Query: 188 LTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
+ ++K+ ++G K YEL+GG++ V T+
Sbjct: 204 PHQQVIKKMFEDLGLVDVKCYELTGGIVAVHVGTK 238
|
|
| TIGR_CMR|CHY_1809 CHY_1809 "2-heptaprenyl-1,4-naphthoquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 81/215 (37%), Positives = 122/215 (56%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
LN +LSF + + W+R AV SG G LDV CG+G + L+ VG G+V+GLDF++
Sbjct: 27 LNTVLSFNRDKAWRRFAVKVSGLSAGGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNE 86
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
N L +A R+++ + K I+ V G+AL LPF D FD T+G+ LRNV D K + E
Sbjct: 87 NMLEVA--RKNIARYSMEKIIKLVHGNALALPFPDNSFDVATIGFALRNVPDIEKTILEM 144
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS--GYGLAEEYQYLKSSIREF 187
RV+KPG R+ L+ T P + W +VP+ G G+ Y YL +S++ F
Sbjct: 145 KRVVKPGGRVVNLELAHPTFPVFKQLY-WFYFEKLVPLLGKLGVGVDGPYSYLPNSVKNF 203
Query: 188 LTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
+ ++K+ ++G K YEL+GG++ V T+
Sbjct: 204 PHQQVIKKMFEDLGLVDVKCYELTGGIVAVHVGTK 238
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| UNIPROTKB|Q9KVQ6 ubiE "Ubiquinone/menaquinone biosynthesis methyltransferase ubiE" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 79/209 (37%), Positives = 119/209 (56%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
+NDL+S G HR+WKR + SGA+ G +LD+ G+GDL+ S VG +G VI D +
Sbjct: 48 MNDLMSGGIHRLWKRFTIDCSGARPGQRILDLGGGTGDLTAKFSRIVGEKGHVILADINN 107
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
+ L++ R L N+ +V+ +A +LPF D +FD IT+ + LRNV DK KAL
Sbjct: 108 SMLNVG--RDKLRDSGVVGNVHYVQANAEELPFPDNYFDCITISFCLRNVTDKDKALRSM 165
Query: 130 FRVLKPGSRISVLDFNKST-QPFTTAIQEWMIDNVVVPVASGY--GLAEEYQYLKSSIRE 186
FRVLKPG R+ VL+F+K +P + + ++P A+ Y+YL SIR
Sbjct: 166 FRVLKPGGRLLVLEFSKPILEPLSKLYDTYSFH--ILPKMGQLIANDADSYRYLAESIRM 223
Query: 187 FLTGKDLEKLALEIGFSRAKHYELSGGLM 215
+ L+ + E GF + +Y L+GG++
Sbjct: 224 HPDQETLKGMMEEAGFEQTTYYNLTGGIV 252
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| TIGR_CMR|VC_0083 VC_0083 "ubiquinone/menaquinone biosynthesis methlytransferase UbiE" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 79/209 (37%), Positives = 119/209 (56%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
+NDL+S G HR+WKR + SGA+ G +LD+ G+GDL+ S VG +G VI D +
Sbjct: 48 MNDLMSGGIHRLWKRFTIDCSGARPGQRILDLGGGTGDLTAKFSRIVGEKGHVILADINN 107
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
+ L++ R L N+ +V+ +A +LPF D +FD IT+ + LRNV DK KAL
Sbjct: 108 SMLNVG--RDKLRDSGVVGNVHYVQANAEELPFPDNYFDCITISFCLRNVTDKDKALRSM 165
Query: 130 FRVLKPGSRISVLDFNKST-QPFTTAIQEWMIDNVVVPVASGY--GLAEEYQYLKSSIRE 186
FRVLKPG R+ VL+F+K +P + + ++P A+ Y+YL SIR
Sbjct: 166 FRVLKPGGRLLVLEFSKPILEPLSKLYDTYSFH--ILPKMGQLIANDADSYRYLAESIRM 223
Query: 187 FLTGKDLEKLALEIGFSRAKHYELSGGLM 215
+ L+ + E GF + +Y L+GG++
Sbjct: 224 HPDQETLKGMMEEAGFEQTTYYNLTGGIV 252
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| TIGR_CMR|SO_4199 SO_4199 "ubiquinone/menaquinone biosynthesis methlytransferase UbiE" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 74/209 (35%), Positives = 117/209 (55%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
+ND++SFG HR WKR + SGA+ G VLD+ G+GDL+ S VG +G+V+ D +
Sbjct: 39 MNDVMSFGIHRFWKRYTIEVSGARPGMKVLDLAGGTGDLTAKFSHLVGDKGEVVLADIND 98
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
+ L + R L + N+ +V+ +A LPF D FD IT+ +GLRNV DK AL
Sbjct: 99 SMLKVG--RTKLRDRGIVSNVSYVQANAEALPFPDNHFDIITIAFGLRNVTDKDAALRSM 156
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL---AEEYQYLKSSIRE 186
RVLKPG ++ VL+F+K + + + V+P G + A+ Y+YL SIR
Sbjct: 157 NRVLKPGGKLLVLEFSKPQHEVMRKVYD-LYSFKVLP-KMGQLITKDADSYEYLAESIRM 214
Query: 187 FLTGKDLEKLALEIGFSRAKHYELSGGLM 215
L+++ ++ GF + + ++ G++
Sbjct: 215 HPDQDTLKQMMVDAGFEQVDYTNMTDGIV 243
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| TIGR_CMR|CBU_2017 CBU_2017 "ubiquinone/menaquinone biosynthesis methlytransferase UbiE" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 71/207 (34%), Positives = 119/207 (57%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
+NDL+S G HR WK A++ +TG +LD+ G+GDL+ +S VG +G+V+ D +
Sbjct: 38 MNDLMSLGIHRWWKDFAITQCRLRTGQRILDLAGGTGDLAKRISPLVGDEGEVVIADINA 97
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
L++ R+ L+ + ++NI++++ DA LPF + FFD I +G+GLRNV ++ AL+
Sbjct: 98 AMLNVG--RRRLLDQGIFRNIQFIQADAEKLPFPNNFFDRIVIGFGLRNVTNQLAALQSM 155
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEE-YQYLKSSIREFL 188
RV+KPG + +L+F+K T A+ + ++ + EE Y+YL SIR
Sbjct: 156 HRVIKPGGFVVILEFSKPTLAPLKAVYDAYSFQLLPRLGKLVAKDEESYRYLVESIRMHP 215
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLM 215
+ L + GF ++ LSGG++
Sbjct: 216 DQEALLSKMTDAGFEDCDYHNLSGGIV 242
|
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| ZFIN|ZDB-GENE-040912-5 zgc:92445 "zgc:92445" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 56/167 (33%), Positives = 91/167 (54%)
Query: 52 LSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110
+S++ G Q + + D +K L + R + + WV GDA +LPF D FD
Sbjct: 156 VSDEEGPPQSRAVVCDINKEMLKVGKQRAE--DAGITTGLSWVAGDAEELPFDDDQFDMY 213
Query: 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASG 170
T+ +G+RNV +AL+E+FRVLKPG R L+F+K T P + + ++PV
Sbjct: 214 TIAFGIRNVTHIEQALQEAFRVLKPGGRFMCLEFSKVTNPLLARLYD-AYSFQMIPVLGE 272
Query: 171 Y--GLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 215
G + YQYL SIR+F + +++ + GF R +++ L+GG++
Sbjct: 273 VIAGDWKSYQYLVESIRKFPDQEIFKEMIEDAGFFRVQYFNLTGGIV 319
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q14GU4 | UBIE_FRAT1 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4038 | 0.9234 | 0.82 | yes | no |
| O66128 | UBIE_MICLU | 2, ., 1, ., 1, ., 1, 6, 3 | 0.3864 | 0.9054 | 0.8170 | yes | no |
| Q8DGE4 | UBIE_THEEB | 2, ., 1, ., 1, ., 1, 6, 3 | 0.4906 | 0.9414 | 0.9288 | yes | no |
| Q5X0X6 | UBIE_LEGPA | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3767 | 0.9549 | 0.848 | yes | no |
| A9MY97 | UBIE_SALPB | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| A1JIF2 | UBIE_YERE8 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| Q66FT0 | UBIE_YERPS | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4075 | 0.9099 | 0.8047 | yes | no |
| B1JP75 | UBIE_YERPY | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4075 | 0.9099 | 0.8047 | yes | no |
| B5BIX9 | UBIE_SALPK | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| Q1CBG0 | UBIE_YERPA | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4123 | 0.9099 | 0.8047 | yes | no |
| Q5N4X9 | UBIE_SYNP6 | 2, ., 1, ., 1, ., 1, 6, 3 | 0.5333 | 0.9369 | 0.8927 | yes | no |
| A8G8B8 | UBIE_SERP5 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3952 | 0.9144 | 0.8087 | yes | no |
| B4TBR3 | UBIE_SALHS | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| B0TZP1 | UBIE_FRAP2 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3942 | 0.9234 | 0.82 | yes | no |
| B2K0Y4 | UBIE_YERPB | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4075 | 0.9099 | 0.8047 | yes | no |
| A7MQL7 | UBIE_CROS8 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3981 | 0.9099 | 0.8047 | yes | no |
| A0Q549 | UBIE_FRATN | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4038 | 0.9234 | 0.82 | yes | no |
| Q1CNB4 | UBIE_YERPN | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4075 | 0.9099 | 0.8047 | yes | no |
| A4IXH9 | UBIE_FRATW | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4038 | 0.9234 | 0.82 | yes | no |
| Q0BNE2 | UBIE_FRATO | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3990 | 0.9234 | 0.82 | yes | no |
| A9R431 | UBIE_YERPG | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4075 | 0.9099 | 0.8047 | yes | no |
| Q5WSQ8 | UBIE_LEGPL | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3813 | 0.9549 | 0.848 | yes | no |
| Q2A524 | UBIE_FRATH | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3990 | 0.9234 | 0.82 | yes | no |
| B2SFA2 | UBIE_FRATM | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4038 | 0.9234 | 0.82 | yes | no |
| Q3ED65 | MENG_ARATH | 2, ., 1, ., 1, ., n, 1, 2 | 0.7196 | 0.9639 | 0.8199 | yes | no |
| B5FNW6 | UBIE_SALDC | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| P0A2K5 | UBIE_SALTY | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| P72818 | UBIE_SYNY3 | 2, ., 1, ., 1, ., 1, 6, 3 | 0.5117 | 0.9504 | 0.8865 | N/A | no |
| Q5ZRH9 | UBIE_LEGPH | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3767 | 0.9549 | 0.848 | yes | no |
| B4TNX9 | UBIE_SALSV | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| C0Q3E1 | UBIE_SALPC | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| B5EZU8 | UBIE_SALA4 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| P49016 | UBIE_LACLA | 2, ., 1, ., 1, ., 1, 6, 3 | 0.3906 | 0.9504 | 0.8373 | yes | no |
| Q8YLP4 | UBIE_NOSS1 | 2, ., 1, ., 1, ., 1, 6, 3 | 0.4953 | 0.9549 | 0.9257 | yes | no |
| Q3MD91 | UBIE_ANAVT | 2, ., 1, ., 1, ., 1, 6, 3 | 0.4907 | 0.9459 | 0.9170 | yes | no |
| Q8D1I3 | UBIE_YERPE | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4075 | 0.9099 | 0.8047 | yes | no |
| Q57HN8 | UBIE_SALCH | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| A5II90 | UBIE_LEGPC | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3813 | 0.9549 | 0.848 | yes | no |
| B5RFM8 | UBIE_SALG2 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| Q5PKP4 | UBIE_SALPA | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| A7NAA1 | UBIE_FRATF | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3990 | 0.9234 | 0.82 | yes | no |
| B5QW73 | UBIE_SALEP | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| Q31P90 | UBIE_SYNE7 | 2, ., 1, ., 1, ., 1, 6, 3 | 0.5333 | 0.9369 | 0.8927 | yes | no |
| B2IUM7 | UBIE_NOSP7 | 2, ., 1, ., 1, ., 1, 6, 3 | 0.5046 | 0.9459 | 0.9130 | yes | no |
| A7FDE0 | UBIE_YERP3 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4075 | 0.9099 | 0.8047 | yes | no |
| B4SZ73 | UBIE_SALNS | 2, ., 1, ., 1, ., 2, 0, 1 | 0.3933 | 0.9099 | 0.8047 | yes | no |
| Q5NFE1 | UBIE_FRATT | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4038 | 0.9234 | 0.82 | yes | no |
| A4TR39 | UBIE_YERPP | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4075 | 0.9099 | 0.8047 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00002760001 | SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (258 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00001873001 | SubName- Full=Chromosome undetermined scaffold_123, whole genome shotgun sequence; (540 aa) | • | • | • | 0.933 | |||||
 | GSVIVG00006156001 | SubName- Full=Chromosome undetermined scaffold_165, whole genome shotgun sequence; (363 aa) | • | • | • | 0.918 | |||||
 | GSVIVG00002734001 | SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (336 aa) | • | 0.595 | |||||||
 | GSVIVG00036740001 | SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (456 aa) | • | 0.585 | |||||||
 | GSVIVG00021178001 | SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (587 aa) | • | • | 0.560 | ||||||
 | GSVIVG00027948001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (420 aa) | • | • | • | 0.549 | |||||
 | GSVIVG00025072001 | SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_32, whole genome shotg [...] (166 aa) | • | 0.465 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 222 | |||
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 1e-146 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 1e-96 | |
| PLN02232 | 160 | PLN02232, PLN02232, ubiquinone biosynthesis methyl | 8e-80 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 2e-76 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 6e-75 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 5e-61 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 4e-45 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-24 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 8e-24 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-21 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 2e-20 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-16 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-12 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 4e-12 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 7e-12 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 3e-11 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 1e-09 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 1e-09 | |
| TIGR01177 | 329 | TIGR01177, TIGR01177, TIGR01177 family protein | 3e-08 | |
| COG1041 | 347 | COG1041, COG1041, Predicted DNA modification methy | 6e-08 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 7e-08 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 2e-07 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 4e-07 | |
| PRK05785 | 226 | PRK05785, PRK05785, hypothetical protein; Provisio | 5e-07 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 1e-06 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 5e-06 | |
| PRK06922 | 677 | PRK06922, PRK06922, hypothetical protein; Provisio | 8e-06 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 1e-05 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 1e-05 | |
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 2e-05 | |
| PRK00377 | 198 | PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr | 3e-05 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 3e-05 | |
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 4e-05 | |
| PRK11088 | 272 | PRK11088, rrmA, 23S rRNA methyltransferase A; Prov | 9e-05 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 1e-04 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 1e-04 | |
| pfam07021 | 193 | pfam07021, MetW, Methionine biosynthesis protein M | 1e-04 | |
| COG4798 | 238 | COG4798, COG4798, Predicted methyltransferase [Gen | 2e-04 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 5e-04 | |
| COG1063 | 350 | COG1063, Tdh, Threonine dehydrogenase and related | 0.001 | |
| TIGR02081 | 194 | TIGR02081, metW, methionine biosynthesis protein M | 0.003 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 0.004 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 408 bits (1050), Expect = e-146
Identities = 172/213 (80%), Positives = 199/213 (93%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
LNDLLS GQHRIWKRMAVSWSGAK GD VLD+CCGSGDL+FLLSE+VGS GKV+GLDFS
Sbjct: 49 LNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS 108
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129
QL++A+SRQ+L +K+CYKNIEW+EGDA DLPF DC+FDAITMGYGLRNVVD+ KA++E
Sbjct: 109 EQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEM 168
Query: 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLT 189
+RVLKPGSR+S+LDFNKSTQPFTT++QEWMIDNVVVPVA+GYGLA+EY+YLKSSI E+LT
Sbjct: 169 YRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLT 228
Query: 190 GKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
G++LEKLALE GFS AKHYE+SGGLMGNLVATR
Sbjct: 229 GEELEKLALEAGFSSAKHYEISGGLMGNLVATR 261
|
Length = 261 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 280 bits (720), Expect = 1e-96
Identities = 91/215 (42%), Positives = 132/215 (61%), Gaps = 3/215 (1%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
+NDLLSFG HR+W+R + W G + GD VLD+ CG+GDL+ L++ VG G+V+GLDFS
Sbjct: 26 LMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFS 85
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
+ L++ R+ L N+E+V+GDA LPF D FDA+T+ +GLRNV D KAL E
Sbjct: 86 EGMLAVG--REKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALRE 143
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL-AEEYQYLKSSIREF 187
+RVLKPG R+ +L+F+K T P ++ + V+ + AE Y YL SIR F
Sbjct: 144 MYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAF 203
Query: 188 LTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
++L + E GF R ++ L+GG++ V +
Sbjct: 204 PDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238
|
Length = 239 |
| >gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 8e-80
Identities = 109/160 (68%), Positives = 135/160 (84%)
Query: 63 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK 122
+GLDFS QL++A++RQ L +++CYK IEW+EGDA+DLPF DC FDA+TMGYGLRNVVD+
Sbjct: 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR 60
Query: 123 RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182
+A++E +RVLKPGSR+S+LDFNKS Q TT +Q WMIDNVVVPVA+ Y LA+EY+YLK
Sbjct: 61 LRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKY 120
Query: 183 SIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
SI +LTG++LE LALE GFS A HYE+SGG MGNLVA R
Sbjct: 121 SINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAMR 160
|
Length = 160 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 2e-76
Identities = 87/215 (40%), Positives = 124/215 (57%), Gaps = 6/215 (2%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
LNDLLSFG HR+W+R AV G G VLDV CG+GDL+ L++ +GKV G+DFS
Sbjct: 14 LLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS 73
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
L +A + +L NIE+++ DA LPF D FDA+T+ +GLRNV D +KAL E
Sbjct: 74 SEMLEVAKKKSELPL-----NIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALRE 128
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY-GLAEEYQYLKSSIREF 187
+RVLKPG R+ +L+F+K ++ + NV+ + AE Y YL SIR F
Sbjct: 129 MYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAF 188
Query: 188 LTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222
+ ++L + E GF ++ L+ G+ V +
Sbjct: 189 PSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 225 bits (577), Expect = 6e-75
Identities = 88/215 (40%), Positives = 133/215 (61%), Gaps = 8/215 (3%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
+NDL+SFG HR+W+R +S G K GD VLDV CG+GD++ LL++ VG G+V+GLD S
Sbjct: 26 LMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDIS 84
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
++ L +A ++ + K +N+E+V GDA +LPF D FDA+T+ +GLRNV D KAL+E
Sbjct: 85 ESMLEVA---REKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKE 141
Query: 129 SFRVLKPGSRISVLDFNK-STQPFTTAIQEWMIDNVVVPVASGY--GLAEEYQYLKSSIR 185
+RVLKPG R+ VL+F+K A + V+P+ AE Y+YL SIR
Sbjct: 142 MYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYF-KYVLPLIGKLVAKDAEAYEYLAESIR 200
Query: 186 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVA 220
F ++L+++ + GF ++ L+ G++
Sbjct: 201 RFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRG 235
|
Length = 238 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 5e-61
Identities = 83/210 (39%), Positives = 122/210 (58%), Gaps = 10/210 (4%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
+ND++SFG HR+WK + G K G+ LDV G+GD +F LS+ GS GKV+GLD +
Sbjct: 22 LMNDVISFGIHRLWKDFTMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDIN 81
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
+N L + + NIE+++G+A +LPF D FD +T+ +GLRN D K L+E
Sbjct: 82 ENMLKEGEKK---AKEEGKYNIEFLQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKE 138
Query: 129 SFRVLKPGSRISVLDFNKSTQP-FTTAIQEWMIDNVVVPVASGYGLA---EEYQYLKSSI 184
+FRVLKPG R+ L+F+K P + A + + V+P G A + YQYL+ SI
Sbjct: 139 AFRVLKPGGRVVCLEFSKPENPLLSQAYELYFKY--VMPFM-GKMFAKSYKSYQYLQESI 195
Query: 185 REFLTGKDLEKLALEIGFSRAKHYELSGGL 214
R+F K L + + GF + L+GG+
Sbjct: 196 RDFPDQKTLASMFEKAGFKSVGYESLTGGI 225
|
Length = 233 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 4e-45
Identities = 76/211 (36%), Positives = 121/211 (57%), Gaps = 14/211 (6%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
++N ++SF +H+ W++ + + G + LDVCCG+ D S L+E VG +G VIGLDFS
Sbjct: 20 RMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFS 79
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
+N LS+ + V A N+E V G+A++LPF D FD +T+G+GLRNV D + L E
Sbjct: 80 ENMLSVGRQK---VKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLRE 136
Query: 129 SFRVLKPGSRISVLDFNKSTQP-FTTAIQEWMIDNVVVPV-----ASGYGLAEEYQYLKS 182
+RV+KPG ++ L+ ++ T P F + ++P+ A Y +EY +L+
Sbjct: 137 MYRVVKPGGKVVCLETSQPTIPGFKQLY--FFYFKYIMPLFGKLFAKSY---KEYSWLQE 191
Query: 183 SIREFLTGKDLEKLALEIGFSRAKHYELSGG 213
S R+F +L ++ E GF + +GG
Sbjct: 192 STRDFPGMDELAEMFQEAGFKDVEVKSYTGG 222
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 2e-24
Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
K+G VLD+ CG+G L+F+L+E++G +V+G+D S+ + A ++ K Y+N+E+
Sbjct: 2 KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKA---KENAKKLGYENVEF 58
Query: 93 VEGDALDLP---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145
++GD +LP D FD + L ++ D K LEE RVLKPG + V D
Sbjct: 59 IQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPV 114
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 8e-24
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 8/127 (6%)
Query: 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR- 78
R ++ + GD VLDV CG G+ + L+ +VG +G+V+G+D S+ L++A R
Sbjct: 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERA 64
Query: 79 -QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGS 137
N+E+V GDA LPF D FDA+ L+++ D +AL E RVL+PG
Sbjct: 65 AGLGP------NVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG 118
Query: 138 RISVLDF 144
R+ VLD
Sbjct: 119 RVVVLDT 125
|
Length = 241 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 1e-21
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 39 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98
LDV CG+G L+ L+ + G++ V G+D S L++A R ++V GDA
Sbjct: 1 LDVGCGTGLLAEALARRGGAR--VTGVDLSPEMLALARKR---------APRKFVVGDAE 49
Query: 99 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139
DLPF D FD + L ++ D +AL E RVLKPG ++
Sbjct: 50 DLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKL 90
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 2e-20
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 13/116 (11%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
K G+ VLD+ G G FL + +VG GKVIG+D + L+ A + KA Y N+E+
Sbjct: 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR---KAGYTNVEF 132
Query: 93 VEGDALDLPFSDCFFDAITMGYGLRNVV-----DKRKALEESFRVLKPGSRISVLD 143
G+ LP +D D I + N V DK + +E+FRVLKPG R ++ D
Sbjct: 133 RLGEIEALPVADNSVDVI-----ISNCVINLSPDKERVFKEAFRVLKPGGRFAISD 183
|
Length = 272 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-16
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94
G VLD+ CG+G L+ L+ +V G+D S L +A ++ A I +V+
Sbjct: 2 GARVLDIGCGTGSLAIELARLFP-GARVTGVDLSPEMLELA---RENAKLALGPRITFVQ 57
Query: 95 GDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139
GDA D FDA+ +G G ++++ L+ +LKPG R+
Sbjct: 58 GDAPDALDLLEGFDAVFIGGGGGDLLE---LLDALASLLKPGGRL 99
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-12
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97
+LD+ CG+G + L+ S V G+D SK L +A R + + +V DA
Sbjct: 1 ILDLGCGTGRVLRALARAGPSS--VTGVDISKEALELAKERL----RDKGPKVRFVVADA 54
Query: 98 LDLPFSDCFFDAIT---MGYGLRNVVDKRKALEESFRVLKPG 136
DLPF + FD + + + R L E+ R+L+PG
Sbjct: 55 RDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPG 96
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 4e-12
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 39 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98
LD+ CG+G L L E + G+D S L A+ R + + DA+
Sbjct: 1 LDIGCGTGTLLRALLEA-LPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAI 59
Query: 99 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139
DL FD + L ++ D R L R+LKPG +
Sbjct: 60 DLDPGS--FDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 7e-12
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 96
VLD+ CG+G L+ L+ G +V G+D S L +A + + N+E ++GD
Sbjct: 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELA---RKAAAALLADNVEVLKGD 55
Query: 97 ALDLPFSDC-FFDAITMGYGLRNVV-DKRKALEESFRVLKPGSRI 139
A +LP FD I L ++V D + LEE+ R+LKPG +
Sbjct: 56 AEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVL 100
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-11
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 12/117 (10%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94
GD VLD GSG + G +V+G++ ++A R+ L + V
Sbjct: 1 GDRVLDPGAGSGAFLLAAARA-GPDARVVGVELDPEAAALA--RRRLALAGLAPRVRVVV 57
Query: 95 GDALDLP-FSDCFFDAITMG--YGLRNVVDKRK------ALEESFRVLKPGSRISVL 142
GDA +L D FD + YG R K L + R+LKPG + V+
Sbjct: 58 GDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVI 114
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-09
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97
VLD+ CG+G L+ L ++ Q + I D S L+ A + +S +N++++ GDA
Sbjct: 38 VLDIGCGTGYLTRALLKR-FPQAEFIANDISAGMLAQA---KTKLS----ENVQFICGDA 89
Query: 98 LDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG 136
LP D FD I L+ D +AL E RVLKPG
Sbjct: 90 EKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPG 128
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 56.1 bits (132), Expect = 1e-09
Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 9/189 (4%)
Query: 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97
VLD+ CG+G L+ L G V+G+D S L++A +R A +++V DA
Sbjct: 52 VLDIGCGTGRLALLA-RLGGRGAYVVGVDLSPEMLALARAR---AEGAGLGLVDFVVADA 107
Query: 98 LD--LPFSDCF-FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK-STQPFTT 153
L LPF D FD + L +++ KAL E RVLKPG R+ + D +
Sbjct: 108 LGGVLPFEDSASFDLVISLLVL-HLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRL 166
Query: 154 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGG 213
A D V+ L + + E L +L + L
Sbjct: 167 AALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELELERGGLARLLEELRLLLE 226
Query: 214 LMGNLVATR 222
L+ + R
Sbjct: 227 LLALGLEAR 235
|
Length = 257 |
| >gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 38/129 (29%), Positives = 50/129 (38%), Gaps = 17/129 (13%)
Query: 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLV 82
R V+ + GD VLD CG+G FL+ + G G KVIG D M + + +
Sbjct: 172 RAMVNLARVTEGDRVLDPFCGTG--GFLI--EAGLMGAKVIGCDI---DWKMVAGARINL 224
Query: 83 SKACYKNIEWVEGDALDLPFSDCFFDAIT--MGYGL-------RNVVDKRKALEESFRVL 133
++ GDA LP S DAI YG ++LEE VL
Sbjct: 225 EHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVL 284
Query: 134 KPGSRISVL 142
K I
Sbjct: 285 KSEGWIVYA 293
|
This family is found exclusively in the Archaea [Hypothetical proteins, Conserved]. Length = 329 |
| >gnl|CDD|223971 COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-08
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASS--RQD 80
R V+ + K G+ VLD CG+G L+ + G G +VIG D + + A
Sbjct: 187 RAMVNLARVKRGELVLDPFCGTG--GILI--EAGLMGARVIGSDIDERMVRGAKINLEYY 242
Query: 81 LVSKACYKNIEWVEGDALDLPFSDCFFDAIT--MGYG-----LRNVVDK--RKALEESFR 131
+ + DA +LP D DAI YG +D+ +ALE +
Sbjct: 243 GIEDYPVLKV----LDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASE 298
Query: 132 VLKPGSRISV 141
VLKPG RI
Sbjct: 299 VLKPGGRIVF 308
|
Length = 347 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 7e-08
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA---SSRQDLV 82
V K ++DV CG G S L+ + G+ K I L S Q + A ++ Q L
Sbjct: 110 GVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITL--SPVQAARANALAAAQGLS 167
Query: 83 SKACYKNIEWVEGDALDLPFSDCFFDAI-TMGYGLRNVVDKRKALEESFRVLKPGSRI 139
K ++ DAL+ PF D FD + +M G ++ DKRK ++E RV PG RI
Sbjct: 168 DKVSFQ-----VADALNQPFEDGQFDLVWSMESG-EHMPDKRKFVQELARVAAPGGRI 219
|
Length = 340 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
K G VLDV CG G F ++E V+G+D S N +S A R + + C ++E+
Sbjct: 265 KPGQKVLDVGCGIGGGDFYMAENFDVH--VVGIDLSVNMISFALERA--IGRKC--SVEF 318
Query: 93 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 150
D + D FD I + ++ DK F+ LKPG ++ + D+ +S
Sbjct: 319 EVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGT 376
|
Length = 475 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-07
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS-RQDLVSKACYKNIE 91
+ GD + D+ G+G ++ + V + G+V ++ + L + + NI
Sbjct: 18 RPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPEALDLIERNLRRFG----VSNIV 72
Query: 92 WVEGDALDLPFSDCF-FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144
VEGDA + P DA+ +G + + LE R L+PG RI VL+
Sbjct: 73 IVEGDAPEAPEDLLPDPDAVFVGGSGGLLQE---ILEAVERRLRPGGRI-VLNA 122
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-07
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 15/124 (12%)
Query: 11 NDLLSFGQHRIWKRMAVSWSGAKTGD--NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
N +SF Q W+ V G VLDV G G+LS+ + + V+ LD++
Sbjct: 26 NRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYA 83
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
+N L M D V + LPF D FD + + L + K + E
Sbjct: 84 ENMLKMNLVADDKVVGSFEA-----------LPFRDKSFDVVMSSFALHASDNIEKVIAE 132
Query: 129 SFRV 132
RV
Sbjct: 133 FTRV 136
|
Length = 226 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-06
Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 39/170 (22%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
K G VLD+ CG+G L LL E+ G V G+D S + + S
Sbjct: 21 KPGGRVLDIGCGTGILLRLLRER-GFD--VTGVDPSPAAVLIFSLF-------------- 63
Query: 93 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT 152
DA D +D IT L ++ D L++ +LKPG +
Sbjct: 64 ---DAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVL------------- 107
Query: 153 TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGF 202
I + D+ A+ + L ++ F + + L++L + GF
Sbjct: 108 -LISTPLADDDARLFANWHYLRPRNTHIS-----FYSEESLKRLLEKAGF 151
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-06
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
K G +LD+ CG G L+ +E+ G V+G+ S+ QL+ A + + ++ N+E
Sbjct: 71 KPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYA--EKRIAARGLEDNVE- 125
Query: 93 VEGDALDLPFSDCFFDAIT-MG----YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147
V D + FD I +G G N D ++ + +LKPG R+ +
Sbjct: 126 VR--LQDYRDFEEPFDRIVSVGMFEHVGKENYDD---FFKKVYALLKPGGRMLLHSITGP 180
Query: 148 TQPFTTAI 155
Q F
Sbjct: 181 DQEFRRFP 188
|
Length = 283 |
| >gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-06
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 24/127 (18%)
Query: 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW- 92
GD ++DV G G + ++ E+ ++ G+D S+N + ++ ++ W
Sbjct: 418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRS------WN 470
Query: 93 -VEGDALDLP--FSDCFFDAITMGYGLR-------------NVVDKRKALEESFRVLKPG 136
++GDA++L F D I L N +K L+ ++ VLKPG
Sbjct: 471 VIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG 530
Query: 137 SRISVLD 143
RI + D
Sbjct: 531 GRIIIRD 537
|
Length = 677 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 90
G G VL+ GSG L+ L+ VG +G V + ++ A R++L S+ +
Sbjct: 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTA--RENL-SEFGLGDR 147
Query: 91 EWVE-GDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141
++ GD + + DA+ + ++ D LE LKPG + V
Sbjct: 148 VTLKLGDVREGIDEED-VDAVFL-----DLPDPWNVLEHVSDALKPGGVVVV 193
|
Length = 256 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 38 VLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSR--QDLVSKACYKNIEWVE 94
VLDV CG G +LSE + G V G+D S+ + +A + V NI++ +
Sbjct: 63 VLDVGCGGG----ILSEPLARLGASVTGIDASEKPIEVAKLHALESGV------NIDYRQ 112
Query: 95 GDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTA 154
DL + FD +T L +V D L +++KPG + + N++ + + A
Sbjct: 113 ATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLA 172
Query: 155 I 155
I
Sbjct: 173 I 173
|
Length = 243 |
| >gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97
V+DV G+G + + + V ++ I LD S +QL+ A ++ L K + +EGDA
Sbjct: 117 VVDVGGGTGFTTLGIVKHVDAKNVTI-LDQSPHQLAKAKQKEPL------KECKIIEGDA 169
Query: 98 LDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSR 138
DLPF + D + D ++ ++E++RVLK G +
Sbjct: 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
|
Length = 340 |
| >gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-05
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 84
+A+S + GD +LD+ CG+G ++ S VG GKV +D K++ ++ +R++
Sbjct: 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVD--KDEKAINLTRRNAEKF 88
Query: 85 ACYKNIEWVEGDALD-LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143
NI ++G+A + L + FD I +G G + ++ + S+ ++K G RI V+D
Sbjct: 89 GVLNNIVLIKGEAPEILFTINEKFDRIFIGGGSEKL---KEIISASWEIIKKGGRI-VID 144
|
Length = 198 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-05
Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94
GD + D+ G+G ++ + G G+VI ++ +++ ++ ++ + N+E VE
Sbjct: 35 GDRLWDIGAGTGSITIEWA-LAGPSGRVIAIE--RDEEALELIERNAA-RFGVDNLEVVE 90
Query: 95 GDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN--KSTQPFT 152
GDA + DAI +G G N+ + LE ++ LKPG R+ V + ++
Sbjct: 91 GDAPEALPDLPSPDAIFIG-GGGNI---EEILEAAWERLKPGGRL-VANAITLETLAKAL 145
Query: 153 TAIQEWMIDNVV-VPVASGYGLAEEY 177
A+++ +V V ++ G L
Sbjct: 146 EALEQLGGREIVQVQISRGKPLGGGT 171
|
Length = 187 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-05
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 13/117 (11%)
Query: 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 84
M + K G VL++ GSG L+ + VG G V+ ++ +L + R + K
Sbjct: 64 MMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIP-ELVEIARRN--LEK 120
Query: 85 ACYKNIEWVEGDALD--LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139
+N+ V GD F+ +DAI +G + E LK G R+
Sbjct: 121 LGLENVIVVVGDGRQGWPEFAP--YDAIHVGAAAPEIP------EALIDQLKEGGRL 169
|
Length = 210 |
| >gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 9e-05
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 38 VLDVCCGSGDLSFLLSEQVGSQG--KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 95
+LD+ CG G + L++ + ++ GLD SK + A+ R Y + +
Sbjct: 89 LLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR--------YPQVTFCVA 140
Query: 96 DALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG 136
+ LPF+D DAI Y EE RV+KPG
Sbjct: 141 SSHRLPFADQSLDAIIRIYAPCKA-------EELARVVKPG 174
|
Length = 272 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 21/126 (16%)
Query: 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 90
+ +VLD CG G +S E+ GSQ V LD S L+ A + A
Sbjct: 39 PQRKFTHVLDAGCGPGWMSRYWRER-GSQ--VTALDLSPPMLAQARQKD-----AADH-- 88
Query: 91 EWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 150
++ GD LP + FD ++ + AL E +RV++PG ++
Sbjct: 89 -YLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVA---------- 137
Query: 151 FTTAIQ 156
FTT +Q
Sbjct: 138 FTTLVQ 143
|
Length = 251 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 34/135 (25%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN--QLSMASSRQDLVSKACYKNI 90
K GD VL+V GSG ++ + ++ KV+G+D + + + +++ + + +
Sbjct: 22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNN---GV 75
Query: 91 EWVEGDALDLPFSDCFFDAIT-----------------MGYGL------RNVVDKRKALE 127
E + D + PF FD I + Y L R V+D + L+
Sbjct: 76 EVIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVID--RFLD 132
Query: 128 ESFRVLKPGSRISVL 142
E R LKPG RI +L
Sbjct: 133 EVGRYLKPGGRILLL 147
|
Length = 188 |
| >gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
G VLD+ CG G L +LL E+ G+ I LD V++ K +
Sbjct: 12 PPGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELD------------AAGVAECVAKGLSV 59
Query: 93 VEGDA-LDLP-FSDCFFDAITMGYGLRNVVDKRKALEESFRV 132
++GDA L F D FD + + L+ + R+ L+E R+
Sbjct: 60 IQGDADKGLEHFPDKSFDYVILSQTLQATRNPREVLDELLRI 101
|
This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalyzed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalyzed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. Length = 193 |
| >gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 9/126 (7%)
Query: 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIG---LDFSKNQLSMASSRQDLVS 83
++++G K G V+D+ G G + + S VG +GKV + +K
Sbjct: 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAR 100
Query: 84 KACYKNIEWVEGD--ALDLPFS-DCFFDAIT-MGYGLRNV--VDKRKALEESFRVLKPGS 137
+ Y N+E + AL P D A +N+ K F+ LKPG
Sbjct: 101 EPVYANVEVIGKPLVALGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGG 160
Query: 138 RISVLD 143
V D
Sbjct: 161 VYLVED 166
|
Length = 238 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 5e-04
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 37 NVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASS---RQDLVSKACYKNIEW 92
VLD+ GSG ++ L E+ ++ V +D S L++A R L N+E+
Sbjct: 90 RVLDLGTGSGAIALALAKERPDAR--VTAVDISPEALAVARKNAARLGL------DNVEF 141
Query: 93 VEGDALDLPFSDCFFDAI 110
++ D + P FD I
Sbjct: 142 LQSDWFE-PLPGGKFDLI 158
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 19/136 (13%)
Query: 10 LNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69
L + L+ H +R AV + G V+ V G L + ++ VI +D S
Sbjct: 149 LTEPLATAYHGHAERAAV-----RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203
Query: 70 NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD---KRKAL 126
+L +A ++ + E G + +T G G V++ AL
Sbjct: 204 ERLELA--KEAGGADVVVNPSEDDAGAEIL---------ELTGGRGADVVIEAVGSPPAL 252
Query: 127 EESFRVLKPGSRISVL 142
+++ L+PG + V+
Sbjct: 253 DQALEALRPGGTVVVV 268
|
Length = 350 |
| >gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94
G VLD+ CG G+L LL ++ +G I +D QD V + + ++
Sbjct: 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEID------------QDGVLACVARGVNVIQ 61
Query: 95 GDA-LDLP-FSDCFFDAITMGYGLRNVVDKRKALEESFRV 132
GD L F D FD + + L+ + + L+E RV
Sbjct: 62 GDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRV 101
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized [Amino acid biosynthesis, Aspartate family]. Length = 194 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 93
G VLDV CG G LLSE + G V G+D S+ + +A K IE+
Sbjct: 46 GLRVLDVGCGGG----LLSEPLARLGANVTGIDASEENIEVAKLHAK---KDPLLKIEYR 98
Query: 94 EGDALDLPFSDC-FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT 152
DL FD +T L +V D + + ++LKPG + N++ + +
Sbjct: 99 CTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYL 158
Query: 153 TAIQEWMIDNV 163
AI + +
Sbjct: 159 LAI--VGAEYI 167
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 222 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 100.0 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 100.0 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 100.0 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 100.0 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 100.0 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.97 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.95 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.95 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.92 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.92 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.91 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.91 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.91 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.91 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.9 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.9 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.89 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.89 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.89 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.89 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.89 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.88 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.88 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.88 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.87 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.87 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.87 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.87 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.86 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.86 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.86 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.86 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.85 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.85 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.85 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.85 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.85 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.85 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.84 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.83 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.82 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.81 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.81 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.8 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.8 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.8 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.79 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.78 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.78 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.78 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.77 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.77 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.77 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.77 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.76 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.76 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.76 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.76 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.75 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.75 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.75 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.74 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.74 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.74 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.74 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.73 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.73 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.72 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.72 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.72 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.72 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.71 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.71 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.71 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.7 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.7 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.7 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.69 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.69 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.69 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.69 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.69 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.68 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.68 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.67 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.66 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.66 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.66 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.65 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.65 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.65 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.65 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.64 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.63 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.63 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.63 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.62 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.62 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.62 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.62 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.62 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.61 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.6 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.6 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.6 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.6 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.6 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.59 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.58 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.58 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.58 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.58 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.57 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.57 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.57 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.57 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.56 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.55 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.54 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.54 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.54 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.53 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.52 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.51 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.51 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.51 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.5 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.49 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.49 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.49 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.48 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.48 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.48 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.48 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.47 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.46 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.44 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.44 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.44 | |
| PLN02366 | 308 | spermidine synthase | 99.42 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.42 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.41 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.38 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.38 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.36 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.36 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.36 | |
| PLN02476 | 278 | O-methyltransferase | 99.34 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.33 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.33 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.32 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.32 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.32 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 99.31 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.31 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.3 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.29 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.28 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 99.27 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.27 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.26 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.25 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.24 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.24 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.23 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 99.22 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.22 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.21 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 99.19 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.18 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.18 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 99.16 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.16 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 99.15 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.15 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.15 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.13 | |
| PLN02823 | 336 | spermine synthase | 99.12 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 99.12 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.11 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.1 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.1 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.1 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.08 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 99.07 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.07 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 99.06 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.06 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 99.05 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 99.05 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.04 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 99.02 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 99.01 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.98 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.97 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.96 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.95 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.95 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.92 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.91 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.91 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.91 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.9 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.9 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.89 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.89 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.87 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.87 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.84 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.84 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.81 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.81 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.78 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.78 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.77 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.76 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.75 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 98.75 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.72 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.72 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.71 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.68 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.67 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.65 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.65 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.65 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.63 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.62 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.62 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.61 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.59 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.59 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.53 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.5 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.49 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.49 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.49 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.45 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.44 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.39 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.38 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.36 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.33 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.31 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.31 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.3 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.26 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.25 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 98.24 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 98.2 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.2 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.19 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 98.15 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.13 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 98.06 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.01 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.99 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.97 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.96 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.95 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.89 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.87 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.87 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.84 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.82 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.81 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.81 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.8 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 97.8 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.79 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.7 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 97.58 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.5 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.49 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.34 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.24 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 97.17 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 97.15 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.12 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.11 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 97.07 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.03 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 97.02 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.02 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 97.01 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.98 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.97 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.77 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 96.77 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.69 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.68 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 96.68 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 96.65 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.64 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.52 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.39 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 96.22 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 96.12 | |
| PHA01634 | 156 | hypothetical protein | 96.08 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 96.05 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.01 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.95 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.93 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.89 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 95.8 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.79 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.76 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 95.7 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 95.59 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.59 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 95.57 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 95.49 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 95.42 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.27 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.25 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.14 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 95.04 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.01 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 94.92 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.62 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 94.37 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 94.35 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.17 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 94.14 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 93.88 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.88 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 93.7 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 93.58 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.55 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.45 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 93.39 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 93.37 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 93.37 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 93.36 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 93.28 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 93.14 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 93.11 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 92.97 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 92.95 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 92.33 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.31 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 92.3 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 92.18 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 92.15 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 91.96 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 91.87 | |
| PF10017 | 127 | Methyltransf_33: Histidine-specific methyltransfer | 91.71 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 91.66 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 91.46 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 91.32 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 91.21 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 91.21 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 91.17 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 90.93 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 90.91 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 90.81 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 90.81 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 90.76 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 90.69 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 90.51 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 90.43 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 90.42 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 90.12 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 90.07 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.88 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 89.77 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 89.66 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 89.64 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 89.63 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 89.62 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 89.49 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 89.37 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 89.27 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 88.97 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 88.86 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 88.72 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 88.54 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 88.52 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 88.47 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 88.42 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 88.36 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 88.06 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 88.0 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 87.96 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 87.89 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 87.62 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 87.61 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 87.55 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.35 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 87.35 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 87.03 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 87.0 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 86.97 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.91 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 86.68 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.64 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 86.61 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 86.51 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 86.25 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.05 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 86.03 | |
| PLN02494 | 477 | adenosylhomocysteinase | 85.85 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 85.79 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 85.72 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 85.7 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 85.62 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 85.49 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.4 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 85.36 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 85.35 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 85.2 | |
| PF06557 | 170 | DUF1122: Protein of unknown function (DUF1122); In | 85.1 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 85.01 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 84.96 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 84.92 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 84.83 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 84.82 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 84.7 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 84.63 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 84.5 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 84.26 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 84.23 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 84.2 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 84.15 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 84.15 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 84.14 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 84.11 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 84.01 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 83.88 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 83.64 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 83.63 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 83.52 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 83.43 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 82.98 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 82.85 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 82.76 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 82.67 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 82.64 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 82.37 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 82.27 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 82.14 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 82.09 | |
| KOG2811 | 420 | consensus Uncharacterized conserved protein [Funct | 81.79 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 81.44 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 81.38 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 81.15 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 81.14 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 81.03 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 80.82 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 80.75 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 80.7 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 80.64 | |
| PF11253 | 127 | DUF3052: Protein of unknown function (DUF3052); In | 80.55 | |
| PF06016 | 1289 | Reovirus_L2: Reovirus core-spike protein lambda-2 | 80.47 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=231.12 Aligned_cols=215 Identities=40% Similarity=0.666 Sum_probs=190.7
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (222)
+..||++|+++|++.++.|++.+.+.....++.+|||+|||||..+..+++..+ .++|+++|+|+.|++.++++....+
T Consensus 21 a~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~ 99 (238)
T COG2226 21 AKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG 99 (238)
T ss_pred HHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC
Confidence 368999999999999999999999998888999999999999999999999975 7799999999999999999986544
Q ss_pred hhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhc-
Q 027517 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDN- 162 (222)
Q Consensus 84 ~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~- 162 (222)
. .+++++++|++++|+++.+||+|.+.+.|+++++++.+|++++|+|||||++++.++..+..+.......++...
T Consensus 100 ~---~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~ 176 (238)
T COG2226 100 V---QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKY 176 (238)
T ss_pred c---cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHh
Confidence 3 349999999999999999999999999999999999999999999999999999999998887766655555545
Q ss_pred ccccccccCC-hhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 163 VVVPVASGYG-LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 163 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
..+....... ..+.|+++..+...+.+.+++..+++++||+.+......+|..++.++.|
T Consensus 177 v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 177 VLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred HhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 4444433333 56779999999999999999999999999999999999999999888876
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=241.61 Aligned_cols=216 Identities=40% Similarity=0.679 Sum_probs=105.3
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (222)
.+.||.+|++++++.++.|++.+.+.....++.+|||+|||||..+..+++..++.++|+++|+|++|++.++++....+
T Consensus 17 a~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~ 96 (233)
T PF01209_consen 17 APRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG 96 (233)
T ss_dssp --------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT
T ss_pred HHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC
Confidence 36899999999999999999999998888889999999999999999999887777899999999999999999986544
Q ss_pred hhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcc
Q 027517 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNV 163 (222)
Q Consensus 84 ~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~ 163 (222)
. .+++++++|++++|+++++||+|++.+.+++++|+.+.+++++++|||||++++.+++.+..+.......++....
T Consensus 97 ~---~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~i 173 (233)
T PF01209_consen 97 L---QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYI 173 (233)
T ss_dssp -----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----
T ss_pred C---CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccc
Confidence 3 4899999999999999999999999999999999999999999999999999999999999887777777777665
Q ss_pred cccccccCCh-hHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 164 VVPVASGYGL-AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 164 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
.+.....+.. ...|+++..++..+.+.+++.++++++||+.++...+.+|...+++|+|
T Consensus 174 lP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 174 LPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 5544443333 2468999999999999999999999999999999999999999999987
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=220.40 Aligned_cols=219 Identities=79% Similarity=1.303 Sum_probs=185.6
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (222)
...||..++.++.+.++.|++.+.+.....++.+|||+|||+|..+..+++..++..+++++|+|++|++.++++.....
T Consensus 43 A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~ 122 (261)
T PLN02233 43 APVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA 122 (261)
T ss_pred hhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh
Confidence 35799999888899999998888888888888999999999999999988876566799999999999999987753211
Q ss_pred hhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcc
Q 027517 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNV 163 (222)
Q Consensus 84 ~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~ 163 (222)
.....++.++++|+.++|+++++||+|++++++++++++..++++++++|||||++++.++..++.+.......++....
T Consensus 123 ~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~ 202 (261)
T PLN02233 123 KSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNV 202 (261)
T ss_pred hccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhh
Confidence 11225899999999999988889999999999999999999999999999999999999999888777666666666555
Q ss_pred cccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 164 VVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
..+....++..+.|.++..+...+++++++.++++++||++++.....++...+++|+|
T Consensus 203 ~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 261 (261)
T PLN02233 203 VVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVATR 261 (261)
T ss_pred hhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEeC
Confidence 44544444555668888888889999999999999999999999999999999999875
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=201.41 Aligned_cols=218 Identities=38% Similarity=0.565 Sum_probs=184.9
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCC-----CcEEEEeCChhHHHHHhcc
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ-----GKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-----~~~~~~D~~~~~~~~~~~~ 78 (222)
+..||.+|+.++.+.|+.|...++..+...++.++||++||||..+..+.+..+.. .+|++.|++|+|++.++++
T Consensus 70 A~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540|consen 70 AKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred HHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH
Confidence 35699999999999999999999999999999999999999999999999987543 6899999999999999999
Q ss_pred hhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCC-chhhHHHH
Q 027517 79 QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQ-PFTTAIQE 157 (222)
Q Consensus 79 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~-~~~~~~~~ 157 (222)
....+.....++.++++|++++|+++.+||..++.+.+.+++++.+.+++.+|+|||||++...++...++ +.......
T Consensus 150 a~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ 229 (296)
T KOG1540|consen 150 AKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ 229 (296)
T ss_pred HhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh
Confidence 86654443345999999999999999999999999999999999999999999999999999999998775 44455555
Q ss_pred HHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEE-EeeecCCeeeeEeee
Q 027517 158 WMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK-HYELSGGLMGNLVAT 221 (222)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~-~~~~~~~~~~~~~~~ 221 (222)
+..+.....-....+....|+++..++.++.+.+++..+.+++||..+. ......|..+++.+-
T Consensus 230 ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~~ye~lt~Gv~aIH~gi 294 (296)
T KOG1540|consen 230 YSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNGYENLTFGVVAIHSGI 294 (296)
T ss_pred hhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccccccccceeeeeeeehhc
Confidence 5555543333334566677999999999999999999999999999997 666666666655543
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-31 Score=194.26 Aligned_cols=216 Identities=32% Similarity=0.605 Sum_probs=173.4
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (222)
...||.++...++..+..|+..++..+...++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++.....
T Consensus 15 a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~ 94 (231)
T TIGR02752 15 YKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG 94 (231)
T ss_pred hhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence 46789999999999999999888888888888999999999999999999887667799999999999999998875432
Q ss_pred hhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcc
Q 027517 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNV 163 (222)
Q Consensus 84 ~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~ 163 (222)
. ++++++++|+.+.++++++||+|++.++++++++...+++++.++|+|||.+++.+...+..+.......++....
T Consensus 95 ~---~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 171 (231)
T TIGR02752 95 L---HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYI 171 (231)
T ss_pred C---CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcCh
Confidence 2 5789999999888777788999999999999999999999999999999999998877665544333333322222
Q ss_pred cccccccCC-hhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 164 VVPVASGYG-LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
.+.....+. ....+.+.......+++.+++.++++++||+++++..+..|....++++|
T Consensus 172 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 172 MPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred hHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 111111111 11234445556678899999999999999999999999999999999987
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=183.59 Aligned_cols=203 Identities=21% Similarity=0.273 Sum_probs=166.4
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
.+.||..++.++++.+..|++.++..+.. .++.+|||+|||||..+..+++.. +.+++|+|+|++|++.++++.
T Consensus 19 A~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~-- 94 (226)
T PRK05785 19 PKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD-- 94 (226)
T ss_pred hHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--
Confidence 36799999999999998898877765532 346799999999999999998874 469999999999999987642
Q ss_pred hhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhh
Q 027517 82 VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMID 161 (222)
Q Consensus 82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~ 161 (222)
..+++|++++|+++++||+|++++++++++++.+++++++++|||. +.+.++..++......+..++..
T Consensus 95 ---------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~ 163 (226)
T PRK05785 95 ---------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLR 163 (226)
T ss_pred ---------ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHH
Confidence 3467899999998899999999999999999999999999999993 44566666666666666666665
Q ss_pred cccccccccCCh-hHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 162 NVVVPVASGYGL-AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
...+.....+.. ...|.++..++..+.+++++.++++++| ..++.....+|..++++++|
T Consensus 164 ~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 164 YIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 555444444333 4569999999999999999999999984 77899999999999999987
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=170.36 Aligned_cols=216 Identities=41% Similarity=0.732 Sum_probs=161.4
Q ss_pred hHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh
Q 027517 5 SLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 84 (222)
Q Consensus 5 ~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (222)
..|+.++.....+....+...++..+...++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++......
T Consensus 22 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 101 (239)
T PRK00216 22 PKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL 101 (239)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc
Confidence 55666665555666777777777777667788999999999999999998863357999999999999999988754221
Q ss_pred hcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccc
Q 027517 85 ACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVV 164 (222)
Q Consensus 85 ~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 164 (222)
..++.+...|+.+.+.+.++||+|++.+++++.++...+++++.+.|+|||.+++.+...+..........++.....
T Consensus 102 --~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~ 179 (239)
T PRK00216 102 --SGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVL 179 (239)
T ss_pred --ccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhh
Confidence 147889999998877666789999999999999999999999999999999999988776544322222222221111
Q ss_pred ccccccCCh-hHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 165 VPVASGYGL-AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 165 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
......+.. ...+..........++.+++.++++++||+++.+..+.++.+.+++|+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 180 PLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 111111111 1123334445566789999999999999999999999999999999986
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=166.29 Aligned_cols=213 Identities=40% Similarity=0.684 Sum_probs=163.7
Q ss_pred hHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh
Q 027517 5 SLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 84 (222)
Q Consensus 5 ~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (222)
..||..+..+.......|...+...+...++.+|||+|||+|..+..+++..+...+++++|+++.+++.++++.. .
T Consensus 10 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-- 86 (223)
T TIGR01934 10 PKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-- 86 (223)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c--
Confidence 4677777777777777888888887777788899999999999999999886333689999999999999988764 1
Q ss_pred hcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccc
Q 027517 85 ACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVV 164 (222)
Q Consensus 85 ~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 164 (222)
..++.+..+|+.+.+++.++||+|++++++++.+++..+++++.+.|+|||++++.+...+..........++.....
T Consensus 87 --~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (223)
T TIGR01934 87 --PLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVL 164 (223)
T ss_pred --CCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhh
Confidence 147899999998877666789999999999999999999999999999999999988776544333333333332222
Q ss_pred ccccccCC-hhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 165 VPVASGYG-LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 165 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
......+. ....+.+.......+++.++|..+++++||+++.+.+..++....++++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 165 PSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred hhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 22111111 11223344445566789999999999999999999999999888888876
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=161.67 Aligned_cols=172 Identities=24% Similarity=0.337 Sum_probs=127.6
Q ss_pred HHHHHhhCC-----CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 24 RMAVSWSGA-----KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 24 ~~~~~~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
..+++.... .++.+|||+|||+|..+..+++.+ +.+|+|+|+|+.+++.++++....+.. +++.+.++|+.
T Consensus 103 ~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~--~~v~~~~~D~~ 178 (340)
T PLN02244 103 EESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLS--DKVSFQVADAL 178 (340)
T ss_pred HHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEcCcc
Confidence 334555554 567899999999999999999875 569999999999999998876543321 47999999999
Q ss_pred CcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchh-hHHHHHHhhcccccccccCChhHHH
Q 027517 99 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMIDNVVVPVASGYGLAEEY 177 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (222)
++++++++||+|++..+++|+++...+++++.++|||||.+++.++........ ........ ...
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~--------------~~~ 244 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQ--------------KLL 244 (340)
T ss_pred cCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHH--------------HHH
Confidence 988888899999999999999999999999999999999999988654321110 00000000 000
Q ss_pred HHhHH--hHhhcCCHHHHHHHHHHcCCeEEEEeeecCC
Q 027517 178 QYLKS--SIREFLTGKDLEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 178 ~~~~~--~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
..+.. ....+.+.+++.++++++||+.++..++...
T Consensus 245 ~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 245 DKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred HHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHH
Confidence 00000 0112458999999999999999998877643
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=155.89 Aligned_cols=180 Identities=21% Similarity=0.186 Sum_probs=126.2
Q ss_pred CchhhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh
Q 027517 1 MLCFSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD 80 (222)
Q Consensus 1 ~~~~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (222)
|-+.+.|+..++...... ..+++.+...++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.++++
T Consensus 1 ~w~~~~y~~~~~~~~~~~-----~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-- 72 (255)
T PRK14103 1 MWDPDVYLAFADHRGRPF-----YDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-- 72 (255)
T ss_pred CCCHHHHHHHHhHhhCHH-----HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc--
Confidence 456778877765543221 334566666778899999999999999999885 667999999999999998653
Q ss_pred hhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHh
Q 027517 81 LVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMI 160 (222)
Q Consensus 81 ~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~ 160 (222)
++.+.++|+.+++ +.++||+|+++.++||++++..++++++++|||||.+++..+.....+..........
T Consensus 73 --------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 143 (255)
T PRK14103 73 --------GVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALAR 143 (255)
T ss_pred --------CCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhc
Confidence 5788899988764 4568999999999999999999999999999999999887544322222111111110
Q ss_pred hcccccccccCChhHHHHHh-HHhHhhcCCHHHHHHHHHHcCCeEEE
Q 027517 161 DNVVVPVASGYGLAEEYQYL-KSSIREFLTGKDLEKLALEIGFSRAK 206 (222)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~ 206 (222)
.. .+.. ..... ........+++++.++|+++||++..
T Consensus 144 ~~---~w~~------~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 144 RE---PWAK------LLRDIPFRVGAVVQTPAGYAELLTDAGCKVDA 181 (255)
T ss_pred cC---chhH------HhcccccccCcCCCCHHHHHHHHHhCCCeEEE
Confidence 00 0000 00000 00012356899999999999998544
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=160.51 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=120.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
++.+|||||||+|.++..+++. +.+|+|+|+++++++.++++...... ..++.++++|++++++.+++||+|++.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~--~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPV--TSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCc--ccceeEEecCHHHhhhccCCCCEEEEh
Confidence 4669999999999999988753 56999999999999999977532211 147899999998887766789999999
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHH-HHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQE-WMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
.+++|++++..+++++.++|||||.+++.+++.....+...... .+....... . .+.+..++++++
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~-g------------th~~~~f~tp~e 272 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPK-G------------THQWSSFVTPEE 272 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCC-C------------CcCccCCCCHHH
Confidence 99999999999999999999999999999877543211111100 000000000 0 012235789999
Q ss_pred HHHHHHHcCCeEEEEeeecC
Q 027517 193 LEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~~~ 212 (222)
+..+++++||++++...+..
T Consensus 273 L~~lL~~aGf~i~~~~G~~~ 292 (322)
T PLN02396 273 LSMILQRASVDVKEMAGFVY 292 (322)
T ss_pred HHHHHHHcCCeEEEEeeeEE
Confidence 99999999999998765543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=153.65 Aligned_cols=161 Identities=19% Similarity=0.278 Sum_probs=126.4
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..++..+...++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++... ..++.+.+.|+.+.+++
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~~~ 114 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKDFP 114 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCCCC
Confidence 456666778889999999999999999888763 56999999999999999987643 15799999999888887
Q ss_pred CCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchh-hHHHHHHhhcccccccccCChhHHHHHh
Q 027517 104 DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMIDNVVVPVASGYGLAEEYQYL 180 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (222)
+++||+|++..+++|++ ++..++++++++|||||.+++.++........ .....+..
T Consensus 115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~-------------------- 174 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIK-------------------- 174 (263)
T ss_pred CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHH--------------------
Confidence 78999999999888885 78899999999999999999998765432111 11111110
Q ss_pred HHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 181 KSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
.....+.+..++.++|+++||++++..+...
T Consensus 175 -~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~~ 205 (263)
T PTZ00098 175 -KRKYTLIPIQEYGDLIKSCNFQNVVAKDISD 205 (263)
T ss_pred -hcCCCCCCHHHHHHHHHHCCCCeeeEEeCcH
Confidence 0112356889999999999999999876543
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=145.93 Aligned_cols=160 Identities=68% Similarity=1.145 Sum_probs=130.5
Q ss_pred EEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 63 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 63 ~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+|+|+|++|++.|+++..........+++++++|+.++++++++||+|++.+++++++++..++++++++|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998765432211224799999999999988889999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 143 DFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
++..+..........|+......+..........|.++..+...+.+++++.++|+++||+.+.......|..+++++-|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 160 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAMR 160 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEeeC
Confidence 99987766665565665544444443333445668888888889999999999999999999999999999888887754
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=155.52 Aligned_cols=182 Identities=17% Similarity=0.260 Sum_probs=126.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.++.+|||+|||+|..+..+++.+ .++.+++++|+|+.|++.++++....+.. .++.+.++|+.+.+++ .+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~--~~v~~~~~d~~~~~~~--~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP--TPVDVIEGDIRDIAIE--NASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEeCChhhCCCC--CCCEEe
Confidence 467899999999999998888743 36779999999999999999987653321 4799999999887654 489999
Q ss_pred EcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhH-HHHHHhhcccccccccCChhHHHHH--hHHhHhh
Q 027517 112 MGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTA-IQEWMIDNVVVPVASGYGLAEEYQY--LKSSIRE 186 (222)
Q Consensus 112 ~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 186 (222)
++.++|++++ ...+++++++.|||||.+++.+........... ....+.. .....++...+..+. ...+...
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~---~~~~~g~s~~ei~~~~~~~~~~~~ 207 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHD---FKRANGYSELEISQKRSMLENVML 207 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHhhcc
Confidence 9999999853 468999999999999999999866544332211 1111110 011122222111111 1122344
Q ss_pred cCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 187 FLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 187 ~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
..|.++..++|+++||+.++.. +....+..++|+|
T Consensus 208 ~~~~~~~~~~L~~aGF~~v~~~-~~~~~f~~~~a~k 242 (247)
T PRK15451 208 TDSVETHKARLHKAGFEHSELW-FQCFNFGSLVALK 242 (247)
T ss_pred cCCHHHHHHHHHHcCchhHHHH-HHHHhHHHHhhee
Confidence 5799999999999999987654 3344455555544
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=149.76 Aligned_cols=161 Identities=25% Similarity=0.303 Sum_probs=125.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
++.+|||+|||.|.++..+++. +.+|+|+|+++++++.|+.+....+ -++++.+..++++....++||+|+|.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESG----VNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcc----ccccchhhhHHHHHhcCCCccEEEEh
Confidence 6889999999999999999976 5799999999999999998875543 35678888888876655899999999
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHH
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 193 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (222)
.+++|++++..+++.+.+.+||||.++++++++....+...+..-..---+.+.. .+....+..++|+
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~g------------TH~~~k~irp~El 199 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKG------------THDYRKFIKPAEL 199 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCc------------chhHHHhcCHHHH
Confidence 9999999999999999999999999999998865443332221111000011111 1234567789999
Q ss_pred HHHHHHcCCeEEEEeeecCC
Q 027517 194 EKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 194 ~~~l~~~Gf~~~~~~~~~~~ 213 (222)
...+.++|+.+.....+...
T Consensus 200 ~~~~~~~~~~~~~~~g~~y~ 219 (243)
T COG2227 200 IRWLLGANLKIIDRKGLTYN 219 (243)
T ss_pred HHhcccCCceEEeecceEec
Confidence 99999999999887766554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=161.44 Aligned_cols=162 Identities=23% Similarity=0.350 Sum_probs=126.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+++.+...++.+|||+|||+|..+..+++.. +.+++|+|+|+.+++.++++..... .++.+.++|+...+++
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~----~~v~~~~~d~~~~~~~ 329 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK----CSVEFEVADCTKKTYP 329 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC----CceEEEEcCcccCCCC
Confidence 345555566778899999999999999988874 5689999999999999987754222 4789999999888777
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+++||+|++..+++|++++..++++++++|||||.+++.++.............+.. ..
T Consensus 330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---------------------~~ 388 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIK---------------------QR 388 (475)
T ss_pred CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHH---------------------hc
Confidence 778999999999999999999999999999999999999876543222111111111 11
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
.....+.+++.++++++||+++.......
T Consensus 389 g~~~~~~~~~~~~l~~aGF~~i~~~d~~~ 417 (475)
T PLN02336 389 GYDLHDVQAYGQMLKDAGFDDVIAEDRTD 417 (475)
T ss_pred CCCCCCHHHHHHHHHHCCCeeeeeecchH
Confidence 12356889999999999999997765443
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=142.22 Aligned_cols=153 Identities=28% Similarity=0.432 Sum_probs=111.0
Q ss_pred hHHHHHHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 20 RIWKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+.+...+..+.. ..++.+|||+|||+|.++..+.+. +.+++++|+++.+++. . ++.....+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~---~----------~~~~~~~~~~ 70 (161)
T PF13489_consen 7 RAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK---R----------NVVFDNFDAQ 70 (161)
T ss_dssp HCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH---T----------TSEEEEEECH
T ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh---h----------hhhhhhhhhh
Confidence 334444444443 567889999999999999999655 4499999999999988 1 2333333333
Q ss_pred CcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHH
Q 027517 99 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQ 178 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (222)
....++++||+|+++.+++|++++..+++++.++|||||.+++.++.... ........|.. .
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~-----------------~ 132 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD-PSPRSFLKWRY-----------------D 132 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS-HHHHHHHHCCG-----------------T
T ss_pred hhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc-hhhhHHHhcCC-----------------c
Confidence 44445678999999999999999999999999999999999999887643 11111111110 0
Q ss_pred HhHHhHhhcCCHHHHHHHHHHcCCeEEE
Q 027517 179 YLKSSIREFLTGKDLEKLALEIGFSRAK 206 (222)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 206 (222)
.....+..+++.+++..+++++||++++
T Consensus 133 ~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 133 RPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp CHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred CccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 0011234688999999999999999986
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=150.76 Aligned_cols=163 Identities=19% Similarity=0.194 Sum_probs=117.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~ 111 (222)
.++.+|||+|||+|..+..+++. +.+|+++|+|+++++.++++....+.. .++.++++|+.+++ .+.++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~--~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVS--DNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCc--cceEEEEcCHHHHhhhcCCCCCEEE
Confidence 45679999999999999999875 468999999999999999887544321 57899999988763 4457899999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHh--hcccccccccCChhHHHHHhHHhHhhcCC
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMI--DNVVVPVASGYGLAEEYQYLKSSIREFLT 189 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (222)
+..+++|++++..+++++.++|||||.+++..++.........+..... ....... .. . .......++
T Consensus 118 ~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~------~---~~~p~~~~~ 187 (255)
T PRK11036 118 FHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKR-KK------R---TLSPDYPLD 187 (255)
T ss_pred ehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccc-cc------c---CCCCCCCCC
Confidence 9999999999999999999999999999988766532211111100000 0000000 00 0 000123578
Q ss_pred HHHHHHHHHHcCCeEEEEeee
Q 027517 190 GKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 190 ~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
++++.++++++||+++.....
T Consensus 188 ~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 188 PEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHHHHHCCCeEeeeeeE
Confidence 999999999999999876543
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-22 Score=150.85 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=122.4
Q ss_pred HHHHHHHHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 21 IWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 21 ~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
.++..+++.... .++.+|||+|||+|..+..+++.. +..+++++|+++++++.++++... .+++++.+|+.+
T Consensus 99 ~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~ 171 (340)
T PLN02490 99 DMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAED 171 (340)
T ss_pred HHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHh
Confidence 344444443333 457799999999999999988875 446899999999999999987531 478899999998
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
+++++++||+|+++.+++++++...+++++.++|+|||.+++.+...+..... +...
T Consensus 172 lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~----r~~~------------------- 228 (340)
T PLN02490 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLS----RFFA------------------- 228 (340)
T ss_pred CCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHH----HHhh-------------------
Confidence 88877889999999999999999999999999999999998876543221110 0000
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
..+..+.+.+++.++++++||+.++..+...
T Consensus 229 --~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~ 259 (340)
T PLN02490 229 --DVWMLFPKEEEYIEWFTKAGFKDVKLKRIGP 259 (340)
T ss_pred --hhhccCCCHHHHHHHHHHCCCeEEEEEEcCh
Confidence 0111245789999999999999998877544
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-23 Score=151.96 Aligned_cols=182 Identities=16% Similarity=0.187 Sum_probs=126.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.++.+|||+|||+|..+..+++.+. ++.+++++|+|+.+++.++++....... .++.++++|+.+++++ ++|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~--~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE--IPVEILCNDIRHVEIK--NASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEECChhhCCCC--CCCEEe
Confidence 4677999999999999999988652 5779999999999999999887543221 4789999999987654 489999
Q ss_pred EcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchh-hHHHHHHhhcccccccccCChhHHHHH--hHHhHhh
Q 027517 112 MGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMIDNVVVPVASGYGLAEEYQY--LKSSIRE 186 (222)
Q Consensus 112 ~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 186 (222)
+.+++|+++ +...++++++++|+|||.+++.+......... ......+... . ...++...+.... ...+...
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~--~-~~~g~~~~~~~~~~~~~~~~~~ 204 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQF--K-RANGYSELEISQKRTALENVMR 204 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHH--H-HHcCCCHHHHHHHHHHHhccCC
Confidence 999999985 45789999999999999999998765443321 1111111000 0 0011111111111 1112345
Q ss_pred cCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 187 FLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 187 ~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
.+|.+++.++++++||+.++... ..+.+..++|+|
T Consensus 205 ~~s~~~~~~~l~~aGF~~~~~~~-~~~~~~~~~~~~ 239 (239)
T TIGR00740 205 TDSIETHKARLKNVGFSHVELWF-QCFNFGSLVAVK 239 (239)
T ss_pred CCCHHHHHHHHHHcCCchHHHHH-HHHhHhHHheeC
Confidence 78999999999999999776442 234556666654
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=144.21 Aligned_cols=168 Identities=32% Similarity=0.510 Sum_probs=125.9
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.++..+.+.+...++.+|||+|||+|.++..+++.+++..+++++|+++.+++.++++..... .++.+...|+...
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~ 81 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG----PNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC----CceEEEecccccC
Confidence 345566777788888999999999999999999886566799999999999999988732221 5789999999887
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCch----hhHHHHHHhhcccccccccCChhHH
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF----TTAIQEWMIDNVVVPVASGYGLAEE 176 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (222)
++++++||+|++..++++++++..+++++.++|+|||.+++.++....... ........
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~----------------- 144 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKIL----------------- 144 (241)
T ss_pred CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHH-----------------
Confidence 777788999999999999999999999999999999999988754321111 00111110
Q ss_pred HHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 177 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
...........+..++.++++++||+.+.....
T Consensus 145 -~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 145 -NFWSDHFADPWLGRRLPGLFREAGLTDIEVEPY 177 (241)
T ss_pred -HHHHhcCCCCcHHHHHHHHHHHcCCCceeEEEE
Confidence 001111122345678999999999998765544
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=135.52 Aligned_cols=109 Identities=34% Similarity=0.572 Sum_probs=96.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v 110 (222)
.++.+|||+|||+|..+..+++...++.+++|+|+++++++.++++....+. ++++++++|+.+++ ++ ++||+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~---~ni~~~~~d~~~l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL---DNIEFIQGDIEDLPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS---TTEEEEESBTTCGCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc---cccceEEeehhccccccC-CCeeEE
Confidence 3567999999999999999996656778999999999999999998765543 48999999999976 44 789999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++..+++++.++..+++++.+.|+++|.+++.+..
T Consensus 78 ~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999999998777
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=146.26 Aligned_cols=157 Identities=28% Similarity=0.402 Sum_probs=121.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
...++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++....+. .++.+..+|+.++++++++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~---~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY---TNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC---CCEEEEEcchhhCCCCCCceeEE
Confidence 456788999999999998888887766666899999999999999988654432 57899999999888777789999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCH
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (222)
+++.++++.++...+++++.++|||||++++.++....... ...... ...........++.
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~-~~~~~~------------------~~~~~~~~~~~~~~ 211 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELP-EEIRND------------------AELYAGCVAGALQE 211 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCC-HHHHHh------------------HHHHhccccCCCCH
Confidence 99999999999999999999999999999998876533211 111100 00011111234678
Q ss_pred HHHHHHHHHcCCeEEEEee
Q 027517 191 KDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 191 ~~~~~~l~~~Gf~~~~~~~ 209 (222)
+++.++++++||..+++..
T Consensus 212 ~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 212 EEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred HHHHHHHHHCCCCceEEEe
Confidence 8999999999999877643
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-21 Score=142.54 Aligned_cols=155 Identities=22% Similarity=0.332 Sum_probs=118.1
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+.....+++.+...++.+|||+|||+|..+..+.+. +.+++++|+|+.+++.++++. ....++++|++.
T Consensus 28 ~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~ 96 (251)
T PRK10258 28 RQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKD--------AADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC--------CCCCEEEcCccc
Confidence 344455666666556789999999999999888754 468999999999999998874 245678899998
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
+++++++||+|+++.++++.+++..++.++.++|+|||.+++..+.....+... ..|..-.
T Consensus 97 ~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~--~~~~~~~----------------- 157 (251)
T PRK10258 97 LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELH--QAWQAVD----------------- 157 (251)
T ss_pred CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHH--HHHHHhc-----------------
Confidence 888778899999999999999999999999999999999999887754422111 1111100
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeE
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSR 204 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~ 204 (222)
......++++.+++..++++.|++.
T Consensus 158 ~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 158 ERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred cCCccccCCCHHHHHHHHHhCCcee
Confidence 0012235678899999999888764
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-22 Score=143.31 Aligned_cols=157 Identities=24% Similarity=0.352 Sum_probs=117.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCC----CeeEEeCCCCCcCCCCCceeEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYK----NIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~d~~~~~~~~~~~D~v 110 (222)
+.+|||+|||+|-++.+|++. +..|+|+|.++++++.|+++....+. ... ++++.+.|++.+ .++||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~-~~~~~~y~l~~~~~~~E~~---~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPV-LEGAIAYRLEYEDTDVEGL---TGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCch-hccccceeeehhhcchhhc---cccccee
Confidence 478999999999999999987 57999999999999999999544332 222 356666676665 3459999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcc--cccccccCChhHHHHHhHHhHhhcC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNV--VVPVASGYGLAEEYQYLKSSIREFL 188 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (222)
+|..+++|+.++..+++.+.+.|||||.+++.+..+.-..+...+ ++.+.. ++|... +.+..+.
T Consensus 163 vcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i--~~~E~vl~ivp~Gt------------h~~ekfi 228 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTI--FLAEIVLRIVPKGT------------HTWEKFI 228 (282)
T ss_pred eeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccc--cHHHHHHHhcCCCC------------cCHHHcC
Confidence 999999999999999999999999999999998886543222111 111111 111111 2345678
Q ss_pred CHHHHHHHHHHcCCeEEEEeeecC
Q 027517 189 TGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 189 ~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
++.++..+++.+|+.+..+....+
T Consensus 229 ~p~e~~~~l~~~~~~v~~v~G~~y 252 (282)
T KOG1270|consen 229 NPEELTSILNANGAQVNDVVGEVY 252 (282)
T ss_pred CHHHHHHHHHhcCcchhhhhcccc
Confidence 999999999999999877655443
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=141.72 Aligned_cols=128 Identities=24% Similarity=0.282 Sum_probs=104.3
Q ss_pred hhhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh
Q 027517 3 CFSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 82 (222)
Q Consensus 3 ~~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (222)
|.+.|+.+... .....+.++..+...++.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.++++.
T Consensus 5 ~~~~Y~~~~~~-----~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~--- 75 (258)
T PRK01683 5 NPSLYLKFEDE-----RTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL--- 75 (258)
T ss_pred CHHHHHHHHHH-----hhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC---
Confidence 45778775532 22334455666666778899999999999999999885 5679999999999999998875
Q ss_pred hhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 83 SKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 83 ~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+++.+..+|+.+.. +..+||+|+++.+++++++...+++++.++|+|||.+++..+.
T Consensus 76 -----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 76 -----PDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred -----CCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 47889999987754 3458999999999999999999999999999999999886433
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-21 Score=146.93 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=116.2
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
+...+...++.+|||+|||+|.++..+++. ++ ..|+|+|+|+.++..++........ ..++.+..+|+++++. .+
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~--~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGN--DQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEeCCHHHCCC-cC
Confidence 344555456789999999999999999887 33 3699999999988765432211111 1479999999998887 67
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
+||+|+|..+++|..++..+++++++.|+|||.+++.++............. ..|..+. ...
T Consensus 189 ~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~-----------------~~y~~~~-~~~ 250 (322)
T PRK15068 189 AFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG-----------------DRYAKMR-NVY 250 (322)
T ss_pred CcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch-----------------hHHhcCc-cce
Confidence 8999999999999999999999999999999999887654322111100000 0010000 001
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
...|.+++.++|+++||+++++....
T Consensus 251 ~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 251 FIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred eCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 23588999999999999999877554
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=138.91 Aligned_cols=189 Identities=18% Similarity=0.209 Sum_probs=126.4
Q ss_pred hHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHh---CCCCcEEEEeCChhHHHHHhcchhh
Q 027517 5 SLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 5 ~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
..|+..|.... +....+...+...+...++.+|||+|||+|..+..+++.. +++.+++++|+++++++.++++...
T Consensus 32 ~~~~~~n~~~~-~~~~~~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 110 (232)
T PRK06202 32 AGFRRVNRIVA-GWRGLYRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR 110 (232)
T ss_pred HHHHHHHHHhc-ccHHHHHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc
Confidence 44555555544 3345555554444444567799999999999998887643 2345899999999999999887532
Q ss_pred hhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHH
Q 027517 82 VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWM 159 (222)
Q Consensus 82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~ 159 (222)
.++.+...+...++.++++||+|++++++||+++. ..+++++.++++ |.+++.++..+...+........
T Consensus 111 ------~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~ 182 (232)
T PRK06202 111 ------PGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTR 182 (232)
T ss_pred ------CCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHH
Confidence 35666666666665556789999999999999774 579999999998 67777777765322211111100
Q ss_pred hhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 160 IDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
....+.+.. .....++.+.++++++.+++++ ||++...+.+..
T Consensus 183 -----~~~~~~~~~----~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~~~~ 225 (232)
T PRK06202 183 -----LLSRSSFVH----TDGLLSVRRSYTPAELAALAPQ-GWRVERQWPFRY 225 (232)
T ss_pred -----HhccCceee----ccchHHHHhhcCHHHHHHHhhC-CCeEEeccceee
Confidence 000000000 0012355678999999999999 999887765543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=141.82 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=113.2
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCc
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 106 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (222)
+..+...++++|||+|||+|.++..++.. ++ ..|+|+|+|+.++..++........ ..++.+...++.+++.. .+
T Consensus 114 l~~l~~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~~--~~~v~~~~~~ie~lp~~-~~ 188 (314)
T TIGR00452 114 LPHLSPLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLDN--DKRAILEPLGIEQLHEL-YA 188 (314)
T ss_pred HHhcCCCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhcc--CCCeEEEECCHHHCCCC-CC
Confidence 33445566789999999999999888866 22 3799999999998765432111111 14678888888887654 47
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhh
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 186 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (222)
||+|++..+++|.+++..+++++++.|+|||.+++.+.............. ..|..+. ....
T Consensus 189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-----------------~ry~k~~-nv~f 250 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-----------------DRYAKMK-NVYF 250 (314)
T ss_pred cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-----------------HHHHhcc-cccc
Confidence 999999999999999999999999999999999987654322110000000 0010000 1112
Q ss_pred cCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 187 FLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 187 ~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.++..++.++++++||+.+++....
T Consensus 251 lpS~~~L~~~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 251 IPSVSALKNWLEKVGFENFRILDVL 275 (314)
T ss_pred CCCHHHHHHHHHHCCCeEEEEEecc
Confidence 4588999999999999999876543
|
Known examples to date are restricted to the proteobacteria. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=141.83 Aligned_cols=164 Identities=23% Similarity=0.300 Sum_probs=114.6
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+.+.+...|+.+|||||||.|.++..+++.+ +++|+|+.+|+++.+.++++....+.. .++++...|..+++.
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~--~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLE--DRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSS--STEEEEES-GGG----
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEeeccccCC-
Confidence 355666788999999999999999999999996 679999999999999999998766543 678999999887643
Q ss_pred CCceeEEEEcccccCc--ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHH---HHHHhhcccccccccCChhHHHH
Q 027517 104 DCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI---QEWMIDNVVVPVASGYGLAEEYQ 178 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 178 (222)
+||.|++..+++|+ .+....++++.++|+|||.+++..+........... ..|+.....
T Consensus 127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiF-------------- 190 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIF-------------- 190 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTS--------------
T ss_pred --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeC--------------
Confidence 89999999999999 467899999999999999999887776543322110 022221111
Q ss_pred HhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 179 YLKSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
+ ...+.+..++...++++||++........
T Consensus 191 --P--gg~lps~~~~~~~~~~~~l~v~~~~~~~~ 220 (273)
T PF02353_consen 191 --P--GGYLPSLSEILRAAEDAGLEVEDVENLGR 220 (273)
T ss_dssp --T--TS---BHHHHHHHHHHTT-EEEEEEE-HH
T ss_pred --C--CCCCCCHHHHHHHHhcCCEEEEEEEEcCc
Confidence 0 11345788999999999999998876543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=138.44 Aligned_cols=163 Identities=24% Similarity=0.315 Sum_probs=129.7
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
+.+.+.++..||.+|||||||.|.++.++++.+ +++|+|+++|+++.+.+++++...+.. .+++++..|..++.
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~--~~v~v~l~d~rd~~-- 135 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLE--DNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCC--cccEEEeccccccc--
Confidence 456677889999999999999999999999996 679999999999999999988766543 58999999988874
Q ss_pred CCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 104 DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
++||.|++...++|+.. .+..++.++++|+|||.+++..+..+..+.. ....|+.....+.
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~~~~~i~~yiFPg--------------- 198 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-RFPDFIDKYIFPG--------------- 198 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-cchHHHHHhCCCC---------------
Confidence 44999999999999954 8999999999999999999998887765442 2222222111111
Q ss_pred HhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 182 SSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
..+.+..++....+++||.+.....+..
T Consensus 199 ---G~lPs~~~i~~~~~~~~~~v~~~~~~~~ 226 (283)
T COG2230 199 ---GELPSISEILELASEAGFVVLDVESLRP 226 (283)
T ss_pred ---CcCCCHHHHHHHHHhcCcEEehHhhhcH
Confidence 1345778888889999999887665544
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=136.04 Aligned_cols=147 Identities=17% Similarity=0.125 Sum_probs=109.5
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
+.+.+...++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+. .++.+.+.|+.+.+++ +
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENL---DNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCC---CcceEEecChhhCCcC-C
Confidence 444555556789999999999999999975 56999999999999999987654332 4688888998876654 5
Q ss_pred ceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 106 FFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+||+|+++.++|+++ +...+++++.++|+|||.+++............ . .
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~---------------~-------------~ 146 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT---------------V-------------G 146 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC---------------C-------------C
Confidence 799999999998875 568899999999999999766543332211000 0 0
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEee
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~ 209 (222)
....++..++.+.++ ||+++...+
T Consensus 147 ~~~~~~~~el~~~~~--~~~~~~~~~ 170 (197)
T PRK11207 147 FPFAFKEGELRRYYE--GWEMVKYNE 170 (197)
T ss_pred CCCccCHHHHHHHhC--CCeEEEeeC
Confidence 012467889988886 899887643
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=138.31 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=116.2
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEccc
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 115 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 115 (222)
++|||+|||+|..+..+++.+ ++.+++++|+|+++++.++++....+.. .++.+...|....+.+ ++||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~--~~i~~~~~d~~~~~~~-~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQ--GRIRIFYRDSAKDPFP-DTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCC--cceEEEecccccCCCC-CCCCEeehHHH
Confidence 379999999999999999885 5578999999999999999887543322 5789999998765554 57999999999
Q ss_pred ccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHH
Q 027517 116 LRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEK 195 (222)
Q Consensus 116 l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (222)
++|+++...++++++++|+|||.+++.++...... ... .. .......+..+|.+
T Consensus 77 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~------------~~-----------~~~~~~~s~~~~~~ 130 (224)
T smart00828 77 IHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLS---AIE------------HE-----------ETTSYLVTREEWAE 130 (224)
T ss_pred HHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCc---ccc------------cc-----------ccccccCCHHHHHH
Confidence 99999999999999999999999999876532100 000 00 00012568899999
Q ss_pred HHHHcCCeEEEEeeecCC
Q 027517 196 LALEIGFSRAKHYELSGG 213 (222)
Q Consensus 196 ~l~~~Gf~~~~~~~~~~~ 213 (222)
+++++||++++......+
T Consensus 131 ~l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 131 LLARNNLRVVEGVDASLE 148 (224)
T ss_pred HHHHCCCeEEEeEECcHh
Confidence 999999999988776554
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-21 Score=121.82 Aligned_cols=95 Identities=37% Similarity=0.642 Sum_probs=83.5
Q ss_pred EEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccC
Q 027517 39 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 118 (222)
Q Consensus 39 LdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 118 (222)
||+|||+|..+..+++. +..+++++|+++++++.++++... .++.+...|..++++++++||+|++..+++|
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceee
Confidence 89999999999999987 467999999999999999998743 3566999999999999999999999999999
Q ss_pred cccHHHHHHHHhcccCCCcEEEE
Q 027517 119 VVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 119 ~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
++++..++++++++|||||++++
T Consensus 73 ~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 73 LEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=129.24 Aligned_cols=186 Identities=17% Similarity=0.129 Sum_probs=137.6
Q ss_pred hhhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh
Q 027517 3 CFSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 82 (222)
Q Consensus 3 ~~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (222)
|.++|-.|.+..+.... .++..+...+..+|.|+|||+|..+..+++++ |+..++|+|.|++|++.|++++
T Consensus 4 ~p~~Yl~F~~eRtRPa~-----dLla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl--- 74 (257)
T COG4106 4 NPDQYLQFEDERTRPAR-----DLLARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL--- 74 (257)
T ss_pred CHHHHHHHHHhccCcHH-----HHHhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC---
Confidence 56778777766554433 34556677778899999999999999999997 7889999999999999999887
Q ss_pred hhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhc
Q 027517 83 SKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDN 162 (222)
Q Consensus 83 ~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~ 162 (222)
+++++..+|+.+... ..+.|+++++.++++++|...++.++...|.|||.|.+..+..-..+....+.......
T Consensus 75 -----p~~~f~~aDl~~w~p-~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~ 148 (257)
T COG4106 75 -----PDATFEEADLRTWKP-EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEA 148 (257)
T ss_pred -----CCCceecccHhhcCC-CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcC
Confidence 799999999998763 46789999999999999999999999999999999998877665555544444332211
Q ss_pred ccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 163 VVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
++...++. ....-....++...-++|...+-++--..+...
T Consensus 149 ---p~~~~l~~------~~~~r~~v~s~a~Yy~lLa~~~~rvDiW~T~Y~ 189 (257)
T COG4106 149 ---PFAQELGG------RGLTRAPLPSPAAYYELLAPLACRVDIWHTTYY 189 (257)
T ss_pred ---chhhhhCc------cccccCCCCCHHHHHHHhCcccceeeeeeeecc
Confidence 11110000 000012356788888888888777655544443
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=128.59 Aligned_cols=171 Identities=24% Similarity=0.281 Sum_probs=129.4
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCee-EEeCCCCCcC-CCCCc
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIE-WVEGDALDLP-FSDCF 106 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~ 106 (222)
++.......|||+|||||......-- .+..+|+++|.++.|-+.+.+..+... +.++. ++.++.++++ .++.+
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l~d~s 145 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQLADGS 145 (252)
T ss_pred HhcccCccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCcccccCC
Confidence 44444455789999999999876543 267799999999999999988875543 35777 8889999987 67899
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhh
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 186 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (222)
+|.|++..++....++.+.|++++++|||||++++.+........+..+.+...+........+ -
T Consensus 146 ~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dG---------------C 210 (252)
T KOG4300|consen 146 YDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDG---------------C 210 (252)
T ss_pred eeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccc---------------e
Confidence 9999999999999999999999999999999999999998776655554443332211111111 1
Q ss_pred cCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEee
Q 027517 187 FLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVA 220 (222)
Q Consensus 187 ~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 220 (222)
.++. +..+.|+++-|+..+..+.+.+.-..+++
T Consensus 211 ~ltr-d~~e~Leda~f~~~~~kr~~~~ttw~~V~ 243 (252)
T KOG4300|consen 211 VLTR-DTGELLEDAEFSIDSCKRFNFGTTWVIVE 243 (252)
T ss_pred EEeh-hHHHHhhhcccccchhhcccCCceEEEEe
Confidence 2344 44578889999999998888876655553
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=138.29 Aligned_cols=163 Identities=12% Similarity=0.182 Sum_probs=118.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+.+.....+..+|||+|||+|..+..+++.+ |+.+++++|. +.+++.++++....+.. ++++++.+|+.+.+++
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~--~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA--DRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCcc--ceEEEEecCccCCCCC
Confidence 445555666778899999999999999999995 6779999997 78999998877654332 5799999999865554
Q ss_pred CCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCc--hhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 104 DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQP--FTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
.+|+|++..++|++++ ...+++++++.|+|||++++.++..+... .......... ....
T Consensus 215 --~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~-----~~~~---------- 277 (306)
T TIGR02716 215 --EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYIL-----GAGM---------- 277 (306)
T ss_pred --CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHH-----Hccc----------
Confidence 3699999999998854 36799999999999999999987543322 1111111111 0000
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEEEe
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAKHY 208 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 208 (222)
........+.+++.++|+++||+.++..
T Consensus 278 -~~~~~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 278 -PFSVLGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred -ccccccCCCHHHHHHHHHHcCCCeeEec
Confidence 0011124457999999999999988754
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-20 Score=129.18 Aligned_cols=164 Identities=28% Similarity=0.440 Sum_probs=121.2
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-CCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PFS 103 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~ 103 (222)
+.+++ +|+.+|||+|||.|.+..++.+. .+.+.+|+|++++.+..+.++ .+.++++|+.+ + .++
T Consensus 7 I~~~I--~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f~ 72 (193)
T PF07021_consen 7 IAEWI--EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADFP 72 (193)
T ss_pred HHHHc--CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhCC
Confidence 34444 67899999999999999999986 477999999999999888776 68899999986 3 378
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+++||.|+++.++.++.++..+|+++.|+ |...+++.++.. .+...+.-.... ..|.. ..-.|++..++
T Consensus 73 d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg--~W~~R~~l~~~G--rmPvt----~~lPy~WYdTP 141 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFG--HWRNRLQLLLRG--RMPVT----KALPYEWYDTP 141 (193)
T ss_pred CCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChH--HHHHHHHHHhcC--CCCCC----CCCCCcccCCC
Confidence 89999999999999999999999988665 446655543311 111111111111 11111 11235666677
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeeecCCe
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYELSGGL 214 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 214 (222)
+.++.|.+++++++++.|+++.+......+.
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 7889999999999999999999887766543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=122.72 Aligned_cols=106 Identities=34% Similarity=0.545 Sum_probs=87.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC-CCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~ 112 (222)
|+.+|||+|||+|..+..+++.. ++.+++++|+|+++++.++++....... +++.+++.|+ ..... .++||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~-~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLS--DRITFVQGDAEFDPDF-LEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTT--TTEEEEESCCHGGTTT-SSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEECccccCccc-CCCCCEEEE
Confidence 57899999999999999999964 6789999999999999999998433222 7999999999 33333 356999999
Q ss_pred cc-cccCc---ccHHHHHHHHhcccCCCcEEEEEe
Q 027517 113 GY-GLRNV---VDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 113 ~~-~l~~~---~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.. .++++ ++..++++++++.|+|||++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99 55434 456889999999999999998864
|
... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=132.04 Aligned_cols=106 Identities=35% Similarity=0.538 Sum_probs=93.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++.. +++.++..|+.+.++++++||+|+++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~ 105 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSN 105 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEh
Confidence 34689999999999999999884 56789999999999999887753 37889999999888777889999999
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
.++++..++..+++++.++|+|||.+++.++...
T Consensus 106 ~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 106 LALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred hhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 9999999999999999999999999999876543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=123.56 Aligned_cols=145 Identities=23% Similarity=0.272 Sum_probs=113.1
Q ss_pred cchhhHHHHHHHHhh----CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCee
Q 027517 16 FGQHRIWKRMAVSWS----GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIE 91 (222)
Q Consensus 16 ~~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (222)
...++.|.+++++.. ..+++.+|||+|||+|..+..+++.. ++.+|+++|+++++++.++++.+..+. .+++
T Consensus 23 ~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l---~~i~ 98 (187)
T PRK00107 23 RDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL---KNVT 98 (187)
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC---CCEE
Confidence 344566777665533 23447899999999999999998764 677999999999999999998876543 4699
Q ss_pred EEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccC
Q 027517 92 WVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 171 (222)
Q Consensus 92 ~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (222)
+.++|+.+++. .++||+|+++. +.+...+++.+++.|+|||.+++.....
T Consensus 99 ~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------------- 148 (187)
T PRK00107 99 VVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRD------------------------- 148 (187)
T ss_pred EEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCC-------------------------
Confidence 99999988765 57899999975 3567889999999999999998864221
Q ss_pred ChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 172 GLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
...++.++.+..|+.+.+.+.+.
T Consensus 149 -----------------~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 149 -----------------PEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred -----------------hHHHHHHHHHhcCceEeeeEEEe
Confidence 23467778888899987776664
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-19 Score=127.49 Aligned_cols=146 Identities=12% Similarity=0.024 Sum_probs=106.6
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+.+.+...++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++..... -++.....|+...+++
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~- 92 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKAREN----LPLRTDAYDINAAALN- 92 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhC----CCceeEeccchhcccc-
Confidence 3445555556679999999999999999975 5699999999999999988764332 2466777777655544
Q ss_pred CceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 105 CFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
++||+|+++.++++++ +...++++++++|+|||++++.+...........
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~---------------------------- 144 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHM---------------------------- 144 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCC----------------------------
Confidence 5799999999999884 5678999999999999997766543322100000
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEe
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHY 208 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~ 208 (222)
.....+++.++.++++ +|+++...
T Consensus 145 ~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 145 PFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CcCccCCHHHHHHHhC--CCeEEEee
Confidence 0012468899999885 68888766
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-19 Score=129.25 Aligned_cols=172 Identities=23% Similarity=0.262 Sum_probs=120.3
Q ss_pred hhHHHHHHHHhhC--CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC
Q 027517 19 HRIWKRMAVSWSG--AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 96 (222)
Q Consensus 19 ~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 96 (222)
...++..+++++. ..++.+|||+|||+|.++..+++. +.+++|+|+++++++.++++....... .++.+.+.|
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~--~~i~~~~~d 112 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVA--GNVEFEVND 112 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEECC
Confidence 3455566666665 456789999999999999999865 458999999999999999887543211 378999999
Q ss_pred CCCcCCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChh
Q 027517 97 ALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLA 174 (222)
Q Consensus 97 ~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (222)
+.+.+ ++||+|++..+++|++ +...+++++.+.+++++.+.+. . ........ .+..... ....
T Consensus 113 ~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~---~-~~~~~~~~-~~~~~~~-~~~~------ 177 (219)
T TIGR02021 113 LLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA---P-KTAWLAFL-KMIGELF-PGSS------ 177 (219)
T ss_pred hhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC---C-CchHHHHH-HHHHhhC-cCcc------
Confidence 88764 6799999999998885 3577899999988876555432 1 11111111 1111100 0000
Q ss_pred HHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeee
Q 027517 175 EEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMG 216 (222)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 216 (222)
......+++++++.++++++||+++.......+.+.
T Consensus 178 ------~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~~~ 213 (219)
T TIGR02021 178 ------RATSAYLHPMTDLERALGELGWKIVREGLVSTGFYN 213 (219)
T ss_pred ------cccceEEecHHHHHHHHHHcCceeeeeecccccchh
Confidence 001124679999999999999999998877777654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-20 Score=120.34 Aligned_cols=97 Identities=31% Similarity=0.481 Sum_probs=65.8
Q ss_pred EEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-C-CCCceeEEEEcccc
Q 027517 39 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-F-SDCFFDAITMGYGL 116 (222)
Q Consensus 39 LdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~-~~~~~D~v~~~~~l 116 (222)
||+|||+|.++..+++.+ +..+++++|+|+.+++.++++...... .+......+..+.. . ..++||+|++..++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN---DNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC---cceeEEEeecCChhhcccccccceehhhhhH
Confidence 799999999999999986 677999999999999999998876543 23334443333321 1 22589999999999
Q ss_pred cCcccHHHHHHHHhcccCCCcEE
Q 027517 117 RNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 117 ~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
||++++..+++++++.|+|||+|
T Consensus 77 ~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=132.14 Aligned_cols=138 Identities=14% Similarity=0.061 Sum_probs=104.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+ .++.+...|+...+. +++||+|++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEE
Confidence 34559999999999999999865 5699999999999999988765433 367888888877554 468999999
Q ss_pred cccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCH
Q 027517 113 GYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190 (222)
Q Consensus 113 ~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (222)
..++++++ +...+++++.++|+|||++++............ ......+++
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------------------~p~~~~~~~ 242 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------------------MPFSFTFKE 242 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------------------CCCCcccCH
Confidence 99999885 568899999999999999777554332210000 000124688
Q ss_pred HHHHHHHHHcCCeEEEEe
Q 027517 191 KDLEKLALEIGFSRAKHY 208 (222)
Q Consensus 191 ~~~~~~l~~~Gf~~~~~~ 208 (222)
.++.+.++ +|++++..
T Consensus 243 ~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 243 GELKDYYQ--DWEIVKYN 258 (287)
T ss_pred HHHHHHhC--CCEEEEEe
Confidence 99999985 59998864
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-18 Score=126.09 Aligned_cols=167 Identities=20% Similarity=0.262 Sum_probs=117.6
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSD 104 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~ 104 (222)
+.......++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++..... .++.+...|..+.+ ...
T Consensus 40 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~ 112 (233)
T PRK05134 40 IREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESG----LKIDYRQTTAEELAAEHP 112 (233)
T ss_pred HHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcC----CceEEEecCHHHhhhhcC
Confidence 334444557889999999999999888765 4589999999999999988764332 25677777777654 234
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhH
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 184 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (222)
++||+|++..++++.+++..+++.+.++|+|||.+++..+........ .............. .....+
T Consensus 113 ~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~---~~~~~~~~~~~~~~---------~~~~~~ 180 (233)
T PRK05134 113 GQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYL---LAIVGAEYVLRMLP---------KGTHDY 180 (233)
T ss_pred CCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHH---HHHhhHHHHhhhcC---------cccCch
Confidence 689999999999999999999999999999999999886653221111 01000000000000 001123
Q ss_pred hhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 185 REFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 185 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.++++++++.++++++||++++.....
T Consensus 181 ~~~~~~~~~~~~l~~~Gf~~v~~~~~~ 207 (233)
T PRK05134 181 KKFIKPSELAAWLRQAGLEVQDITGLH 207 (233)
T ss_pred hhcCCHHHHHHHHHHCCCeEeeeeeEE
Confidence 457799999999999999999876443
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-18 Score=127.08 Aligned_cols=169 Identities=20% Similarity=0.249 Sum_probs=114.8
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
.-+|.+ +...+..-.+++|||||||+|.++..++.. ++ ..|+|+|.++......+--..-.+.. ..+......++
T Consensus 101 d~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~-GA-~~ViGiDP~~lf~~QF~~i~~~lg~~--~~~~~lplgvE 175 (315)
T PF08003_consen 101 DWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGR-GA-KSVIGIDPSPLFYLQFEAIKHFLGQD--PPVFELPLGVE 175 (315)
T ss_pred cchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhc-CC-CEEEEECCChHHHHHHHHHHHHhCCC--ccEEEcCcchh
Confidence 344533 445554456889999999999999999977 33 37999999887665533221111111 23445556777
Q ss_pred CcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHH
Q 027517 99 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQ 178 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (222)
+++. .+.||+|+|.++|+|..++...|+.+++.|+|||.|++.+..-+....... .+. ..|.
T Consensus 176 ~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L----------~P~-------~rYa 237 (315)
T PF08003_consen 176 DLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVL----------VPE-------DRYA 237 (315)
T ss_pred hccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEE----------ccC-------Cccc
Confidence 7776 578999999999999999999999999999999999987665332211000 000 0011
Q ss_pred HhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 179 YLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.+. +.--..|...+..+|+++||+.+++....
T Consensus 238 ~m~-nv~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 238 KMR-NVWFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred CCC-ceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 010 11124589999999999999999876554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-18 Score=119.61 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=103.6
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
+.+.+...++.++||+|||.|+.+..|+++ +..|+++|.|+.+++.+++...... -.+...+.|+.+..++ +
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~~-~ 93 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDFP-E 93 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-T
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhcccc-C
Confidence 444455556779999999999999999976 7799999999999999887665433 3588899999887765 6
Q ss_pred ceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 106 FFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
.||+|++..++++++ ..+.+++.+.+.++|||++++........ +.... .
T Consensus 94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d-~p~~~---------------------------~ 145 (192)
T PF03848_consen 94 EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD-YPCPS---------------------------P 145 (192)
T ss_dssp TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS-S--SS----------------------------
T ss_pred CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC-CCCCC---------------------------C
Confidence 799999988888884 46789999999999999988865543221 11000 0
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
....+.+.|+.+.+. ||+++...+..
T Consensus 146 ~~f~~~~~EL~~~y~--dW~il~y~E~~ 171 (192)
T PF03848_consen 146 FPFLLKPGELREYYA--DWEILKYNEDV 171 (192)
T ss_dssp -S--B-TTHHHHHTT--TSEEEEEEEEE
T ss_pred CCcccCHHHHHHHhC--CCeEEEEEccc
Confidence 012356678888884 89998755443
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=124.91 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=87.7
Q ss_pred CCCCeEEEecCCCChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhh-hhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL-VSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
.++++|+|||||.|.++ ..+++...++++++++|+++++++.|++.... .+ ..+++.|..+|+.+.....++||+|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g--L~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD--LSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC--ccCCcEEEECchhhcccccCCcCEE
Confidence 36789999999988654 44444445778999999999999999998843 22 2268999999998854334679999
Q ss_pred EEcccccCc--ccHHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNV--VDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~--~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++. +++++ +++.++++++++.|+|||.+++..
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999 88888 688999999999999999998864
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-17 Score=115.89 Aligned_cols=114 Identities=24% Similarity=0.303 Sum_probs=87.9
Q ss_pred hHHHHHHHHh---hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC
Q 027517 20 RIWKRMAVSW---SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 96 (222)
Q Consensus 20 ~~~~~~~~~~---~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 96 (222)
..|.+.+.+. ...-++.+|||+|||+|..+..++.. .+..+|+++|.++.+++.++++....+. .+++++++|
T Consensus 25 ~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~---~~i~~i~~d 100 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGL---NNVEIVNGR 100 (181)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCC---CCeEEEecc
Confidence 4455544332 22234789999999999999988866 4567899999999999999887765432 479999999
Q ss_pred CCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 97 ALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 97 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+.+++ ..++||+|++.. ++ +...+++.+++.|+|||.+++.
T Consensus 101 ~~~~~-~~~~fD~I~s~~-~~---~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 101 AEDFQ-HEEQFDVITSRA-LA---SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hhhcc-ccCCccEEEehh-hh---CHHHHHHHHHHhcCCCCEEEEE
Confidence 98864 346899999876 33 4566788889999999999875
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-17 Score=120.71 Aligned_cols=160 Identities=22% Similarity=0.265 Sum_probs=113.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~ 112 (222)
.+.+|||+|||+|.++..+++. ..+++++|+++.+++.++++...... .++.+...|+.+.+.. .++||+|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPL---LKIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhcCCCCCccEEEe
Confidence 4679999999999999888765 34799999999999999887654321 2578888888776543 368999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
..++++..++..+++.+.+.|+|||.+++.......... ............... ........+++..+
T Consensus 119 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 186 (224)
T TIGR01983 119 MEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSY---LLAIVGAEYILRIVP---------KGTHDWEKFIKPSE 186 (224)
T ss_pred hhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHH---HHHHHhhhhhhhcCC---------CCcCChhhcCCHHH
Confidence 999999999999999999999999999887665332111 111110000000000 00011234668899
Q ss_pred HHHHHHHcCCeEEEEeeec
Q 027517 193 LEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~~ 211 (222)
+.++++++||++++.....
T Consensus 187 l~~~l~~~G~~i~~~~~~~ 205 (224)
T TIGR01983 187 LTSWLESAGLRVKDVKGLV 205 (224)
T ss_pred HHHHHHHcCCeeeeeeeEE
Confidence 9999999999998876543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-17 Score=118.58 Aligned_cols=143 Identities=21% Similarity=0.144 Sum_probs=100.1
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----CCCC
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSD 104 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~ 104 (222)
.+...++.+|||+|||+|.++..+++..+ .++|+++|+++.+++...++.... .++.++.+|+... +++
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l~- 139 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHVV- 139 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhcc-
Confidence 36778899999999999999999998864 568999999999998776664322 4889999998752 122
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhH
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 184 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (222)
++||+|++.... ......++++++++|||||.++++-...... +... .
T Consensus 140 ~~~D~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d-~~~~----------------------------~- 187 (226)
T PRK04266 140 EKVDVIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLAIKARSID-VTKD----------------------------P- 187 (226)
T ss_pred ccCCEEEECCCC--hhHHHHHHHHHHHhcCCCcEEEEEEeccccc-CcCC----------------------------H-
Confidence 469999964321 1122456899999999999999852221100 0000 0
Q ss_pred hhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 185 REFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 185 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
.+. . ++..+.++++||++++..+...
T Consensus 188 ~~~-~-~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 188 KEI-F-KEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred HHH-H-HHHHHHHHHcCCeEEEEEcCCC
Confidence 001 1 3445999999999999887653
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=112.66 Aligned_cols=96 Identities=33% Similarity=0.606 Sum_probs=78.6
Q ss_pred EEEecCCCChhHHHHHHHh--CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc-c
Q 027517 38 VLDVCCGSGDLSFLLSEQV--GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG-Y 114 (222)
Q Consensus 38 vLdiG~G~G~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~-~ 114 (222)
|||+|||+|..+..+.+.+ ++..+++++|+|+++++.++++....+ .++++.+.|+.+++...++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~----~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG----PKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT----TTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC----CceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999886 233699999999999999999876533 48999999999987767799999995 4
Q ss_pred cccCcc--cHHHHHHHHhcccCCCc
Q 027517 115 GLRNVV--DKRKALEESFRVLKPGS 137 (222)
Q Consensus 115 ~l~~~~--~~~~~l~~~~~~l~~gG 137 (222)
+++|++ +...+++++.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 488885 46889999999999998
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-17 Score=113.76 Aligned_cols=143 Identities=21% Similarity=0.306 Sum_probs=103.1
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCcee
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 108 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (222)
.++...-.++||+|||.|.++..|+... .+++++|+++.+++.++++.... ++|++.+.|+.+. .|.++||
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~-~P~~~FD 108 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL-----PHVEWIQADVPEF-WPEGRFD 108 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCC-CCCCCee
Confidence 4566666799999999999999999773 48999999999999999998654 5899999999875 3568899
Q ss_pred EEEEcccccCccc---HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 109 AITMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 109 ~v~~~~~l~~~~~---~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
+|+++.+++++.+ ...+++.+...|+|||.+++..... .... .+.
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-------~~c~-------------------------~wg 156 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD-------ANCR-------------------------RWG 156 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-------HHHH-------------------------HTT
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-------Cccc-------------------------ccC
Confidence 9999999999964 5678999999999999999976531 1111 112
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeecCC
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
+.+..+.+.++|++. |..++.....++
T Consensus 157 h~~ga~tv~~~~~~~-~~~~~~~~~~~~ 183 (201)
T PF05401_consen 157 HAAGAETVLEMLQEH-LTEVERVECRGG 183 (201)
T ss_dssp -S--HHHHHHHHHHH-SEEEEEEEEE-S
T ss_pred cccchHHHHHHHHHH-hhheeEEEEcCC
Confidence 345677888888877 777776666554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=126.04 Aligned_cols=186 Identities=11% Similarity=0.058 Sum_probs=118.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCCCCC----ce
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSDC----FF 107 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~----~~ 107 (222)
+++.+|||+|||+|..+..+++.+....+|+++|+|++|++.+.+++....+. .++..+++|+.+ .+.+.. ..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~--~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ--LEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC--ceEEEEEEcccchhhhhcccccCCe
Confidence 45679999999999999999988643568999999999999999886542211 246678899876 333322 23
Q ss_pred eEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCc-hhhH----------H--------HHHHhh-----
Q 027517 108 DAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQP-FTTA----------I--------QEWMID----- 161 (222)
Q Consensus 108 D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~-~~~~----------~--------~~~~~~----- 161 (222)
.++++..++++++ +...+++++++.|+|||.+++..-...... .... + .+.+..
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~~~aY~d~~g~t~~F~~N~L~~~n~~l~~~f~~~ 219 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAAYNDAAGVTAAFNLNLLRRLNRELGGDFDPD 219 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHhhcCchhhHHHHHHHHHHHHHHHhccCCChH
Confidence 4555566777775 467899999999999999987432221111 0000 0 000000
Q ss_pred -----ccccccc----cc----------CC----hhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeE
Q 027517 162 -----NVVVPVA----SG----------YG----LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNL 218 (222)
Q Consensus 162 -----~~~~~~~----~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~ 218 (222)
....+.. .. .. .....+.+.....+.|+.++++.+++++||++++.+..+.+.++++
T Consensus 220 ~~~~~~~~~~~~~~ie~~l~~~~~~~v~~~~~~~~~~~ge~ih~e~S~ky~~~~~~~~l~~aGf~~~~~~~d~~~~~~~~ 299 (301)
T TIGR03438 220 AFRHRAFYNEERSRIEMHLVSRRDQTVRLAGLTVRFAAGETIHTENSYKFSLERFAALAAAAGLRPEQVWTDPNDWFSLH 299 (301)
T ss_pred HcEEEEEEcCCcCeEEEEEEeCCCEEEEECCeEEEecCCCEEeEEEecCCCHHHHHHHHHHCCCceeEEEECCCCCeEEE
Confidence 0000000 00 00 0000111111233779999999999999999999999999888877
Q ss_pred ee
Q 027517 219 VA 220 (222)
Q Consensus 219 ~~ 220 (222)
++
T Consensus 300 l~ 301 (301)
T TIGR03438 300 LL 301 (301)
T ss_pred eC
Confidence 53
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=126.83 Aligned_cols=164 Identities=16% Similarity=0.123 Sum_probs=103.8
Q ss_pred HHHHHHhhCC---CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh--cCCCeeEEeCCC
Q 027517 23 KRMAVSWSGA---KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDA 97 (222)
Q Consensus 23 ~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~d~ 97 (222)
.+.++.++.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....... ...++.+...|+
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 3445555532 25679999999999999999965 468999999999999999886532110 013578888887
Q ss_pred CCcCCCCCceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhH
Q 027517 98 LDLPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAE 175 (222)
Q Consensus 98 ~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (222)
.++ +++||+|+|..+++|+++. ..+++.+.+ +.++|.+ +... +.......+. ...+... +...
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~li-Is~~--p~~~~~~~l~-~~g~~~~----g~~~--- 271 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLI-ISFA--PKTLYYDILK-RIGELFP----GPSK--- 271 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEE-EEeC--CcchHHHHHH-HHHhhcC----CCCc---
Confidence 654 4679999999999988653 456676665 4555554 4321 1111111111 1111000 0000
Q ss_pred HHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 176 EYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
.....++++++++++++++||++......
T Consensus 272 ------~~r~y~~s~eel~~lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 272 ------ATRAYLHAEADVERALKKAGWKVARREMT 300 (315)
T ss_pred ------CceeeeCCHHHHHHHHHHCCCEEEEEEEe
Confidence 00012458999999999999998765433
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=136.39 Aligned_cols=112 Identities=26% Similarity=0.428 Sum_probs=92.6
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CCCCce
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFF 107 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~ 107 (222)
....++.+|||+|||+|..+..+++.. ++.+++|+|+|+.+++.++++..... .++.++++|+.+++ +++++|
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g----~~ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG----RSWNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC----CCeEEEEcchHhCccccCCCCE
Confidence 344467899999999999999888875 67899999999999999988754322 46788899988876 667889
Q ss_pred eEEEEcccccCc-------------ccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 108 DAITMGYGLRNV-------------VDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 108 D~v~~~~~l~~~-------------~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
|+|+++.++|++ .+...++++++++|||||.+++.+...
T Consensus 489 DvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 489 DTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred EEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 999999988865 245789999999999999999987543
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.6e-17 Score=115.21 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=107.1
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
..+..++..+...++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.++++...... .++++..+|...
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~---~~i~~~~~d~~~- 92 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC---GNIDIIPGEAPI- 92 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC---CCeEEEecCchh-
Confidence 344455666677788899999999999999999874 667999999999999999988755432 468888888753
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHh
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYL 180 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (222)
+. .++||+|++.....+ ...+++.+.+.|+|||.+++.....
T Consensus 93 ~~-~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~---------------------------------- 134 (187)
T PRK08287 93 EL-PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL---------------------------------- 134 (187)
T ss_pred hc-CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH----------------------------------
Confidence 23 357999999776543 4668899999999999998753221
Q ss_pred HHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 181 KSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
-+..++.++++++||+.++.....
T Consensus 135 -------~~~~~~~~~l~~~g~~~~~~~~~~ 158 (187)
T PRK08287 135 -------ENLHSALAHLEKCGVSELDCVQLQ 158 (187)
T ss_pred -------hhHHHHHHHHHHCCCCcceEEEEE
Confidence 134577789999999877654443
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-17 Score=118.80 Aligned_cols=157 Identities=23% Similarity=0.349 Sum_probs=105.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~v 110 (222)
+++.+|||+|||+|.++..+++.. +..++++|+++++++.++++ ++++++.|+.+ + ++++++||+|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhcccccCCCCcCEE
Confidence 466799999999999998887653 45789999999999888643 56788888765 3 3556789999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCH
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (222)
+++.+++|++++..+++++.+.++ ..++..+. ..........+.... .+..... .+.+....+.++++.
T Consensus 80 i~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~---~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~s~ 148 (194)
T TIGR02081 80 ILSQTLQATRNPEEILDEMLRVGR---HAIVSFPN---FGYWRVRWSILTKGR-MPVTGEL----PYDWYNTPNIHFCTI 148 (194)
T ss_pred EEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCC---hhHHHHHHHHHhCCc-cccCCCC----CccccCCCCcccCcH
Confidence 999999999999999999887654 44443221 111111111111100 1111000 011112223457899
Q ss_pred HHHHHHHHHcCCeEEEEeeecC
Q 027517 191 KDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 191 ~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
+++.++++++||++++...+..
T Consensus 149 ~~~~~ll~~~Gf~v~~~~~~~~ 170 (194)
T TIGR02081 149 ADFEDLCGELNLRILDRAAFDV 170 (194)
T ss_pred HHHHHHHHHCCCEEEEEEEecc
Confidence 9999999999999998776643
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-16 Score=111.97 Aligned_cols=134 Identities=19% Similarity=0.165 Sum_probs=103.7
Q ss_pred HhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCce
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 107 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (222)
+.+...++.+|||+|||+|..+..+++.. .+++++|+++++++.++++....+ .++++..+|+.+.. .++|
T Consensus 13 ~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~~~f 83 (179)
T TIGR00537 13 ANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--RGKF 83 (179)
T ss_pred HHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--CCcc
Confidence 33444566799999999999999998762 289999999999999999875433 36788888987643 3589
Q ss_pred eEEEEcccccCccc---------------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccccc
Q 027517 108 DAITMGYGLRNVVD---------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVP 166 (222)
Q Consensus 108 D~v~~~~~l~~~~~---------------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (222)
|+|+++..+++.++ ...+++++.++|+|||.+++......
T Consensus 84 D~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------- 144 (179)
T TIGR00537 84 DVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------- 144 (179)
T ss_pred cEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-------------------
Confidence 99999988876643 34679999999999999988754321
Q ss_pred ccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 167 VASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
...++.+.+++.||......+..
T Consensus 145 ----------------------~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 145 ----------------------GEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred ----------------------ChHHHHHHHHhCCCeEEEEEEee
Confidence 24577899999999887666543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=118.58 Aligned_cols=144 Identities=18% Similarity=0.135 Sum_probs=98.5
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---CCCCC
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDC 105 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~ 105 (222)
.+.+.++.+|||+|||+|.++.++++.+++...|+++|+++.+++...+..... +|+.++..|+... ....+
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-----~NI~~I~~Da~~p~~y~~~~~ 201 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-----PNIVPIIEDARYPQKYRMLVP 201 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCCEEEECCccChhhhhcccC
Confidence 345688999999999999999999999876779999999987553333322111 5889999998642 12235
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
++|+|++... ...+...++.++.++|||||.+++. +............
T Consensus 202 ~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~-ika~~id~g~~pe----------------------------- 249 (293)
T PTZ00146 202 MVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS-IKANCIDSTAKPE----------------------------- 249 (293)
T ss_pred CCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE-EeccccccCCCHH-----------------------------
Confidence 7999998774 2223345667899999999999883 2221111100000
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
..++ +|+ +.|+++||++++..+..
T Consensus 250 ~~f~-~ev-~~L~~~GF~~~e~v~L~ 273 (293)
T PTZ00146 250 VVFA-SEV-QKLKKEGLKPKEQLTLE 273 (293)
T ss_pred HHHH-HHH-HHHHHcCCceEEEEecC
Confidence 1122 345 88899999998887765
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=134.54 Aligned_cols=149 Identities=21% Similarity=0.215 Sum_probs=110.7
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC--cC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LP 101 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~ 101 (222)
..++..+...++.+|||+|||+|..+..+++. ..+++++|+++.+++.+++.... .+++.+++.|+.+ ++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~ 98 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLN 98 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccC
Confidence 45556666566779999999999999999976 34899999999999887653211 1578999999864 45
Q ss_pred CCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 102 FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
+++++||+|++..+++|+++ ...++++++++|||||++++.+............
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~------------------------ 154 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRK------------------------ 154 (475)
T ss_pred CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccccc------------------------
Confidence 66778999999999999976 5789999999999999999987543221000000
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEE
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAK 206 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 206 (222)
.......+...|.+++.++||....
T Consensus 155 --~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 155 --NNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred --CCCCeecChHHHHHHHHHheeccCC
Confidence 0001234577899999999988764
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=118.17 Aligned_cols=173 Identities=19% Similarity=0.248 Sum_probs=120.9
Q ss_pred chhhHHHHHHHHhhCCCCCC--eEEEecCCCChhHHHHHHHhCCC--CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeE
Q 027517 17 GQHRIWKRMAVSWSGAKTGD--NVLDVCCGSGDLSFLLSEQVGSQ--GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92 (222)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (222)
..+++..+..-++....... +|||+|||.|.....+.+.. ++ ..++++|.|+.+++..+++..... .++..
T Consensus 52 kdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e----~~~~a 126 (264)
T KOG2361|consen 52 KDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDE----SRVEA 126 (264)
T ss_pred chhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccch----hhhcc
Confidence 33444444444444443333 89999999999999998873 44 689999999999999998875544 46666
Q ss_pred EeCCCCCc----CCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHH-HHhhcccc
Q 027517 93 VEGDALDL----PFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQE-WMIDNVVV 165 (222)
Q Consensus 93 ~~~d~~~~----~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~ 165 (222)
.+.|+... +...+++|+|++.++|..++ ...++++++.++|||||.+++-++...+.....+... .+.++..+
T Consensus 127 fv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYV 206 (264)
T KOG2361|consen 127 FVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYV 206 (264)
T ss_pred cceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEE
Confidence 66776642 34467899999999999884 4688999999999999999999988755332222111 01111111
Q ss_pred cccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEE
Q 027517 166 PVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKH 207 (222)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 207 (222)
.-.+ ....+++.+++.+++.++||..++.
T Consensus 207 RgDG-------------T~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 207 RGDG-------------TRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred ccCC-------------ceeeeccHHHHHHHHHhcccchhcc
Confidence 1111 1124789999999999999997653
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-17 Score=128.12 Aligned_cols=112 Identities=27% Similarity=0.272 Sum_probs=93.1
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+.+.+...++.+|||+|||+|.++..+++.. +.+|+++|+|+++++.++++... .++++...|..++ +
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l---~ 226 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL---N 226 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---C
Confidence 34556677888999999999999999998874 56999999999999999988632 2477788887665 3
Q ss_pred CceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 105 CFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
++||.|++..+++|+. +...+++++.++|||||.+++.++..+
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 6799999999999984 457899999999999999999877654
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-17 Score=117.16 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=91.0
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+...+.+.+...++.+|||+|||+|..+..+++..++.++++++|+++++++.+++++...+.. .++++..+|..+..
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~--~~v~~~~~d~~~~~ 137 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW--GVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEECCcccCC
Confidence 3455666667778889999999999999999988655679999999999999999887654321 35899999987744
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
....+||.|++..++.+++ +++.+.|+|||++++..
T Consensus 138 ~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 EKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 3456899999999887765 35778899999997753
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=115.24 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=87.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+|||+|||+|..+..+++.. ++.+++|+|+|+++++.++++. +++.+.++|+.+ ++++++||+|+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~ 110 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVL 110 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEE
Confidence 3566799999999999999998874 5679999999999999998764 467788889887 67778999999
Q ss_pred EcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 112 MGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 112 ~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
++.+++|++ +...+++++.+++ ++.+++.+...+.
T Consensus 111 ~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 111 TKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred ECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 999999985 3578899999987 5688888775433
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=117.38 Aligned_cols=156 Identities=22% Similarity=0.258 Sum_probs=104.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++....+.. .++.+...|+.. ..++||+|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~i~~~~~d~~~---~~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLA--GNITFEVGDLES---LLGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCc--cCcEEEEcCchh---ccCCcCEEEE
Confidence 56779999999999999999865 357999999999999999887543321 478888888433 3467999999
Q ss_pred cccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCH
Q 027517 113 GYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190 (222)
Q Consensus 113 ~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (222)
..+++|++ +...+++++.+.+++++.+.+ .. ........ .... ...... . .......++.
T Consensus 134 ~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~--~~--~~~~~~~~-~~l~-~~~~~~-~-----------~~~~~~~~~~ 195 (230)
T PRK07580 134 LDVLIHYPQEDAARMLAHLASLTRGSLIFTF--AP--YTPLLALL-HWIG-GLFPGP-S-----------RTTRIYPHRE 195 (230)
T ss_pred cchhhcCCHHHHHHHHHHHHhhcCCeEEEEE--CC--ccHHHHHH-HHhc-cccCCc-c-----------CCCCccccCH
Confidence 99998876 446788888887654433322 11 11111111 1110 000000 0 0011235688
Q ss_pred HHHHHHHHHcCCeEEEEeeecCCe
Q 027517 191 KDLEKLALEIGFSRAKHYELSGGL 214 (222)
Q Consensus 191 ~~~~~~l~~~Gf~~~~~~~~~~~~ 214 (222)
.++.++++++||++.+......+.
T Consensus 196 ~~~~~~l~~~Gf~~~~~~~~~~~~ 219 (230)
T PRK07580 196 KGIRRALAAAGFKVVRTERISSGF 219 (230)
T ss_pred HHHHHHHHHCCCceEeeeeccchh
Confidence 999999999999999988776553
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-17 Score=116.36 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=86.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC-CCcC--CCCCceeEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLP--FSDCFFDAI 110 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~D~v 110 (222)
++.+|||+|||+|..+..+++.. +..+++++|+++++++.++++...... +++.++++|+ ..++ +++++||.|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL---TNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC---CCEEEEecCHHHHHHHHcCccccceE
Confidence 56799999999999999998875 567899999999999999988754332 5799999998 6554 556789999
Q ss_pred EEcccccCcc--------cHHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNVV--------DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~~--------~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++++...+.. ....+++++.++|+|||.+++..
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 9977543321 14678999999999999998864
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=105.93 Aligned_cols=115 Identities=26% Similarity=0.321 Sum_probs=90.1
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L 100 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~ 100 (222)
.+..+...+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....+. .++.+...|+.. .
T Consensus 7 ~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 7 VRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGV---SNIVIVEGDAPEAL 82 (124)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCC---CceEEEeccccccC
Confidence 34455566666677899999999999999999885 457999999999999999987755432 478888888764 2
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+...++||.|++..... ....+++.+.+.|+|||.+++..
T Consensus 83 ~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhhcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 22235799999977544 34688999999999999998764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-16 Score=111.90 Aligned_cols=115 Identities=25% Similarity=0.433 Sum_probs=91.2
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P 101 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~ 101 (222)
+...+..+...++.+|||+|||+|.++..+++..++..+++++|+++++++.++++....+. ..++.++.+|..+. +
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~--~~~v~~~~~d~~~~l~ 106 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV--LNNIVLIKGEAPEILF 106 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCCeEEEEechhhhHh
Confidence 34445666778889999999999999999888765667999999999999999988765431 15788988888763 2
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
...++||.|++.. ...++..+++.+.+.|+|||++++.
T Consensus 107 ~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 107 TINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred hcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 2235799999865 2346688999999999999999863
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.1e-17 Score=121.34 Aligned_cols=110 Identities=19% Similarity=0.190 Sum_probs=85.3
Q ss_pred CCCeEEEecCCCChh----HHHHHHHhCC----CCcEEEEeCChhHHHHHhcchhhh-----------------------
Q 027517 34 TGDNVLDVCCGSGDL----SFLLSEQVGS----QGKVIGLDFSKNQLSMASSRQDLV----------------------- 82 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~----~~~l~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~----------------------- 82 (222)
++.+|+|+|||+|.. +..+++..+. +.+++|+|+|+.+++.|++.....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 456999999999974 3344444321 468999999999999999864210
Q ss_pred -hhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEe
Q 027517 83 -SKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 83 -~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
......++.+.+.|+.+.+.+.++||+|+|.++++|++ +..++++++++.|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 00112478999999998776667899999999999996 45689999999999999999854
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-16 Score=112.34 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=85.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh---------hhhcCCCeeEEeCCCCCcCCC
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV---------SKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~d~~~~~~~ 103 (222)
.++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+.+..... ......++++.++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 46679999999999999999965 779999999999999853321100 000124789999999887532
Q ss_pred -CCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 -DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 -~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.++||.|+-..+++|++. ....++.+.++|||||++++..+..
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 357999999888888853 5678999999999999877776654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=115.45 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=91.2
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.....+++.+...++.+|||+|||+|..+..+++..++.++++++|+++++++.+++++...+. .++.+..+|....
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~---~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY---DNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCeEEEECCcccC
Confidence 3345566677778899999999999999999998866667999999999999999998865543 5799999998765
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
..+..+||+|++.....+++ +.+.+.|||||++++.
T Consensus 140 ~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence 44457899999988766543 3466689999998875
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=111.76 Aligned_cols=116 Identities=28% Similarity=0.406 Sum_probs=91.2
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
+.+.+.+...+..+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....+. .++++...|..+.. +
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~~-~ 95 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEAL-P 95 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTTC-C
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCc---cccccccccccccc-c
Confidence 455555555477899999999999999999874 666799999999999999999876654 24889999987633 3
Q ss_pred CCceeEEEEcccccCccc-----HHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+++||+|+++-.++.-.+ ...+++...++|+|||.++++..
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 578999999998776543 57889999999999999977543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-16 Score=113.45 Aligned_cols=112 Identities=22% Similarity=0.208 Sum_probs=90.1
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
....+++.+...++.+|||+|||+|..+..+++..++.++|+++|+++++++.+++++...+. .+++++.+|..+..
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~---~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL---DNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC---CCeEEEECCcccCC
Confidence 335566677788899999999999999999998865556799999999999999998866543 57999999987654
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
....+||+|++.....+++ +.+.+.|+|||++++.
T Consensus 142 ~~~~~fD~Ii~~~~~~~~~------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKIP------EALIDQLKEGGILVMP 176 (215)
T ss_pred cccCCCCEEEEcCCccccc------HHHHHhcCcCcEEEEE
Confidence 3346899999987665543 4577889999999875
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-15 Score=113.77 Aligned_cols=144 Identities=22% Similarity=0.312 Sum_probs=106.9
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..++..+. ..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....+. .++.+.++|+.+ +++
T Consensus 78 ~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~~-~~~ 151 (251)
T TIGR03534 78 EAALERLK-KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL---DNVTFLQSDWFE-PLP 151 (251)
T ss_pred HHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhc-cCc
Confidence 33444443 344689999999999999999875 567999999999999999988765432 468999999876 344
Q ss_pred CCceeEEEEcccccCccc--------------------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHH
Q 027517 104 DCFFDAITMGYGLRNVVD--------------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQE 157 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~--------------------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~ 157 (222)
.++||+|+++..+....+ ...+++++.+.|+|||.+++...
T Consensus 152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------- 218 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------- 218 (251)
T ss_pred CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-------------
Confidence 578999999765442111 13678899999999999987421
Q ss_pred HHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCee
Q 027517 158 WMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 215 (222)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 215 (222)
....+++.++++++||+.+++.....+..
T Consensus 219 -----------------------------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~ 247 (251)
T TIGR03534 219 -----------------------------YDQGEAVRALFEAAGFADVETRKDLAGKD 247 (251)
T ss_pred -----------------------------ccHHHHHHHHHHhCCCCceEEEeCCCCCc
Confidence 11245788999999999888776655543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-15 Score=107.74 Aligned_cols=150 Identities=23% Similarity=0.283 Sum_probs=106.7
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCc
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 106 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (222)
.+.+...++.+|||+|||+|..+..+++. +.+++++|+++++++.++++........ .++.+...|+.+. +.+.+
T Consensus 16 ~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~~~~~~~d~~~~-~~~~~ 90 (188)
T PRK14968 16 AENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRN-NGVEVIRSDLFEP-FRGDK 90 (188)
T ss_pred HHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCC-cceEEEecccccc-ccccC
Confidence 33444467789999999999999999876 4689999999999999988765433210 1278888887663 34457
Q ss_pred eeEEEEcccccCc---------------------ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccc
Q 027517 107 FDAITMGYGLRNV---------------------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVV 165 (222)
Q Consensus 107 ~D~v~~~~~l~~~---------------------~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 165 (222)
||+|+++..+... .....+++++.++|+|||.+++....
T Consensus 91 ~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~-------------------- 150 (188)
T PRK14968 91 FDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS-------------------- 150 (188)
T ss_pred ceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc--------------------
Confidence 9999987765431 11356799999999999998775322
Q ss_pred cccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEee--ecCCeeeeEeeeC
Q 027517 166 PVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE--LSGGLMGNLVATR 222 (222)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~~~~~~~~~~k 222 (222)
....+++.++++++||++..... +.......++.+|
T Consensus 151 ---------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 151 ---------------------LTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred ---------------------cCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 11335778899999998776543 3444555555554
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-15 Score=117.03 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=107.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~ 111 (222)
+++.+|||+|||+|..+..+++.. ++.+++++|+|+++++.++++....+ .++.++++|+.+...+ .++||+|+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~e~~l~~~~~FDLIV 324 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWFDTDMPSEGKWDIIV 324 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchhccccccCCCccEEE
Confidence 345699999999999999988773 56799999999999999999876543 3789999998664322 35799999
Q ss_pred EcccccCcc---------------------c----HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccccc
Q 027517 112 MGYGLRNVV---------------------D----KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVP 166 (222)
Q Consensus 112 ~~~~l~~~~---------------------~----~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (222)
++-...... + ..++++.+.+.|+|||.+++. ...
T Consensus 325 SNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE-iG~-------------------- 383 (423)
T PRK14966 325 SNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE-HGF-------------------- 383 (423)
T ss_pred ECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE-ECc--------------------
Confidence 977642110 0 236677777899999998653 211
Q ss_pred ccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeee
Q 027517 167 VASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 221 (222)
-..+.+.+++++.||..+++.....|...+++++
T Consensus 384 ---------------------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 384 ---------------------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred ---------------------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 1346788999999999999888888877777665
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.6e-16 Score=120.57 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=93.2
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
.+.+++.++...+.+|||+|||+|..+..+++.. |..+++++|.|+.+++.++++..........++++...|..+. .
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~ 294 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V 294 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C
Confidence 4556676665556799999999999999999884 7789999999999999999887654322123678888887653 2
Q ss_pred CCCceeEEEEcccccCcc-----cHHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVV-----DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~-----~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+..+||+|+|+..+|... ...++++..+++|+|||.++++.
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 345799999998877542 23578999999999999998874
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-15 Score=113.25 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=112.0
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+...+.......++.+|||+|||+|..+..++... +..+++++|+++.+++.++++.... ...++.+..+|+.+.
T Consensus 96 l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~---~~~~i~~~~~d~~~~- 170 (275)
T PRK09328 96 LVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHG---LGARVEFLQGDWFEP- 170 (275)
T ss_pred HHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhC---CCCcEEEEEccccCc-
Confidence 33444434445567799999999999999999885 5679999999999999999887511 125789999998653
Q ss_pred CCCCceeEEEEcccccCc--------------------------ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHH
Q 027517 102 FSDCFFDAITMGYGLRNV--------------------------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 155 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~--------------------------~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~ 155 (222)
.+.++||+|+++...... .....+++++.+.|+|||.+++.. .
T Consensus 171 ~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g---------- 239 (275)
T PRK09328 171 LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G---------- 239 (275)
T ss_pred CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C----------
Confidence 234689999997553211 113567888889999999998732 1
Q ss_pred HHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 156 QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
....+++.+++++.||..++......+...+++++|
T Consensus 240 -------------------------------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 240 -------------------------------YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred -------------------------------chHHHHHHHHHHhCCCceeEEecCCCCCceEEEEEC
Confidence 012346888999999998887766667666766654
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-15 Score=102.64 Aligned_cols=116 Identities=26% Similarity=0.383 Sum_probs=97.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+..+...+..+...|+.+++|+|||+|..+..++.. .+.++++++|-++++++..+++..+.+. +|++++.+++.+
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~---~n~~vv~g~Ap~ 95 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGV---DNLEVVEGDAPE 95 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCC---CcEEEEeccchH
Confidence 445556677788899999999999999999999944 7889999999999999999999988774 799999999987
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.-....++|.|+.... . +.+.+++.+...|||||++++..
T Consensus 96 ~L~~~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 96 ALPDLPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred hhcCCCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEEEe
Confidence 4222237999999887 3 45788999999999999998753
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.1e-16 Score=116.96 Aligned_cols=98 Identities=29% Similarity=0.439 Sum_probs=81.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCC--CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQ--GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
+..+|||+|||+|.++..+++.++.. ..++|+|+|+.+++.+.++. +++.+.++|+.++|+++++||+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--------~~~~~~~~d~~~lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--------PQVTFCVASSHRLPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--------CCCeEEEeecccCCCcCCceeEEE
Confidence 45689999999999999998875322 37999999999999998764 578899999999888888999999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
+.+.. ..++++.++|||||.+++..+..
T Consensus 157 ~~~~~-------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 157 RIYAP-------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EecCC-------CCHHHHHhhccCCCEEEEEeCCC
Confidence 86542 23578999999999999887554
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=112.77 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=106.1
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+......++..+|+|||+|.|.++..+++.+ |+.+++.+|. |+.++.+++. ++++++.+|+. .++|.
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~~---------~rv~~~~gd~f-~~~P~ 158 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKEA---------DRVEFVPGDFF-DPLPV 158 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHHT---------TTEEEEES-TT-TCCSS
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhccccc---------cccccccccHH-hhhcc
Confidence 34455566777899999999999999999995 7889999998 8888888771 69999999998 45554
Q ss_pred CceeEEEEcccccCccc--HHHHHHHHhcccCCC--cEEEEEecCCCCCchhhHHH---HHHhhcccccccccCChhHHH
Q 027517 105 CFFDAITMGYGLRNVVD--KRKALEESFRVLKPG--SRISVLDFNKSTQPFTTAIQ---EWMIDNVVVPVASGYGLAEEY 177 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~g--G~l~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 177 (222)
+|++++.+++|++++ ...+|+++++.|+|| |+|+|.+...++........ ... +.
T Consensus 159 --~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~----------------dl 220 (241)
T PF00891_consen 159 --ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALF----------------DL 220 (241)
T ss_dssp --ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHH----------------HH
T ss_pred --ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHH----------------HH
Confidence 999999999999965 578899999999999 99999998765544333222 111 12
Q ss_pred HHhHHhHhhcCCHHHHHHHHH
Q 027517 178 QYLKSSIREFLTGKDLEKLAL 198 (222)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~ 198 (222)
.++.......+|.+||+++|+
T Consensus 221 ~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 221 NMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp HHHHHHSSS-EEHHHHHHHHH
T ss_pred HHHHhcCCCCcCHHHHHHHhC
Confidence 222222245678999998874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-15 Score=108.65 Aligned_cols=101 Identities=24% Similarity=0.299 Sum_probs=80.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--------CC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------FS 103 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~ 103 (222)
..++.+|||+|||+|.++..+++..++.+.|+++|+++. ... +++.++++|+.+.+ +.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~~~--------~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------DPI--------VGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------cCC--------CCcEEEecCCCChHHHHHHHHHhC
Confidence 467889999999999999999998766679999999881 111 47899999998853 45
Q ss_pred CCceeEEEEcccccCcccH-----------HHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 DCFFDAITMGYGLRNVVDK-----------RKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~-----------~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.++||+|++..+.+...++ ..+++.+.++|+|||.+++..+..
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 6789999998766554321 468999999999999999865543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-15 Score=112.43 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=110.4
Q ss_pred hHHHHHHHHhh-CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 20 RIWKRMAVSWS-GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 20 ~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
..+...++..+ ...+..+|||+|||+|..+..++... ++.+++++|+|+++++.++++....+.. .++.+.++|+.
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~--~~v~~~~~d~~ 175 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLE--HRVEFIQSNLF 175 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECchh
Confidence 33444444333 22333699999999999999999885 5679999999999999999987654431 35999999987
Q ss_pred CcCCCCCceeEEEEcccc-------------cCcc------------cHHHHHHHHhcccCCCcEEEEEecCCCCCchhh
Q 027517 99 DLPFSDCFFDAITMGYGL-------------RNVV------------DKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 153 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l-------------~~~~------------~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~ 153 (222)
+. .+..+||+|+++-.. .|-| ....++..+.++|+|||.+++....
T Consensus 176 ~~-~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-------- 246 (284)
T TIGR00536 176 EP-LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-------- 246 (284)
T ss_pred cc-CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc--------
Confidence 63 333479999997332 1211 2456788999999999998764211
Q ss_pred HHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHH-HcCCeEEEEeeecCCeeeeEeee
Q 027517 154 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLAL-EIGFSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gf~~~~~~~~~~~~~~~~~~~ 221 (222)
.....+.+++. ..||..+++.+...|...+++++
T Consensus 247 ----------------------------------~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 247 ----------------------------------WQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred ----------------------------------cHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 12245667777 46898888888877777766665
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-15 Score=102.16 Aligned_cols=146 Identities=21% Similarity=0.247 Sum_probs=109.7
Q ss_pred HHHHHHHHhhC---CCCC-CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC
Q 027517 21 IWKRMAVSWSG---AKTG-DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 96 (222)
Q Consensus 21 ~~~~~~~~~~~---~~~~-~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 96 (222)
+...++.+... ..+. .+|||+|||+|.+...|++. +-....+|+|+|+.+++.|+...++.+.+ ..|.+.+.|
T Consensus 50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~--n~I~f~q~D 126 (227)
T KOG1271|consen 50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFS--NEIRFQQLD 126 (227)
T ss_pred HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCC--cceeEEEee
Confidence 33445555443 3333 39999999999999999987 34446999999999999998887665542 349999999
Q ss_pred CCCcCCCCCceeEEEEcccccCc---cc-----HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccccccc
Q 027517 97 ALDLPFSDCFFDAITMGYGLRNV---VD-----KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVA 168 (222)
Q Consensus 97 ~~~~~~~~~~~D~v~~~~~l~~~---~~-----~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (222)
+.+..+..++||+|.=-..+..+ ++ +...+..+.+.|+|||+++|..-
T Consensus 127 I~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------ 182 (227)
T KOG1271|consen 127 ITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------ 182 (227)
T ss_pred ccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------
Confidence 99876666789999865554443 11 24567888999999999998632
Q ss_pred ccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 169 SGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.+|.+|+.+.++..||+.....+.+
T Consensus 183 ------------------N~T~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 183 ------------------NFTKDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred ------------------CccHHHHHHHHhcCCeEEEEeeccc
Confidence 3578899999999999987766554
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=116.75 Aligned_cols=118 Identities=27% Similarity=0.274 Sum_probs=92.8
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.....++......++.+|||+|||+|.++..++.. +.+++|+|+++.+++.++.++...+. .++.+.++|+.++
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~---~~i~~~~~D~~~l 242 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGI---EDFFVKRGDATKL 242 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCC---CCCeEEecchhcC
Confidence 34455566667788899999999999998776543 56899999999999999988765443 3578899999998
Q ss_pred CCCCCceeEEEEcccccCc--------cc-HHHHHHHHhcccCCCcEEEEEec
Q 027517 101 PFSDCFFDAITMGYGLRNV--------VD-KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~--------~~-~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+.+.++||+|+++..+... .+ ...+++++.++|+|||++++..+
T Consensus 243 ~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 243 PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 8766789999997654321 11 47889999999999999987643
|
This family is found exclusively in the Archaea. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-15 Score=107.62 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=84.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh---------hhhcCCCeeEEeCCCCCcC
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV---------SKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~d~~~~~ 101 (222)
...++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+....... ......++++.++|+.+++
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 3356679999999999999999964 779999999999999864321100 0001257899999999875
Q ss_pred CC-CCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FS-DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.. .+.||.|+-..++++++ .....++.+.++|+|||++++....
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 32 25799999888888885 3578899999999999975554433
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=109.96 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=86.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCceeE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDA 109 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~ 109 (222)
.+..+|||||||+|.++..+++.. +...++++|+++++++.++++....+. .++.++++|+.+++ ++++++|.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l---~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL---KNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC---CCEEEEccCHHHHHHhhCCCCceeE
Confidence 345699999999999999999884 678999999999999999888754432 58999999997643 34458999
Q ss_pred EEEcccccCccc--------HHHHHHHHhcccCCCcEEEEEe
Q 027517 110 ITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 110 v~~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|++++...+... ...+++.+.++|||||.+++..
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 999876544332 1578999999999999998865
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-15 Score=110.17 Aligned_cols=132 Identities=26% Similarity=0.335 Sum_probs=93.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|.++..+++. +. .+++++|+++.+++.++++....... .++.+..+ +.+||+|++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~~--~~~~~~~~--------~~~fD~Vva 185 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGVE--LNVYLPQG--------DLKADVIVA 185 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCCC--ceEEEccC--------CCCcCEEEE
Confidence 56789999999999988876654 33 36999999999999999887543210 12222211 126999998
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
+... .....++.++.++|||||.+++..+... ..++
T Consensus 186 ni~~---~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------------------~~~~ 221 (250)
T PRK00517 186 NILA---NPLLELAPDLARLLKPGGRLILSGILEE-----------------------------------------QADE 221 (250)
T ss_pred cCcH---HHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------------------hHHH
Confidence 7542 2346788999999999999998654321 2357
Q ss_pred HHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 193 LEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
+.+.+++.||+++..... +.|..++++|
T Consensus 222 v~~~l~~~Gf~~~~~~~~--~~W~~~~~~~ 249 (250)
T PRK00517 222 VLEAYEEAGFTLDEVLER--GEWVALVGKK 249 (250)
T ss_pred HHHHHHHCCCEEEEEEEe--CCEEEEEEEe
Confidence 789999999999887654 3455555554
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-14 Score=109.37 Aligned_cols=106 Identities=18% Similarity=0.244 Sum_probs=82.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|..+..+++.. ++.+++++|+|+.+++.++++....+.. .++.++++|+.+. .+.++||+|++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~--~~i~~~~~D~~~~-~~~~~fD~Iv~ 195 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLE--DRVTLIQSDLFAA-LPGRKYDLIVS 195 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECchhhc-cCCCCccEEEE
Confidence 345699999999999999999874 5679999999999999999987654422 4789999998652 34457999999
Q ss_pred cccccC-------------cc------------cHHHHHHHHhcccCCCcEEEEE
Q 027517 113 GYGLRN-------------VV------------DKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 113 ~~~l~~-------------~~------------~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+-.... -+ ....+++.+.+.|+|||++++.
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 743211 11 1256788899999999999763
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-15 Score=115.57 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=89.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
+.+++.+......+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..... ...+...|.... .
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l----~~~~~~~D~~~~--~ 258 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL----EGEVFASNVFSD--I 258 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCEEEEcccccc--c
Confidence 445555554455689999999999999999884 667899999999999999988765432 346677776552 2
Q ss_pred CCceeEEEEcccccCc-----ccHHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNV-----VDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.++||+|+++..+|+. .....+++++.+.|+|||.++++..
T Consensus 259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 4679999999998863 2357889999999999999988643
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-14 Score=104.87 Aligned_cols=109 Identities=22% Similarity=0.324 Sum_probs=82.9
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeE
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 109 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (222)
....++.+|||+|||+|.++..+++. + ..+++++|+++.+++.++++....+ .++.++..|+.+. .+.++||+
T Consensus 32 ~~~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~ 104 (223)
T PRK14967 32 EGLGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDV 104 (223)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeE
Confidence 34567789999999999999988865 2 2489999999999999998775433 2578888888763 34568999
Q ss_pred EEEcccccCccc---------------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 110 ITMGYGLRNVVD---------------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 110 v~~~~~l~~~~~---------------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|+++..+..-.. ...+++++.++|+|||++++....
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 999865432211 355788899999999999876444
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=102.09 Aligned_cols=176 Identities=16% Similarity=0.121 Sum_probs=122.8
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCe-eEEeCCCCCcCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGDALDLPF 102 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~ 102 (222)
..+.+.+.. .+.+|||||||||..+.++++.+ |.....-.|.++..+...+......+. +|+ ..+..|+.+.+.
T Consensus 16 ~vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~---~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 16 EVLKQYLPD-SGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGL---PNVRPPLALDVSAPPW 90 (204)
T ss_pred HHHHHHhCc-cCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCC---cccCCCeEeecCCCCC
Confidence 344444432 23269999999999999999998 667889999999887666655443222 233 334556655321
Q ss_pred --------CCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCC
Q 027517 103 --------SDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG 172 (222)
Q Consensus 103 --------~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (222)
..++||.|++.+++|-.+ ....+++...+.|++||.|++..+....+.+...-...+........
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd----- 165 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD----- 165 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC-----
Confidence 245899999999998775 46789999999999999999988777665544333322221111110
Q ss_pred hhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEe
Q 027517 173 LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 219 (222)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 219 (222)
......+.+++.++.+++|++..+..+++.....++.
T Consensus 166 ----------p~~GiRD~e~v~~lA~~~GL~l~~~~~MPANN~~Lvf 202 (204)
T PF06080_consen 166 ----------PEWGIRDIEDVEALAAAHGLELEEDIDMPANNLLLVF 202 (204)
T ss_pred ----------CCcCccCHHHHHHHHHHCCCccCcccccCCCCeEEEE
Confidence 1123568889999999999999999999988776554
|
The function of this family is unknown. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=105.50 Aligned_cols=171 Identities=16% Similarity=0.148 Sum_probs=125.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCC-CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCcee
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFD 108 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 108 (222)
....+||||.||.|.+........+. ..++...|+|+..++..++..+..+.. .-+.+.++|+.+.. .-....+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~--~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE--DIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc--cceEEEecCCCCHhHhhccCCCCC
Confidence 45669999999999999888887543 258999999999999999988765543 33499999998742 2234579
Q ss_pred EEEEcccccCccc---HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 109 AITMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 109 ~v~~~~~l~~~~~---~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
+++.+..++.++| ....+..+.+.+.|||+++.+.-.. .|..+.+...+..+-- ...| .+
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw--HPQle~IAr~LtsHr~---g~~W------------vM 274 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW--HPQLEMIARVLTSHRD---GKAW------------VM 274 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC--CcchHHHHHHHhcccC---CCce------------EE
Confidence 9999999999987 3567899999999999998753111 1111222222211000 0000 13
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
+..|..|+.++++.+||+.+...-...|+|++.+|+|
T Consensus 275 RrRsq~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 275 RRRSQAEMDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred EecCHHHHHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 5679999999999999999999989999999999987
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8e-15 Score=107.02 Aligned_cols=114 Identities=20% Similarity=0.368 Sum_probs=93.1
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FS 103 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~ 103 (222)
+..+...+...+|||+|||+|.....++++. +..+++++|+++++.+.|++..+..+.+ .++++++.|+.++. ..
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~--~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLE--ERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcch--hceeEehhhHHHhhhccc
Confidence 3345556667899999999999999999885 3489999999999999999998765554 79999999998864 23
Q ss_pred CCceeEEEEcccccCccc------------------HHHHHHHHhcccCCCcEEEEE
Q 027517 104 DCFFDAITMGYGLRNVVD------------------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~------------------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
..+||+|+||-.+....+ .+.+++...++|||||.+.++
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 356999999887664421 367899999999999999886
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=113.40 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=91.6
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFS 103 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~ 103 (222)
+.+.+....+..+||||||+|..+..+++.. |...++|+|+++.+++.+.++....+. .|+.++++|+..+ .++
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL---~NV~~i~~DA~~ll~~~~ 189 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL---KNLLIINYDARLLLELLP 189 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHhhhhCC
Confidence 3444455556799999999999999999995 778999999999999999988765433 5899999998754 356
Q ss_pred CCceeEEEEcccccCcccH------HHHHHHHhcccCCCcEEEEEe
Q 027517 104 DCFFDAITMGYGLRNVVDK------RKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~------~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++++|.|++++...+.... ..+++.+.++|+|||.+.+.+
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 7889999997765443222 578999999999999998854
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-15 Score=108.10 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=115.6
Q ss_pred hhHH-HHhhhhc----CcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcc
Q 027517 4 FSLK-LQLNDLL----SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 4 ~~~y-d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (222)
|+.| |.|.+.+ .+......++ ++......+..++||+|||||-....+.... .+.+|+|+|+.|++.+.++
T Consensus 91 FD~~Ae~Fd~~LVdkL~Y~vP~~l~e-mI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 91 FDQYAERFDHILVDKLGYSVPELLAE-MIGKADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK 166 (287)
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHH-HHHhccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc
Confidence 4445 5554444 2333333332 3333344457899999999999988887663 3799999999999999887
Q ss_pred hhhhhhhcCCCeeEEeCCCCCcC--CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHH
Q 027517 79 QDLVSKACYKNIEWVEGDALDLP--FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 156 (222)
Q Consensus 79 ~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~ 156 (222)
--- -...+.++..+. ..+++||+|++..++.++-+...++.-....|+|||.+.++.-..+...- +.
T Consensus 167 g~Y--------D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~--f~- 235 (287)
T COG4976 167 GLY--------DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG--FV- 235 (287)
T ss_pred cch--------HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC--ee-
Confidence 311 122333333221 34578999999999999999999999999999999999987555433210 00
Q ss_pred HHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 157 EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
..++-..-.+...+..+++..||+++++.+.+
T Consensus 236 -----------------------l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 236 -----------------------LGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred -----------------------cchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 00111223577889999999999999887654
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=104.18 Aligned_cols=114 Identities=24% Similarity=0.309 Sum_probs=99.9
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+....+..|+++|+|.|.|+|.++..|+...++.++++.+|+.++..+.|++++...... +++.+..+|+.+...+
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~--d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG--DRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc--cceEEEeccccccccc
Confidence 45677788999999999999999999999998888889999999999999999999876443 4589999999886655
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+ .||+|+. .+|++-.+++++++.|+|||.+++..++
T Consensus 162 ~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 162 E-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred c-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 4 7999998 7899999999999999999999875443
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-14 Score=107.47 Aligned_cols=139 Identities=24% Similarity=0.314 Sum_probs=100.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|-++...++. +. .+++|+|++|-+++.++++...++.. ..+.....+....+ ..++||+|++
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA-~~v~g~DiDp~AV~aa~eNa~~N~v~--~~~~~~~~~~~~~~-~~~~~DvIVA 235 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GA-KKVVGVDIDPQAVEAARENARLNGVE--LLVQAKGFLLLEVP-ENGPFDVIVA 235 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CC-ceEEEecCCHHHHHHHHHHHHHcCCc--hhhhcccccchhhc-ccCcccEEEe
Confidence 47889999999999999988876 32 37999999999999999988665432 11222222322222 2368999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
|-..+ -...+...+.+.+||||+++++.+... ..+.
T Consensus 236 NILA~---vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------------------q~~~ 271 (300)
T COG2264 236 NILAE---VLVELAPDIKRLLKPGGRLILSGILED-----------------------------------------QAES 271 (300)
T ss_pred hhhHH---HHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------------------HHHH
Confidence 76322 236788899999999999998643321 1357
Q ss_pred HHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 193 LEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
+.+.+.++||+++++... +-|..+.++|
T Consensus 272 V~~a~~~~gf~v~~~~~~--~eW~~i~~kr 299 (300)
T COG2264 272 VAEAYEQAGFEVVEVLER--EEWVAIVGKR 299 (300)
T ss_pred HHHHHHhCCCeEeEEEec--CCEEEEEEEc
Confidence 788899999999998755 4466776665
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-15 Score=106.61 Aligned_cols=116 Identities=24% Similarity=0.275 Sum_probs=89.2
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
......+++.+...|+.+|||||||+|+.+..+++..++.+.|+++|.++...+.|++++...+. .++.+..+|...
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~---~nv~~~~gdg~~ 134 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI---DNVEVVVGDGSE 134 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT---HSEEEEES-GGG
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc---CceeEEEcchhh
Confidence 33446677888899999999999999999999999987777899999999999999999987654 489999999876
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
--....+||.|++......+|. .+.+.|++||+|++..-
T Consensus 135 g~~~~apfD~I~v~~a~~~ip~------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEIPE------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TTGGG-SEEEEEESSBBSS--H------HHHHTEEEEEEEEEEES
T ss_pred ccccCCCcCEEEEeeccchHHH------HHHHhcCCCcEEEEEEc
Confidence 3333467999999998875543 36667899999987543
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-14 Score=108.33 Aligned_cols=136 Identities=24% Similarity=0.298 Sum_probs=95.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+|||+|||+|-++...++. +. .+|+++|+++.+++.++++...++.. .++.+ ....+ ....+||+|+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-GA-~~v~a~DiDp~Av~~a~~N~~~N~~~--~~~~v--~~~~~--~~~~~~dlvv 230 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-GA-KKVVAIDIDPLAVEAARENAELNGVE--DRIEV--SLSED--LVEGKFDLVV 230 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-TB-SEEEEEESSCHHHHHHHHHHHHTT-T--TCEEE--SCTSC--TCCS-EEEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHHHHHcCCC--eeEEE--EEecc--cccccCCEEE
Confidence 356789999999999999988876 33 37999999999999999998776543 34433 22222 2247899999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHH
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 191 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (222)
+|-... -...++..+.+.|+|||+++++.+-.. ..+
T Consensus 231 ANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~~-----------------------------------------~~~ 266 (295)
T PF06325_consen 231 ANILAD---VLLELAPDIASLLKPGGYLILSGILEE-----------------------------------------QED 266 (295)
T ss_dssp EES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------------------------GHH
T ss_pred ECCCHH---HHHHHHHHHHHhhCCCCEEEEccccHH-----------------------------------------HHH
Confidence 976433 346677889999999999998654321 235
Q ss_pred HHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 192 DLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 192 ~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
++.+.+++ ||++++.... +.|..++++|
T Consensus 267 ~v~~a~~~-g~~~~~~~~~--~~W~~l~~~K 294 (295)
T PF06325_consen 267 EVIEAYKQ-GFELVEEREE--GEWVALVFKK 294 (295)
T ss_dssp HHHHHHHT-TEEEEEEEEE--TTEEEEEEEE
T ss_pred HHHHHHHC-CCEEEEEEEE--CCEEEEEEEe
Confidence 77788876 9999887743 3455666554
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=108.01 Aligned_cols=125 Identities=20% Similarity=0.238 Sum_probs=98.0
Q ss_pred cCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE
Q 027517 14 LSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 93 (222)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (222)
+|.+.-..=.+.+++.+....+.+|||+|||.|.+...+++.. |..+++.+|++..+++.+++++..... .+..+.
T Consensus 138 FS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~---~~~~v~ 213 (300)
T COG2813 138 FSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGV---ENTEVW 213 (300)
T ss_pred CcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCC---CccEEE
Confidence 3444444445677787877777799999999999999999994 688999999999999999999876543 244667
Q ss_pred eCCCCCcCCCCCceeEEEEcccccCccc-----HHHHHHHHhcccCCCcEEEEEec
Q 027517 94 EGDALDLPFSDCFFDAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 94 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..|..+.. . ++||+|+||-.+|.=.+ ..++++...+.|++||.|.|+--
T Consensus 214 ~s~~~~~v-~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 214 ASNLYEPV-E-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred Eecccccc-c-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 77766532 2 38999999999985533 24789999999999999988743
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-14 Score=108.27 Aligned_cols=104 Identities=22% Similarity=0.233 Sum_probs=78.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.++++....... .++.....+... ...++||+|++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~--~~~~~~~~~~~~--~~~~~fDlVva 231 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVS--DRLQVKLIYLEQ--PIEGKADVIVA 231 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCC--cceEEEeccccc--ccCCCceEEEE
Confidence 46789999999999999887764 3 348999999999999999987654322 345556555332 23468999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+...+ ....++.++.+.|+|||++++..+.
T Consensus 232 n~~~~---~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 232 NILAE---VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ecCHH---HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 76533 3467889999999999999986543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=106.06 Aligned_cols=103 Identities=19% Similarity=0.273 Sum_probs=80.8
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEccc
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 115 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 115 (222)
.+|||+|||+|..+..+++.. +..+++++|+|+.+++.++++....+.. .++.++++|+.+. .+.++||+|+++-.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~--~~i~~~~~D~~~~-l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLE--DRVTLIESDLFAA-LPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC--CcEEEEECchhhh-CCCCCccEEEECCC
Confidence 689999999999999999874 6679999999999999999998654422 4699999998652 23457999999743
Q ss_pred cc-------------Cccc------------HHHHHHHHhcccCCCcEEEEE
Q 027517 116 LR-------------NVVD------------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 116 l~-------------~~~~------------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.. +.|. ...+++.+.+.|+|||.+++.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 21 1111 256789999999999999763
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-15 Score=98.20 Aligned_cols=106 Identities=29% Similarity=0.409 Sum_probs=85.8
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CCCCceeEEEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAITM 112 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~ 112 (222)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++...... .+++++++|..+.. .+.++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLD--DRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTT--TTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCC--ceEEEEECchhhchhhccCceeEEEEE
Confidence 4589999999999999999883 579999999999999999988765432 57999999998764 56788999999
Q ss_pred cccccCcc--------cHHHHHHHHhcccCCCcEEEEEec
Q 027517 113 GYGLRNVV--------DKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 113 ~~~l~~~~--------~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+-.+.... ....+++++.+.|+|||.+++..+
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 88877542 136789999999999999988643
|
... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.3e-14 Score=113.37 Aligned_cols=139 Identities=18% Similarity=0.193 Sum_probs=103.0
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
+.+|||+|||+|..+..+++.+ ++.+++++|+|+.+++.++++....+.. .++.++++|+.+. .+.++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~--~~v~~~~~D~~~~-~~~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVT--DRIQIIHSNWFEN-IEKQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCc--cceeeeecchhhh-CcCCCccEEEECC
Confidence 4689999999999999998875 5679999999999999999987654322 4788999997652 2346799999965
Q ss_pred cccCc--------------c------------cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccccccc
Q 027517 115 GLRNV--------------V------------DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVA 168 (222)
Q Consensus 115 ~l~~~--------------~------------~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (222)
..... | ....+++.+.++|+|||.+++. ...
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~---------------------- 271 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF---------------------- 271 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC----------------------
Confidence 43211 1 0245677888999999999763 221
Q ss_pred ccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEe
Q 027517 169 SGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 219 (222)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 219 (222)
-..+.+.+++++.||..+++.....|...+++
T Consensus 272 -------------------~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~ 303 (506)
T PRK01544 272 -------------------KQEEAVTQIFLDHGYNIESVYKDLQGHSRVIL 303 (506)
T ss_pred -------------------chHHHHHHHHHhcCCCceEEEecCCCCceEEE
Confidence 13457788899999998888777777654444
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-14 Score=101.89 Aligned_cols=117 Identities=20% Similarity=0.260 Sum_probs=88.5
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+..+..+...+...++.+|||+|||+|.++..+++. .++.+++++|+++++++.++++....+. .+++++.+|+.+
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~~~~---~~v~~~~~d~~~ 101 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDRFGV---KNVEVIEGSAPE 101 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCC---CCeEEEECchHH
Confidence 334445667777778889999999999999998876 3567999999999999999988765432 478999998865
Q ss_pred -cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 100 -LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 -~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
++.....+|.++... ..+...+++++.+.|+|||.+++...
T Consensus 102 ~~~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 102 CLAQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHhhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 222123357666532 23457889999999999999988754
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.8e-14 Score=103.34 Aligned_cols=126 Identities=14% Similarity=0.269 Sum_probs=95.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
+..+|||+|||+|..+..+++.. +..+++++|+++.+++.++++. +++.++++|+.+... .++||+|+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~D~~e~~~-~~kFDlIIsN 133 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL--------PEAEWITSDVFEFES-NEKFDVVISN 133 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--------cCCEEEECchhhhcc-cCCCcEEEEc
Confidence 45699999999999998888763 3468999999999999998764 478899999988653 3679999999
Q ss_pred ccccCccc--------------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCCh
Q 027517 114 YGLRNVVD--------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL 173 (222)
Q Consensus 114 ~~l~~~~~--------------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (222)
..+++.+. ..+.+......|+|+|.+.+.-...+
T Consensus 134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~-------------------------- 187 (279)
T PHA03411 134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP-------------------------- 187 (279)
T ss_pred CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc--------------------------
Confidence 99887532 13456666778889997766522111
Q ss_pred hHHHHHhHHhHhhcCCHHHHHHHHHHcCCeE
Q 027517 174 AEEYQYLKSSIREFLTGKDLEKLALEIGFSR 204 (222)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 204 (222)
.+..-+++++..++++++||..
T Consensus 188 ---------~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 188 ---------YYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred ---------cccccCCHHHHHHHHHhcCcEe
Confidence 1123468899999999999974
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-14 Score=106.70 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=82.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh--cCCCeeEEeCCCCCc-CCCCCceeE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDALDL-PFSDCFFDA 109 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~-~~~~~~~D~ 109 (222)
+++.+||+||||+|..+..+++. ....+|+++|+++.+++.+++.+...... ..++++++.+|+... ....++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 45679999999999999999876 23458999999999999999987543211 126899999998763 334568999
Q ss_pred EEEcccccCccc----HHHHHHHHhcccCCCcEEEEE
Q 027517 110 ITMGYGLRNVVD----KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 110 v~~~~~l~~~~~----~~~~l~~~~~~l~~gG~l~i~ 142 (222)
|++...-...+. ...+++.+++.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998654332221 256789999999999998764
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=109.43 Aligned_cols=114 Identities=25% Similarity=0.367 Sum_probs=88.0
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.....+++.+...++.+|||+|||+|..+..+++..+..+.|+++|+++++++.+++++...+. .++.++++|..+.
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~---~nV~~i~gD~~~~ 143 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI---ENVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCChhhc
Confidence 3344556666777888999999999999999998864445799999999999999988765443 4789999998765
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.....+||+|++...+.+.+ ..+.+.|+|||.+++..
T Consensus 144 ~~~~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 VPEFAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccccCCccEEEECCchHHhH------HHHHHhcCCCCEEEEEe
Confidence 44446799999987665443 34667899999987743
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.5e-14 Score=103.18 Aligned_cols=113 Identities=26% Similarity=0.403 Sum_probs=91.3
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS- 103 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~- 103 (222)
.++..+.+.||++|||.|.|+|.++..+++.+++.++|+.+|+.++..+.|++++...+.. .++.+...|+....+.
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~--~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD--DNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC--TTEEEEES-GGCG--ST
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC--CCceeEecceecccccc
Confidence 5667788999999999999999999999999999999999999999999999998876543 5899999999753332
Q ss_pred --CCceeEEEEcccccCcccHHHHHHHHhccc-CCCcEEEEEec
Q 027517 104 --DCFFDAITMGYGLRNVVDKRKALEESFRVL-KPGSRISVLDF 144 (222)
Q Consensus 104 --~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l-~~gG~l~i~~~ 144 (222)
+..+|.|++ .+|++-.++..+.+.| ++||++....+
T Consensus 109 ~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp T-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred cccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 357999998 7788889999999999 89999987543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.4e-14 Score=111.82 Aligned_cols=119 Identities=23% Similarity=0.373 Sum_probs=94.1
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-- 101 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-- 101 (222)
..+...+...++.+|||+|||+|..+.++++.+++.++++++|+++.+++.+++++...+. .++.+++.|+.+.+
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRNLLEL 318 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhhcccc
Confidence 3444556677889999999999999999999876667999999999999999999876654 47899999988764
Q ss_pred --CCCCceeEEEEcc------cccCccc----------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 --FSDCFFDAITMGY------GLRNVVD----------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 --~~~~~~D~v~~~~------~l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
...++||.|++.. ++.+.++ ...++.++.+.|||||+++..+.+
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3346799999742 3333333 367899999999999999876544
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.1e-14 Score=102.34 Aligned_cols=111 Identities=21% Similarity=0.156 Sum_probs=86.3
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
....+.+.+...++.+|||+|||+|..+..+++.. .+++++|+++++++.+++++...+. .++++..+|..+..
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~ 139 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL---HNVSVRHGDGWKGW 139 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC---CceEEEECCcccCC
Confidence 33455666777888999999999999998777663 3899999999999999988765432 46899999976532
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+.++||+|++...+++++ +.+.+.|+|||.+++...
T Consensus 140 ~~~~~fD~I~~~~~~~~~~------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 PAYAPFDRILVTAAAPEIP------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCCCcCEEEEccCchhhh------HHHHHhcCCCcEEEEEEc
Confidence 2346799999988766553 457789999999987654
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.9e-14 Score=101.26 Aligned_cols=95 Identities=21% Similarity=0.198 Sum_probs=76.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
...++||||+|.|..+..++..+ .+|++.|.|+.|....+++ +.+++.. .+....+.+||+|.|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~k----------g~~vl~~--~~w~~~~~~fDvIscL 158 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKK----------GFTVLDI--DDWQQTDFKFDVISCL 158 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhC----------CCeEEeh--hhhhccCCceEEEeeh
Confidence 35689999999999999999875 3799999999998776665 3343322 2232234579999999
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++|..-.+|..+|+.+++.|+|+|++++.-
T Consensus 159 NvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 159 NVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999999999999999999999988753
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-14 Score=98.98 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=92.7
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.....+.+.+...++.+|||||||+|..+..+++.. .+|+.+|..++..+.|++++...+. .|+.+.++|...=
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~---~nV~v~~gDG~~G 132 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY---ENVTVRHGDGSKG 132 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC---CceEEEECCcccC
Confidence 344567788888999999999999999999999884 3999999999999999999877664 5799999998762
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
=.+..+||.|+.......+|+. +.+-|++||++++..-
T Consensus 133 ~~~~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 133 WPEEAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence 1234689999999988877753 6667899999988654
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=103.26 Aligned_cols=148 Identities=18% Similarity=0.079 Sum_probs=100.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
...+.||+|||-|+.+..++-.+ -.+|..+|..+..++.|++.+.... ..-.++++..+.++..+..+||+|++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEeh
Confidence 35699999999999998776432 3489999999999999998765421 123578888888876555789999999
Q ss_pred ccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHH
Q 027517 114 YGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 191 (222)
Q Consensus 114 ~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (222)
.++.|+.| ...+|+++++.|+|+|.+++-+-....... .... ....-..+.+
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~-----------~~D~---------------~DsSvTRs~~ 183 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD-----------EFDE---------------EDSSVTRSDE 183 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE-----------EEET---------------TTTEEEEEHH
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc-----------ccCC---------------ccCeeecCHH
Confidence 99999965 678899999999999999986644433210 0000 0011234778
Q ss_pred HHHHHHHHcCCeEEEEeeecC
Q 027517 192 DLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 192 ~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
.+.+++++||+++++.....+
T Consensus 184 ~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 184 HFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp HHHHHHHHCT-EEEEEEE-TT
T ss_pred HHHHHHHHcCCEEEEeccccC
Confidence 999999999999998776543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.5e-13 Score=98.38 Aligned_cols=115 Identities=20% Similarity=0.205 Sum_probs=82.6
Q ss_pred HHHHHHHHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 21 IWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 21 ~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
.+.+.++..... .+..+|||+|||+|.++..+++.. ++.+++++|+|+.+++.++++.... ++.++++|+.+
T Consensus 72 ~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~~ 144 (251)
T TIGR03704 72 FLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLYD 144 (251)
T ss_pred HHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeechh
Confidence 333444444332 234589999999999999998874 5568999999999999999887542 35788888865
Q ss_pred c-CC-CCCceeEEEEcccccCcc----------------------c----HHHHHHHHhcccCCCcEEEEE
Q 027517 100 L-PF-SDCFFDAITMGYGLRNVV----------------------D----KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 100 ~-~~-~~~~~D~v~~~~~l~~~~----------------------~----~~~~l~~~~~~l~~gG~l~i~ 142 (222)
. +. ..++||+|+++-...... + ...+++...++|+|||++++.
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3 21 125799999987643210 0 246777888999999999875
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=99.32 Aligned_cols=137 Identities=22% Similarity=0.295 Sum_probs=104.0
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccc
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 116 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 116 (222)
+|||+|||+|..+..+++.. +..+|+++|+|+++++.|+++....+. .++.++.+|+.+- .. ++||+|++|-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~~-~~-~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFEP-LR-GKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeecccc-cC-CceeEEEeCCCC
Confidence 79999999999999999985 667999999999999999999876543 3566666676552 22 489999998763
Q ss_pred cCcc-----------c--------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccC
Q 027517 117 RNVV-----------D--------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 171 (222)
Q Consensus 117 ~~~~-----------~--------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (222)
-.-+ + ..+++.++.+.|+|||.+++.. .
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~-g-------------------------- 239 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI-G-------------------------- 239 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE-C--------------------------
Confidence 3222 1 2467888888999988886632 1
Q ss_pred ChhHHHHHhHHhHhhcCCHHHHHHHHHHcC-CeEEEEeeecCCeeeeEeee
Q 027517 172 GLAEEYQYLKSSIREFLTGKDLEKLALEIG-FSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~~~~~~~~~ 221 (222)
.-..+.+.+++++.| |..+...+...+...++.++
T Consensus 240 ---------------~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 240 ---------------LTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred ---------------CCcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 113468899999999 78888888888776666554
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=109.28 Aligned_cols=129 Identities=19% Similarity=0.326 Sum_probs=97.0
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FS 103 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~ 103 (222)
.+...+...++.+|||+|||+|..+.++++.++++++++++|+++.+++.+++++.+.+. .++.+.+.|+..++ ..
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~~~ 304 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTEYV 304 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhhhh
Confidence 344456677889999999999999999999876677999999999999999999876543 46889999988765 33
Q ss_pred CCceeEEEEcccc------cCccc----------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHH
Q 027517 104 DCFFDAITMGYGL------RNVVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 156 (222)
Q Consensus 104 ~~~~D~v~~~~~l------~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~ 156 (222)
.++||.|++.... ..-++ ..+++.++.+.|||||.++.++.+.........+.
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~ 379 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVK 379 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHH
Confidence 5679999973332 21121 25679999999999999988776654333333333
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=102.38 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=90.3
Q ss_pred HhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCce
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 107 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (222)
..+...++.+|||+|||+|..+..+++.+++.+.++++|+++.+++.+++++...+. .++.+...|...++...++|
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNVAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEecCCHHHhhhhccCC
Confidence 445667888999999999999999998876667999999999999999999876543 47889999987765444569
Q ss_pred eEEEEccccc------Cccc----------------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 108 DAITMGYGLR------NVVD----------------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 108 D~v~~~~~l~------~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
|.|++..... .-++ ...+|+...+.|||||+++..+-+.
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999743322 1111 2458999999999999998765543
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-13 Score=108.51 Aligned_cols=121 Identities=19% Similarity=0.308 Sum_probs=91.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF- 102 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~- 102 (222)
..+...+...++.+|||+|||+|..+.++++.++ .++++++|+++++++.+++++...+.. ..+.+..+|....+.
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEecccccccccc
Confidence 3455566777889999999999999999998864 679999999999999999998765432 123446667655433
Q ss_pred -CCCceeEEEEc------ccccCccc----------------HHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 103 -SDCFFDAITMG------YGLRNVVD----------------KRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 103 -~~~~~D~v~~~------~~l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
+.++||.|++. +++++.++ ...+|.++.+.|||||.++.++.+-.
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 35679999963 33444444 36789999999999999998776653
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.3e-13 Score=107.82 Aligned_cols=118 Identities=24% Similarity=0.329 Sum_probs=91.3
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
....+...++.+|||+|||+|..+..+++.++..++++++|+++.+++.+++++...+. .++.+.+.|+.+.+ +..
T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~-~~~ 317 (445)
T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS-PEE 317 (445)
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc-cCC
Confidence 34455667888999999999999999998776567999999999999999998876543 47899999988764 346
Q ss_pred ceeEEEEccc------ccCcc----------------cHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 106 FFDAITMGYG------LRNVV----------------DKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 106 ~~D~v~~~~~------l~~~~----------------~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
+||.|++... +...+ ....++.++.+.|||||+++..+.+..
T Consensus 318 ~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 318 QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 7999996321 11111 124689999999999999998776553
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=92.31 Aligned_cols=131 Identities=21% Similarity=0.285 Sum_probs=83.9
Q ss_pred HHHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 26 AVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 26 ~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
+.+++.. ++...|.|+|||.+.++..+. .+..|..+|+-+ .+-.++..|+..+|.++
T Consensus 63 iI~~l~~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva------------------~n~~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 63 IIEWLKKRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA------------------PNPRVTACDIANVPLED 120 (219)
T ss_dssp HHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-------------------SSTTEEES-TTS-S--T
T ss_pred HHHHHHhcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC------------------CCCCEEEecCccCcCCC
Confidence 4444443 345689999999999986544 345899999854 23457779999999999
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhH
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 184 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (222)
++.|+++++.+|-- .+....+++..|+|||||.|.|.+...
T Consensus 121 ~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S-------------------------------------- 161 (219)
T PF05148_consen 121 ESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS-------------------------------------- 161 (219)
T ss_dssp T-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG--------------------------------------
T ss_pred CceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc--------------------------------------
Confidence 99999998877643 467889999999999999999987553
Q ss_pred hhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEe
Q 027517 185 REFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 219 (222)
Q Consensus 185 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 219 (222)
++-+.+++.+.++..||+..... ..+..+..+.
T Consensus 162 -Rf~~~~~F~~~~~~~GF~~~~~d-~~n~~F~~f~ 194 (219)
T PF05148_consen 162 -RFENVKQFIKALKKLGFKLKSKD-ESNKHFVLFE 194 (219)
T ss_dssp -G-S-HHHHHHHHHCTTEEEEEEE---STTEEEEE
T ss_pred -cCcCHHHHHHHHHHCCCeEEecc-cCCCeEEEEE
Confidence 33466788999999999998854 4445554443
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-13 Score=95.04 Aligned_cols=111 Identities=24% Similarity=0.290 Sum_probs=83.0
Q ss_pred HHHHHHhhCCCC--CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC-C
Q 027517 23 KRMAVSWSGAKT--GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL-D 99 (222)
Q Consensus 23 ~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~-~ 99 (222)
....++++..++ ..-|||||||+|-....+.+ ++..++|+|+|+.|++.|.++-- .-.++.+|+- .
T Consensus 37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~e~--------egdlil~DMG~G 105 (270)
T KOG1541|consen 37 AERALELLALPGPKSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVEREL--------EGDLILCDMGEG 105 (270)
T ss_pred HHHHHHHhhCCCCCCcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHHHhhh--------hcCeeeeecCCC
Confidence 344555555444 67899999999999988874 46789999999999999997421 1245666664 4
Q ss_pred cCCCCCceeEEEEcccccCcc-------c----HHHHHHHHhcccCCCcEEEEEec
Q 027517 100 LPFSDCFFDAITMGYGLRNVV-------D----KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~-------~----~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+|+.+++||.+++..++.++- + ...++..++..|++|++.++..+
T Consensus 106 lpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 106 LPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 788889999999877766551 1 24567889999999999987543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.4e-13 Score=94.59 Aligned_cols=100 Identities=30% Similarity=0.391 Sum_probs=75.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--------C
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------F 102 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~ 102 (222)
...++.+|||+|||+|.++..+++...+..+++++|+++.+ .. +++.+++.|+.+.+ .
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~--------~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI--------ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC--------CCceEEEeeCCChhHHHHHHHHh
Confidence 45778899999999999999998886555689999999854 11 46788888887632 3
Q ss_pred CCCceeEEEEccccc--------Cc---ccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLR--------NV---VDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~--------~~---~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+.++||+|++..+.+ +. .....+++.+.+.|+|||++++..+
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 456799999865421 11 1136789999999999999988643
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-13 Score=95.22 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=74.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh---------------------------
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--------------------------- 85 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~--------------------------- 85 (222)
..+..+|||||..|..+..+++.+++. .+.|+||++..++.|++.......-
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 346689999999999999999998553 7999999999999999876532100
Q ss_pred ------------cCCCeeEEeCCCCCcCCCCCceeEEEEccccc--Cc----ccHHHHHHHHhcccCCCcEEEE
Q 027517 86 ------------CYKNIEWVEGDALDLPFSDCFFDAITMGYGLR--NV----VDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 86 ------------~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~--~~----~~~~~~l~~~~~~l~~gG~l~i 141 (222)
...|..+...|+. ......||+|+|..+=- |+ ....++++++.+.|.|||+|++
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 0011111111122 12346799999855411 22 3478899999999999999976
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=105.17 Aligned_cols=116 Identities=22% Similarity=0.359 Sum_probs=88.9
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--C
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--F 102 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~ 102 (222)
.+...+...++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.++++....+ .++.++++|+.+.+ .
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g----~~~~~~~~D~~~~~~~~ 309 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLG----LKATVIVGDARDPAQWW 309 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEcCcccchhhc
Confidence 34456667788999999999999999999885 34699999999999999999886654 24688899987653 2
Q ss_pred CCCceeEEEEccccc------Cccc----------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLR------NVVD----------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~------~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+.++||.|++..... +-++ ...+++.+.+.|||||+++..+.+
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 346799999644321 1111 246899999999999999887654
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=94.60 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=87.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh---------hhhhhcCCCeeEEeCCCCCcCC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD---------LVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
..++.+||..|||.|..+..|++. +.+|+|+|+|+.+++.+.+... ........++++.++|+.+++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 345679999999999999999965 6799999999999999755210 0000111478999999999753
Q ss_pred C---CCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 S---DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~---~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
. .++||+|+=...+++++. ..+..+.+.++|+|||.+++..+.
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 2 257999999888998853 578899999999999998887654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-13 Score=86.61 Aligned_cols=101 Identities=36% Similarity=0.534 Sum_probs=82.5
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCCceeEEEEccc
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMGYG 115 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~ 115 (222)
+|+|+|||.|..+..+++. ...+++++|+++..++.+++..... ...++.+...|..+... ..+++|+|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccc
Confidence 5899999999999988872 4569999999999999888432211 12578899999887653 4567999999999
Q ss_pred ccC-cccHHHHHHHHhcccCCCcEEEEE
Q 027517 116 LRN-VVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 116 l~~-~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+++ ......+++.+.+.++|||.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 998 677889999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-13 Score=99.90 Aligned_cols=111 Identities=12% Similarity=0.186 Sum_probs=85.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~ 111 (222)
+++.+|||||||+|.++..+++.. +..+++++|+++++++.+++.+..... .++++++.+|+.+. ....++||+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~--~~rv~v~~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN--GERFEVIEADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC--CCceEEEECCHHHHHHhCCCCCCEEE
Confidence 456799999999999999998885 677999999999999999988643221 25899999998663 22235799999
Q ss_pred Ecccc-cCcc---cHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 112 MGYGL-RNVV---DKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 112 ~~~~l-~~~~---~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
+...- ...+ ....+++.+++.|+|||++++..+..
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 85321 1122 13689999999999999998865544
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-12 Score=97.34 Aligned_cols=153 Identities=11% Similarity=0.028 Sum_probs=102.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcch--hhhh--hhcCCCeeEEeCCCCCc-CCCCCc
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQ--DLVS--KACYKNIEWVEGDALDL-PFSDCF 106 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~~~--~~~~~~i~~~~~d~~~~-~~~~~~ 106 (222)
.....+||++|||+|..+..+++. ++..+++++|+++++++.|++.. .... ....++++++.+|+.+. ....++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 345669999999999998888876 34568999999999999999631 1100 00126899999998873 334567
Q ss_pred eeEEEEcccccC---ccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 107 FDAITMGYGLRN---VVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 107 ~D~v~~~~~l~~---~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
||+|++...-.. ... ...+++.+++.|+|||.+++..-.. ... ...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp----~~~--~~~----------------------- 277 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP----ADA--PLV----------------------- 277 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh----hhh--HHH-----------------------
Confidence 999998743111 111 2568999999999999987752111 000 000
Q ss_pred HhHhhcCCHHHHHHHHHHcCCeEEEEeee---cCCeeeeEeeeC
Q 027517 182 SSIREFLTGKDLEKLALEIGFSRAKHYEL---SGGLMGNLVATR 222 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~---~~~~~~~~~~~k 222 (222)
...+.+.++++|+.+...... .++.|+..+|+|
T Consensus 278 --------~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 278 --------YWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred --------HHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeC
Confidence 013568888999988765554 234477777764
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-12 Score=94.32 Aligned_cols=145 Identities=25% Similarity=0.280 Sum_probs=100.3
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh---------hhhhcCCCeeEEeCCCCCc
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL---------VSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~d~~~~ 100 (222)
+...++.+||..|||.|..+..|+++ +.+|+|+|+|+.+++.+.+.... .......+|++.++|+.++
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 55677789999999999999999976 67999999999999998322111 0001124789999999987
Q ss_pred CCCC-CceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCch-hhHHHHHHhhcccccccccCChhHH
Q 027517 101 PFSD-CFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPF-TTAIQEWMIDNVVVPVASGYGLAEE 176 (222)
Q Consensus 101 ~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (222)
+... ++||+|+=...++.++ ...+..+.+.++|+|||.+++.....+.... ..+
T Consensus 110 ~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP---------------------- 167 (218)
T PF05724_consen 110 PPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP---------------------- 167 (218)
T ss_dssp GGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----------------------
T ss_pred ChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC----------------------
Confidence 6432 4799999887787774 4688899999999999995554443322110 000
Q ss_pred HHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEee
Q 027517 177 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 209 (222)
...+.+++.+++. .+|++.....
T Consensus 168 ---------f~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 168 ---------FSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp -------------HHHHHHHHT-TTEEEEEEEE
T ss_pred ---------CCCCHHHHHHHhc-CCcEEEEEec
Confidence 1247789999998 8898876554
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-12 Score=104.93 Aligned_cols=117 Identities=26% Similarity=0.336 Sum_probs=90.5
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--C
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--F 102 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~ 102 (222)
.+...+...++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+. .++.++++|+.+.. +
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccchh
Confidence 444556667888999999999999999998875667999999999999999998866543 36899999987753 2
Q ss_pred CCCceeEEEEccccc------Cccc----------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLR------NVVD----------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~------~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+ ++||+|++..... +.|+ ...+++.+.+.|||||.++..+..
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3 6799999754321 1111 245799999999999999876544
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.5e-13 Score=98.25 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=89.4
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C---
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P--- 101 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~--- 101 (222)
+..+....+..+|||+|||+|..+..++...++.++++++|+++++++.|++++...+.. .+++++.+|+.+. +
T Consensus 60 L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~--~~i~~~~gda~~~L~~l~ 137 (234)
T PLN02781 60 LSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD--HKINFIQSDALSALDQLL 137 (234)
T ss_pred HHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHH
Confidence 333445567789999999999999999887766779999999999999999998776543 5799999998763 1
Q ss_pred --CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 102 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+.++||+|++... -+.....+..+.+.|+|||.+++..
T Consensus 138 ~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 138 NNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred hCCCCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 12357999998542 2345678899999999999988754
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.6e-13 Score=102.39 Aligned_cols=110 Identities=23% Similarity=0.351 Sum_probs=78.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh-------cCCCeeEEeCCCCCc----CC
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-------CYKNIEWVEGDALDL----PF 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~d~~~~----~~ 102 (222)
++.+|||+|||-|+.+.-+... .-..++|+|+++..++.|+++....... ..-...++..|.... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 6789999999998888777665 3458999999999999999998322110 012356778887642 12
Q ss_pred CC--CceeEEEEcccccCc-c---cHHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SD--CFFDAITMGYGLRNV-V---DKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~--~~~D~v~~~~~l~~~-~---~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++ .+||+|.|.+++|+. . ....+|+++.+.|+|||+++.+.+.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 22 589999999999988 2 2466899999999999999988765
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=106.72 Aligned_cols=110 Identities=15% Similarity=0.046 Sum_probs=81.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcc--hhhhhh--hcCCCeeEEeCCCCCc-CCCCCce
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVSK--ACYKNIEWVEGDALDL-PFSDCFF 107 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~--~~~~~~--~~~~~i~~~~~d~~~~-~~~~~~~ 107 (222)
+++++|||+|||+|..+..+++. ++..+++++|+++++++.++++ +..... -..++++++.+|..+. ...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45679999999999999998875 3336999999999999999984 221110 0126899999998763 2234689
Q ss_pred eEEEEcccccCccc-----HHHHHHHHhcccCCCcEEEEEe
Q 027517 108 DAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 108 D~v~~~~~l~~~~~-----~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|+|++.......+. ...+++.+++.|+|||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99999765433222 1458899999999999998753
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=92.06 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=80.8
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+.+.+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++.... .+++++.+|+.+++.+.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~-----~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAA-----DNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccC-----CCEEEEECchhcCCccc
Confidence 4556666677889999999999999999976 358999999999999999886431 58999999999987766
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcc--cCCCcEEEEE
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRV--LKPGSRISVL 142 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~--l~~gG~l~i~ 142 (222)
.+||.|+++..++.. ...+..+.+. +.++|.+++.
T Consensus 76 ~~~d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 76 LQPYKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred cCCCEEEECCCcccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 679999998766532 2333333332 3467777664
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-12 Score=90.65 Aligned_cols=129 Identities=18% Similarity=0.254 Sum_probs=96.4
Q ss_pred HHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 27 VSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 27 ~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
.+.+.. +....|.|+|||.+.++. . ....|+.+|+-+ .+-.++.+|+.++|.+++
T Consensus 172 i~~ik~r~~~~vIaD~GCGEakiA~---~---~~~kV~SfDL~a------------------~~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 172 IRKIKRRPKNIVIADFGCGEAKIAS---S---ERHKVHSFDLVA------------------VNERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHhCcCceEEEecccchhhhhh---c---cccceeeeeeec------------------CCCceeeccccCCcCccC
Confidence 333433 345578899999998876 1 234799999744 355678899999999999
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
+.|+++++.+|- -.+...+++++.++|++||.++|.+...
T Consensus 228 svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~S--------------------------------------- 267 (325)
T KOG3045|consen 228 SVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVKS--------------------------------------- 267 (325)
T ss_pred cccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehhh---------------------------------------
Confidence 999999877653 2577889999999999999999987553
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEee
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVA 220 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 220 (222)
++-+...+.+.+...||.+.... .....|.++.-
T Consensus 268 Rf~dv~~f~r~l~~lGF~~~~~d-~~n~~F~lfef 301 (325)
T KOG3045|consen 268 RFSDVKGFVRALTKLGFDVKHKD-VSNKYFTLFEF 301 (325)
T ss_pred hcccHHHHHHHHHHcCCeeeehh-hhcceEEEEEE
Confidence 34466778899999999886644 44555555543
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=94.38 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=82.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCc-C-CCCCcee
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDL-P-FSDCFFD 108 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~-~-~~~~~~D 108 (222)
.+++.+||+||||.|..+..+++. ++..+++.+|+++.+++.+++.+..... ...++++++.+|+... . .+.++||
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 355779999999999999999876 3445899999999999999998753211 1126899999997653 1 2246799
Q ss_pred EEEEcccccCccc----HHHHHHHHhcccCCCcEEEEE
Q 027517 109 AITMGYGLRNVVD----KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 109 ~v~~~~~l~~~~~----~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+|++...-...+. ...+++.+++.|+|||.++..
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9998654332221 256899999999999999764
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.42 E-value=7e-12 Score=94.96 Aligned_cols=109 Identities=12% Similarity=0.064 Sum_probs=80.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCc-CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDL-PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~-~~~~~~~D~v 110 (222)
+.+.+||++|||+|..+..+++.. +..+++++|+++++++.+++.+..... ...+++++...|.... ....++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 345599999999999998888763 345899999999999999987643221 1125788888887552 2224689999
Q ss_pred EEcccccCcc--c--HHHHHHHHhcccCCCcEEEEE
Q 027517 111 TMGYGLRNVV--D--KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 111 ~~~~~l~~~~--~--~~~~l~~~~~~l~~gG~l~i~ 142 (222)
++......-+ . ...+++.+++.|+|||.+++.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9866532222 1 367889999999999999875
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-12 Score=91.82 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=75.9
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccc
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 116 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 116 (222)
.++|+|||+|..+..++..+ .+|+++|+|+.|++.+++......- .....+...+..++.-.+++.|+|++...+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~--~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYC--HTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred eEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccc--cCCccccccccccccCCCcceeeehhhhhH
Confidence 88999999998888888774 3899999999999999887522110 011122222333333346899999999999
Q ss_pred cCcccHHHHHHHHhcccCCCc-EEEEEecCC
Q 027517 117 RNVVDKRKALEESFRVLKPGS-RISVLDFNK 146 (222)
Q Consensus 117 ~~~~~~~~~l~~~~~~l~~gG-~l~i~~~~~ 146 (222)
|++. .+++++.++++||++| .+.+..+..
T Consensus 111 HWFd-le~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 111 HWFD-LERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred Hhhc-hHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 8884 5889999999998876 777766654
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=92.73 Aligned_cols=154 Identities=21% Similarity=0.163 Sum_probs=107.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
-...+|+|+|.|..+..+...+ + ++.+++++...+..+..... +.|+.+-+|..+. .|. -|+|++..
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P~--~daI~mkW 244 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TPK--GDAIWMKW 244 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CCC--cCeEEEEe
Confidence 4689999999999999999865 4 57777777776666665542 2478888888775 443 47999999
Q ss_pred cccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHH-HHHHhhcccccccccCChhHHHHHhHHhHhhcCCHH
Q 027517 115 GLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI-QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 191 (222)
Q Consensus 115 ~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (222)
++||+.| ..++|+++++.|+|||.+++.+...++....... ..+.. ..+...........-.+..
T Consensus 245 iLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~------------~~d~lm~~~~~~Gkert~~ 312 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTR------------DMDLLMLTQTSGGKERTLK 312 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceee------------hhHHHHHHHhccceeccHH
Confidence 9999965 6899999999999999999999866542211110 00000 0000111111112346899
Q ss_pred HHHHHHHHcCCeEEEEeeecCC
Q 027517 192 DLEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 192 ~~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
|++.++.++||.+..+......
T Consensus 313 e~q~l~~~~gF~~~~~~~~~~~ 334 (342)
T KOG3178|consen 313 EFQALLPEEGFPVCMVALTAYS 334 (342)
T ss_pred HHHhcchhhcCceeEEEeccCc
Confidence 9999999999999887755443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.6e-13 Score=94.32 Aligned_cols=155 Identities=19% Similarity=0.169 Sum_probs=110.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
....++|||||-|....++... .-.+++.+|.|..|++.++..-. ++ -.+...++|-+.+++.+.++|+|+++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~qd---p~--i~~~~~v~DEE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQD---PS--IETSYFVGDEEFLDFKENSVDLIISS 144 (325)
T ss_pred hCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhccCC---Cc--eEEEEEecchhcccccccchhhhhhh
Confidence 3458999999999999999876 24589999999999999886531 10 23566788988889888999999999
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHH
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 193 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (222)
.++|+..+.+..+.+++..|||+|.++-.-+..+............. .+.-.-+.+++..+-...++
T Consensus 145 lslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAe-------------lER~GGiSphiSPf~qvrDi 211 (325)
T KOG2940|consen 145 LSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAE-------------LEREGGISPHISPFTQVRDI 211 (325)
T ss_pred hhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHH-------------HHhccCCCCCcChhhhhhhh
Confidence 99999999999999999999999998765444433211111111100 00001112233344566889
Q ss_pred HHHHHHcCCeEEEEe
Q 027517 194 EKLALEIGFSRAKHY 208 (222)
Q Consensus 194 ~~~l~~~Gf~~~~~~ 208 (222)
..+|..+||....+.
T Consensus 212 G~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 212 GNLLTRAGFSMLTVD 226 (325)
T ss_pred hhHHhhcCcccceec
Confidence 999999999876543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-12 Score=91.90 Aligned_cols=110 Identities=21% Similarity=0.315 Sum_probs=87.8
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C-----C
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-----F 102 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-----~ 102 (222)
+....+.++|||||+++|..+..+++.++++++++.+|++++..+.|++.+...+.. .+++++.+|+.+. + .
T Consensus 40 l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~--~~I~~~~gda~~~l~~l~~~~ 117 (205)
T PF01596_consen 40 LVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD--DRIEVIEGDALEVLPELANDG 117 (205)
T ss_dssp HHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG--GGEEEEES-HHHHHHHHHHTT
T ss_pred HHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC--CcEEEEEeccHhhHHHHHhcc
Confidence 334456679999999999999999998877889999999999999999988776544 5899999998763 1 1
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+.++||+|+.-.. -.+....++.+.+.|+|||.+++-.
T Consensus 118 ~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 118 EEGQFDFVFIDAD---KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp TTTSEEEEEEEST---GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred CCCceeEEEEccc---ccchhhHHHHHhhhccCCeEEEEcc
Confidence 1357999998663 3456778888999999999998754
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-12 Score=90.66 Aligned_cols=117 Identities=18% Similarity=0.269 Sum_probs=93.5
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCc-C-
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDL-P- 101 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~-~- 101 (222)
.+..+....+.++|||||.+.|..+..++..++..++++.+|++++..+.|+++++..+.. +++..+. +|..+. .
T Consensus 50 ~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~--~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 50 LLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD--DRIELLLGGDALDVLSR 127 (219)
T ss_pred HHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEEecCcHHHHHHh
Confidence 3444455667889999999999999999999865779999999999999999999887665 5688888 577653 2
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
...++||+|+.-. .-.+.+..++.+.+.|+|||.+++-....
T Consensus 128 ~~~~~fDliFIDa---dK~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 128 LLDGSFDLVFIDA---DKADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred ccCCCccEEEEeC---ChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 3468899999854 23456788999999999999998755443
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-11 Score=105.06 Aligned_cols=106 Identities=24% Similarity=0.251 Sum_probs=79.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-------------hcCCCeeEEeCCCCCcC
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-------------ACYKNIEWVEGDALDLP 101 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~d~~~~~ 101 (222)
+.+|||+|||+|..+..+++.. +..+++++|+|+++++.|+++...... ....++.++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4589999999999999999885 556999999999999999998865321 11247999999987743
Q ss_pred CC-CCceeEEEEcccccCcc----------------------------------c----HHHHHHHHhcccCCCcEEEE
Q 027517 102 FS-DCFFDAITMGYGLRNVV----------------------------------D----KRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 102 ~~-~~~~D~v~~~~~l~~~~----------------------------------~----~~~~l~~~~~~l~~gG~l~i 141 (222)
.. ..+||+|++|-..-.-. + ..+++.+..++|+|||.+++
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 22 23699999876521100 0 25677788889999998865
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-11 Score=91.21 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=90.9
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C-C-
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-F- 102 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~- 102 (222)
+..+....+.++|||+|+++|..+..++..++++++++.+|.+++..+.|+++++..+.. ++++++.+|+.+. + +
T Consensus 110 L~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~--~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 110 LAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS--HKVNVKHGLAAESLKSMI 187 (278)
T ss_pred HHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHH
Confidence 333445566789999999999999999988776778999999999999999999876654 6899999998763 2 1
Q ss_pred ---CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 ---SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..++||+|+.-.. -.+....++.+.+.|+|||.+++-..
T Consensus 188 ~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 188 QNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred hcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 1357999998653 24567788899999999999987543
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.3e-12 Score=92.79 Aligned_cols=112 Identities=25% Similarity=0.397 Sum_probs=85.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh---cCCCeeEEeCCCCC------cCC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA---CYKNIEWVEGDALD------LPF 102 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~d~~~------~~~ 102 (222)
.+++..++++|||-|+.++..-+. .-..++|+|+++-.++.|+++......- ..-.+.++.+|... +++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 356788999999999988877665 2458999999999999999987543211 11236788888765 234
Q ss_pred CCCceeEEEEcccccCc----ccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++.+||+|-|.+++|+- .....+|+++.+.|+|||.++-+.+.
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 45559999999999865 33577899999999999999766544
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=88.21 Aligned_cols=103 Identities=25% Similarity=0.416 Sum_probs=80.5
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C--CCCCceeEEEE
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P--FSDCFFDAITM 112 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~~D~v~~ 112 (222)
..+||||||.|.++..+++. .|+..++|+|++...+..+..+....+. .|+.++++|+..+ . ++++++|.|+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~-~Pd~n~iGiE~~~~~v~~a~~~~~~~~l---~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKR-NPDINFIGIEIRKKRVAKALRKAEKRGL---KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHH-STTSEEEEEES-HHHHHHHHHHHHHHTT---SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHH-CCCCCEEEEecchHHHHHHHHHHHhhcc---cceEEEEccHHHHHhhcccCCchheEEE
Confidence 38999999999999999999 4888999999999999999888766543 6999999999872 2 45578999999
Q ss_pred cccccCccc--------HHHHHHHHhcccCCCcEEEEE
Q 027517 113 GYGLRNVVD--------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 113 ~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
++.--+... ...+++.+.++|+|||.+.+.
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 877554422 267899999999999999875
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.2e-11 Score=95.95 Aligned_cols=114 Identities=19% Similarity=0.322 Sum_probs=85.0
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+.+...+++++...++.+|||+|||+|.++..+++. ..+++++|+|+++++.+++++...+. .++.+.++|+.+
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~---~~v~~~~~d~~~ 356 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGL---DNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEeChHH
Confidence 344455666666677889999999999999999876 25899999999999999988765443 479999999865
Q ss_pred c----CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 100 L----PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 100 ~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
. ++.+++||+|+++-.-.- ....++.+.+ ++|++.+++++
T Consensus 357 ~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 357 DFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 2 233457999998665332 2344555554 68888888865
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=87.49 Aligned_cols=150 Identities=25% Similarity=0.273 Sum_probs=106.1
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCC
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDC 105 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~ 105 (222)
..+.+.+.+|||.+.|-|.++...+++ ++ +|+.++.++..++.|.-+.=...... .++.++.+|+.++ .+++.
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~-~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFE-IAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccc-cccEEecccHHHHHhcCCcc
Confidence 345566899999999999999988876 45 89999999999998887643322211 3689999999874 46788
Q ss_pred ceeEEEEcccc-cCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 106 FFDAITMGYGL-RNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 106 ~~D~v~~~~~l-~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
+||+|+---.= .+-. --..+.++++++|||||.++--.-.+... +
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r-y------------------------------- 252 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR-Y------------------------------- 252 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc-c-------------------------------
Confidence 89999852221 0111 13678999999999999997543322110 0
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeee
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHYELSGGLMG 216 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 216 (222)
...--+..+.+.|+++||++++......|+++
T Consensus 253 --rG~d~~~gVa~RLr~vGF~~v~~~~~~~gv~A 284 (287)
T COG2521 253 --RGLDLPKGVAERLRRVGFEVVKKVREALGVVA 284 (287)
T ss_pred --ccCChhHHHHHHHHhcCceeeeeehhccceEE
Confidence 01113468889999999999988766665543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.5e-11 Score=80.16 Aligned_cols=121 Identities=20% Similarity=0.290 Sum_probs=99.1
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
...++.+...+....+.-|||+|.|||.++..++++.-+...++.+|+|++......++. +.+.++.+|+.+
T Consensus 34 s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~--------p~~~ii~gda~~ 105 (194)
T COG3963 34 SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY--------PGVNIINGDAFD 105 (194)
T ss_pred HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--------CCccccccchhh
Confidence 344455666677778889999999999999999988555668999999999999988876 677899999887
Q ss_pred cC-----CCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 100 LP-----FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 100 ~~-----~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
+. .+...||.|+|.-.+-.+|- ..++++.+...|++||.++...+.+.+
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~s 161 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPLS 161 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Confidence 54 44567999999999888864 467899999999999999888777433
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=90.28 Aligned_cols=129 Identities=27% Similarity=0.346 Sum_probs=100.1
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (222)
++.||.+...++......|-+...-....+.+..++|+|||.|.+... .|...+++.|++...+..+++.-
T Consensus 15 h~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~~---- 85 (293)
T KOG1331|consen 15 HSIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRSG---- 85 (293)
T ss_pred HHHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccCC----
Confidence 467888887777777777644332233345588999999999987642 25568999999998888777651
Q ss_pred hhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCccc---HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 84 ~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.......|+..+|+.+.+||.+++..++||+.. ...+++++.+.++|||...+..+..
T Consensus 86 -----~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 86 -----GDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred -----CceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 226788899999998899999999999999953 5789999999999999988766543
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=92.02 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=81.3
Q ss_pred CCeEEEecCCCChhHHHHHH----HhC---CCCcEEEEeCChhHHHHHhcchhh--------------------------
Q 027517 35 GDNVLDVCCGSGDLSFLLSE----QVG---SQGKVIGLDFSKNQLSMASSRQDL-------------------------- 81 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~----~~~---~~~~~~~~D~~~~~~~~~~~~~~~-------------------------- 81 (222)
..+|+..||++|.-...++- ..+ ...+|+|+|+|+.+++.|++-.-.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 46999999999976543332 211 135799999999999999865211
Q ss_pred --hhhhcCCCeeEEeCCCCCcCCC-CCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEE
Q 027517 82 --VSKACYKNIEWVEGDALDLPFS-DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 82 --~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
........|.|.+.|+.+.+.+ .+.||+|+|.+++.|++ ...++++++.+.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0122236788999999875433 46899999999999994 4789999999999999998875
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=89.04 Aligned_cols=96 Identities=22% Similarity=0.459 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC--CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.+.+|||+|||+|.++..+++.+. +..+++++|+++.+++.++++. .++.++..|+...++ +.+||+|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~~~~~~~D~~~~~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PEATWINADALTTEF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cCCEEEEcchhcccc-cCCccEEE
Confidence 367999999999999999887642 2458999999999999999775 468899999887554 45899999
Q ss_pred EcccccCcc--c----------HHHHHHHHhcccCCCcE
Q 027517 112 MGYGLRNVV--D----------KRKALEESFRVLKPGSR 138 (222)
Q Consensus 112 ~~~~l~~~~--~----------~~~~l~~~~~~l~~gG~ 138 (222)
++-.+.... + ...+++...+++++|+.
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 988877432 1 34578888886666664
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-11 Score=87.37 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=70.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHh--------CCCCcEEEEeCChhHHHHHhcchhh------------------------
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV--------GSQGKVIGLDFSKNQLSMASSRQDL------------------------ 81 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~------------------------ 81 (222)
+..+|+..||++|.-...++-.+ +...+++|.|+|+.+++.|++-.-.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999997654332211 1134899999999999999853210
Q ss_pred -hhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEE
Q 027517 82 -VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 82 -~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.......+|.|...|+.+.+.+.+.||+|+|.+++-++.+ ..++++.+.+.|+|||.|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 0122226889999999883334578999999999999954 588999999999999999885
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.4e-11 Score=100.28 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=81.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~ 112 (222)
++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.+++++...+... .++.++++|+.+.. ...++||+|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~-~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSG-RQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-cceEEEEccHHHHHHHcCCCcCEEEE
Confidence 4679999999999999999875 2 2379999999999999999987654311 37899999987632 11467999999
Q ss_pred cccccC-----------cccHHHHHHHHhcccCCCcEEEEEe
Q 027517 113 GYGLRN-----------VVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 113 ~~~l~~-----------~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.-.... ..+...++..+.++|+|||.+++..
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 654211 1234667888899999999997753
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.7e-11 Score=89.79 Aligned_cols=184 Identities=15% Similarity=0.100 Sum_probs=113.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCC---CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeE--EeCCCCCc----CC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGS---QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW--VEGDALDL----PF 102 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~d~~~~----~~ 102 (222)
.+++..++|+|||+|.-+..+++.+.+ ...++++|+|.++++.+.+++... ..+.+.+ +++|..+. +.
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~---~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG---NFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc---cCCCeEEEEEEecHHHHHhhccc
Confidence 356668999999999999988887642 347999999999999999887611 1245555 77777652 21
Q ss_pred --CCCceeEEEE-cccccCccc--HHHHHHHHhc-ccCCCcEEEEE-ecCCCCCc----------hhhHHHHHHhhcccc
Q 027517 103 --SDCFFDAITM-GYGLRNVVD--KRKALEESFR-VLKPGSRISVL-DFNKSTQP----------FTTAIQEWMIDNVVV 165 (222)
Q Consensus 103 --~~~~~D~v~~-~~~l~~~~~--~~~~l~~~~~-~l~~gG~l~i~-~~~~~~~~----------~~~~~~~~~~~~~~~ 165 (222)
......+++. ..++.+++. ...+|+++++ .|+|||.+++. +....... ....+......+...
T Consensus 151 ~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~~~Nr 230 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANE 230 (319)
T ss_pred ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHHHHHH
Confidence 1123455554 457888854 5678999999 99999998773 33322110 111111100000000
Q ss_pred ccccc-CChh----------------------------------HHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 166 PVASG-YGLA----------------------------------EEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 166 ~~~~~-~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
..... +... ...+.+.....+-|+.++++.+++++||++.+.+..
T Consensus 231 ~Lg~~~Fd~~~f~h~a~~n~~~~rie~~l~s~~~~~v~~~~~~f~~GE~I~te~S~Kyt~~~~~~l~~~aG~~~~~~W~d 310 (319)
T TIGR03439 231 ILGSEAFREEDWEFLGEWDEELGRHEAFYIPKKDVSIGLEGVVIRKGEKIRFECSGKYDKDEREKLCQSAGLKVVDVWTN 310 (319)
T ss_pred HhCccccCHHHcEEEEEEcCCCCeEEEEEEeCCcEEEcCceEEEcCCCEEEEEeeeCCCHHHHHHHHHHCCCeeeEEEEC
Confidence 00000 0000 000111112346789999999999999999999999
Q ss_pred cCCeeeeE
Q 027517 211 SGGLMGNL 218 (222)
Q Consensus 211 ~~~~~~~~ 218 (222)
+.+.++++
T Consensus 311 ~~~~f~~~ 318 (319)
T TIGR03439 311 EDGDYGIY 318 (319)
T ss_pred CCCceeee
Confidence 98887765
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=89.39 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=62.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh-hhhcCCCeeEEe-CCCCCcC----CCCCce
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVE-GDALDLP----FSDCFF 107 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~i~~~~-~d~~~~~----~~~~~~ 107 (222)
++.++||||||+|.....++... ++.+++++|+++.+++.|++++... ... .++.+.. .|..++. .+.++|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~--~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLN--GAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCc--CcEEEEEccchhhhhhcccccCCce
Confidence 45799999999998888877664 5679999999999999999998765 232 4677653 3332221 235689
Q ss_pred eEEEEcccccCcc
Q 027517 108 DAITMGYGLRNVV 120 (222)
Q Consensus 108 D~v~~~~~l~~~~ 120 (222)
|+|+|+-.++.-.
T Consensus 191 DlivcNPPf~~s~ 203 (321)
T PRK11727 191 DATLCNPPFHASA 203 (321)
T ss_pred EEEEeCCCCcCcc
Confidence 9999999887553
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=91.83 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=79.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCcee
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFD 108 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D 108 (222)
.++.+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++...+... .+++++++|+.+.. ...++||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~-~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDL-SKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCC-CcEEEEEccHHHHHHHHHhcCCCCC
Confidence 35789999999999998765532 33489999999999999999987654310 26899999987742 1245799
Q ss_pred EEEEcccccCcc---------cHHHHHHHHhcccCCCcEEEEEe
Q 027517 109 AITMGYGLRNVV---------DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 109 ~v~~~~~l~~~~---------~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|++.-....-. +...+++...++|+|||.++...
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 999976642221 23445566789999999998654
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=84.81 Aligned_cols=104 Identities=19% Similarity=0.300 Sum_probs=86.4
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCceeEEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAIT 111 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~ 111 (222)
...+||||||.|.++..+++. +|...++|+|+....+..+.++....+. +|+.+++.|+..+- .++++.|-|+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l---~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGL---KNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCC---CcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 358999999999999999999 5888999999999999999988866553 39999999998742 3445899999
Q ss_pred EcccccCccc--------HHHHHHHHhcccCCCcEEEEE
Q 027517 112 MGYGLRNVVD--------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 112 ~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.++.=-+... ....++.+.+.|+|||.+.+.
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 9887554432 367899999999999999885
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-10 Score=81.84 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=82.7
Q ss_pred HHHHHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 22 WKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 22 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.+..+..++. ..++.+|||+|||+|.++..++... ..+++++|.++++++.+++++...+. .++.++++|+.+.
T Consensus 40 v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~---~~v~~~~~D~~~~ 114 (199)
T PRK10909 40 VRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA---GNARVVNTNALSF 114 (199)
T ss_pred HHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEEchHHHH
Confidence 3344455443 2457799999999999998655442 35899999999999999988766543 4789999998763
Q ss_pred -CCCCCceeEEEEcccccCcccHHHHHHHHhc--ccCCCcEEEEEecC
Q 027517 101 -PFSDCFFDAITMGYGLRNVVDKRKALEESFR--VLKPGSRISVLDFN 145 (222)
Q Consensus 101 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~--~l~~gG~l~i~~~~ 145 (222)
+...++||+|+++-.+.. .-...+++.+.. +++|++.+++....
T Consensus 115 l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 115 LAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 222346999999887432 223445555554 47899988776544
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-09 Score=75.30 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=98.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
..-++|||||+|..+..+++..+++.-+.++|+++.+.+..++.+...+ .+++.++.|+.+--. +++.|+++.+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~----~~~~~V~tdl~~~l~-~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR----VHIDVVRTDLLSGLR-NESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC----CccceeehhHHhhhc-cCCccEEEECC
Confidence 5689999999999999999998888889999999999998777665444 467889999887433 37899999876
Q ss_pred cccCccc---------------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCCh
Q 027517 115 GLRNVVD---------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL 173 (222)
Q Consensus 115 ~l~~~~~---------------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (222)
..-.-++ ..+++..+-.+|.|.|.+++......
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N-------------------------- 172 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN-------------------------- 172 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--------------------------
Confidence 6432221 24566667778888898887644322
Q ss_pred hHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 174 AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
.++++-++++..||..........
T Consensus 173 ---------------~p~ei~k~l~~~g~~~~~~~~Rk~ 196 (209)
T KOG3191|consen 173 ---------------KPKEILKILEKKGYGVRIAMQRKA 196 (209)
T ss_pred ---------------CHHHHHHHHhhcccceeEEEEEec
Confidence 356788899999998765554443
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-11 Score=88.06 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=89.3
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C-C-
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-F- 102 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~- 102 (222)
+..++...+.++|||||+++|..+..++..++++++++.+|.+++..+.|++.+...+.. .+|+++.+++.+. + .
T Consensus 71 L~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~--~~I~~~~G~a~e~L~~l~ 148 (247)
T PLN02589 71 LNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA--HKIDFREGPALPVLDQMI 148 (247)
T ss_pred HHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CceEEEeccHHHHHHHHH
Confidence 333444556779999999999999999988777889999999999999999998776543 6899999998763 2 1
Q ss_pred ----CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 103 ----SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..++||+|+.-.. -......++.+.+.|+|||.+++-.
T Consensus 149 ~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred hccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 1258999998653 2345677888889999999987743
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.4e-10 Score=83.48 Aligned_cols=110 Identities=14% Similarity=0.077 Sum_probs=85.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcC-CCeeEEeCCCCCcC-CCCCcee
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACY-KNIEWVEGDALDLP-FSDCFFD 108 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~-~~~~~~D 108 (222)
+..| ++||-||.|.|..++.+++.. +..+++.+|+++..++.+++.+........ ++++++..|..+.- ...++||
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 3344 699999999999999999984 556899999999999999998865442222 79999999987743 2234799
Q ss_pred EEEEcccccCcc----cHHHHHHHHhcccCCCcEEEEE
Q 027517 109 AITMGYGLRNVV----DKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 109 ~v~~~~~l~~~~----~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+|++...-..=+ -...+++.+++.|+++|.++..
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 999855433111 1278999999999999999876
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=89.89 Aligned_cols=109 Identities=13% Similarity=0.220 Sum_probs=77.1
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SD 104 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~ 104 (222)
+.+++...++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+. .+++++++|+.++.. ..
T Consensus 165 v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l---~~v~~~~~D~~~~~~~~~ 238 (315)
T PRK03522 165 ARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL---TNVQFQALDSTQFATAQG 238 (315)
T ss_pred HHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEcCHHHHHHhcC
Confidence 344444345689999999999999999874 46899999999999999988765443 479999999987532 23
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++||+|+++-.-.-. ...+++. ...++|++.+++.+
T Consensus 239 ~~~D~Vv~dPPr~G~--~~~~~~~-l~~~~~~~ivyvsc 274 (315)
T PRK03522 239 EVPDLVLVNPPRRGI--GKELCDY-LSQMAPRFILYSSC 274 (315)
T ss_pred CCCeEEEECCCCCCc--cHHHHHH-HHHcCCCeEEEEEC
Confidence 469999997542111 1223333 33467777777654
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.4e-10 Score=84.82 Aligned_cols=121 Identities=27% Similarity=0.336 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-C
Q 027517 18 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-D 96 (222)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d 96 (222)
......+.++.+....+|..|||--||||.++....-. +.+++|.|++..|+.-++.++...+. ....+... |
T Consensus 181 ~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i---~~~~~~~~~D 254 (347)
T COG1041 181 MDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGI---EDYPVLKVLD 254 (347)
T ss_pred cCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCc---CceeEEEecc
Confidence 45667788888888999999999999999999877644 67999999999999999999977653 35555555 9
Q ss_pred CCCcCCCCCceeEEEEcccccCcc-----c----HHHHHHHHhcccCCCcEEEEEec
Q 027517 97 ALDLPFSDCFFDAITMGYGLRNVV-----D----KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 97 ~~~~~~~~~~~D~v~~~~~l~~~~-----~----~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+..+|+++.++|.|++-....--. . ...+++.+.++|++||++++..+
T Consensus 255 a~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 255 ATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999998877899999855543221 1 46789999999999999988643
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.8e-10 Score=79.45 Aligned_cols=120 Identities=21% Similarity=0.257 Sum_probs=90.5
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC---CCceeEEEE
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS---DCFFDAITM 112 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~v~~ 112 (222)
.++|||||=+.......... ..|+.||+.+. .-.+.+.|+.+.|.| .++||+|.+
T Consensus 53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns~------------------~~~I~qqDFm~rplp~~~~e~FdvIs~ 110 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ------------------HPGILQQDFMERPLPKNESEKFDVISL 110 (219)
T ss_pred ceEEeecccCCCCcccccCc----eeeEEeecCCC------------------CCCceeeccccCCCCCCcccceeEEEE
Confidence 59999998765544433322 37999999761 335677788886653 568999999
Q ss_pred cccccCcccH---HHHHHHHhcccCCCcE-----EEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhH
Q 027517 113 GYGLRNVVDK---RKALEESFRVLKPGSR-----ISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 184 (222)
Q Consensus 113 ~~~l~~~~~~---~~~l~~~~~~l~~gG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (222)
+.+|.++|++ ..+++++.+.|+|+|. |+++-+.+ .+ .+
T Consensus 111 SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-------Cv---------------------------~N 156 (219)
T PF11968_consen 111 SLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP-------CV---------------------------TN 156 (219)
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch-------Hh---------------------------hc
Confidence 9999999875 5789999999999999 77764331 01 22
Q ss_pred hhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 185 REFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 185 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.++++.+.|..+++.-||..++..+..
T Consensus 157 SRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 157 SRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred ccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 467899999999999999999876544
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-10 Score=89.14 Aligned_cols=110 Identities=20% Similarity=0.345 Sum_probs=80.6
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--- 100 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--- 100 (222)
..+.+.+...++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++++...+. .+++++.+|+.+.
T Consensus 282 ~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~---~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 282 DRALEALELQGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGI---ANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCC---CceEEEeCCHHHHHHH
Confidence 44555556667789999999999999999876 24899999999999999998765443 5899999998752
Q ss_pred -CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+....+||+|++.-.=.-+ ...+++.+.+ ++|++.++++
T Consensus 356 ~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRKGC--AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHhcCCCCCEEEECcCCCCC--CHHHHHHHHh-cCCCEEEEEc
Confidence 1223569999985542111 2455565554 7888877764
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.1e-10 Score=79.10 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=74.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---C-CCCCce
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---P-FSDCFF 107 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~-~~~~~~ 107 (222)
..++.+|||+|||+|-.+..+++.. ...+|+..|.++ .++..+.+..........++.+...|..+. . ....+|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 4567899999999999988888773 456899999988 888888887654422225778888776441 1 234579
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
|+|++.-+++.......+++-+.++++|+|.+++....+
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999999988788899999999999999977766554
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=81.14 Aligned_cols=163 Identities=17% Similarity=0.134 Sum_probs=97.4
Q ss_pred hHHHHHHHHhhCCC-CCCeEEEecCCC--ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC
Q 027517 20 RIWKRMAVSWSGAK-TGDNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 96 (222)
Q Consensus 20 ~~~~~~~~~~~~~~-~~~~vLdiG~G~--G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 96 (222)
+.|....+..+... .-...||||||- ......+++...|.++|.-+|.+|-.+..++..+..... .+..+++.|
T Consensus 53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~---g~t~~v~aD 129 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR---GRTAYVQAD 129 (267)
T ss_dssp HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT---SEEEEEE--
T ss_pred HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC---ccEEEEeCC
Confidence 44444455554444 567899999994 456777888778999999999999999999988765421 137899999
Q ss_pred CCCcC-----------CCCCceeEEEEcccccCcc---cHHHHHHHHhcccCCCcEEEEEecCCCCCchh-hHHHHHHhh
Q 027517 97 ALDLP-----------FSDCFFDAITMGYGLRNVV---DKRKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMID 161 (222)
Q Consensus 97 ~~~~~-----------~~~~~~D~v~~~~~l~~~~---~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~-~~~~~~~~~ 161 (222)
+.+.. +.-...=.+++..++|+++ ++..+++.++..|.||.+|+++..+....+.. ......+..
T Consensus 130 ~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~ 209 (267)
T PF04672_consen 130 LRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQ 209 (267)
T ss_dssp TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHc
Confidence 98731 1112233677888899885 47899999999999999999998887544332 222222221
Q ss_pred cccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEE
Q 027517 162 NVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK 206 (222)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 206 (222)
. ....++.|.+|+.++|. ||++++
T Consensus 210 ~-------------------~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 210 A-------------------GSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp C-------------------CS----B-HHHHHHCCT--TSEE-T
T ss_pred C-------------------CCCceecCHHHHHHHcC--CCccCC
Confidence 1 12235679999999995 998875
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-10 Score=85.02 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=73.1
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+..+...+.+.+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++... .+++.++++|+.
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~ 85 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDAL 85 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccc
Confidence 3455566777777778899999999999999999987 34899999999999999987643 158999999998
Q ss_pred CcCCCCCceeEEEEcccccC
Q 027517 99 DLPFSDCFFDAITMGYGLRN 118 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~ 118 (222)
+++++ .+|.|+++..++.
T Consensus 86 ~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 86 KVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred cCCch--hceEEEEcCCccc
Confidence 87654 4899999877653
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-09 Score=80.45 Aligned_cols=101 Identities=18% Similarity=0.019 Sum_probs=76.1
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCcCCCCCceeE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLPFSDCFFDA 109 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (222)
..+..++||-+|.|.|..++.++++ +. +|+.+|+++++++.+++.+..... -.-++++++.. +.+ ...++||+
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDV 142 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDL 142 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCE
Confidence 3456689999999999999999987 33 999999999999999996644221 11267777652 211 12367999
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
|++-.. ......+.+++.|+|||.++..
T Consensus 143 IIvDs~-----~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 143 IICLQE-----PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEcCC-----CChHHHHHHHHhcCCCcEEEEC
Confidence 998643 2267789999999999999764
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-09 Score=79.01 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=91.0
Q ss_pred hhhHHHHHHHHhhC---CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe
Q 027517 18 QHRIWKRMAVSWSG---AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94 (222)
Q Consensus 18 ~~~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 94 (222)
..+.|.+++.+.+. ...+..+||+|||+|..+..+++.++ .+.++++|.|+.++..+.++..+.... .++.++.
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~--g~i~v~~ 205 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLS--GRIEVIH 205 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhc--CceEEEe
Confidence 34556666665542 23455899999999999999999984 789999999999999999998876654 5777776
Q ss_pred CCCCC-----cCCCCCceeEEEEcccccCccc--------------------------HHHHHHHHhcccCCCcEEEEEe
Q 027517 95 GDALD-----LPFSDCFFDAITMGYGLRNVVD--------------------------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 95 ~d~~~-----~~~~~~~~D~v~~~~~l~~~~~--------------------------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+++. .+...+++|++++|-..-.-.| ...++.-..+.|+|||.+.+..
T Consensus 206 ~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 206 NIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 55543 1234578999999776432221 1245666778999999987754
Q ss_pred cC
Q 027517 144 FN 145 (222)
Q Consensus 144 ~~ 145 (222)
-.
T Consensus 286 ~~ 287 (328)
T KOG2904|consen 286 VE 287 (328)
T ss_pred cc
Confidence 43
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=86.67 Aligned_cols=113 Identities=21% Similarity=0.178 Sum_probs=82.6
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
+..+...-..-.++.|||+|||+|-++...++. + ..+|+++|.|.-+ +.+++.....+.+ ..++++.+.++++.+
T Consensus 49 r~~i~~n~~lf~dK~VlDVGcGtGILS~F~akA-G-A~~V~aVe~S~ia-~~a~~iv~~N~~~--~ii~vi~gkvEdi~L 123 (346)
T KOG1499|consen 49 RNAILQNKHLFKDKTVLDVGCGTGILSMFAAKA-G-ARKVYAVEASSIA-DFARKIVKDNGLE--DVITVIKGKVEDIEL 123 (346)
T ss_pred HHHHhcchhhcCCCEEEEcCCCccHHHHHHHHh-C-cceEEEEechHHH-HHHHHHHHhcCcc--ceEEEeecceEEEec
Confidence 334444334457889999999999999998887 3 3489999987655 8888777655543 468999999999877
Q ss_pred CCCceeEEEEcccccCc---ccHHHHHHHHhcccCCCcEEE
Q 027517 103 SDCFFDAITMGYGLRNV---VDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~l~~gG~l~ 140 (222)
|.+++|+|++-+.-+.+ .-...+|-.=-++|+|||.++
T Consensus 124 P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 124 PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 77889999974432222 234555666667999999886
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.3e-10 Score=77.69 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=65.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
..-.+..|+|+|||||.++...+-. ++ .+|+++|+++++++.++++..... .++.+.+.|+.++. .++|.+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l~----g~v~f~~~dv~~~~---~~~dtv 112 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEELL----GDVEFVVADVSDFR---GKFDTV 112 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhhC----CceEEEEcchhhcC---CccceE
Confidence 3345778999999999999877655 33 489999999999999999987633 58999999999874 568999
Q ss_pred EEcccccCc
Q 027517 111 TMGYGLRNV 119 (222)
Q Consensus 111 ~~~~~l~~~ 119 (222)
++|-.+...
T Consensus 113 imNPPFG~~ 121 (198)
T COG2263 113 IMNPPFGSQ 121 (198)
T ss_pred EECCCCccc
Confidence 998877644
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=83.32 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=79.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCc-CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDL-PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~-~~~~~~~D~v 110 (222)
+...+||.+|+|.|..+..+++. .+..+++.+|+++++++.+++.+..... -..++++++.+|.... ....++||+|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 34579999999999999988876 3445899999999999999988743211 0126899999998773 3345689999
Q ss_pred EEcccccC--c-cc---HHHHHH-HHhcccCCCcEEEEE
Q 027517 111 TMGYGLRN--V-VD---KRKALE-ESFRVLKPGSRISVL 142 (222)
Q Consensus 111 ~~~~~l~~--~-~~---~~~~l~-~~~~~l~~gG~l~i~ 142 (222)
++-..-.. - +. ...+++ .+++.|+|||.+++.
T Consensus 181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 98632100 0 10 245677 899999999998764
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.4e-10 Score=78.28 Aligned_cols=114 Identities=25% Similarity=0.318 Sum_probs=85.3
Q ss_pred HHHHHhhC--CCCCCeEEEecCCCChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhh-----h--hcCCCeeEE
Q 027517 24 RMAVSWSG--AKTGDNVLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVS-----K--ACYKNIEWV 93 (222)
Q Consensus 24 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~-----~--~~~~~i~~~ 93 (222)
..+++.+. ..|+.+.||+|+|+|.++..++..++..+. ..|||.-++.++.+++++.... . -...++.+.
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 34455554 689999999999999999999877755443 4999999999999998876533 1 112567888
Q ss_pred eCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 94 EGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 94 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+|....-....+||.|.+...... .-+++...|++||.+++-.
T Consensus 150 vGDgr~g~~e~a~YDaIhvGAaa~~------~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 150 VGDGRKGYAEQAPYDAIHVGAAASE------LPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eCCccccCCccCCcceEEEccCccc------cHHHHHHhhccCCeEEEee
Confidence 9998876555678999999865433 3345677789999998743
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.1e-10 Score=84.46 Aligned_cols=89 Identities=24% Similarity=0.305 Sum_probs=69.7
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
......+++.+...++.+|||+|||+|.++..+++.. .+++++|+++++++.++++... ++++++++|+.+
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~ 98 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE------DNLTIIEGDALK 98 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc------CceEEEEChhhc
Confidence 3444566677777788899999999999999999873 3899999999999999876531 489999999998
Q ss_pred cCCCCCceeEEEEccccc
Q 027517 100 LPFSDCFFDAITMGYGLR 117 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~ 117 (222)
+++++-.+|.|+++...+
T Consensus 99 ~~~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 99 VDLSELQPLKVVANLPYN 116 (272)
T ss_pred CCHHHcCcceEEEeCCcc
Confidence 765432258888876543
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.6e-10 Score=84.72 Aligned_cols=91 Identities=24% Similarity=0.317 Sum_probs=72.4
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+...+++.....++.+|||||||+|.++..+++. ..+++++|+++.+++.+++++...+. ..+++++.+|+.+
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~--~~~v~ii~~Dal~ 96 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPL--ASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCC--CCcEEEEECCHhh
Confidence 345566777777788899999999999999999876 35899999999999999988754321 2589999999988
Q ss_pred cCCCCCceeEEEEccccc
Q 027517 100 LPFSDCFFDAITMGYGLR 117 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~ 117 (222)
.+. .+||.|+++..++
T Consensus 97 ~~~--~~~d~VvaNlPY~ 112 (294)
T PTZ00338 97 TEF--PYFDVCVANVPYQ 112 (294)
T ss_pred hcc--cccCEEEecCCcc
Confidence 654 3589999876654
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=86.96 Aligned_cols=103 Identities=21% Similarity=0.250 Sum_probs=73.5
Q ss_pred CCeEEEecCCCChhHHHHHHHh---CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
+..|+|+|||+|-++...++.. +...+|+++|-++.+....+++....+.+ .+|+++.+|+++...+ .++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~--~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG--DKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT--TTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC--CeEEEEeCcccCCCCC-CceeEEE
Confidence 5689999999999987665541 22458999999998887776664444433 6899999999998765 5899999
Q ss_pred Ec--ccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 112 MG--YGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 112 ~~--~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
+= +++..-+-....|....+.|||||+++
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 72 222222334567889999999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-09 Score=76.28 Aligned_cols=114 Identities=27% Similarity=0.346 Sum_probs=82.5
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCc---------EEEEeCChhHHHHHhcchhhhhhhcCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGK---------VIGLDFSKNQLSMASSRQDLVSKACYKN 89 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~---------~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 89 (222)
.......++......++..|||.-||+|.+....+... .... ++|.|+++++++.+++++...+.. ..
T Consensus 13 ~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~--~~ 89 (179)
T PF01170_consen 13 RPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE--DY 89 (179)
T ss_dssp -HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C--GG
T ss_pred CHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcccC--Cc
Confidence 34555667777778888999999999999998776664 3334 899999999999999998765543 46
Q ss_pred eeEEeCCCCCcCCCCCceeEEEEcccccCccc--------HHHHHHHHhcccCC
Q 027517 90 IEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--------KRKALEESFRVLKP 135 (222)
Q Consensus 90 i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~l~~ 135 (222)
+.+.+.|+.++++.++++|.|+++..+..-.. ...+++++.+++++
T Consensus 90 i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 90 IDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred eEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 88999999998866678999999888775421 24668888999998
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-09 Score=85.19 Aligned_cols=112 Identities=20% Similarity=0.311 Sum_probs=87.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCceeE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDA 109 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~ 109 (222)
...++.+|||++||+|.-+.+++..++..+.+++.|+++.-++..++++.+.+. .++.+...|...+. .....||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhchhhcCe
Confidence 567889999999999999999999987777999999999999999998877654 57888888887653 22357999
Q ss_pred EEEccc------ccCccc----------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 110 ITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 110 v~~~~~------l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|++-.. +..-++ ..++|....+.|||||+|+-++-+
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 994222 222121 257899999999999998765544
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-09 Score=77.97 Aligned_cols=106 Identities=21% Similarity=0.281 Sum_probs=66.8
Q ss_pred CCeEEEecCCCChh-HHHHHHHhCCCCcEEEEeCChhHHHHHhcchh-hhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 35 GDNVLDVCCGSGDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD-LVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 35 ~~~vLdiG~G~G~~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
+.+|+=||||+=-+ +..+++....+..++++|+++++.+.+++... ..+.+ .++.++.+|..+....-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~--~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS--KRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH---SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc--CCeEEEecchhccccccccCCEEEE
Confidence 35999999997544 55666555566789999999999999998766 22322 6899999998876544467999998
Q ss_pred cccccCc-ccHHHHHHHHhcccCCCcEEEEE
Q 027517 113 GYGLRNV-VDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 113 ~~~l~~~-~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.....-- .+..++++++.+.++||..+++-
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 6654422 46789999999999999998774
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.2e-09 Score=79.16 Aligned_cols=89 Identities=22% Similarity=0.302 Sum_probs=70.1
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+..+...+++.+...++.+|||+|||+|.++..+++.. ..++++|+++.+++.++++... .+++.++.+|+.
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~ 85 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDAL 85 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchh
Confidence 34555667777777788899999999999999999873 3699999999999999877632 158999999998
Q ss_pred CcCCCCCcee---EEEEccccc
Q 027517 99 DLPFSDCFFD---AITMGYGLR 117 (222)
Q Consensus 99 ~~~~~~~~~D---~v~~~~~l~ 117 (222)
+.+++ ++| .|+++..++
T Consensus 86 ~~~~~--~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 86 KVDLP--DFPKQLKVVSNLPYN 105 (253)
T ss_pred cCChh--HcCCcceEEEcCChh
Confidence 87654 466 777766543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-08 Score=72.86 Aligned_cols=103 Identities=27% Similarity=0.276 Sum_probs=75.2
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChh----HHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN----QLSMASSRQDLVSKACYKNIEWVEGDALDLP--- 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 101 (222)
.+...++.+||-+|+++|....+++...++.+.|+++++|+. .++.|+++ +|+..+..|+....
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---------~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---------PNIIPILEDARHPEKYR 138 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---------TTEEEEES-TTSGGGGT
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---------CceeeeeccCCChHHhh
Confidence 356788999999999999999999999988889999999994 45555555 69999999998632
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.--+.+|+|++.-+ ...+...++.+....||+||.+++.
T Consensus 139 ~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 139 MLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 11247999998543 2233456678888899999998875
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-09 Score=79.21 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=80.8
Q ss_pred CCeEEEecCCCChhHH----HHHHHhC----CCCcEEEEeCChhHHHHHhcchhh-------h-----------------
Q 027517 35 GDNVLDVCCGSGDLSF----LLSEQVG----SQGKVIGLDFSKNQLSMASSRQDL-------V----------------- 82 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~----~l~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~-------~----------------- 82 (222)
.-+|...||++|.-.. .+.+.++ ...+|++.|+|..+++.|+.-.-. .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5699999999996543 3334432 146899999999999998853221 0
Q ss_pred --hhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEe
Q 027517 83 --SKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 83 --~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.......|.|...|+.+.+...+.||+|+|.+++-++. ...++++.++..|+|||.|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 01112467788888877553446799999999999995 46889999999999999999853
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.6e-09 Score=75.83 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=59.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCee-EEeCCCCC-----cCCCCCc
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIE-WVEGDALD-----LPFSDCF 106 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~-----~~~~~~~ 106 (222)
.++.+|||+|||+|.++..+++. + ..+|+++|+++.++....+.- +++. +...|+.. +...-..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~--------~~v~~~~~~ni~~~~~~~~~~d~~~ 143 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD--------ERVKVLERTNIRYVTPADIFPDFAT 143 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC--------CCeeEeecCCcccCCHhHcCCCcee
Confidence 36779999999999999999976 2 348999999998887632221 2322 22333332 2211235
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+|+++++.. .++..+.+.|+| |.+++.
T Consensus 144 ~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 144 FDVSFISLI--------SILPELDLLLNP-NDLTLL 170 (228)
T ss_pred eeEEEeehH--------hHHHHHHHHhCc-CeEEEE
Confidence 787776553 347788889999 766543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8e-09 Score=68.71 Aligned_cols=107 Identities=11% Similarity=0.009 Sum_probs=75.1
Q ss_pred HHHHHhhCCCCCCeEEEecCCCCh-hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
..+.+.+...++.+|+|+|||+|. .+..|.+. +.+|+++|+++..++.++++ .+.++..|+.+...
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCH
Confidence 344454544556799999999996 66666643 67999999999999888765 46889999988543
Q ss_pred C-CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 103 S-DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 103 ~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
. -+.+|+|++.. ..++....+.++.+ +-|.-+++..+....
T Consensus 73 ~~y~~a~liysir---pp~el~~~~~~la~--~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 73 EIYKNAKLIYSIR---PPRDLQPFILELAK--KINVPLIIKPLSGEE 114 (134)
T ss_pred HHHhcCCEEEEeC---CCHHHHHHHHHHHH--HcCCCEEEEcCCCCC
Confidence 2 35689999854 33455555666665 335667777666543
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=84.13 Aligned_cols=108 Identities=10% Similarity=0.202 Sum_probs=78.3
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCC
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDC 105 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~ 105 (222)
..++...++.+|||++||+|.++..++.. +.+++++|+++.+++.++++....+. .+++++.+|+.+... ...
T Consensus 226 ~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~---~~~~~~~~d~~~~~~~~~~ 299 (374)
T TIGR02085 226 RQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGL---DNLSFAALDSAKFATAQMS 299 (374)
T ss_pred HHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHHHhcCC
Confidence 33433345679999999999999998854 45899999999999999998865543 479999999876421 124
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+||+|++.-.-... ...+++.+. .++|++.+++.+
T Consensus 300 ~~D~vi~DPPr~G~--~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 300 APELVLVNPPRRGI--GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCEEEECCCCCCC--cHHHHHHHH-hcCCCeEEEEEe
Confidence 59999997653221 244555554 478988888764
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=79.80 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCChhHH-HHHHHhCCCCcEEEEeCChhHHHHHhcchhhh-------------------------hhhcC
Q 027517 34 TGDNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-------------------------SKACY 87 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-------------------------~~~~~ 87 (222)
++.++||||||+--+.. .+++. -.+++..|+++...+..++-+... ....+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~---f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW---FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT---EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh---hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 46699999999854432 22222 237999999887766433221110 00111
Q ss_pred CCe-eEEeCCCCCcC-CCC-----CceeEEEEcccccCc----ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHH
Q 027517 88 KNI-EWVEGDALDLP-FSD-----CFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 156 (222)
Q Consensus 88 ~~i-~~~~~d~~~~~-~~~-----~~~D~v~~~~~l~~~----~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~ 156 (222)
..| .++..|+.+.+ +.. ++||+|++.+.++.. ++..++++++.++|||||.|++...-.... +..
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~-Y~v--- 208 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY-YMV--- 208 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE-EEE---
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee-EEE---
Confidence 234 36678887643 221 359999999998866 345788999999999999999876543221 000
Q ss_pred HHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEee
Q 027517 157 EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 209 (222)
+... ...-.++.+.+++.++++||.+.+...
T Consensus 209 ------------G~~~----------F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 209 ------------GGHK----------FPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ------------TTEE----------EE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ------------CCEe----------cccccCCHHHHHHHHHHcCCEEEeccc
Confidence 0000 001246889999999999999998874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=74.44 Aligned_cols=108 Identities=20% Similarity=0.266 Sum_probs=90.9
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..++..+...|+.+|+|-|.|+|.++..+++.++|.++++.+|+...-.+.+++.+...+.+ .++.+...|+....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~--~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG--DNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC--cceEEEEeecccCCcc
Confidence 35667778899999999999999999999999999999999999998888888888766654 7899999999875543
Q ss_pred --CCceeEEEEcccccCcccHHHHHHHHhcccCCCcE
Q 027517 104 --DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSR 138 (222)
Q Consensus 104 --~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~ 138 (222)
...+|.|+. .+|.+-.++-.++++||.+|.
T Consensus 173 ~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGG 204 (314)
T ss_pred ccccccceEEE-----cCCChhhhhhhhHHHhhhcCc
Confidence 456899988 667777778888889998875
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-09 Score=79.12 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=80.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCc-CCCCC-cee
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDL-PFSDC-FFD 108 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~-~~~~~-~~D 108 (222)
.++..+||-||.|.|..+..+.+. .+..+++.+|+++..++.+++.+..... ...++++++..|.... ....+ +||
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCCcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 346779999999999999999876 3446899999999999999998754321 1226899999998763 22234 899
Q ss_pred EEEEcccccCccc----HHHHHHHHhcccCCCcEEEEEe
Q 027517 109 AITMGYGLRNVVD----KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 109 ~v~~~~~l~~~~~----~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|+.-..-...+. ....++.+++.|+|||.+++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9997443211111 2688999999999999998765
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=77.34 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
...+|||+|||+|..+..+.+.++...+++++|.|+.+++.++......... ...........+. .+..+.|+|++.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~-~~~~~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN--RNAEWRRVLYRDF-LPFPPDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc--ccchhhhhhhccc-ccCCCCcEEEEe
Confidence 4569999999999988888877764458999999999999988876543211 1111111111111 111234999999
Q ss_pred ccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCC
Q 027517 114 YGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQ 149 (222)
Q Consensus 114 ~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~ 149 (222)
++|..+++ ...+++.+++.+.+ .|+++|+..+.+
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 99998865 45667777776655 999999887654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.9e-09 Score=85.98 Aligned_cols=105 Identities=11% Similarity=0.095 Sum_probs=84.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~ 111 (222)
.+..+||||||.|.++..+++. .|...++|+|++...+..+..+....+ ..|+.+++.|+..+ .+++.++|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~-~p~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM-NPDALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 4568999999999999999999 588899999999998888777654433 25888888887543 25677899999
Q ss_pred EcccccCccc--------HHHHHHHHhcccCCCcEEEEE
Q 027517 112 MGYGLRNVVD--------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 112 ~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.++.--|... ....++.+.+.|+|||.+.+.
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 9887555432 267899999999999999875
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=80.51 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=88.9
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
++.-++.+.... .+++||++-|=||.++.+.+.. ++ +++.+|.|..+++.++++..-++... .++.++++|+
T Consensus 205 qR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~-~~~~~i~~Dv 277 (393)
T COG1092 205 QRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDG-DRHRFIVGDV 277 (393)
T ss_pred hHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCc-cceeeehhhH
Confidence 344444444443 3889999999999999998864 44 89999999999999999987655322 4678999998
Q ss_pred CCc----CCCCCceeEEEEcccc---------cCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 98 LDL----PFSDCFFDAITMGYGL---------RNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 98 ~~~----~~~~~~~D~v~~~~~l---------~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.+. .....+||+|++--.= .-..+...++..+.++|+|||.+++..-.
T Consensus 278 f~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 278 FKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 874 2234589999973331 11124578899999999999999886544
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-09 Score=80.36 Aligned_cols=93 Identities=20% Similarity=0.311 Sum_probs=74.2
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+...+++.+...++..++|++||.|..+..+++.+++.++|+|+|.++++++.+++++.. ..++.++++|+.++.
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLK 81 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHH
Confidence 445667777777888999999999999999999976568999999999999999988754 158999999988753
Q ss_pred --CCC--CceeEEEEcccccCc
Q 027517 102 --FSD--CFFDAITMGYGLRNV 119 (222)
Q Consensus 102 --~~~--~~~D~v~~~~~l~~~ 119 (222)
.+. .++|.|++......+
T Consensus 82 ~~l~~~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 82 EVLAEGLGKVDGILLDLGVSSP 103 (296)
T ss_pred HHHHcCCCccCEEEECCCcccc
Confidence 111 279999986665543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-09 Score=69.70 Aligned_cols=88 Identities=23% Similarity=0.372 Sum_probs=70.0
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
+....+.-.+++++|+|||.|-++..+.- .....|.|+|+++++++.+.+++.... -++.+.+.|+.++.+..+
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm--~~~e~vlGfDIdpeALEIf~rNaeEfE----vqidlLqcdildle~~~g 113 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSM--PKNESVLGFDIDPEALEIFTRNAEEFE----VQIDLLQCDILDLELKGG 113 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHhhc--CCCceEEeeecCHHHHHHHhhchHHhh----hhhheeeeeccchhccCC
Confidence 34444555788999999999999955442 234579999999999999999987655 467899999999877778
Q ss_pred ceeEEEEcccccCc
Q 027517 106 FFDAITMGYGLRNV 119 (222)
Q Consensus 106 ~~D~v~~~~~l~~~ 119 (222)
.||.++.+..+..-
T Consensus 114 ~fDtaviNppFGTk 127 (185)
T KOG3420|consen 114 IFDTAVINPPFGTK 127 (185)
T ss_pred eEeeEEecCCCCcc
Confidence 89999998877644
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.91 E-value=9e-08 Score=71.53 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=100.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh------------------------------hh
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL------------------------------VS 83 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~------------------------------~~ 83 (222)
...+||--|||.|+++..++.. +..+.+.|.|--|+-...--+.. .+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3569999999999999999976 67999999998875443321110 00
Q ss_pred -------hhcCCCeeEEeCCCCCcCCCC---CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhh
Q 027517 84 -------KACYKNIEWVEGDALDLPFSD---CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 153 (222)
Q Consensus 84 -------~~~~~~i~~~~~d~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~ 153 (222)
.....++....+|+.+.-.++ ++||+|++++.+..-++....++.+.++|||||..+=..+-.-..
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~---- 208 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHF---- 208 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccC----
Confidence 111246677777877754333 689999999888888889999999999999999665332211000
Q ss_pred HHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEee
Q 027517 154 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 209 (222)
... - ......--+|.+|+..+.+..||++++...
T Consensus 209 --~~~-----~---------------~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 --EPM-----S---------------IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred --CCC-----C---------------CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000 0 000001246889999999999999987665
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=73.34 Aligned_cols=100 Identities=25% Similarity=0.404 Sum_probs=71.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++..|+|+.||-|.++..+++. .+...|+++|++|.+++..+++....+.. .++..+++|..++.. ...+|.|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~--~~i~~~~~D~~~~~~-~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVE--NRIEVINGDAREFLP-EGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-T--TTEEEEES-GGG----TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCC--CeEEEEcCCHHHhcC-ccccCEEE
Confidence 467889999999999999999985 35568999999999999999988776554 578899999988754 57899999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
++..-. ...++....+++++||.+
T Consensus 175 m~lp~~----~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 175 MNLPES----SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp E--TSS----GGGGHHHHHHHEEEEEEE
T ss_pred ECChHH----HHHHHHHHHHHhcCCcEE
Confidence 966422 234677788888888875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.7e-08 Score=70.02 Aligned_cols=119 Identities=19% Similarity=0.160 Sum_probs=79.7
Q ss_pred hHHHHHHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 20 RIWKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
...+..+...+. .-++.+|||++||+|.++..++.+ +. .+++++|.++.+++.+++++...+.. .++++++.|+.
T Consensus 34 ~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~sr-ga-~~v~~vE~~~~a~~~~~~N~~~~~~~--~~~~~~~~D~~ 109 (189)
T TIGR00095 34 RVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSR-GA-KVAFLEEDDRKANQTLKENLALLKSG--EQAEVVRNSAL 109 (189)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCc--ccEEEEehhHH
Confidence 333344444432 235789999999999999999876 22 38999999999999999988765432 46889999985
Q ss_pred Cc-C-C-C-CCceeEEEEcccccCcccHHHHHHHH--hcccCCCcEEEEEe
Q 027517 99 DL-P-F-S-DCFFDAITMGYGLRNVVDKRKALEES--FRVLKPGSRISVLD 143 (222)
Q Consensus 99 ~~-~-~-~-~~~~D~v~~~~~l~~~~~~~~~l~~~--~~~l~~gG~l~i~~ 143 (222)
+. . . . ...||+|+..-.+.. .....++..+ ..+++++|.+++..
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHHHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 52 2 1 1 224788887665543 2234444444 34688888776543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-10 Score=80.26 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=71.0
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
+.++||+|+|.|..+.+++..+ .+|++.+.|..|..+.+++ +..++. ..+....+-+||+|.|.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk----------~ynVl~--~~ew~~t~~k~dli~clN 177 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK----------NYNVLT--EIEWLQTDVKLDLILCLN 177 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc----------CCceee--ehhhhhcCceeehHHHHH
Confidence 4699999999999999998664 3799999999998887765 222221 112111234699999999
Q ss_pred cccCcccHHHHHHHHhcccCC-CcEEEE
Q 027517 115 GLRNVVDKRKALEESFRVLKP-GSRISV 141 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~-gG~l~i 141 (222)
.+..--++-++++.++.+|+| +|++++
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 998888889999999999999 887765
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-08 Score=79.67 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=82.0
Q ss_pred HHHHHhhCCC-CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 24 RMAVSWSGAK-TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 24 ~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
..+.+.+... ++.+|||++||+|..+..++...+ ..+|+++|+++.+++.+++++...+. .++.+.+.|+..+..
T Consensus 46 ~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~---~~~~v~~~Da~~~l~ 121 (382)
T PRK04338 46 VLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL---ENEKVFNKDANALLH 121 (382)
T ss_pred HHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC---CceEEEhhhHHHHHh
Confidence 3444444322 346899999999999999988743 34899999999999999998865543 356788899876422
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
..++||+|++.-. ..+..++....+.+++||.++++
T Consensus 122 ~~~~fD~V~lDP~----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 122 EERKFDVVDIDPF----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred hcCCCCEEEECCC----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 1356999999542 33456777767778999999997
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.5e-08 Score=68.33 Aligned_cols=115 Identities=23% Similarity=0.236 Sum_probs=85.4
Q ss_pred hhHHHHHHHHhh----CCCCCC-eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE
Q 027517 19 HRIWKRMAVSWS----GAKTGD-NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 93 (222)
Q Consensus 19 ~~~~~~~~~~~~----~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (222)
.+.|.+++++-+ ..+... +++|+|+|.|.-...++=.. |..+++.+|....-....+.-....+. .|++++
T Consensus 28 ~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~ 103 (184)
T PF02527_consen 28 EEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL---SNVEVI 103 (184)
T ss_dssp HHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEE
Confidence 456666665533 122222 89999999999998888775 778999999999877777766665554 589999
Q ss_pred eCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 94 EGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 94 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+..+++ +....+||+|++..+ .+...++.-+...+++||.++..
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARAV----APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred Eeeecc-cccCCCccEEEeehh----cCHHHHHHHHHHhcCCCCEEEEE
Confidence 999998 434578999999764 45678888899999999998775
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.2e-08 Score=71.03 Aligned_cols=112 Identities=16% Similarity=0.214 Sum_probs=88.4
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc------
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------ 100 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------ 100 (222)
..+++.-..+++||||.=||..+..++..++++++|+++|++++..+.+.+.....+.. ..+.++++.+.+.
T Consensus 66 ~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~--~KI~~i~g~a~esLd~l~~ 143 (237)
T KOG1663|consen 66 QMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD--HKITFIEGPALESLDELLA 143 (237)
T ss_pred HHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc--ceeeeeecchhhhHHHHHh
Confidence 33444556779999999999999999999999999999999999999997766555444 6899999988762
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
....++||.++.-. +-.+.....+++.+++|+||.+++-.
T Consensus 144 ~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 144 DGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred cCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEec
Confidence 12356899999733 22344577899999999999998854
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=71.67 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=84.7
Q ss_pred hHHHHHHHHhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 20 RIWKRMAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 20 ~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
...++.+..++.. -++.+|||+-||+|......+.+ + ..+|+.+|.++..+...++++...+.. .++.++..|.
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-G-A~~v~fVE~~~~a~~~i~~N~~~l~~~--~~~~v~~~d~ 101 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-G-AKSVVFVEKNRKAIKIIKKNLEKLGLE--DKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHT-G--GGEEEEESSH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-C-CCeEEEEECCHHHHHHHHHHHHHhCCC--cceeeeccCH
Confidence 3445556666654 37889999999999999988766 2 248999999999999999998876644 3688888886
Q ss_pred CC-cC---CCCCceeEEEEcccccCcccHHHHHHHHh--cccCCCcEEEEEecCC
Q 027517 98 LD-LP---FSDCFFDAITMGYGLRNVVDKRKALEESF--RVLKPGSRISVLDFNK 146 (222)
Q Consensus 98 ~~-~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~l~~gG~l~i~~~~~ 146 (222)
.. +. ....+||+|++.-....-.....++..+. .+|+++|.+++-....
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 54 21 13578999999776554322466777776 7999999887655443
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-08 Score=73.82 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=72.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
....+.+++.....++..|||||+|.|.++..+++. ..+|+++|+++.+++..+++... ..+++++.+|+..
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk 87 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALK 87 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhc
Confidence 334456677777778899999999999999999987 34799999999999999988652 2699999999999
Q ss_pred cCCCCC-ceeEEEEccccc
Q 027517 100 LPFSDC-FFDAITMGYGLR 117 (222)
Q Consensus 100 ~~~~~~-~~D~v~~~~~l~ 117 (222)
.+++.- .++.|+++-..+
T Consensus 88 ~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 88 FDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred CcchhhcCCCEEEEcCCCc
Confidence 877632 568888876644
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-07 Score=65.73 Aligned_cols=104 Identities=22% Similarity=0.318 Sum_probs=77.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--------CC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------FS 103 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~ 103 (222)
..++.+|+||||.+|.++..+++..+++..|+++|+.|--. .+++.++++|++..+ +.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~--------------~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP--------------IPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc--------------CCCceEEeeeccCccHHHHHHHHcC
Confidence 36788999999999999999999987777899999977321 157999999998742 33
Q ss_pred CCceeEEEEcccc--------cCccc---HHHHHHHHhcccCCCcEEEEEecCCCCC
Q 027517 104 DCFFDAITMGYGL--------RNVVD---KRKALEESFRVLKPGSRISVLDFNKSTQ 149 (222)
Q Consensus 104 ~~~~D~v~~~~~l--------~~~~~---~~~~l~~~~~~l~~gG~l~i~~~~~~~~ 149 (222)
..++|+|++-..- +|... ...+++-...+|+|||.+++-.+.....
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 4457999975543 22211 2456777778999999998877665443
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.1e-08 Score=74.81 Aligned_cols=115 Identities=20% Similarity=0.171 Sum_probs=81.5
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.+.+.+++.-..-.++.|||+|||+|.++-..+.. + ..+|++++- .+|.+.|++..+.. ....+|.++.+-++++
T Consensus 164 TY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqA-G-A~~vYAvEA-S~MAqyA~~Lv~~N--~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 164 TYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQA-G-AKKVYAVEA-SEMAQYARKLVASN--NLADRITVIPGKIEDI 238 (517)
T ss_pred HHHHHHHhcccccCCcEEEEecCCccHHHHHHHHh-C-cceEEEEeh-hHHHHHHHHHHhcC--CccceEEEccCccccc
Confidence 34445555444456789999999999998877765 2 348999996 56888888877654 3347899999999998
Q ss_pred CCCCCceeEEEEcccccCc--ccHHHHHHHHhcccCCCcEEEE
Q 027517 101 PFSDCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~l~~gG~l~i 141 (222)
.+| ++.|++++--.-.-+ +..-...-..+++|+|.|.++-
T Consensus 239 eLP-Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 239 ELP-EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred cCc-hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 876 679999973321111 2223344456799999998863
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-07 Score=72.78 Aligned_cols=119 Identities=24% Similarity=0.331 Sum_probs=89.3
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCC-CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--- 101 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 101 (222)
....+...|+.+|||++++.|.-+.++++.+... ..|+++|.++.-+...++++.+.+. .++.....|....+
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---RNVIVVNKDARRLAELL 224 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---CceEEEecccccccccc
Confidence 3346677899999999999999999999997543 3469999999999999999887765 46788888876543
Q ss_pred CCCCceeEEEE------cccccCccc----------------HHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 102 FSDCFFDAITM------GYGLRNVVD----------------KRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 102 ~~~~~~D~v~~------~~~l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
....+||.|++ .+++..-|+ +.++|....+.|||||.|+-++-+..
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 12235999995 223322222 35789999999999999987665543
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.3e-08 Score=67.56 Aligned_cols=157 Identities=19% Similarity=0.245 Sum_probs=100.2
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHh--cchh-hhhhhcCCCeeEEeCCCCCcCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS--SRQD-LVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~--~~~~-~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
++...+..++.+|+|+=.|.|+++..++...++.+.|+++-..+...-..+ .++. ........|++.+-.+...+.
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~- 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG- 118 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-
Confidence 445567789999999999999999999999988888887754332110000 0000 001111235555555554444
Q ss_pred CCCceeEEEEcccccCc-------ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhH
Q 027517 103 SDCFFDAITMGYGLRNV-------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAE 175 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~-------~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (222)
+.+..|++......|.+ .....+.+.+.+.|||||.+++.+............
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt-------------------- 178 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDT-------------------- 178 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhh--------------------
Confidence 34556777764444433 235788999999999999999988765443211111
Q ss_pred HHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 176 EYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
......+..-+.+..+.+||+.....++
T Consensus 179 -------~~~~ri~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 179 -------ITLHRIDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred -------hhhcccChHHHHHHHHhhcceeeeeehh
Confidence 1123457788899999999998766554
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.3e-08 Score=71.49 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=70.5
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+++-....+.+.|||+|.|||.++..+++. +.+|+++|+++.++....++....+.+ ...+++.+|....+.|
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~--~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKS--GKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCcc--ceeeEEecccccCCCc
Confidence 34455557788999999999999999999976 568999999999999999988765433 6899999999887654
Q ss_pred CCceeEEEEcccc
Q 027517 104 DCFFDAITMGYGL 116 (222)
Q Consensus 104 ~~~~D~v~~~~~l 116 (222)
.||.++++...
T Consensus 123 --~fd~cVsNlPy 133 (315)
T KOG0820|consen 123 --RFDGCVSNLPY 133 (315)
T ss_pred --ccceeeccCCc
Confidence 58999986553
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.5e-08 Score=74.73 Aligned_cols=124 Identities=25% Similarity=0.343 Sum_probs=81.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHh------CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV------GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 93 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (222)
....+.+..++...++.+|+|.+||+|.++..+.+.+ ....+++|+|+++.++..++.++.-.+... .+..+.
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~-~~~~i~ 110 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN-SNINII 110 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC-BGCEEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc-cccccc
Confidence 4455667777777778899999999999998887743 245689999999999998886653322221 234577
Q ss_pred eCCCCCcCC-C-CCceeEEEEcccccCc--cc-------------------HHHHHHHHhcccCCCcEEEEEec
Q 027517 94 EGDALDLPF-S-DCFFDAITMGYGLRNV--VD-------------------KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 94 ~~d~~~~~~-~-~~~~D~v~~~~~l~~~--~~-------------------~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..|....+. . ..+||+|+++-.+... .+ .-.++..+.+.|++||++.++.+
T Consensus 111 ~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 111 QGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp ES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 788665432 2 4689999997775533 10 12578899999999999877643
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.4e-08 Score=75.43 Aligned_cols=109 Identities=12% Similarity=0.138 Sum_probs=74.4
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
...+.++....+ .+|||++||+|.++..+++.. .+|+++|+++++++.++++....+. .++.++.+|+.+...
T Consensus 187 ~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~---~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 187 LEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI---DNVQIIRMSAEEFTQ 259 (353)
T ss_pred HHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEEcCHHHHHH
Confidence 344445444323 479999999999999888763 3899999999999999998765543 478999999876311
Q ss_pred C----------C------CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 103 S----------D------CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~----------~------~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
. . ..||+|++.-.= -.-...+++.+.+ |++.+++.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR--~G~~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 260 AMNGVREFRRLKGIDLKSYNCSTIFVDPPR--AGLDPDTCKLVQA---YERILYISC 311 (353)
T ss_pred HHhhccccccccccccccCCCCEEEECCCC--CCCcHHHHHHHHc---CCcEEEEEc
Confidence 0 1 137999885541 1112445555543 778887754
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-07 Score=71.36 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=78.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh--h--hhhhcCCCeeEEeCCCCCc-CCCCCce
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD--L--VSKACYKNIEWVEGDALDL-PFSDCFF 107 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~--~~~~~~~~i~~~~~d~~~~-~~~~~~~ 107 (222)
+...+||-+|.|.|-..+.+.+. +...+++.+|.+|+|++.++.... . .+.-.-+++.++..|+.+. ....+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 34568999999999999999987 335689999999999999984322 1 1111227899999998874 2334579
Q ss_pred eEEEEcccccCccc-----HHHHHHHHhcccCCCcEEEEEe
Q 027517 108 DAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 108 D~v~~~~~l~~~~~-----~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|.|+....=-.-+. -..+..-+++.|+++|.+++.-
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 99997443211111 1456778889999999998753
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.5e-08 Score=72.82 Aligned_cols=119 Identities=21% Similarity=0.308 Sum_probs=81.5
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
++.-+.++... ..+++|||+-|=||.++.+.+.. ...+|+.+|.|..+++.+++++..++... .++.+++.|+.
T Consensus 111 qR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~-~~~~~~~~Dvf 184 (286)
T PF10672_consen 111 QRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDL-DRHRFIQGDVF 184 (286)
T ss_dssp GHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CC-TCEEEEES-HH
T ss_pred HHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCc-cceEEEecCHH
Confidence 44444455443 35789999999999999987753 22379999999999999999987655321 47899999987
Q ss_pred Cc-C--CCCCceeEEEEccccc---Cc---ccHHHHHHHHhcccCCCcEEEEEe
Q 027517 99 DL-P--FSDCFFDAITMGYGLR---NV---VDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 99 ~~-~--~~~~~~D~v~~~~~l~---~~---~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+. . ...++||+|++--.-. .+ .+...++..+.++|+|||.|+++.
T Consensus 185 ~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 185 KFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp HHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 63 1 1235899999743311 11 245678899999999999987654
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-06 Score=63.05 Aligned_cols=201 Identities=12% Similarity=0.133 Sum_probs=122.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCC---CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ---GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 96 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 96 (222)
..++....+......+...+|+|+|+..-+..+...+.+. .+++.+|+|...+...-+.+....+. -.+.-+++|
T Consensus 64 aIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~--l~v~~l~~~ 141 (321)
T COG4301 64 AILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG--LEVNALCGD 141 (321)
T ss_pred HHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC--CeEeehhhh
Confidence 3344445555556668899999999999999988876442 38999999999887765554433211 134445666
Q ss_pred CCC-c-CCC-CCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEE-ecCCCCC----------chhhHHHHHHh
Q 027517 97 ALD-L-PFS-DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVL-DFNKSTQ----------PFTTAIQEWMI 160 (222)
Q Consensus 97 ~~~-~-~~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~-~~~~~~~----------~~~~~~~~~~~ 160 (222)
.+. + ..+ .+.==.++...++.++. +...++..++..++||-.+++. +...+.. .....+.....
T Consensus 142 ~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~AYdDp~gVTa~FnlNvL 221 (321)
T COG4301 142 YELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEAAYDDPQGVTAEFNLNVL 221 (321)
T ss_pred HHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHHhhcCccchHHHHHHHHH
Confidence 543 1 112 22334455666677773 4678899999999999998874 3322111 11111111111
Q ss_pred hcccccccccCChhH-----HH---------------------------------HHhHHhHhhcCCHHHHHHHHHHcCC
Q 027517 161 DNVVVPVASGYGLAE-----EY---------------------------------QYLKSSIREFLTGKDLEKLALEIGF 202 (222)
Q Consensus 161 ~~~~~~~~~~~~~~~-----~~---------------------------------~~~~~~~~~~~~~~~~~~~l~~~Gf 202 (222)
.+........++... .| +.+-..+.+.++..++..+++.+||
T Consensus 222 a~lNr~f~~nFD~~dfeh~Avyne~~~~iem~L~a~~~qTVr~g~l~ltv~F~age~iLtE~S~Kfslq~irq~laa~gl 301 (321)
T COG4301 222 AHLNRVFGGNFDVDDFEHVAVYNEDEGRIEMYLRAKREQTVRLGALDLTVDFAAGETILTEISRKFSLQAIRQQLAAAGL 301 (321)
T ss_pred HHHHHHhccCCCcchhhhHhhhhhhHHHHHHHhhcCCceEEEecCccceeecCCCceeehhhhhhCCHHHHHHHHHhcCC
Confidence 111111111111100 00 0111124567899999999999999
Q ss_pred eEEEEeeecCCeeeeEeeeC
Q 027517 203 SRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~k 222 (222)
+.+..++.....+++++++|
T Consensus 302 ~~v~~wtd~~qdf~~~l~~v 321 (321)
T COG4301 302 EPVQKWTDAIQDFGLSLAAV 321 (321)
T ss_pred eEeeehhhhhhhhhhheecC
Confidence 99999999988888888865
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-07 Score=73.99 Aligned_cols=108 Identities=14% Similarity=0.196 Sum_probs=74.5
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C-
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P- 101 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~- 101 (222)
..+.+.+... +.+|||++||+|.++..+++.. .+|+++|+++.+++.++++....+. .+++++.+|+.+. +
T Consensus 197 ~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~---~~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 197 EWALDATKGS-KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI---DNVQIIRMSAEEFTQA 269 (362)
T ss_pred HHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEECCHHHHHHH
Confidence 3444444322 3579999999999999888763 3899999999999999998765543 4899999998763 1
Q ss_pred CC--------------CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 102 FS--------------DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 ~~--------------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.. ..+||+|++.-.-. .-...+++.+.+ |++.+++.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~--G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 270 MNGVREFNRLKGIDLKSYNFSTIFVDPPRA--GLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred HhhcccccccccccccCCCCCEEEECCCCC--CCcHHHHHHHHc---cCCEEEEEe
Confidence 10 12589999855521 112455555544 677777754
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-08 Score=79.63 Aligned_cols=95 Identities=26% Similarity=0.328 Sum_probs=67.8
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEe-----CChhHHHHHhcchhhhhhhcCCCeeEEeC--CCCCcCCCCCcee
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD-----FSKNQLSMASSRQDLVSKACYKNIEWVEG--DALDLPFSDCFFD 108 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~D 108 (222)
..+||+|||.|.++.+|.++ .|+.+- ..+..++.|.++ .+-...+ ....+|++++.||
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleR----------Gvpa~~~~~~s~rLPfp~~~fD 183 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALER----------GVPAMIGVLGSQRLPFPSNAFD 183 (506)
T ss_pred EEEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhc----------CcchhhhhhccccccCCccchh
Confidence 47899999999999999966 344443 333455555544 1222222 2346899999999
Q ss_pred EEEEcccccCc-ccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 109 AITMGYGLRNV-VDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 109 ~v~~~~~l~~~-~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+|-|...+..+ ++-...|-++.|+|+|||+++.+.+.
T Consensus 184 mvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 184 MVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhhcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence 99988877666 44467899999999999999886543
|
; GO: 0008168 methyltransferase activity |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-06 Score=61.37 Aligned_cols=105 Identities=20% Similarity=0.157 Sum_probs=77.0
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCc
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCF 106 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~ 106 (222)
++..++++||-+|+.+|....+++.-.+ .+.++++++|+............. +|+..+..|+.... .--+.
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~ 145 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEK 145 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhccc
Confidence 4678999999999999999999999875 678999999997654443333221 68999999987632 11245
Q ss_pred eeEEEEcccccCccc-HHHHHHHHhcccCCCcEEEEEe
Q 027517 107 FDAITMGYGLRNVVD-KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~-~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.|+|+.--+ -++ ...+..+....||+||.+++.-
T Consensus 146 VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 146 VDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred ccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 899887321 133 3456778889999999876643
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=71.05 Aligned_cols=117 Identities=24% Similarity=0.403 Sum_probs=89.1
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FS 103 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~ 103 (222)
....+...++.+|||++++.|.-+.++++.++..+.+++.|+++.-+...+.+..+.+. .++.....|..... ..
T Consensus 77 ~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~---~~v~~~~~D~~~~~~~~~ 153 (283)
T PF01189_consen 77 VALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV---FNVIVINADARKLDPKKP 153 (283)
T ss_dssp HHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHHHHHH
T ss_pred ccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC---ceEEEEeecccccccccc
Confidence 33456678899999999999999999999987678999999999999999988877654 57888877776642 22
Q ss_pred CCceeEEEEcc------cccCccc----------------HHHHHHHHhccc----CCCcEEEEEecC
Q 027517 104 DCFFDAITMGY------GLRNVVD----------------KRKALEESFRVL----KPGSRISVLDFN 145 (222)
Q Consensus 104 ~~~~D~v~~~~------~l~~~~~----------------~~~~l~~~~~~l----~~gG~l~i~~~~ 145 (222)
...||.|+.-. ++..-++ ..++|+...+.+ ||||+++-++-+
T Consensus 154 ~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 154 ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 34699999522 2332232 257899999999 999998776533
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.5e-07 Score=63.88 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHhhC---CCC--CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeE
Q 027517 18 QHRIWKRMAVSWSG---AKT--GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92 (222)
Q Consensus 18 ~~~~~~~~~~~~~~---~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (222)
..+.|.+++++-+. ..+ +.+++|||+|.|.-...++=. .|+.+++.+|....-+...+......+. +|+++
T Consensus 46 ~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv~i 121 (215)
T COG0357 46 PEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGL---ENVEI 121 (215)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCC---CCeEE
Confidence 45778787776442 222 579999999999999888744 4677899999988777666665554443 68999
Q ss_pred EeCCCCCcCCCCCc-eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 93 VEGDALDLPFSDCF-FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 93 ~~~d~~~~~~~~~~-~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
+++.++++... .. ||+|++..+ .+...+..-+...+++||.++.
T Consensus 122 ~~~RaE~~~~~-~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 122 VHGRAEEFGQE-KKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ehhhHhhcccc-cccCcEEEeehc----cchHHHHHHHHHhcccCCcchh
Confidence 99999987532 23 999999664 3456677778889999998754
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.2e-07 Score=71.94 Aligned_cols=115 Identities=23% Similarity=0.355 Sum_probs=86.6
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
...+...+.+++...++.++||+=||.|.++..+++. ..+|+|+|+++++++.|+++++.++. .|+++..++++
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i---~N~~f~~~~ae 351 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGI---DNVEFIAGDAE 351 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEeCCHH
Confidence 4556677788888888889999999999999999965 45999999999999999999977665 57999999998
Q ss_pred CcCCC---CCceeEEEEcccccCcccH-HHHHHHHhcccCCCcEEEEEe
Q 027517 99 DLPFS---DCFFDAITMGYGLRNVVDK-RKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 99 ~~~~~---~~~~D~v~~~~~l~~~~~~-~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++... ...+|.|+..-.= .-. ..+++.+. .++|..++++++
T Consensus 352 ~~~~~~~~~~~~d~VvvDPPR---~G~~~~~lk~l~-~~~p~~IvYVSC 396 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDPPR---AGADREVLKQLA-KLKPKRIVYVSC 396 (432)
T ss_pred HHhhhccccCCCCEEEECCCC---CCCCHHHHHHHH-hcCCCcEEEEeC
Confidence 86432 2468999983211 111 24444444 456777888764
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=68.44 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=69.7
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh------hhcCCCeeEEeCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS------KACYKNIEWVEGDA 97 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~d~ 97 (222)
..+++.++..+++..+|||||.|......+... +-.+++|||+.+...+.++....... .....++.+..+|+
T Consensus 32 ~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 345566778889999999999999988777664 22359999999998887775443221 01124678888998
Q ss_pred CCcCCC---CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 98 LDLPFS---DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 98 ~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
.+.+.. -...|+|++++... -++....|.+....||+|.+++-
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 764321 13479999988653 24556666777788999887754
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.6e-08 Score=74.62 Aligned_cols=111 Identities=27% Similarity=0.335 Sum_probs=92.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
...++.+++|+|||-|..+..+... ....++|+|.++..+..+.......... ..-.+...|+.+.++++..||.+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~--~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLD--NKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhh--hhcceehhhhhcCCCCccccCcE
Confidence 3456778999999999999988876 3568999999998888887776544433 23344778888888888999999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.+..+..|.++...++++++++++|||..+..++.
T Consensus 183 ~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 183 RFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred EEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 99999999999999999999999999999886654
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.1e-06 Score=66.35 Aligned_cols=108 Identities=24% Similarity=0.327 Sum_probs=85.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.+|..|+|.=||-|.++..+++.- . .+|+++|++|.+++..++++..++.. ..+..+++|+.+.....+.+|-|++
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~-~~V~A~diNP~A~~~L~eNi~LN~v~--~~v~~i~gD~rev~~~~~~aDrIim 262 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-R-PKVYAIDINPDAVEYLKENIRLNKVE--GRVEPILGDAREVAPELGVADRIIM 262 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-C-ceEEEEecCHHHHHHHHHHHHhcCcc--ceeeEEeccHHHhhhccccCCEEEe
Confidence 448899999999999999999872 2 24999999999999999998766654 3489999999987654467999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
+..- .....+....+.+++||.+-..+.....
T Consensus 263 ~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 263 GLPK----SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred CCCC----cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 7753 3355667777788889998877666543
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.4e-08 Score=69.95 Aligned_cols=99 Identities=24% Similarity=0.369 Sum_probs=62.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc------C--C--C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------P--F--S 103 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~--~--~ 103 (222)
++.+|||+||++|.++..+++..++..+++++|+.+.. .. +++..+++|..+. . . .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~--------~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PL--------QNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S---------TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cc--------cceeeeecccchhhHHHhhhhhcccc
Confidence 45899999999999999999885445799999998761 00 3455555555431 1 1 1
Q ss_pred CCceeEEEEcccccCccc-----------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 DCFFDAITMGYGLRNVVD-----------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.+++|+|++-.+.....+ ....+.-+.+.|+|||.+++-.+..
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 258999998774332211 2334555567799999988766553
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.6e-06 Score=59.08 Aligned_cols=106 Identities=38% Similarity=0.591 Sum_probs=73.5
Q ss_pred EEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC--cCCCC-CceeEEEEcc
Q 027517 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LPFSD-CFFDAITMGY 114 (222)
Q Consensus 38 vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~~D~v~~~~ 114 (222)
++|+|||+|... .+.+.......++++|+++.++..++..... ... ..+.+...|... .++.. ..||++.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL--GLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC--CceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 999999999977 4443321123788999999999885544322 110 116777777765 56655 4799994444
Q ss_pred cccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 115 GLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
..++.. ....+.++.+.++|+|.+++.......
T Consensus 128 ~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 128 VLHLLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred ehhcCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444444 788999999999999999888776543
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-06 Score=62.77 Aligned_cols=135 Identities=21% Similarity=0.191 Sum_probs=89.1
Q ss_pred EEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEccccc
Q 027517 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLR 117 (222)
Q Consensus 38 vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 117 (222)
|.||||--|.+...|++. +...+++++|+++..++.|++.....+.. .++++..+|-.+.-.+.+..|.|+..++=.
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~--~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLE--DRIEVRLGDGLEVLKPGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-T--TTEEEEE-SGGGG--GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCc--ccEEEEECCcccccCCCCCCCEEEEecCCH
Confidence 689999999999999987 34447999999999999999999876544 689999999665222223367777654322
Q ss_pred CcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHH
Q 027517 118 NVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLA 197 (222)
Q Consensus 118 ~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (222)
. -...+|+.....++....+++... -....+++.|
T Consensus 78 ~--lI~~ILe~~~~~~~~~~~lILqP~-------------------------------------------~~~~~LR~~L 112 (205)
T PF04816_consen 78 E--LIIEILEAGPEKLSSAKRLILQPN-------------------------------------------THAYELRRWL 112 (205)
T ss_dssp H--HHHHHHHHTGGGGTT--EEEEEES-------------------------------------------S-HHHHHHHH
T ss_pred H--HHHHHHHhhHHHhccCCeEEEeCC-------------------------------------------CChHHHHHHH
Confidence 1 245677777777766667766421 2446889999
Q ss_pred HHcCCeEEEEeeec--CCeeeeEee
Q 027517 198 LEIGFSRAKHYELS--GGLMGNLVA 220 (222)
Q Consensus 198 ~~~Gf~~~~~~~~~--~~~~~~~~~ 220 (222)
.+.||.+++..-.. +..+-++.+
T Consensus 113 ~~~gf~I~~E~lv~e~~~~YeIi~~ 137 (205)
T PF04816_consen 113 YENGFEIIDEDLVEENGRFYEIIVA 137 (205)
T ss_dssp HHTTEEEEEEEEEEETTEEEEEEEE
T ss_pred HHCCCEEEEeEEEeECCEEEEEEEE
Confidence 99999998755443 334445444
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-08 Score=67.38 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=73.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDA 109 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~ 109 (222)
.-.+.+|||+|.|.-.++-.+.....+..+|...|-+++.+...++-..........+......+...- .....+||+
T Consensus 27 ~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 27 KIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred HHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccE
Confidence 334679999999975555444333346678999999999988877654433222222333333332221 123457999
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
|++...+..-+-...+.+.+++.|+|.|..++..+
T Consensus 107 IlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 107 ILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred EEeccchhHHHHHHHHHHHHHHHhCcccceeEecC
Confidence 99877665445567888999999999999666533
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-06 Score=61.32 Aligned_cols=120 Identities=20% Similarity=0.220 Sum_probs=86.8
Q ss_pred hHHHHHHHHhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 20 RIWKRMAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 20 ~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
...+..+..++.. -.+.++||+-+|+|.+....+.+. ..+++.+|.+..+....+++....+.. .+..++..|+
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~--~~~~~~~~da 102 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLE--GEARVLRNDA 102 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCc--cceEEEeecH
Confidence 4455666677754 578899999999999998888662 348999999999999999998776533 5788888888
Q ss_pred CCc-C-CC-CCceeEEEEcccccC-cccHHHHHHH--HhcccCCCcEEEEEe
Q 027517 98 LDL-P-FS-DCFFDAITMGYGLRN-VVDKRKALEE--SFRVLKPGSRISVLD 143 (222)
Q Consensus 98 ~~~-~-~~-~~~~D~v~~~~~l~~-~~~~~~~l~~--~~~~l~~gG~l~i~~ 143 (222)
... + .. .++||+|+.--.++. +.+....+.. -..+|+|+|.+++-.
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 743 1 22 235999999877762 1222333333 557899999997753
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.5e-06 Score=62.97 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=64.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.++||+||++|.++..+.+. +.+|++||..+ +-...... ++|.....|......+.+.+|.++|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~~~L~~~---------~~V~h~~~d~fr~~p~~~~vDwvVc 276 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MAQSLMDT---------GQVEHLRADGFKFRPPRKNVDWLVC 276 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cCHhhhCC---------CCEEEEeccCcccCCCCCCCCEEEE
Confidence 57889999999999999999976 56999999654 21111111 6899888887665333567999999
Q ss_pred cccccCcccHHHHHHHHhcccCCC
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPG 136 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~g 136 (222)
-.+ ..+.++.+-+.+++..|
T Consensus 277 Dmv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 277 DMV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred ecc----cCHHHHHHHHHHHHhcC
Confidence 554 34677888888888766
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-06 Score=74.17 Aligned_cols=123 Identities=19% Similarity=0.127 Sum_probs=85.5
Q ss_pred hHHHHHHHHhhCC-CCCCeEEEecCCCChhHHHHHHHh---C--------------------------------------
Q 027517 20 RIWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQV---G-------------------------------------- 57 (222)
Q Consensus 20 ~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~---~-------------------------------------- 57 (222)
......++...+. .++..++|.+||+|.+....+... .
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 4445556665555 567899999999999987665421 0
Q ss_pred CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC--CCceeEEEEcccccCc----ccHHHHHHHHhc
Q 027517 58 SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS--DCFFDAITMGYGLRNV----VDKRKALEESFR 131 (222)
Q Consensus 58 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~----~~~~~~l~~~~~ 131 (222)
...+++|+|+++.+++.|+.++...+.. ..+.+.++|+.+++.+ .+++|+|+++-.+..- .+...+.+.+.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~--~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVA--ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCC--cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHH
Confidence 1126999999999999999998776543 4689999999887543 2469999999876533 123344444444
Q ss_pred ccC---CCcEEEEEec
Q 027517 132 VLK---PGSRISVLDF 144 (222)
Q Consensus 132 ~l~---~gG~l~i~~~ 144 (222)
.++ +|+.+++...
T Consensus 333 ~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 333 RLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHhCCCCeEEEEeC
Confidence 444 8888877654
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=61.05 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=79.5
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
..-.+++|||+|+|+|--+...++.- ...+...|+.+......+-+.+.++ -++.+...|... ++..+|++
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g---~~~~~Dl~ 146 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG---SPPAFDLL 146 (218)
T ss_pred cccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC---CCcceeEE
Confidence 33457899999999999988877662 3479999999988888887776554 366777777655 35679999
Q ss_pred EEcccccCcccHHHHHHHHhcccCC-CcEEEEEecCCCC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKP-GSRISVLDFNKST 148 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~-gG~l~i~~~~~~~ 148 (222)
+...++..-+...+++. +...++. |-.+++.++.+..
T Consensus 147 LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 147 LAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred EeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 99999887777777887 5555554 4456666666543
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-06 Score=58.11 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=66.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh---CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 109 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (222)
.+...|+|+|||.|.++..++..+ .++.+|+++|.++..++.+..+..........++.+...+..+... ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 667899999999999999998833 3567999999999999999988766553222456666666554322 345688
Q ss_pred EEEcccccCcccHHHHHHHHhc
Q 027517 110 ITMGYGLRNVVDKRKALEESFR 131 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~ 131 (222)
++..+.-..+. ..+++...+
T Consensus 103 ~vgLHaCG~Ls--~~~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLS--DRALRLFIR 122 (141)
T ss_pred EEEeecccchH--HHHHHHHHH
Confidence 88766555443 334444444
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-06 Score=69.12 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=79.5
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCCceeEEEEcc
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMGY 114 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~ 114 (222)
.+|||+.||+|..+..++...+...+|+++|+++++++.+++++...+. .++++++.|+..+-. ...+||+|.+.-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~---~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV---ENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 5899999999999999998742224899999999999999999865543 368899999876421 235699999854
Q ss_pred cccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 115 GLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+ ..+...+..+.+.+++||.+.++.
T Consensus 123 -f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 -F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 3 234578888999999999999874
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-06 Score=65.46 Aligned_cols=102 Identities=20% Similarity=0.186 Sum_probs=75.7
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+....+.+.+.+...++..|||+|+|+|.++..+++.. .+++++|+++...+..+++.... ++++++..|+.
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~-----~~~~vi~~D~l 86 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASN-----PNVEVINGDFL 86 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTC-----SSEEEEES-TT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhc-----ccceeeecchh
Confidence 45556677777777788999999999999999999883 68999999999999988876421 68999999999
Q ss_pred CcCCCC---CceeEEEEcccccCcccHHHHHHHHhc
Q 027517 99 DLPFSD---CFFDAITMGYGLRNVVDKRKALEESFR 131 (222)
Q Consensus 99 ~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~ 131 (222)
++.... .....|+++-.. +.. ..++.++..
T Consensus 87 ~~~~~~~~~~~~~~vv~NlPy-~is--~~il~~ll~ 119 (262)
T PF00398_consen 87 KWDLYDLLKNQPLLVVGNLPY-NIS--SPILRKLLE 119 (262)
T ss_dssp TSCGGGHCSSSEEEEEEEETG-TGH--HHHHHHHHH
T ss_pred ccccHHhhcCCceEEEEEecc-cch--HHHHHHHhh
Confidence 876543 345677776554 332 344444444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.1e-07 Score=63.53 Aligned_cols=76 Identities=25% Similarity=0.466 Sum_probs=54.4
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CCCCc-eeEEEEc
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCF-FDAITMG 113 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~-~D~v~~~ 113 (222)
.|+|+.||.|..+..+++.+ .+|+++|+++..++.++.++...+.. .++.++++|..+.. ..... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~--~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVA--DNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-G--GGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999873 48999999999999999998877543 68999999998742 22122 8999986
Q ss_pred cccc
Q 027517 114 YGLR 117 (222)
Q Consensus 114 ~~l~ 117 (222)
-...
T Consensus 77 PPWG 80 (163)
T PF09445_consen 77 PPWG 80 (163)
T ss_dssp --BS
T ss_pred CCCC
Confidence 5543
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.9e-06 Score=65.41 Aligned_cols=121 Identities=18% Similarity=0.157 Sum_probs=88.7
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhC---C----------------------------CC-------c
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG---S----------------------------QG-------K 61 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~----------------------------~~-------~ 61 (222)
..+...++.+.+..++..++|--||+|.+....+-... | .. .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 44556677777888888999999999999887665521 1 01 2
Q ss_pred EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCc-cc---H----HHHHHHHhccc
Q 027517 62 VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV-VD---K----RKALEESFRVL 133 (222)
Q Consensus 62 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~-~~---~----~~~l~~~~~~l 133 (222)
++|+|+++.+++.|+.+....+.. ..|++.+.|+..++.+.+.+|+|+||-....- .+ . ..+.+.+++.+
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~--d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVG--DLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCC--ceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHh
Confidence 779999999999999998876654 67999999999986554679999998875532 11 1 23444556666
Q ss_pred CCCcEEEEE
Q 027517 134 KPGSRISVL 142 (222)
Q Consensus 134 ~~gG~l~i~ 142 (222)
+.-+..+++
T Consensus 335 ~~ws~~v~t 343 (381)
T COG0116 335 AGWSRYVFT 343 (381)
T ss_pred cCCceEEEE
Confidence 666666664
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.2e-06 Score=56.87 Aligned_cols=104 Identities=20% Similarity=0.299 Sum_probs=72.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCCc--------CC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDL--------PF 102 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~--------~~ 102 (222)
..|+.+|||+||.+|.++....+..+|.+.+.|+|+..- . ++ +.+.++++ |+.+. ..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~--p~---~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------E--PP---EGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------c--CC---CCcccccccccCCHHHHHHHHHhC
Confidence 367899999999999999999999889999999998431 1 11 35566665 77663 24
Q ss_pred CCCceeEEEEcccccCc----ccHH-------HHHHHHhcccCCCcEEEEEecCCCCC
Q 027517 103 SDCFFDAITMGYGLRNV----VDKR-------KALEESFRVLKPGSRISVLDFNKSTQ 149 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~----~~~~-------~~l~~~~~~l~~gG~l~i~~~~~~~~ 149 (222)
++.+.|+|++-+.-... .|.. .++.-....++|+|.++.-.+...+.
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~ 190 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE 190 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence 67889999986543221 2222 33444456778999998776665443
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.6e-06 Score=65.00 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=73.9
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.+...+++.+...++..++|.-+|.|..+..+++.+++ ++++|+|.++.+++.+++++.... .++.+++++..++
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~----~R~~~i~~nF~~l 81 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE----GRVVLIHDNFANF 81 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC----CcEEEEeCCHHHH
Confidence 44566777777778889999999999999999998744 799999999999999999875432 5899999988764
Q ss_pred C-----CCCCceeEEEEcccccC
Q 027517 101 P-----FSDCFFDAITMGYGLRN 118 (222)
Q Consensus 101 ~-----~~~~~~D~v~~~~~l~~ 118 (222)
. ....++|.|++...+..
T Consensus 82 ~~~l~~~~~~~vDgIl~DLGvSS 104 (305)
T TIGR00006 82 FEHLDELLVTKIDGILVDLGVSS 104 (305)
T ss_pred HHHHHhcCCCcccEEEEeccCCH
Confidence 2 12356899997666553
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-07 Score=60.21 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=44.0
Q ss_pred EEecCCCChhHHHHHHHhCCCC--cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeEEEEcc
Q 027517 39 LDVCCGSGDLSFLLSEQVGSQG--KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAITMGY 114 (222)
Q Consensus 39 LdiG~G~G~~~~~l~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~ 114 (222)
||+|+..|..+..+++.+.+.. +++++|..+. .+..++........ .+++++.++..+. .++.+++|+++.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~--~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS--DRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC--CeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 6899999999998888765544 7999999885 22222222221221 5799999998763 12246899999865
Q ss_pred cccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 115 GLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
-|..+.....++.+.+.|+|||.+++.+
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2334556778999999999999998754
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.33 E-value=4e-06 Score=66.04 Aligned_cols=74 Identities=31% Similarity=0.578 Sum_probs=54.9
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+...+.++++..++ .|||+-||.|.++..+++. ..+|+|+|+++++++.|++++...+. .|++++.+++++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i---~n~~f~~~~~~~ 255 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGI---DNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHH
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCC---CcceEEEeeccc
Confidence 4455666777776655 8999999999999999965 35899999999999999999876554 589999887765
Q ss_pred c
Q 027517 100 L 100 (222)
Q Consensus 100 ~ 100 (222)
+
T Consensus 256 ~ 256 (352)
T PF05958_consen 256 F 256 (352)
T ss_dssp C
T ss_pred h
Confidence 3
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.9e-06 Score=67.67 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=56.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCC-------CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGS-------QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P 101 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~ 101 (222)
...+|||.|||+|.++..+++.+.. ...++++|+++.++..++.++..... ..+.+...|.... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~---~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL---LEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC---CCceeeecccccccccccc
Confidence 3458999999999999988876531 13689999999999999887654321 2344555553321 1
Q ss_pred CCCCceeEEEEcccccC
Q 027517 102 FSDCFFDAITMGYGLRN 118 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~ 118 (222)
...+.||+|+.+-.+.-
T Consensus 108 ~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 108 SYLDLFDIVITNPPYGR 124 (524)
T ss_pred cccCcccEEEeCCCccc
Confidence 11257999999877653
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-05 Score=55.96 Aligned_cols=144 Identities=20% Similarity=0.173 Sum_probs=90.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeE-EeCCCCCcC---CCCCcee
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW-VEGDALDLP---FSDCFFD 108 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~d~~~~~---~~~~~~D 108 (222)
.++..+||+|+.||.++..++++ + ..+|+++|..-..++..-+.- +++.. ...|+..+. +. +..|
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~-g-Ak~VyavDVG~~Ql~~kLR~d--------~rV~~~E~tN~r~l~~~~~~-~~~d 146 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR-G-AKHVYAVDVGYGQLHWKLRND--------PRVIVLERTNVRYLTPEDFT-EKPD 146 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc-C-CcEEEEEEccCCccCHhHhcC--------CcEEEEecCChhhCCHHHcc-cCCC
Confidence 46789999999999999999977 2 348999999887777655543 45543 445655432 22 3678
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcC
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (222)
++++--++- ....+|-.+...++|++.++...-. .++.-.............. .+..
T Consensus 147 ~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKP-----QFEagr~~v~kkGvv~d~~---------------~~~~ 203 (245)
T COG1189 147 LIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVKP-----QFEAGREQVGKKGVVRDPK---------------LHAE 203 (245)
T ss_pred eEEEEeehh---hHHHHHHHHHHhcCCCceEEEEecc-----hhhhhhhhcCcCceecCcc---------------hHHH
Confidence 999866544 4477888999999999987653211 1111111111010000000 0112
Q ss_pred CHHHHHHHHHHcCCeEEEEeee
Q 027517 189 TGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 189 ~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
-..++.+.+++.||.+.....-
T Consensus 204 v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 204 VLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred HHHHHHHHHhhcCcEEeeeEcc
Confidence 3468889999999998776544
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-06 Score=60.20 Aligned_cols=99 Identities=21% Similarity=0.214 Sum_probs=76.7
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
...+.|+|+|+|-++...++. ..+|++++.+|.....+++++... +..+++++.+|+.+..+ ...|+|+|-.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~---g~~n~evv~gDA~~y~f--e~ADvvicEm 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVP---GDVNWEVVVGDARDYDF--ENADVVICEM 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCC---CCcceEEEecccccccc--cccceeHHHH
Confidence 368999999999999877765 248999999999999999986332 33699999999999877 3579999844
Q ss_pred cccCc--ccHHHHHHHHhcccCCCcEEEE
Q 027517 115 GLRNV--VDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 115 ~l~~~--~~~~~~l~~~~~~l~~gG~l~i 141 (222)
.=..+ +....++..+.+.||.++.++-
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 32222 3456678888889999998864
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-05 Score=62.40 Aligned_cols=113 Identities=18% Similarity=0.293 Sum_probs=87.4
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCC
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDC 105 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~ 105 (222)
.+...|+.+|||.+|.+|.-+.+++..+...+.+++.|.+..-+...+.++.+.+. .+..+...|..+++ ++.
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv---~ntiv~n~D~~ef~~~~~~~- 311 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV---TNTIVSNYDGREFPEKEFPG- 311 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC---CceEEEccCcccccccccCc-
Confidence 34567899999999999999999999988888999999999999998888877664 57778888887664 443
Q ss_pred ceeEEEEcccccC------cc---------c-------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 106 FFDAITMGYGLRN------VV---------D-------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 106 ~~D~v~~~~~l~~------~~---------~-------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+||-|+.-....- -+ + +.++|......+++||+|+-++-+
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 8999995332221 11 1 356788888999999999876543
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-06 Score=62.12 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----CCCCCceeE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFFDA 109 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~ 109 (222)
....|+|.-||.|+.+..++.. ...|+++|++|.-+..|+.+++..+.. .+|.++++|..++ .+....+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~--~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVP--DRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCC--ceeEEEechHHHHHHHHhhhhheeee
Confidence 3457999999999999888866 458999999999999999999887765 6999999999874 344456788
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCc
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGS 137 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG 137 (222)
|+.+.......-...-+-.+...++|.|
T Consensus 169 vf~sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 169 VFLSPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred eecCCCCCCcchhhhhhhhhhhhcchhH
Confidence 8877665544433444555555666654
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.4e-06 Score=59.36 Aligned_cols=104 Identities=25% Similarity=0.241 Sum_probs=76.2
Q ss_pred HhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCCh----hHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK----NQLSMASSRQDLVSKACYKNIEWVEGDALDLP-- 101 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-- 101 (222)
+.+.++|+.+||-+|+++|....+.....++...|++++.|. +.+..|+++ +||..+..|+.-..
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---------tNiiPIiEDArhP~KY 220 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---------TNIIPIIEDARHPAKY 220 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---------CCceeeeccCCCchhe
Confidence 345778999999999999999999999999999999999987 456666666 68888888876531
Q ss_pred -CCCCceeEEEEcccccCcccHH-HHHHHHhcccCCCcEEEEEe
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKR-KALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~l~~gG~l~i~~ 143 (222)
..-.-.|+|++-- .-|++. .+.-+..-.||+||.+++.-
T Consensus 221 RmlVgmVDvIFaDv---aqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 221 RMLVGMVDVIFADV---AQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eeeeeeEEEEeccC---CCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 1112356666532 123433 34556777999999998854
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.6e-07 Score=59.43 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=43.9
Q ss_pred eeEEeCCCCCcCCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecC
Q 027517 90 IEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 90 i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+.+.+.......|.+++.|+|++.++++|+. +-..+++.+.+.|||||+|-+..+.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 3444333344567788999999999999994 4577899999999999999887654
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-05 Score=55.55 Aligned_cols=108 Identities=21% Similarity=0.183 Sum_probs=83.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v 110 (222)
.++.+||++|-|.|-....+.++ ++. +=+.++..|+.++..+...-. ...+|.+..+-.++. ..+++.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p~-~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PPD-EHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CCc-ceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccccccCccee
Confidence 67889999999999998888876 443 667789999999888776422 226888888876663 2466789999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
+.----.+.++.....+.+.++|||+|.+-......
T Consensus 174 ~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 174 YYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred EeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 976555666788888899999999999987654443
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-05 Score=62.68 Aligned_cols=106 Identities=25% Similarity=0.336 Sum_probs=85.4
Q ss_pred CCCC-eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGD-NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.+.. +++-+|||.-.++..+-+.. -..++.+|+|+-.++....+..+.. +-..+...|+..+.+++++||+|+
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~~~----~~~~~~~~d~~~l~fedESFdiVI 119 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAKER----PEMQMVEMDMDQLVFEDESFDIVI 119 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccccCC----cceEEEEecchhccCCCcceeEEE
Confidence 3444 99999999999988887652 3479999999999988887764322 568899999999999999999999
Q ss_pred EcccccCcc-c---------HHHHHHHHhcccCCCcEEEEEec
Q 027517 112 MGYGLRNVV-D---------KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 112 ~~~~l~~~~-~---------~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.-+.++++- + ....+.++.+++++||+.+.+..
T Consensus 120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 988888772 1 23557899999999999877666
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-05 Score=57.60 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=59.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
++..+|+|||||.--++...... .++..|+++|++..+++.....+...+ .+..+...|...-+ +....|+.++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~~~~-~~~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLLSDP-PKEPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH-TTSEESEEEE
T ss_pred CCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeeeccC-CCCCcchhhH
Confidence 44779999999999888877765 466799999999999999998877665 46777777877643 3467899998
Q ss_pred cccccCcc
Q 027517 113 GYGLRNVV 120 (222)
Q Consensus 113 ~~~l~~~~ 120 (222)
.=+++-++
T Consensus 178 lK~lp~le 185 (251)
T PF07091_consen 178 LKTLPCLE 185 (251)
T ss_dssp ET-HHHHH
T ss_pred HHHHHHHH
Confidence 77776554
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.4e-05 Score=52.60 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=58.4
Q ss_pred cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC--CCCceeEEEEcccccCccc---------HHHHHHHH
Q 027517 61 KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF--SDCFFDAITMGYGLRNVVD---------KRKALEES 129 (222)
Q Consensus 61 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~v~~~~~l~~~~~---------~~~~l~~~ 129 (222)
+|+++|+.+++++..++++...... .+++++..+-+.+.. +.+++|+++.|...-.=.| .-.+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~--~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE--DRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G--SGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC--CcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999999876543 479999988777542 3347999998765332222 25678999
Q ss_pred hcccCCCcEEEEEecCC
Q 027517 130 FRVLKPGSRISVLDFNK 146 (222)
Q Consensus 130 ~~~l~~gG~l~i~~~~~ 146 (222)
.+.|+|||.+.++.+..
T Consensus 79 l~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHEEEEEEEEEEE--S
T ss_pred HHhhccCCEEEEEEeCC
Confidence 99999999998887664
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00025 Score=51.08 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=96.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
.+.++.|+||--+.+..++.+. ++...+++.|+++..++.|.+++...... ++++...+|....-.+++.+|+|+..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~--~~i~vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLS--ERIDVRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred cCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCc--ceEEEeccCCccccCccCCcCEEEEe
Confidence 3445999999999999999988 46668999999999999999998776544 67888888875432334568888865
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHH
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 193 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (222)
+.-.. -...++++-.+.|+.=-++++. + .-...++
T Consensus 93 GMGG~--lI~~ILee~~~~l~~~~rlILQ-P------------------------------------------n~~~~~L 127 (226)
T COG2384 93 GMGGT--LIREILEEGKEKLKGVERLILQ-P------------------------------------------NIHTYEL 127 (226)
T ss_pred CCcHH--HHHHHHHHhhhhhcCcceEEEC-C------------------------------------------CCCHHHH
Confidence 54221 2355666666666543355442 1 1134678
Q ss_pred HHHHHHcCCeEEEEeeecC--CeeeeEeee
Q 027517 194 EKLALEIGFSRAKHYELSG--GLMGNLVAT 221 (222)
Q Consensus 194 ~~~l~~~Gf~~~~~~~~~~--~~~~~~~~~ 221 (222)
+++|...+|++++..-+.. ..+-++++.
T Consensus 128 R~~L~~~~~~I~~E~ileE~~kiYEIlv~e 157 (226)
T COG2384 128 REWLSANSYEIKAETILEEDGKIYEILVVE 157 (226)
T ss_pred HHHHHhCCceeeeeeeecccCeEEEEEEEe
Confidence 8889999999887665543 344454443
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.6e-05 Score=56.22 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=68.4
Q ss_pred HHHHHhhCCCCCC--eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh----hh--cCCCeeEEeC
Q 027517 24 RMAVSWSGAKTGD--NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----KA--CYKNIEWVEG 95 (222)
Q Consensus 24 ~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~----~~--~~~~i~~~~~ 95 (222)
+.+.+.++.+++. +|||+-+|+|..+..++.. +++|+++|-++......++.+.... .. ...+++++..
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 3456667767776 9999999999999999865 6689999999988877777665531 01 1146888889
Q ss_pred CCCCc-CCCCCceeEEEEcccccCc
Q 027517 96 DALDL-PFSDCFFDAITMGYGLRNV 119 (222)
Q Consensus 96 d~~~~-~~~~~~~D~v~~~~~l~~~ 119 (222)
|..+. .....+||+|++--.+.+-
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCCCC
Confidence 88763 2223479999987776664
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0016 Score=47.92 Aligned_cols=100 Identities=19% Similarity=0.116 Sum_probs=58.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCC-CCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPF-SDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~~D~v 110 (222)
-.+++||-+|-.. ++...+...+...+++.+|+++..++..++.....+. +++....|+.+ +|. -.++||++
T Consensus 43 L~gk~il~lGDDD--LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 43 LEGKRILFLGDDD--LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp STT-EEEEES-TT---HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEE
T ss_pred ccCCEEEEEcCCc--HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHHhcCCCEE
Confidence 4678999999443 4333333334556999999999999999988776653 58999999887 332 14789999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
++.-+ ...+....++.+..+.||..|..
T Consensus 117 ~TDPP-yT~~G~~LFlsRgi~~Lk~~g~~ 144 (243)
T PF01861_consen 117 FTDPP-YTPEGLKLFLSRGIEALKGEGCA 144 (243)
T ss_dssp EE----SSHHHHHHHHHHHHHTB-STT-E
T ss_pred EeCCC-CCHHHHHHHHHHHHHHhCCCCce
Confidence 98553 22345677889999999887743
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.5e-05 Score=53.44 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=47.1
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
.++|+|||.|..+..+++.. +..+++++|.++.+.+.++++....+. .++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence 48999999999999998874 666899999999999999988754332 357777766554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.8e-05 Score=55.00 Aligned_cols=107 Identities=18% Similarity=0.320 Sum_probs=73.1
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh----hhcCCCeeEEeCCCCCc-C--CCCCcee
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----KACYKNIEWVEGDALDL-P--FSDCFFD 108 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~d~~~~-~--~~~~~~D 108 (222)
..+.|||||-|.++..++..+ |..-+.|.++....-+..+++..++. .+..+|+.+...++... | +..++.+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 468999999999999999986 77789999998888888887765543 22346777777776653 2 2223333
Q ss_pred EEEEcccccCccc--------HHHHHHHHhcccCCCcEEEEEe
Q 027517 109 AITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 109 ~v~~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
-.+..+.=-|+.. ....+.+..-+|++||.++.++
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 3333333223321 1456788888999999988753
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=59.27 Aligned_cols=117 Identities=21% Similarity=0.327 Sum_probs=78.5
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+...+-++...+.++.++|+.||||.+...+++. -.+|+|+++++++++.|+.++...+. .|.+++++-+++
T Consensus 369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~Ngi---sNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGI---SNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCc---cceeeeecchhh
Confidence 445566777888888899999999999999999976 35899999999999999999877665 599999995555
Q ss_pred c-C--C-C-CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 100 L-P--F-S-DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 100 ~-~--~-~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+ + + + -++=++|.....-. .--...+++.+++.-++--.+++++
T Consensus 443 ~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 443 LFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred ccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEc
Confidence 2 1 1 1 01223222211100 0001456666666555555555543
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00095 Score=50.42 Aligned_cols=169 Identities=14% Similarity=0.038 Sum_probs=98.1
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD- 99 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~- 99 (222)
.+...+.+.+.. ....|+.+|||.-.-...+.. +++..++-+|. |+.++..++.+...+.....+..++..|+.+
T Consensus 69 ~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~--~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~ 144 (260)
T TIGR00027 69 FFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPW--PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQD 144 (260)
T ss_pred HHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCC--CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhh
Confidence 333444444443 345799999998766666532 22345666664 5566666666554322222578888888862
Q ss_pred c-------CCCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhh-HHHHHHhhcccccccc
Q 027517 100 L-------PFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTT-AIQEWMIDNVVVPVAS 169 (222)
Q Consensus 100 ~-------~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 169 (222)
. .+.....-++++-+++.+++. ...+++.+.+...||+.+++............ ....... ...
T Consensus 145 w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~-~~~----- 218 (260)
T TIGR00027 145 WPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYH-AAR----- 218 (260)
T ss_pred HHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHH-hhh-----
Confidence 1 122234567788888888854 57789999988889988876544431111100 0111100 000
Q ss_pred cCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEE
Q 027517 170 GYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKH 207 (222)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 207 (222)
. .........++++++.++|++.||+..+.
T Consensus 219 ~--------~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 219 G--------VDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred c--------ccccccccCCChhhHHHHHHHCCCeeecC
Confidence 0 00112233468899999999999998775
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00069 Score=53.66 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=63.4
Q ss_pred CCeEEEecCCCChhHHHHHH--------Hh------CCCCcEEEEeCChhHHHHHhcchhhhhh-----------hcCCC
Q 027517 35 GDNVLDVCCGSGDLSFLLSE--------QV------GSQGKVIGLDFSKNQLSMASSRQDLVSK-----------ACYKN 89 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~--------~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~-----------~~~~~ 89 (222)
..+|+|+|||+|..+..+.. .+ .|..++..-|.-..-.+..=+.+..... .....
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 55899999999977754422 11 1234666667543222211111110000 00001
Q ss_pred --eeEEeCCCCCcCCCCCceeEEEEcccccCcccH--------------------------------------HHHHHHH
Q 027517 90 --IEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK--------------------------------------RKALEES 129 (222)
Q Consensus 90 --i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--------------------------------------~~~l~~~ 129 (222)
+.-+.+....--+|.++.+++++.+++|++... ..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223444434778899999999999988531 1233444
Q ss_pred hcccCCCcEEEEEecCCC
Q 027517 130 FRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 130 ~~~l~~gG~l~i~~~~~~ 147 (222)
.+-|.|||+++++...++
T Consensus 224 a~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHhccCcEEEEEEecCC
Confidence 557899999999887764
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.5e-05 Score=57.64 Aligned_cols=113 Identities=16% Similarity=0.251 Sum_probs=69.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC--cCCC-CCceeEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LPFS-DCFFDAI 110 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~-~~~~D~v 110 (222)
...+|||+|.|+|.-+..+-..++.--+++.++.|+..-+............ .......|+.. ++++ .+.|+++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~---~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE---KTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc---cCCCCCCccchhccCCCccceeehh
Confidence 3457999999999887776666533336777777776555544433221111 11112222221 2222 2457777
Q ss_pred EEcccccCccc---HHHHHHHHhcccCCCcEEEEEecCCCCC
Q 027517 111 TMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFNKSTQ 149 (222)
Q Consensus 111 ~~~~~l~~~~~---~~~~l~~~~~~l~~gG~l~i~~~~~~~~ 149 (222)
+...-|-+... ....++.++.++.|||.++|++...+.+
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 76555554432 3457999999999999999999887665
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00014 Score=58.54 Aligned_cols=131 Identities=20% Similarity=0.205 Sum_probs=86.4
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCCh----hHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCCCCCceeE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK----NQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~ 109 (222)
-.+|+|..+|.|.++..|.+. .|.....-+ ..+....++ .+.=.-.|..+ ++.-+++||+
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydR----------GLIG~yhDWCE~fsTYPRTYDL 430 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDR----------GLIGVYHDWCEAFSTYPRTYDL 430 (506)
T ss_pred eeeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhc----------ccchhccchhhccCCCCcchhh
Confidence 358999999999999998754 244444333 333333332 11112234433 5544688999
Q ss_pred EEEcccccCcc---cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhh
Q 027517 110 ITMGYGLRNVV---DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 186 (222)
Q Consensus 110 v~~~~~l~~~~---~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (222)
|-+.+++.... +...++-++-|+|+|+|.++|-+..
T Consensus 431 lHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~----------------------------------------- 469 (506)
T PF03141_consen 431 LHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV----------------------------------------- 469 (506)
T ss_pred eehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH-----------------------------------------
Confidence 99999888774 3678899999999999999885322
Q ss_pred cCCHHHHHHHHHHcCCeEEEEeeecC--CeeeeEeeeC
Q 027517 187 FLTGKDLEKLALEIGFSRAKHYELSG--GLMGNLVATR 222 (222)
Q Consensus 187 ~~~~~~~~~~l~~~Gf~~~~~~~~~~--~~~~~~~~~k 222 (222)
.-..+++.++++-.++........+ +.-.+.+|+|
T Consensus 470 -~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 470 -DVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred -HHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 1235777888888887765554443 2355777776
|
; GO: 0008168 methyltransferase activity |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0003 Score=53.63 Aligned_cols=83 Identities=14% Similarity=0.086 Sum_probs=47.2
Q ss_pred CCeEEEecCCCChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh-hhhcCCCeeEEeCCCCC-----cCCCCCce
Q 027517 35 GDNVLDVCCGSGDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALD-----LPFSDCFF 107 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~d~~~-----~~~~~~~~ 107 (222)
..++||||+|....- +..++.+ +.+++|.|+++..++.|++..... ... .+|++....-.. +..+.+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L~--~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNLE--SRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-T--TTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccccc--cceEEEEcCCccccchhhhccccee
Confidence 458999999987554 4444443 789999999999999999998776 332 678877553221 11234679
Q ss_pred eEEEEcccccCccc
Q 027517 108 DAITMGYGLRNVVD 121 (222)
Q Consensus 108 D~v~~~~~l~~~~~ 121 (222)
|+.+|+-.++.-.+
T Consensus 179 dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 179 DFTMCNPPFYSSQE 192 (299)
T ss_dssp EEEEE-----SS--
T ss_pred eEEecCCccccChh
Confidence 99999998886643
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00025 Score=51.00 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=56.0
Q ss_pred CCCeEEEecCCCChhHHHHHH---HhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-------C-
Q 027517 34 TGDNVLDVCCGSGDLSFLLSE---QVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-------F- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~- 102 (222)
+++.|+|+|.-.|+.+..++. .++..++|+++|++-...+...... .+. .++|+++++|..+.. .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~--hp~--~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES--HPM--SPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG--------TTEEEEES-SSSTHHHHTSGSS-
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh--ccc--cCceEEEECCCCCHHHHHHHHHhh
Confidence 456999999999988776654 4456679999999654433222111 111 169999999987642 1
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
......+|+ .-+-|......+.|+.....+++|+++++.+.
T Consensus 108 ~~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 108 SPPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp ---SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred ccCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 112233444 33344445667788889999999999988543
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00025 Score=53.55 Aligned_cols=94 Identities=20% Similarity=0.295 Sum_probs=75.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+....++.+...|+...+|.--|.|+.+..+++.+++.++++++|-++.+++.|++++.... .++.+++.++.+
T Consensus 9 pVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~----~r~~~v~~~F~~ 84 (314)
T COG0275 9 PVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD----GRVTLVHGNFAN 84 (314)
T ss_pred chHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC----CcEEEEeCcHHH
Confidence 4455667778888888999999999999999999998777789999999999999999986544 689999998776
Q ss_pred cC-----CCCCceeEEEEccccc
Q 027517 100 LP-----FSDCFFDAITMGYGLR 117 (222)
Q Consensus 100 ~~-----~~~~~~D~v~~~~~l~ 117 (222)
+. ...+++|-|++-....
T Consensus 85 l~~~l~~~~i~~vDGiL~DLGVS 107 (314)
T COG0275 85 LAEALKELGIGKVDGILLDLGVS 107 (314)
T ss_pred HHHHHHhcCCCceeEEEEeccCC
Confidence 42 2235788888654444
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=54.05 Aligned_cols=148 Identities=19% Similarity=0.197 Sum_probs=88.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHH-------Hhcchh---------------------hh----
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM-------ASSRQD---------------------LV---- 82 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~-------~~~~~~---------------------~~---- 82 (222)
..+||--|||.|+++..++.. +..+.|-++|--|+-. ++..-. ..
T Consensus 151 ki~iLvPGaGlGRLa~dla~~---G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL---GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHh---cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 458999999999999999876 3456666765554322 111100 00
Q ss_pred -hhh-cC---CCeeEEeCCCCCc-CC--CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhH
Q 027517 83 -SKA-CY---KNIEWVEGDALDL-PF--SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTA 154 (222)
Q Consensus 83 -~~~-~~---~~i~~~~~d~~~~-~~--~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~ 154 (222)
.+. .. .......+|+.+. +. ..+.||+|+.++.+..-.+.-..++.+..+|||||..+-..+-.-..
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF----- 302 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHF----- 302 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeec-----
Confidence 000 00 1122233555442 11 12469999998877777778888999999999999987542211000
Q ss_pred HHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 155 IQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
.. ..+ ..+...--++.+++..+.+..||++++....
T Consensus 303 ----~d---------~~g-------~~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 303 ----ED---------THG-------VENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred ----cC---------CCC-------CcccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 00 000 0001112468899999999999999876644
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0003 Score=50.86 Aligned_cols=100 Identities=22% Similarity=0.309 Sum_probs=70.7
Q ss_pred CCeEEEecCCCChhHHHHHHHhCC----C-C---cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGS----Q-G---KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 101 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~----~-~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----- 101 (222)
-.+++|+++.+|.++..+.+++-. . . .++++|+.+-+ +. +.|..+++|++...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI---~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PI---EGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------cc---CceEEeecccCCHhHHHHH
Confidence 458999999999999999887633 1 1 39999986621 11 57888899998742
Q ss_pred ---CCCCceeEEEEccc-----ccCcccH------HHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 102 ---FSDCFFDAITMGYG-----LRNVVDK------RKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 102 ---~~~~~~D~v~~~~~-----l~~~~~~------~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
|..++.|+|+|-.+ +|.+.+. ..+|.-...+|+|||.++---+-...
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~ 168 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRD 168 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCc
Confidence 55678999999665 5666442 34566667799999999754433333
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=55.43 Aligned_cols=91 Identities=21% Similarity=0.310 Sum_probs=63.4
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+...+++.+...++..++|.--|.|+.+..+++.+++ ++++++|-++++++.+++++.... .++.++..++.++.
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~----~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD----DRFIFIHGNFSNLD 82 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC----TTEEEEES-GGGHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc----ceEEEEeccHHHHH
Confidence 3456677777788889999999999999999998755 899999999999999999886543 68999998887742
Q ss_pred -----C-CCCceeEEEEccccc
Q 027517 102 -----F-SDCFFDAITMGYGLR 117 (222)
Q Consensus 102 -----~-~~~~~D~v~~~~~l~ 117 (222)
. ...++|.|++-..+.
T Consensus 83 ~~l~~~~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 83 EYLKELNGINKVDGILFDLGVS 104 (310)
T ss_dssp HHHHHTTTTS-EEEEEEE-S--
T ss_pred HHHHHccCCCccCEEEEccccC
Confidence 2 234688888644433
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=51.09 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=70.3
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC-CCCcCCCCCce
Q 027517 30 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD-ALDLPFSDCFF 107 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~ 107 (222)
....|+++|+-.|+| .|..+..+++.+ +.+|+++|.+++-.+.+++.- .-.++... ....+.-.+.+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lG---------Ad~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLG---------ADHVINSSDSDALEAVKEIA 230 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhC---------CcEEEEcCCchhhHHhHhhC
Confidence 456789999999888 357778888875 479999999999999998873 23344332 21221112349
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
|+|+.+-+ ...+....+.|++||+++++-...
T Consensus 231 d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 231 DAIIDTVG-------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred cEEEECCC-------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 99998654 345667788899999999987764
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00018 Score=49.13 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=64.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHH-HhcchhhhhhhcCCCeeE-EeCCCCC-cCCCCCceeEEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM-ASSRQDLVSKACYKNIEW-VEGDALD-LPFSDCFFDAIT 111 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~-~~~~~~~~~~~~~~~i~~-~~~d~~~-~~~~~~~~D~v~ 111 (222)
+++++-+|+...+.-...++. ...++..+|.++--++. .+ .++.. ...|... ...-.++||.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~--GA~~iltveyn~L~i~~~~~-----------dr~ssi~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH--GAAKILTVEYNKLEIQEEFR-----------DRLSSILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHc--CCceEEEEeecccccCcccc-----------cccccccHHHHHHHHHHhhccchhhh
Confidence 567888999877766555544 23479999876521111 11 12211 1122211 112236799999
Q ss_pred EcccccCcc-----c------HHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 112 MGYGLRNVV-----D------KRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 112 ~~~~l~~~~-----~------~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
|.++++|+- | ..+.+.+++++|||||.|++..+..++
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 999998872 2 257889999999999999998777654
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0067 Score=47.61 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=61.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh--------C-------CCCcEEEEeCChhHHHHHhcchhhhh--hhcCCCe--eEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQV--------G-------SQGKVIGLDFSKNQLSMASSRQDLVS--KACYKNI--EWV 93 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~--------~-------~~~~~~~~D~~~~~~~~~~~~~~~~~--~~~~~~i--~~~ 93 (222)
+..-+|+|+||..|..+..+.... . +..+|+.-|.-..-....=+.+.... ....+++ .-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 445599999999999887654421 1 11367777864432222211111110 0001233 334
Q ss_pred eCCCCCcCCCCCceeEEEEcccccCcccH---------------------------------------HHHHHHHhcccC
Q 027517 94 EGDALDLPFSDCFFDAITMGYGLRNVVDK---------------------------------------RKALEESFRVLK 134 (222)
Q Consensus 94 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~---------------------------------------~~~l~~~~~~l~ 134 (222)
.+....--+|.++.|++++.+++||+... ..+|+.=.+-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 56666645788999999999999988320 123444455789
Q ss_pred CCcEEEEEecCCCC
Q 027517 135 PGSRISVLDFNKST 148 (222)
Q Consensus 135 ~gG~l~i~~~~~~~ 148 (222)
|||+++++...+++
T Consensus 175 ~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 175 PGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEE-ST
T ss_pred cCcEEEEEEeeccc
Confidence 99999998877655
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00054 Score=50.34 Aligned_cols=90 Identities=27% Similarity=0.357 Sum_probs=49.8
Q ss_pred HHHhhCCCCC--CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh------hcCCCeeEEeCCC
Q 027517 26 AVSWSGAKTG--DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK------ACYKNIEWVEGDA 97 (222)
Q Consensus 26 ~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~d~ 97 (222)
+....+..++ .+|||.-+|.|..+..++.. +++|+++|-||-+....+.-+..... ....+++++.+|.
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 4455555555 38999999999999988854 56899999998654443322221111 0114789999998
Q ss_pred CC-cCCCCCceeEEEEcccccC
Q 027517 98 LD-LPFSDCFFDAITMGYGLRN 118 (222)
Q Consensus 98 ~~-~~~~~~~~D~v~~~~~l~~ 118 (222)
.+ +..+..+||+|++--.+.+
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 87 4444678999999776654
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0058 Score=47.65 Aligned_cols=115 Identities=26% Similarity=0.369 Sum_probs=77.0
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCC---CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ---GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF--- 102 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--- 102 (222)
.+...|+.+|||.++.+|.-+..+.+...+. +.+++-|.++.-+............ +++.+...|+...+-
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~---~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS---PNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC---cceeeecccceecccccc
Confidence 4567899999999999999998888876432 3688999998776666655533222 455566666554331
Q ss_pred ------CCCceeEEEEccc------ccCccc-----------------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 103 ------SDCFFDAITMGYG------LRNVVD-----------------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 103 ------~~~~~D~v~~~~~------l~~~~~-----------------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
....||-|++--. +.+-++ .-.++.+-.+.||+||+++-++-+.
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 1235888885222 111111 2467888899999999998866554
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0038 Score=42.12 Aligned_cols=115 Identities=11% Similarity=0.126 Sum_probs=76.7
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.++.++...+..+.+|+|+|.|+.....++. + -..-+|+++++-.+..++-+.-+.+- ..+..|..-|+..++..
T Consensus 63 nVLSll~~n~~GklvDlGSGDGRiVlaaar~-g-~~~a~GvELNpwLVaysrl~a~R~g~--~k~trf~RkdlwK~dl~- 137 (199)
T KOG4058|consen 63 NVLSLLRGNPKGKLVDLGSGDGRIVLAAARC-G-LRPAVGVELNPWLVAYSRLHAWRAGC--AKSTRFRRKDLWKVDLR- 137 (199)
T ss_pred HHHHHccCCCCCcEEeccCCCceeehhhhhh-C-CCcCCceeccHHHHHHHHHHHHHHhc--ccchhhhhhhhhhcccc-
Confidence 3455666677779999999999999887765 2 34789999999888887765544332 36778888888887654
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
.|..|+.+.+-.-+++. -.+++.-++.+..++..-+..++
T Consensus 138 -dy~~vviFgaes~m~dL---e~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 138 -DYRNVVIFGAESVMPDL---EDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred -ccceEEEeehHHHHhhh---HHHHHhhCcCCCeEEEEecCCCc
Confidence 35555554443333433 34455566777777665544443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0048 Score=50.97 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=68.5
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-----------
Q 027517 32 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD----------- 99 (222)
Q Consensus 32 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----------- 99 (222)
..++.+|+=+|||. |..+...++.+ +.+|+++|.+++.++.+++.-. ++...|..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA----------~~v~i~~~e~~~~~~gya~~ 229 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGA----------EFLELDFEEEGGSGDGYAKV 229 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCC----------eEEEeccccccccccchhhh
Confidence 35788999999998 66777778776 4589999999999998887521 111111100
Q ss_pred c--C--------CCC--CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 100 L--P--------FSD--CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 ~--~--------~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
. . +.+ +.+|+|+.......-+.+..+.+++.+.+||||.++..-.
T Consensus 230 ~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 230 MSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 0 011 3589999877654333444446999999999999877654
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.02 Score=40.12 Aligned_cols=140 Identities=17% Similarity=0.187 Sum_probs=86.3
Q ss_pred EecCCCChhHHHHHHHhCCCCcEEEEeCChh--HHHHHh---cchhhhhhhcCCCee-EEeCCCCCcC----CCCCceeE
Q 027517 40 DVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN--QLSMAS---SRQDLVSKACYKNIE-WVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 40 diG~G~G~~~~~l~~~~~~~~~~~~~D~~~~--~~~~~~---~~~~~~~~~~~~~i~-~~~~d~~~~~----~~~~~~D~ 109 (222)
=+|=|.=.++..|++..+....+++.-++.. ..+.-. .++..+.. .++. ....|+.++. ....+||.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~---~g~~V~~~VDat~l~~~~~~~~~~FDr 78 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE---LGVTVLHGVDATKLHKHFRLKNQRFDR 78 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh---cCCccccCCCCCcccccccccCCcCCE
Confidence 3566777788889988754556666654433 222211 22222211 2333 3445777653 24578999
Q ss_pred EEEcccccCc------cc-------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHH
Q 027517 110 ITMGYGLRNV------VD-------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEE 176 (222)
Q Consensus 110 v~~~~~l~~~------~~-------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (222)
|+.+++-.-. .+ ...+++.+..+|+++|.+.|+-...+.
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------------------------- 130 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------------------------- 130 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC----------------------------
Confidence 9998874330 01 256788999999999999876444322
Q ss_pred HHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeee
Q 027517 177 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 221 (222)
++.=++..+.+++||..++..++....+..|..+
T Consensus 131 -----------y~~W~i~~lA~~~gl~l~~~~~F~~~~ypgY~~~ 164 (166)
T PF10354_consen 131 -----------YDSWNIEELAAEAGLVLVRKVPFDPSDYPGYEHK 164 (166)
T ss_pred -----------CccccHHHHHHhcCCEEEEEecCCHHHCCCcccC
Confidence 1111556888899999999988876666555443
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0053 Score=50.03 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=74.2
Q ss_pred CeEEEecCCCChhHHHH---HHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 36 DNVLDVCCGSGDLSFLL---SEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l---~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
..|+=+|+|-|-+.... ++....+.++++++-+|.++-..+.+ .....+ .+|+++..|+.+.+.|..+.|++++
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~--~~Vtii~~DMR~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWD--NRVTIISSDMRKWNAPREQADIIVS 445 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhc--CeeEEEeccccccCCchhhccchHH
Confidence 46788999999776544 33434456899999999988776653 222232 5899999999998755578999885
Q ss_pred --cccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 113 --GYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 113 --~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+++..-+--+..|..+.+.|||+|+-+=..
T Consensus 446 ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 446 ELLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred HhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 3333322223778999999999998876433
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.011 Score=48.95 Aligned_cols=123 Identities=17% Similarity=0.229 Sum_probs=82.4
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCC---CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS---QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
...+.+.+.+...+..+|+|..||+|+......+.+.. ...++|.|+++.....++-+..-.+... .+....+|.
T Consensus 173 ~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~--~~~i~~~dt 250 (489)
T COG0286 173 EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG--DANIRHGDT 250 (489)
T ss_pred HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc--ccccccccc
Confidence 34455666666667779999999999998877776632 2568999999999999988765443221 234444444
Q ss_pred CCcC-C----CCCceeEEEEccccc--Cc-c---------------------c-HHHHHHHHhcccCCCcEEEEEecC
Q 027517 98 LDLP-F----SDCFFDAITMGYGLR--NV-V---------------------D-KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 98 ~~~~-~----~~~~~D~v~~~~~l~--~~-~---------------------~-~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
...| . ...+||.|+++..+. .+ . . ....++++...|+|||+..++-+.
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 3322 1 235699999877664 00 0 0 146789999999998876655443
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0059 Score=45.40 Aligned_cols=109 Identities=15% Similarity=-0.039 Sum_probs=65.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh--hhc-CCCeeEEeCCCCC---cCCCCCc-
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--KAC-YKNIEWVEGDALD---LPFSDCF- 106 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~~~-~~~i~~~~~d~~~---~~~~~~~- 106 (222)
...+|||+|+|+|.-...++.. .+.+|...|..... +..+....... ... ...+.+...+... ..+..+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~--~~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL--LGAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH--hcceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 3557999999999666666654 36688888874432 22222111100 000 0134444333322 2222233
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+|+|++.-++.+......+..-++..|..++.+++...-
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 899999999888877788888888888888865554433
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0059 Score=46.01 Aligned_cols=47 Identities=11% Similarity=0.033 Sum_probs=37.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCC-------CcEEEEeCChhHHHHHhcchhh
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQ-------GKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~-------~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
..+|+|+|+|+|.++..+++.+... .+++.+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3699999999999999998877533 3799999999998888887754
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.014 Score=42.09 Aligned_cols=111 Identities=21% Similarity=0.234 Sum_probs=63.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCC-CCcEEEEeCChhHHHHHhcchhhhh----------------------------
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVS---------------------------- 83 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~---------------------------- 83 (222)
..+-++.|-+||.|.+...+.-..+. -..+++-|+++++++.|++++.-..
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 44568999999999997665433212 2379999999999999987764100
Q ss_pred -----------hhcCCCeeEEeCCCCCcC-----CCCCceeEEEEcccccCccc---------HHHHHHHHhcccCCCcE
Q 027517 84 -----------KACYKNIEWVEGDALDLP-----FSDCFFDAITMGYGLRNVVD---------KRKALEESFRVLKPGSR 138 (222)
Q Consensus 84 -----------~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~~---------~~~~l~~~~~~l~~gG~ 138 (222)
.+........+.|+.+.. ......|+|+.-....++.+ ..++|..+..+|.+++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 111233567778887721 11223699998666554421 46899999999966666
Q ss_pred EEEEe
Q 027517 139 ISVLD 143 (222)
Q Consensus 139 l~i~~ 143 (222)
+.+++
T Consensus 210 V~v~~ 214 (246)
T PF11599_consen 210 VAVSD 214 (246)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66643
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00067 Score=43.39 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=28.0
Q ss_pred ceeEEEEcccccCc------ccHHHHHHHHhcccCCCcEEEEE
Q 027517 106 FFDAITMGYGLRNV------VDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 106 ~~D~v~~~~~l~~~------~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+||+|+|..+--++ +....+++++.+.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998774433 23578999999999999999763
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0064 Score=52.41 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=63.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh------CC-----CCcEEEEeCCh---hHHHHHhcc-----------hhhhh---h
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQV------GS-----QGKVIGLDFSK---NQLSMASSR-----------QDLVS---K 84 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~------~~-----~~~~~~~D~~~---~~~~~~~~~-----------~~~~~---~ 84 (222)
.+.-+|+|+|-|+|.......+.+ ++ ..+++.+|..| +.+..+... ....+ .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 344699999999999887776655 12 23788999644 333322211 00000 0
Q ss_pred --------hcCCCeeEEeCCCCCc-CCCCCceeEEEEcc-cccCcccH--HHHHHHHhcccCCCcEEE
Q 027517 85 --------ACYKNIEWVEGDALDL-PFSDCFFDAITMGY-GLRNVVDK--RKALEESFRVLKPGSRIS 140 (222)
Q Consensus 85 --------~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~-~l~~~~~~--~~~l~~~~~~l~~gG~l~ 140 (222)
...-++++..+|+.+. +.-...+|+++.-. +-..-|+. ..+++.+.+.++|||++.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 0001344666777652 21124589999743 22222332 788999999999999986
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0014 Score=50.03 Aligned_cols=111 Identities=19% Similarity=0.156 Sum_probs=74.1
Q ss_pred CeEEEecCCCChhHHHHHHHhC-------------------CCCcEEEEeCCh--hHHHHHhcchhhh------------
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVG-------------------SQGKVIGLDFSK--NQLSMASSRQDLV------------ 82 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~-------------------~~~~~~~~D~~~--~~~~~~~~~~~~~------------ 82 (222)
.+||.||.|.|.-...++..+. +...++.+|+.+ ..++.........
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 6999999999888777776650 113799999865 3333322222111
Q ss_pred --hhhcCCCeeEEeCCCCCcCCC-------CCceeEEEEcccccCc-----ccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 83 --SKACYKNIEWVEGDALDLPFS-------DCFFDAITMGYGLRNV-----VDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 83 --~~~~~~~i~~~~~d~~~~~~~-------~~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.....-++.|.+.|+.....+ .+..++|...+.++.+ +...++|.++-..++||..|+|+|...
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 112224678899998875432 1246888877776644 345788999999999999999987543
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0032 Score=50.13 Aligned_cols=106 Identities=21% Similarity=0.187 Sum_probs=75.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~ 112 (222)
.+.+|||.=||+|.=+.+.+..++...+|+.-|+++++++..+++....+... .++++...|+..+- .....||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-ERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-CCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-ceEEEehhhHHHHhhhccccCCEEEe
Confidence 34589999999999999998886444589999999999999999976655432 25788888887642 23567999976
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..+-.+..++....+.++.||.|.++..
T Consensus 128 ----DPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 128 ----DPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ------SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred ----CCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 2334567788889999999999988653
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0034 Score=47.38 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=80.5
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCcC--CCCCce
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLP--FSDCFF 107 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~--~~~~~~ 107 (222)
..+..++||-+|.|.|...+...++ ..-.++..+|++...++..++....... -..+++.+..+|-..+- ...++|
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 4456779999999999999888877 4445899999999999999987654221 11167888888866532 335789
Q ss_pred eEEEEcccccCccc----HHHHHHHHhcccCCCcEEEEEe
Q 027517 108 DAITMGYGLRNVVD----KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 108 D~v~~~~~l~~~~~----~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|+|+.-..=--.|- ....+..+.+.||+||++....
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 99997332111111 2567888999999999987753
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.05 Score=42.00 Aligned_cols=172 Identities=11% Similarity=-0.045 Sum_probs=101.9
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+.+...+...+... ...|+-+|||--.-..++-. +++..|+-+|. |+.++.-++.+...+........++..|+.+
T Consensus 79 r~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~--~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~ 154 (297)
T COG3315 79 RYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDW--PKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLRE 154 (297)
T ss_pred HHHHHHHHHHHHhc-ccEEEEeccccccceeecCC--CCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccc
Confidence 34444455555444 67899999998666555542 22456777775 7777777777765543333478899999984
Q ss_pred cC---------CCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhH-HHHHHhhcccccc
Q 027517 100 LP---------FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTA-IQEWMIDNVVVPV 167 (222)
Q Consensus 100 ~~---------~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~ 167 (222)
.. +.....-++++-+++.+++. ..+++..+.....||..++.............. ............
T Consensus 155 ~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 233 (297)
T COG3315 155 DDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDL- 233 (297)
T ss_pred cchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccc-
Confidence 21 22344567888888888854 578899999999998888765431111100000 101000000000
Q ss_pred cccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEE
Q 027517 168 ASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKH 207 (222)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 207 (222)
.............+++..+.+.||.....
T Consensus 234 -----------~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 234 -----------DRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred -----------ccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 00001112345789999999999988775
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.2 Score=40.09 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=72.6
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhC------CCCcEEEEeC----ChhHHHHHhcchhhhhhhcCCCeeEE
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG------SQGKVIGLDF----SKNQLSMASSRQDLVSKACYKNIEWV 93 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------~~~~~~~~D~----~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (222)
+.+++.+...+.-+|+|+|.|.|.-...|.+.+. |..++|+++. +...++...+++........-..+|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 3566666666777999999999976665555442 2338999999 78888888888765443322334444
Q ss_pred eC---CCCCc-----CCCCCceeEEEEcccccCccc--------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 94 EG---DALDL-----PFSDCFFDAITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 94 ~~---d~~~~-----~~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.. +.+++ ....+..=+|.+.+.+|++.+ ...+|+.+ +.|+|.-. ++++..
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vv-v~~E~e 245 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVV-VLVEQE 245 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEE-EEEeec
Confidence 42 23332 122233445556677788852 23455544 47888744 444443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.048 Score=42.03 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=72.2
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC--CCCc----
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD--ALDL---- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d--~~~~---- 100 (222)
..-...++.+||-+|+|+ |-.+...++.++. .+|..+|+++.-++.|++ +... .+...... ..++
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~Ga~------~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FGAT------VTDPSSHKSSPQELAELV 234 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-hCCe------EEeeccccccHHHHHHHH
Confidence 344567899999999998 7777888888743 489999999999999998 3211 11111111 1111
Q ss_pred --CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCc
Q 027517 101 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 150 (222)
Q Consensus 101 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~ 150 (222)
......+|+.+-+..++ ..++.....+++||.+++..+......
T Consensus 235 ~~~~g~~~~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~~~~ 280 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGAEEIQ 280 (354)
T ss_pred HhhccccCCCeEEEccCch------HHHHHHHHHhccCCEEEEeccCCCccc
Confidence 12223488888655543 345556778899999988887765443
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.033 Score=44.78 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=69.5
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC----C-c-C
Q 027517 29 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL----D-L-P 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~----~-~-~ 101 (222)
.....++.+||..|||. |..+..+++..+. .+++++|.+++..+.+++... ..++...-. + + .
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~---------~~vi~~~~~~~~~~~l~~ 248 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLG---------AETINFEEVDDVVEALRE 248 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCC---------cEEEcCCcchHHHHHHHH
Confidence 34556788999999988 8888889888532 259999999998888877521 122211111 1 1 1
Q ss_pred C-CCCceeEEEEccc---------------ccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 F-SDCFFDAITMGYG---------------LRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~-~~~~~D~v~~~~~---------------l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
. ..+.+|+|+-.-. ++...+....+..+.+.++++|+++....
T Consensus 249 ~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 249 LTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred HcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 1 2235888876432 11223446678899999999999987653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.018 Score=40.75 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=74.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHh---CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-------CC
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-------FS 103 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~ 103 (222)
.+..|+|+|.--|..+..++... +...+|.++|++-..++.+-... ++|.+++++..+.. ..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~--------p~i~f~egss~dpai~eqi~~~~ 140 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV--------PDILFIEGSSTDPAIAEQIRRLK 140 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC--------CCeEEEeCCCCCHHHHHHHHHHh
Confidence 45689999999988776665432 33468999999876655544332 69999999987742 12
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
++.--+.++..+-|+....-+.++-+..+|.-|-++++.+..-..
T Consensus 141 ~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 141 NEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 222345566677777766667788888899999999887765443
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.012 Score=45.90 Aligned_cols=55 Identities=9% Similarity=0.004 Sum_probs=41.9
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhC-------CCCcEEEEeCChhHHHHHhcchhh
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG-------SQGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
++....++...++|+|+|.|.++..+++.+. ...++..+++|++..+.-++.+..
T Consensus 70 wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 70 WQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3344555566899999999999988877652 245899999999988887777643
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.002 Score=48.40 Aligned_cols=107 Identities=19% Similarity=0.157 Sum_probs=63.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhc-------chhhhhhhcCCCeeEEeCCCCCcCC--C
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS-------RQDLVSKACYKNIEWVEGDALDLPF--S 103 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~d~~~~~~--~ 103 (222)
..+++|||+|||.|-........ ....+...|++.+.+....- .+.....+...-..+...++.+..+ .
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t 192 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHT 192 (282)
T ss_pred ecCceeEecCCcccccchhhhhh--ccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhc
Confidence 35789999999999888877765 23689999998887732110 1100000000011222221112111 1
Q ss_pred C-CceeEEEEcccccCcccHHHH-HHHHhcccCCCcEEEE
Q 027517 104 D-CFFDAITMGYGLRNVVDKRKA-LEESFRVLKPGSRISV 141 (222)
Q Consensus 104 ~-~~~D~v~~~~~l~~~~~~~~~-l~~~~~~l~~gG~l~i 141 (222)
. ..||+|.++-.+........+ .......++++|.+++
T Consensus 193 ~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 193 ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 1 278999998888877666555 5666677888888765
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.047 Score=43.29 Aligned_cols=100 Identities=24% Similarity=0.365 Sum_probs=68.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC-C----c-CC-CC
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL-D----L-PF-SD 104 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~-~----~-~~-~~ 104 (222)
.++.+|+=+|||+ |-.+..+++.++ ..+++.+|.+++-++.|++... ......... + . .. ..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g---------~~~~~~~~~~~~~~~~~~~t~g 236 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGG---------ADVVVNPSEDDAGAEILELTGG 236 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCC---------CeEeecCccccHHHHHHHHhCC
Confidence 3444899999998 777777777753 3589999999999999998542 111111111 1 0 11 12
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
..+|+++=... ....+..+.+.++|||.+++.-.....
T Consensus 237 ~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 237 RGADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 35899985443 245788899999999999888776544
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.017 Score=47.80 Aligned_cols=97 Identities=19% Similarity=0.094 Sum_probs=64.9
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC------------
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD------------ 99 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~------------ 99 (222)
.++.+|+=+|+|. |..+..+++.+ +..++++|.+++.++.++..- ..++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lG----------a~~v~v~~~e~g~~~~gYa~~~ 229 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMG----------AEFLELDFKEEGGSGDGYAKVM 229 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcC----------CeEEeccccccccccccceeec
Confidence 3568999999997 56667777775 457999999999888877631 1121111100
Q ss_pred -----------cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 100 -----------LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 100 -----------~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
++..-..+|+|+....+.--+.+.-+.+++.+.+|||+.++-
T Consensus 230 s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 230 SEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111124589998877555444555678888999999988664
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0044 Score=39.43 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=27.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCCh
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~ 69 (222)
+....+|||||+|-+...|... +..-.|+|...
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 4568999999999999888855 66889999744
|
; GO: 0008168 methyltransferase activity |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.071 Score=39.91 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=60.1
Q ss_pred CCeEEEecCCCChhHHHHHHHh---C-CCCcEEEEeCChh--------------------------HHHHHhcchhhhhh
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV---G-SQGKVIGLDFSKN--------------------------QLSMASSRQDLVSK 84 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~---~-~~~~~~~~D~~~~--------------------------~~~~~~~~~~~~~~ 84 (222)
...|+|+||-.|..+..+...+ + ++.+++++|.-+. .++..++++.+.+.
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 3489999999998776554332 2 3447999983221 23333344433221
Q ss_pred hcCCCeeEEeCCCCCc-C-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 85 ACYKNIEWVEGDALDL-P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 85 ~~~~~i~~~~~d~~~~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
..+++.++.+.+.+. | .+.+++-++.+- ....+....+|+.++..|.|||++++-++..
T Consensus 155 -~~~~v~~vkG~F~dTLp~~p~~~IAll~lD--~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 155 -LDDNVRFVKGWFPDTLPDAPIERIALLHLD--CDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp -SSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred -CcccEEEECCcchhhhccCCCccEEEEEEe--ccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 115789999998763 3 222333332222 1222445788999999999999999977665
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.049 Score=35.95 Aligned_cols=45 Identities=9% Similarity=0.013 Sum_probs=37.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD 80 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (222)
.+++|+|||++-|..+..++-+ + ...|++++.++...+..++...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-G-AK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-G-ASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-C-ccEEEEeccCHHHHHHHHHHhh
Confidence 4679999999999999999866 2 2379999999999988887653
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.049 Score=43.96 Aligned_cols=110 Identities=14% Similarity=0.044 Sum_probs=66.9
Q ss_pred CCeEEEecCCCChh--HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC--cCCC-CCceeE
Q 027517 35 GDNVLDVCCGSGDL--SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LPFS-DCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~G~~--~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~-~~~~D~ 109 (222)
...++|+|+|.|.- +...+-. +....+..||.+..|+............. ....+...-... .|.+ ...||+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr-~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~--g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWR-QTKREYSLVDRSRAMLKQSEKNLRDGSHI--GEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcc-cccceeEeeccchHHHHHHHHhhcChhhc--CchhccccchhcccCCCCcccceee
Confidence 45788888876543 3333322 22447999999999999888776441100 111111101111 2333 344999
Q ss_pred EEEcccccCcccH----HHHHHHHhcccCCCcEEEEEecCCC
Q 027517 110 ITMGYGLRNVVDK----RKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 110 v~~~~~l~~~~~~----~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
|++.+.++++.+. ...-...++..++|+.+++++...+
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 9999999998643 2233445567899999999887654
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.016 Score=44.50 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=40.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD 80 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (222)
..+++.|||.-||+|..+....+. +.+++|+|++++..+.+++++.
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHH
Confidence 367889999999999998876654 5689999999999999999974
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.028 Score=42.99 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=52.2
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC--CCceeEEEEcc
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS--DCFFDAITMGY 114 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~v~~~~ 114 (222)
+++|+-||.|..+.-+.+. + -..+.++|+++.+.+..+.+.. .. .+..|+.++... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~--------~~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFP--------NK-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCC--------CC-CccCccccCchhhcCCCCCEEEeCC
Confidence 6999999999998888765 2 2257899999999988877752 22 566777765422 34699999877
Q ss_pred cccCc
Q 027517 115 GLRNV 119 (222)
Q Consensus 115 ~l~~~ 119 (222)
....+
T Consensus 71 PCq~f 75 (275)
T cd00315 71 PCQPF 75 (275)
T ss_pred CChhh
Confidence 65544
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.067 Score=42.22 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=62.2
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCcee
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 108 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (222)
...++.+||-.|||. |..+..+++.. +. +++++|.+++.++.+++.-... -+.....+..+.....+.+|
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~--G~~~Vi~~~~~~~~~~~a~~lGa~~------vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTL--GAAEIVCADVSPRSLSLAREMGADK------LVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHHHHcCCcE------EecCCcccHHHHhccCCCCC
Confidence 345678999899875 66677777774 44 6899999999888887642100 00110111111111123488
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+|+-... . ...++...+.+++||+++.....
T Consensus 238 ~vid~~G-----~-~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 238 VSFEVSG-----H-PSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred EEEECCC-----C-HHHHHHHHHHhhcCCEEEEEccC
Confidence 8875432 1 34567788899999999887543
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.14 Score=33.43 Aligned_cols=86 Identities=22% Similarity=0.219 Sum_probs=54.7
Q ss_pred CCCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeEEEEccccc
Q 027517 43 CGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAITMGYGLR 117 (222)
Q Consensus 43 ~G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~~~~l~ 117 (222)
||.|..+..+++.+.... +++.+|.+++..+.++.. .+.++.+|..+.. ..-.+.|.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccC--
Confidence 566778887777765555 799999999988887755 4778999988742 22346787777442
Q ss_pred CcccHHHHHHHHhcccCCCcEEEE
Q 027517 118 NVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 118 ~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
-......+....+-+.|...++.
T Consensus 72 -~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 72 -DDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp -SHHHHHHHHHHHHHHTTTSEEEE
T ss_pred -CHHHHHHHHHHHHHHCCCCeEEE
Confidence 11223334444455666667655
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.032 Score=43.85 Aligned_cols=46 Identities=28% Similarity=0.214 Sum_probs=37.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcc
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (222)
...+-..|+|+|+|.|.++..+.-.+ +..|.+||-|....+.|++.
T Consensus 150 ~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 150 DFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred hhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHHH
Confidence 34566799999999999999988654 67999999998777776643
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.019 Score=42.22 Aligned_cols=43 Identities=28% Similarity=0.439 Sum_probs=33.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhc
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 77 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (222)
..++..|||.-||+|..+....+. +.+++|+|++++..+.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 367889999999999999877654 5689999999999988763
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.074 Score=41.73 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=75.9
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEEEc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITMG 113 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 113 (222)
..+|+|.=||+|-=..+++...+ ..+++.-|++|++.+.++++...+.. .+...+..|+..+-.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~---~~~~v~n~DAN~lm~~~~~~fd~IDi- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSG---EDAEVINKDANALLHELHRAFDVIDI- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCc---ccceeecchHHHHHHhcCCCccEEec-
Confidence 67999999999999999988853 33899999999999999999876522 3566666777664322 356888764
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..+-.+..+++...+.++.||.+-++..
T Consensus 128 ---DPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 128 ---DPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred ---CCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 2334456677777788888999988643
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.23 Score=38.87 Aligned_cols=96 Identities=25% Similarity=0.319 Sum_probs=62.5
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-----CCC
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-----PFS 103 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-----~~~ 103 (222)
...++.+||..|+|. |..+..+++.. +.++++++.+++..+.+++.- +..+..+-.. . ...
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g----------~~~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELG----------ADEVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhC----------CCEEEcCCCcCHHHHHHHhc
Confidence 456778899888764 77788888875 567999999998887775421 1111111111 0 122
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+.+|+++.+... ...++.+.+.|+++|.++....
T Consensus 230 ~~~~D~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 230 GGGFDVIFDFVGT------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCCceEEEECCCC------HHHHHHHHHHhhcCCEEEEECC
Confidence 3568988854321 3467788899999999987644
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.064 Score=43.07 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=59.7
Q ss_pred chhhHHHHHHHHhhCCCC------CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCe
Q 027517 17 GQHRIWKRMAVSWSGAKT------GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 90 (222)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~------~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i 90 (222)
.....++..+...+..++ ...|||||+|||-++....+.. .-.|++++.-..|.+.|++-..+.+.+ ++|
T Consensus 43 dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~S--dkI 118 (636)
T KOG1501|consen 43 DRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMS--DKI 118 (636)
T ss_pred cccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCc--cce
Confidence 334455554444443222 2368999999999998888773 337999999999999999877666554 677
Q ss_pred eEEeCCCCCcCC-CCCceeEEEE
Q 027517 91 EWVEGDALDLPF-SDCFFDAITM 112 (222)
Q Consensus 91 ~~~~~d~~~~~~-~~~~~D~v~~ 112 (222)
.++.--..+... +....|+++.
T Consensus 119 ~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 119 NVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eeeccccceeeecCcchhhhhhH
Confidence 777655444321 1123455553
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.075 Score=39.39 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=33.8
Q ss_pred eEEeCCCCCc--CCCCCceeEEEEcccccC---------c--c---c-HHHHHHHHhcccCCCcEEEE
Q 027517 91 EWVEGDALDL--PFSDCFFDAITMGYGLRN---------V--V---D-KRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 91 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~---------~--~---~-~~~~l~~~~~~l~~gG~l~i 141 (222)
+++++|+.+. .++++++|+|++.-...- + . + ....+.+++++|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4556676553 456677888887544320 0 0 1 25788999999999998876
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.039 Score=36.66 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=49.8
Q ss_pred CeeEEeCCCCC-cCCCCCceeEEEEcc-cccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccc
Q 027517 89 NIEWVEGDALD-LPFSDCFFDAITMGY-GLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVV 164 (222)
Q Consensus 89 ~i~~~~~d~~~-~~~~~~~~D~v~~~~-~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 164 (222)
.+.+..+|+.+ ++.-...+|+++.-. +-..-|+ ...+++.+++.++|||.+.-.
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty---------------------- 89 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY---------------------- 89 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe----------------------
Confidence 45677788765 222236799999854 2222233 278999999999999988531
Q ss_pred ccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 165 VPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
-+...+++.|+++||.+.+...+.
T Consensus 90 -----------------------s~a~~Vr~~L~~aGF~v~~~~g~g 113 (124)
T PF05430_consen 90 -----------------------SSAGAVRRALQQAGFEVEKVPGFG 113 (124)
T ss_dssp -------------------------BHHHHHHHHHCTEEEEEEE-ST
T ss_pred -----------------------echHHHHHHHHHcCCEEEEcCCCC
Confidence 123467899999999987766554
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.18 Score=33.54 Aligned_cols=85 Identities=24% Similarity=0.317 Sum_probs=59.2
Q ss_pred CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C-CCCCceeEEEEcccccC
Q 027517 45 SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P-FSDCFFDAITMGYGLRN 118 (222)
Q Consensus 45 ~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~ 118 (222)
-|..+..+++.. +.+++++|.+++-++.+++.- .-.++..+-.++ . .+.+.+|+|+-+-.
T Consensus 2 vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~~G---------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 2 VGLMAIQLAKAM--GAKVIATDRSEEKLELAKELG---------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTT---------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS---
T ss_pred hHHHHHHHHHHc--CCEEEEEECCHHHHHHHHhhc---------ccccccccccccccccccccccccceEEEEecC---
Confidence 467788888886 379999999999998888752 112232222211 1 23347999986443
Q ss_pred cccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 119 VVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 119 ~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
-...++...+.++++|++++.....
T Consensus 68 ---~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ---SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ---SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ---cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1567888999999999999887765
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.11 Score=37.03 Aligned_cols=107 Identities=12% Similarity=0.081 Sum_probs=60.8
Q ss_pred hHHHHHHHHhhCCCCCC-eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 20 RIWKRMAVSWSGAKTGD-NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+.+...+.+.+...++. .|+.+|||--.....+.... ++..++-+|. |++++..++.+.........+..++..|+.
T Consensus 63 ~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~-~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 140 (183)
T PF04072_consen 63 RYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPA-GGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLR 140 (183)
T ss_dssp HHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTT-TTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TT
T ss_pred HHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccc-cceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEecccc
Confidence 34444455555433444 89999999988887777542 2456777775 566666666665442211134667889988
Q ss_pred CcC---------CCCCceeEEEEcccccCccc--HHHHHHH
Q 027517 99 DLP---------FSDCFFDAITMGYGLRNVVD--KRKALEE 128 (222)
Q Consensus 99 ~~~---------~~~~~~D~v~~~~~l~~~~~--~~~~l~~ 128 (222)
+.. +.....-++++-+++.+++. ...+++.
T Consensus 141 ~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 141 DDSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp SHHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHH
T ss_pred chhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHH
Confidence 621 23445678888888888853 3344443
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.016 Score=46.96 Aligned_cols=105 Identities=19% Similarity=0.244 Sum_probs=78.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----CCCCCceeE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFFDA 109 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~ 109 (222)
++.+|||.=|++|--+++.++.++...++++.|.++..++..+++....... ..++....|+..+ +.....||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~--~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE--DIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch--hhcccccchHHHHHHhccccccccce
Confidence 4568999999999999999999865568999999999999998887654322 3456666676543 222467888
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
|=. ..+-.+..+|+...+.++.||.|.++..
T Consensus 187 IDL----DPyGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 187 IDL----DPYGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred Eec----CCCCCccHHHHHHHHHhhcCCEEEEEec
Confidence 865 2233456788888889999999988653
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.051 Score=40.26 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=40.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 82 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (222)
.++..|||.-||+|.......+. +.+++|+|++++..+.+.+++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 57889999999999998876654 568999999999999999887543
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.074 Score=40.83 Aligned_cols=99 Identities=14% Similarity=0.078 Sum_probs=71.8
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 35 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
+.+|.-||.|. |..+..++-- -++.|+.+|++.+-+......+. .++.....+...+...-.+.|+++..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n~~rl~~ldd~f~-------~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLNIDRLRQLDDLFG-------GRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CccEEEECCccccchHHHHHhc--cCCeeEEEecCHHHHhhhhHhhC-------ceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 45788889886 7777777644 47799999999887776665542 46777776666554334568999875
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
-.+---..+.-+.+++.+.||||+.++=+
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 55544556778889999999999988643
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.58 Score=36.74 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=60.7
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCcee
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 108 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (222)
....++.+||-.|+|. |..+..+++.. +.++++++.+++-++.+++.-. -.++ +..+. ..+.+|
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga---------~~vi--~~~~~--~~~~~d 225 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGA---------ASAG--GAYDT--PPEPLD 225 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCC---------ceec--ccccc--Ccccce
Confidence 4567788999999764 55566777764 5579999999888877766421 0111 11111 123477
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+++-.... ...+....+.+++||++++....
T Consensus 226 ~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G~~ 256 (329)
T TIGR02822 226 AAILFAPA------GGLVPPALEALDRGGVLAVAGIH 256 (329)
T ss_pred EEEECCCc------HHHHHHHHHhhCCCcEEEEEecc
Confidence 66543221 23677888899999999886653
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.1 Score=33.67 Aligned_cols=96 Identities=28% Similarity=0.332 Sum_probs=60.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----CCCCCc
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----PFSDCF 106 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~ 106 (222)
.++.+||..|+|+ |..+..+++.. +.++++++.+++..+.++..- ...++...-.+. ....+.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELG---------ADHVIDYKEEDLEEELRLTGGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhC---------CceeccCCcCCHHHHHHHhcCCC
Confidence 6788999999986 66777777774 468999999887766664431 001111110110 112356
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+|+++.+..- ...+..+.+.++++|.++.....
T Consensus 202 ~d~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 202 ADVVIDAVGG------PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CCEEEECCCC------HHHHHHHHHhcccCCEEEEEccC
Confidence 8999864331 14566777888999998876543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.22 Score=39.48 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=77.7
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh-------hhhhhcCCCeeEEeCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD-------LVSKACYKNIEWVEGD 96 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~d 96 (222)
.-+.+.+...+++...|+|+|-|......+... ....-.|+++.+..-+.+..+.. ..+.. ...+..+.++
T Consensus 182 ~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~-~~~~~~i~gs 259 (419)
T KOG3924|consen 182 RSIVDELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK-PNKIETIHGS 259 (419)
T ss_pred HHHHHHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC-cCceeecccc
Confidence 345566778899999999999999998888763 23356777766544443332211 11211 2457788888
Q ss_pred CCCcCC---CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 97 ALDLPF---SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 97 ~~~~~~---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
..+... -....++|+++++... ++...-+.++..-+++|-+++-...-.+
T Consensus 260 f~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 260 FLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred cCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 776431 1245788888887543 3334445578888899988876655544
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.42 Score=37.74 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=59.2
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 32 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 32 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
..++.+||-+|||. |..+..+++......+++++|.+++-++.+++ . + ..... + +.. ....+|+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~-----~~~~~--~--~~~-~~~g~d~v 226 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D-----ETYLI--D--DIP-EDLAVDHA 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C-----ceeeh--h--hhh-hccCCcEE
Confidence 46788999999876 44555666642223579999999888777764 1 1 11111 1 111 11237888
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+=.-.- +.....+....+.++++|++++.-..
T Consensus 227 iD~~G~---~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 227 FECVGG---RGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred EECCCC---CccHHHHHHHHHhCcCCcEEEEEeec
Confidence 743321 01245677888899999999876543
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.27 Score=42.08 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=63.9
Q ss_pred eEEEecCCCChhHHHHHHHh---CCCCcEEEEeCChhHHHHHhcch-hhhhhh-----cCCCeeEEeCCCCCcCCCC---
Q 027517 37 NVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQ-DLVSKA-----CYKNIEWVEGDALDLPFSD--- 104 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~-~~~~~~-----~~~~i~~~~~d~~~~~~~~--- 104 (222)
.|+=+|+|-|-+.....+.. +-..+++++|-++........+. ....+. ....|+++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999998876555443 33458999999966443333332 111121 0145899999998864321
Q ss_pred --------CceeEEEE--cccccCcccHHHHHHHHhcccCC----CcE
Q 027517 105 --------CFFDAITM--GYGLRNVVDKRKALEESFRVLKP----GSR 138 (222)
Q Consensus 105 --------~~~D~v~~--~~~l~~~~~~~~~l~~~~~~l~~----gG~ 138 (222)
+++|+|++ .+++..-+--+..|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36999996 44444333235667777777776 776
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.92 Score=36.04 Aligned_cols=99 Identities=19% Similarity=0.320 Sum_probs=61.6
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC---CCCC-c-C-
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG---DALD-L-P- 101 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~~-~-~- 101 (222)
....++.+||-.|+|. |..+..+++.. +. +++++|.+++..+.+++.-. -.++.. +..+ + .
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~~Ga---------~~~i~~~~~~~~~~i~~~ 240 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWAREFGA---------THTVNSSGTDPVEAIRAL 240 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcCC---------ceEEcCCCcCHHHHHHHH
Confidence 3456788999999865 66677777774 45 49999999988888765311 111211 1111 0 0
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.....+|+|+-.-. . ...++...+.+++||++++....
T Consensus 241 ~~~~g~d~vid~~g-----~-~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 241 TGGFGADVVIDAVG-----R-PETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred hCCCCCCEEEECCC-----C-HHHHHHHHHHhccCCEEEEECCC
Confidence 12235888875332 1 23566677889999999876543
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.38 Score=38.18 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=59.6
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeC---ChhHHHHHhcchhhhhhhcCCCeeEEe---CCCCCcCCCC
Q 027517 32 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDF---SKNQLSMASSRQDLVSKACYKNIEWVE---GDALDLPFSD 104 (222)
Q Consensus 32 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~---~~~~~~~~~~~~~~~~~~~~~~i~~~~---~d~~~~~~~~ 104 (222)
..++.+||-+|+|. |..+..+++.. +.++++++. +++-++.+++.- ...+. .+..+. ...
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~~G----------a~~v~~~~~~~~~~-~~~ 236 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEELG----------ATYVNSSKTPVAEV-KLV 236 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcC----------CEEecCCccchhhh-hhc
Confidence 35678999999875 66777788775 458999986 566666665431 11111 111110 112
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
..+|+|+-... . ...+....+.++++|.+++.....
T Consensus 237 ~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 237 GEFDLIIEATG-----V-PPLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred CCCCEEEECcC-----C-HHHHHHHHHHccCCcEEEEEecCC
Confidence 35888886442 1 235677888999999988765443
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.16 Score=42.66 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=63.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----C----CC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----P----FS 103 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~----~~ 103 (222)
+.++..|||+||.+|.++...++.++.+.-|+|+|+-|-- ..+++...+.|++.. + ..
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------------p~~~c~t~v~dIttd~cr~~l~k~l~ 107 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------------PIPNCDTLVEDITTDECRSKLRKILK 107 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------------cCCccchhhhhhhHHHHHHHHHHHHH
Confidence 3577799999999999999999998877789999986621 114566666666542 1 11
Q ss_pred CCceeEEEEcccc----cCccc-------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 104 DCFFDAITMGYGL----RNVVD-------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 104 ~~~~D~v~~~~~l----~~~~~-------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.-+.|+|+.-+.- .+..+ ....++-....|+.||.+ ++..+
T Consensus 108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~f-vtkvf 159 (780)
T KOG1098|consen 108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTF-VTKVF 159 (780)
T ss_pred hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcc-ccccc
Confidence 2345888753321 11122 134466666788899995 44333
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.49 Score=31.33 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=49.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~ 112 (222)
+..+|+|+|-|.-......++.. +..++++|+.+. .+. ..+.++..|+.+.... -+..|+|++
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~-----------~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP-----------EGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc-----------cCcceeeecccCCCHHHhcCCcEEEE
Confidence 34599999999866655444443 579999999886 111 3678888898874321 135799998
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
.. --++....+.++.+.+ |.-+++..+...
T Consensus 77 iR---PP~El~~~il~lA~~v--~adlii~pL~~e 106 (127)
T PF03686_consen 77 IR---PPPELQPPILELAKKV--GADLIIRPLGGE 106 (127)
T ss_dssp ES-----TTSHHHHHHHHHHH--T-EEEEE-BTTB
T ss_pred eC---CChHHhHHHHHHHHHh--CCCEEEECCCCC
Confidence 54 3445555666666533 567777666543
|
; PDB: 2K4M_A. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.17 Score=41.22 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=72.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-------CCCCCce
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-------PFSDCFF 107 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~~ 107 (222)
+.++|-+|-|.|.+...+...+ +..++++++++|++++.+.+++..... .+..+...|..+. ...+..|
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~---~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQS---DRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred cCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhh---hhhhhhHhhchHHHHHHhhccccccCC
Confidence 4578888888899988887765 567999999999999999998754322 2233333333321 1134568
Q ss_pred eEEEEcc---cccCccc------HHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 108 DAITMGY---GLRNVVD------KRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 108 D~v~~~~---~l~~~~~------~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
|++..-- -.|-+.. ...++..++..|.|-|.+++.-..+.
T Consensus 372 dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 372 DVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred cEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 9888411 1222211 25679999999999999966544443
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.53 Score=35.70 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=66.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC---CCceeEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS---DCFFDAI 110 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~v 110 (222)
.++.|+=+| .-.++...+..-+...++..+|+++..++..++-....+. .+++.+..|+.+ |+| .++||+.
T Consensus 152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~---~~ie~~~~Dlr~-plpe~~~~kFDvf 225 (354)
T COG1568 152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY---NNIEAFVFDLRN-PLPEDLKRKFDVF 225 (354)
T ss_pred CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc---cchhheeehhcc-cChHHHHhhCCee
Confidence 456788888 3333322222213334899999999999998887765554 579999999887 333 3679988
Q ss_pred EEcccccCcccHHHHHHHHhcccCCC---cEEEEEecC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPG---SRISVLDFN 145 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~g---G~l~i~~~~ 145 (222)
+.-- .+.++....++.+=...||.. |++.++...
T Consensus 226 iTDP-peTi~alk~FlgRGI~tLkg~~~aGyfgiT~re 262 (354)
T COG1568 226 ITDP-PETIKALKLFLGRGIATLKGEGCAGYFGITRRE 262 (354)
T ss_pred ecCc-hhhHHHHHHHHhccHHHhcCCCccceEeeeecc
Confidence 7632 233334455566656667665 667665433
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.1 Score=35.74 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=61.2
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC----c-CC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD----L-PF 102 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----~-~~ 102 (222)
....++.+||=.|+|. |..+..+++.. +. +++++|.+++.++.+++.-. ..++...-.+ + ..
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~~Ga---------~~~i~~~~~~~~~~i~~~ 255 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARELGA---------TATVNAGDPNAVEQVREL 255 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHHcCC---------ceEeCCCchhHHHHHHHH
Confidence 3456788899899875 66667777764 55 69999999988888765411 1112111111 1 01
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
..+.+|+|+-...- ...+....+.++++|+++.....
T Consensus 256 ~~~g~d~vid~~G~------~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 256 TGGGVDYAFEMAGS------VPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred hCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEEccC
Confidence 12258888853221 34566777889999998876543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.084 Score=40.59 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=38.6
Q ss_pred CeeEEeCCCCCc--CCCCCceeEEEEcccccC------c----------ccHHHHHHHHhcccCCCcEEEEE
Q 027517 89 NIEWVEGDALDL--PFSDCFFDAITMGYGLRN------V----------VDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 89 ~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~~------~----------~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+..++++|+.+. .++++++|+|++.-.+.. . .-....+..+.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788888773 355678999998654321 0 00246889999999999999875
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.45 E-value=1.2 Score=34.14 Aligned_cols=98 Identities=18% Similarity=0.091 Sum_probs=60.2
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCC-c-C-CCC
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALD-L-P-FSD 104 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~-~-~-~~~ 104 (222)
...++.+||-.|+|+ |..+..+++.. +.+ ++++|.+++-++.+++.-.. .++. .+..+ . . ...
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~~Ga~---------~~i~~~~~~~~~~~~~~~ 185 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALSFGAT---------ALAEPEVLAERQGGLQNG 185 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHcCCc---------EecCchhhHHHHHHHhCC
Confidence 345788999999875 66667777774 445 88999988887777654210 1111 01000 0 0 112
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
..+|+|+-... . ...++...+.++++|+++.....
T Consensus 186 ~g~d~vid~~G-----~-~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 186 RGVDVALEFSG-----A-TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CCCCEEEECCC-----C-hHHHHHHHHHhcCCCEEEEeccC
Confidence 34888875322 1 34677788899999999876643
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.18 Score=37.04 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=52.2
Q ss_pred CCCeEEEecCCCChhHHHH-HHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCC----cCCCCCce
Q 027517 34 TGDNVLDVCCGSGDLSFLL-SEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALD----LPFSDCFF 107 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~----~~~~~~~~ 107 (222)
+..++||||.|.-..--.+ ... -+.+.+|.|+++..++.|+......+.- ...+..... |-.. +.-.++.|
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~e--YgwrfvGseid~~sl~sA~~ii~~N~~l-~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHE--YGWRFVGSEIDSQSLSSAKAIISANPGL-ERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCccccccccccee--ecceeecCccCHHHHHHHHHHHHcCcch-hhheeEEeccCcccccccccccccee
Confidence 3457899998864332111 222 2568999999999999999877654211 123444332 2111 11235789
Q ss_pred eEEEEcccccCcc
Q 027517 108 DAITMGYGLRNVV 120 (222)
Q Consensus 108 D~v~~~~~l~~~~ 120 (222)
|++.|+-.+|.-.
T Consensus 155 d~tlCNPPFh~s~ 167 (292)
T COG3129 155 DATLCNPPFHDSA 167 (292)
T ss_pred eeEecCCCcchhH
Confidence 9999999998653
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.12 Score=40.27 Aligned_cols=113 Identities=22% Similarity=0.185 Sum_probs=75.0
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhc-------chhhhhhhcCCCeeEEeCCCCCcC
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS-------RQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
.....||+-|+|-=.|||.+....++. ++.|+|.||+-.++...+. ++...+.. ..-+.+..+|....+
T Consensus 203 ~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~-~~fldvl~~D~sn~~ 278 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-SQFLDVLTADFSNPP 278 (421)
T ss_pred hhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc-chhhheeeecccCcc
Confidence 345689999999999999999888765 6789999999888774322 22222211 023456677777655
Q ss_pred C-CCCceeEEEEccccc------------------------Cccc---------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 F-SDCFFDAITMGYGLR------------------------NVVD---------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~-~~~~~D~v~~~~~l~------------------------~~~~---------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
. .+..||.|+|--... |.|. ....|.-..+.|..||++++.-+.
T Consensus 279 ~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 279 LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 3 356799999844321 1111 134567778889999999886553
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.6 Score=34.24 Aligned_cols=99 Identities=22% Similarity=0.263 Sum_probs=60.3
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC---CCCCc-C-
Q 027517 29 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG---DALDL-P- 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~- 101 (222)
.....++.+||=.|+|. |..+..+++.. +.+ +++++.+++..+.+++.-. -.++.. +...+ .
T Consensus 158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~~ga---------~~~i~~~~~~~~~~~~~ 226 (339)
T cd08239 158 RVGVSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKALGA---------DFVINSGQDDVQEIREL 226 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhCC---------CEEEcCCcchHHHHHHH
Confidence 34556788999998865 55666777775 456 9999998888777754311 111111 10011 1
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.....+|+|+-... . ...+....+.|+++|++++...
T Consensus 227 ~~~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 227 TSGAGADVAIECSG-----N-TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred hCCCCCCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 12235898885332 1 3345666778999999987654
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.45 Score=32.39 Aligned_cols=106 Identities=15% Similarity=0.073 Sum_probs=51.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PF 102 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~ 102 (222)
.++.......+ .-|||+|=|+|..-.++.+.+ ++.+++++|-.-... ....+ +.-.++.+|+.+. +.
T Consensus 19 ~~a~~~v~~~~-G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~l~~h------p~~~P----~~~~~ilGdi~~tl~~ 86 (160)
T PF12692_consen 19 NWAAAQVAGLP-GPVLELGLGNGRTYDHLREIF-PDRRIYVFDRALACH------PSSTP----PEEDLILGDIRETLPA 86 (160)
T ss_dssp HHHHHHTTT---S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-------GGG-------GGGEEES-HHHHHHH
T ss_pred HHHHHHhcCCC-CceEEeccCCCccHHHHHHhC-CCCeEEEEeeecccC------CCCCC----chHheeeccHHHHhHH
Confidence 33444444444 479999999999999999998 677999999532211 11111 3346778887663 21
Q ss_pred ---CCCceeEEEEcccccCccc----HHHHHHHHhcccCCCcEEEE
Q 027517 103 ---SDCFFDAITMGYGLRNVVD----KRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 103 ---~~~~~D~v~~~~~l~~~~~----~~~~l~~~~~~l~~gG~l~i 141 (222)
-..+.-++-+-..-++-.. ...+-.-+..+|.|||.++-
T Consensus 87 ~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 87 LARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 1223333333333332221 11223345668999999864
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.49 Score=35.62 Aligned_cols=88 Identities=11% Similarity=0.108 Sum_probs=61.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++..-.|+|+-+|+++..+.++ +..|+++|.-+ |.+..-.. ..|+....|-..+.....+.|-.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~-ma~sL~dt---------g~v~h~r~DGfk~~P~r~~idWmV 275 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGP-MAQSLMDT---------GQVTHLREDGFKFRPTRSNIDWMV 275 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccch-hhhhhhcc---------cceeeeeccCcccccCCCCCceEE
Confidence 467889999999999999999866 56899999643 22221111 467777778776543345689888
Q ss_pred EcccccCcccHHHHHHHHhcccCCC
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPG 136 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~g 136 (222)
|..+ +.+.++-..+..+|..|
T Consensus 276 CDmV----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 276 CDMV----EKPARVAALIAKWLVNG 296 (358)
T ss_pred eehh----cCcHHHHHHHHHHHHcc
Confidence 8543 55666666677777644
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.7 Score=34.07 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=58.0
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC---CCCcCCCCCcee
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD---ALDLPFSDCFFD 108 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~~D 108 (222)
++.+||-.|||. |..+..+++.. +. ++++++.+++..+.+++.-. -.++..+ ........+.+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~g~---------~~vi~~~~~~~~~~~~~~~~vd 233 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAMGA---------DETVNLARDPLAAYAADKGDFD 233 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcCC---------CEEEcCCchhhhhhhccCCCcc
Confidence 678898888775 66777778774 44 68999988877775554310 0111111 111111123489
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+++-.... ...++...+.|+++|+++...
T Consensus 234 ~vld~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 234 VVFEASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 98864431 235677888999999988654
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=2.5 Score=33.51 Aligned_cols=98 Identities=21% Similarity=0.181 Sum_probs=61.7
Q ss_pred hCCCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC----CCCC-c-C
Q 027517 30 SGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG----DALD-L-P 101 (222)
Q Consensus 30 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----d~~~-~-~ 101 (222)
....++.+||=.|+ | -|..+..+++.. +.++++++.+++..+.+++.+. --.++.. +..+ + .
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~lG--------a~~vi~~~~~~~~~~~i~~ 223 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKLG--------FDEAFNYKEEPDLDAALKR 223 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhcC--------CCEEEECCCcccHHHHHHH
Confidence 45678889999987 3 577888888875 5689999988887776653221 1112211 1111 1 0
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
...+.+|+|+-... ...+....+.++++|++++...
T Consensus 224 ~~~~gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 224 YFPEGIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred HCCCCcEEEEECCC-------HHHHHHHHHHhccCCEEEEECc
Confidence 11235898885332 2356778889999999987643
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=92.97 E-value=1.3 Score=35.99 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=58.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
-++++|+=+|+|. |......++.+ +.+|+++|.++.-.+.++.. ..... +..+. . ...|+|+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~~----------G~~~~--~~~e~-v--~~aDVVI 262 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAME----------GYEVM--TMEEA-V--KEGDIFV 262 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHhc----------CCEEc--cHHHH-H--cCCCEEE
Confidence 4688999999998 66666666664 56899999998877766543 11111 11111 1 2469988
Q ss_pred EcccccCcccHHHHHH-HHhcccCCCcEEEEEecC
Q 027517 112 MGYGLRNVVDKRKALE-ESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~-~~~~~l~~gG~l~i~~~~ 145 (222)
..-. . ..++. ...+.+|+||+++.....
T Consensus 263 ~atG-----~-~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 263 TTTG-----N-KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ECCC-----C-HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 6432 2 23444 347899999999776543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.21 Score=40.02 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=54.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
++.+|+=+|+|. |..+...++.+ +.+|+.+|.+++..+.+..... ..+.....+..++...-..+|+|+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEE
Confidence 345799999985 66666667665 4589999998876655543321 1111111111111101135799997
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.-.....+.+.-+-++..+.++|++.++-.
T Consensus 237 a~~~~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 237 AVLIPGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred ccccCCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 543211111221234555667999876654
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.34 Score=38.82 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=49.5
Q ss_pred CCeeEEeCCCCCcC--CCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 88 KNIEWVEGDALDLP--FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 88 ~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
+++.+...++.+.. .+++++|.++......++++ ....++.+.+.++|||+++.-....+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 68999999988742 45688999999999998864 57789999999999999988665543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.1 Score=34.81 Aligned_cols=88 Identities=19% Similarity=0.120 Sum_probs=55.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
++.+||=+|||. |.++..+++.. +.+ +.++|.+++.++.+.... ++ |..+. ....+|+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~--G~~~v~~~~~~~~rl~~a~~~~------------~i--~~~~~--~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA--GGSPPAVWETNPRRRDGATGYE------------VL--DPEKD--PRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHhhhhcc------------cc--Chhhc--cCCCCCEEE
Confidence 466888889875 67777788775 444 777888777665554320 11 11110 123588888
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
-+-.- ...+....+.++++|++++.-..
T Consensus 206 d~~G~------~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 206 DASGD------PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred ECCCC------HHHHHHHHHhhhcCcEEEEEeec
Confidence 54321 34567788899999999876543
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=92.30 E-value=4.4 Score=31.60 Aligned_cols=98 Identities=16% Similarity=0.087 Sum_probs=61.6
Q ss_pred HhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC----CCC-c
Q 027517 28 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD----ALD-L 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d----~~~-~ 100 (222)
......++.+||=.|+ |-|..+..+++.. +.++++++.+++..+.+++.-. -.++..+ ..+ .
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa---------~~vi~~~~~~~~~~~~ 200 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGF---------DVAFNYKTVKSLEETL 200 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCC---------CEEEeccccccHHHHH
Confidence 3445678889998884 3577888888875 5689999988887777755311 1111111 111 0
Q ss_pred -CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
....+.+|+|+-... ...+....+.++++|+++...
T Consensus 201 ~~~~~~gvdvv~d~~G-------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 201 KKASPDGYDCYFDNVG-------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred HHhCCCCeEEEEECCC-------HHHHHHHHHHhCcCcEEEEec
Confidence 111245898885332 124577888999999998754
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.9 Score=32.48 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=49.8
Q ss_pred hCCCCCCeEEEecCCCCh--h--HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 30 SGAKTGDNVLDVCCGSGD--L--SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~--~--~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
+..+-..+||-+|+|+-. . +..+.+.++.++-++-.|+.+-.- +.-..+.+|...+..+ .
T Consensus 57 laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS---------------Da~~~~~~Dc~t~~~~-~ 120 (299)
T PF06460_consen 57 LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS---------------DADQSIVGDCRTYMPP-D 120 (299)
T ss_dssp ----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B----------------SSSEEEES-GGGEEES-S
T ss_pred EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc---------------ccCCceeccccccCCC-C
Confidence 345667899999999732 2 445566665555666777644210 2345677888776544 6
Q ss_pred ceeEEEEccc---ccCc-----c--c-HHHHHHHHhcccCCCcEEEE
Q 027517 106 FFDAITMGYG---LRNV-----V--D-KRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 106 ~~D~v~~~~~---l~~~-----~--~-~~~~l~~~~~~l~~gG~l~i 141 (222)
++|+|++-.- ..+. . . ..-+..-++..|+-||.+.+
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvai 167 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAI 167 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEE
T ss_pred cccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEE
Confidence 7999998543 0111 0 1 23445667778999999877
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=2.8 Score=33.06 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=58.9
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC---CCc--CC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA---LDL--PF 102 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---~~~--~~ 102 (222)
....++.+||=.|+|+ |..+..+++.. +.+ +++++.+++..+.+++.-. -.++..+- ..+ ..
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~Ga---------~~~i~~~~~~~~~~~~~~ 224 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKSLGA---------MQTFNSREMSAPQIQSVL 224 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHcCC---------ceEecCcccCHHHHHHHh
Confidence 3456788999999875 66667777775 455 7899988888777654311 11111110 011 01
Q ss_pred CCCcee-EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFD-AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D-~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
....+| +|+-+-. . ...+....+.+++||.+++....
T Consensus 225 ~~~~~d~~v~d~~G-----~-~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 225 RELRFDQLILETAG-----V-PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred cCCCCCeEEEECCC-----C-HHHHHHHHHHhhcCCEEEEEccC
Confidence 223466 5543221 1 34677788899999999887543
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.64 Score=35.18 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=30.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhC----CCCcEEEEeCCh
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVG----SQGKVIGLDFSK 69 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~~~~~D~~~ 69 (222)
.+...++|+|||.|.++..++..+. +...++.||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 5677999999999999999998863 235789999644
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=91.87 E-value=3 Score=33.47 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=61.1
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC-----CCC-c-
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD-----ALD-L- 100 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-----~~~-~- 100 (222)
....++.+||=+|+|. |..+..+++.. +. +|+++|.+++.++.+++.-. -.++... ..+ +
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~~Ga---------~~~i~~~~~~~~~~~~v~ 262 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKEMGI---------TDFINPKDSDKPVHERIR 262 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHHcCC---------cEEEecccccchHHHHHH
Confidence 4567788999999875 66667777774 45 69999999988888865411 1122111 111 0
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
....+.+|+|+-...- ...+......+++| |++++....
T Consensus 263 ~~~~~g~dvvid~~G~------~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 263 EMTGGGVDYSFECAGN------VEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred HHhCCCCCEEEECCCC------hHHHHHHHHhhhcCCCEEEEEccC
Confidence 0111258888753321 24566666778886 988776543
|
|
| >PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.41 Score=31.95 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=29.9
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEe
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 219 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 219 (222)
.-+++++++.+++++||+++..+..+.+.+.+++
T Consensus 94 ~Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l~L 127 (127)
T PF10017_consen 94 YKYSPEEFEALAEQAGLEVEKRWTDPKGDFSLYL 127 (127)
T ss_pred eCcCHHHHHHHHHHCCCeeEEEEECCCCCeEEEC
Confidence 4679999999999999999999999988877653
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=91.66 E-value=4.1 Score=31.68 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=61.5
Q ss_pred HhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 28 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
......++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++.- --.++...-.++
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~~G---------a~~vi~~~~~~~~~~v~ 205 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKELG---------FDAVFNYKTVSLEEALK 205 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcC---------CCEEEeCCCccHHHHHH
Confidence 3445677889988884 3467778888875 568999998888777776531 111221111111
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
....+.+|+|+-... ...+....+.++++|+++...
T Consensus 206 ~~~~~gvd~vld~~g-------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 206 EAAPDGIDCYFDNVG-------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HHCCCCcEEEEECCC-------HHHHHHHHHhhccCCEEEEEc
Confidence 111245898885332 245677888999999987653
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=91.46 E-value=3.5 Score=31.19 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=60.0
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCc
Q 027517 29 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 106 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (222)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++.-.. ..+. .. .........
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~g~~------~~~~--~~--~~~~~~~~~ 159 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEALGPA------DPVA--AD--TADEIGGRG 159 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHcCCC------cccc--cc--chhhhcCCC
Confidence 34556788899888875 66677777775 446 99999888887766654200 1111 00 000112345
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+|+++-+..- ...+....+.++++|.++....
T Consensus 160 ~d~vl~~~~~------~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 160 ADVVIEASGS------PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred CCEEEEccCC------hHHHHHHHHHhcCCcEEEEEec
Confidence 8888853221 2356777888999999876543
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.34 Score=37.86 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=50.0
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCceeEEEEc
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAITMG 113 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~ 113 (222)
+++|+-||-|.++.-+.+. + -..+.++|+++.+.+.-+.+. + .....|+.++. ++. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g-~~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-G-FEVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-T-EEEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhc-C-cEEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEec
Confidence 6999999999999988866 2 225889999999888877775 3 77888888764 333 59999976
Q ss_pred ccccCc
Q 027517 114 YGLRNV 119 (222)
Q Consensus 114 ~~l~~~ 119 (222)
.....+
T Consensus 69 pPCQ~f 74 (335)
T PF00145_consen 69 PPCQGF 74 (335)
T ss_dssp ---TTT
T ss_pred cCCceE
Confidence 665544
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.57 Score=35.94 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=24.1
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+.||+|+..+...|+-.+. +..+++|+|.|++-
T Consensus 221 ~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvE 253 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVE 253 (289)
T ss_pred CCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEE
Confidence 4699999877765554333 67788999999764
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=91.21 E-value=2.9 Score=27.26 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=58.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEEEc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITMG 113 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 113 (222)
..+|+|+|-|.=......++. .+..++++|+.+. .+. ..+.+...|+++.... -+..|+|++
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e--~g~dv~atDI~~~---~a~-----------~g~~~v~DDitnP~~~iY~~A~lIYS- 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAE--RGFDVLATDINEK---TAP-----------EGLRFVVDDITNPNISIYEGADLIYS- 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHH--cCCcEEEEecccc---cCc-----------ccceEEEccCCCccHHHhhCccceee-
Confidence 449999999875554433333 2579999999876 111 3678889998885422 134677777
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
+...++....+-++.+.+ |..+++..+...
T Consensus 77 --iRpppEl~~~ildva~aV--ga~l~I~pL~Ge 106 (129)
T COG1255 77 --IRPPPELQSAILDVAKAV--GAPLYIKPLTGE 106 (129)
T ss_pred --cCCCHHHHHHHHHHHHhh--CCCEEEEecCCC
Confidence 444556666666666543 456777665543
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.17 E-value=5.9 Score=30.78 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=29.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHH
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMA 75 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~ 75 (222)
.....|+.+|||.-.+...+..... ....++-+|+++-.....
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 5567899999999888888776631 334677777765443333
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=90.93 E-value=4.6 Score=31.47 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=59.4
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCce
Q 027517 30 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFF 107 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~ 107 (222)
....++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++.-. . .++...-.... ...+.+
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~--------~-~~~~~~~~~~~~~~~~~~ 226 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARKLGA--------D-EVVDSGAELDEQAAAGGA 226 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhCC--------c-EEeccCCcchHHhccCCC
Confidence 455677889999887 466677777764 5689999988887777643210 0 11111100100 012358
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|+++....- ...+....+.|+++|.++...
T Consensus 227 d~vi~~~~~------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 227 DVILVTVVS------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CEEEECCCc------HHHHHHHHHhcccCCEEEEEC
Confidence 888764221 235677788999999987764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.91 E-value=2.5 Score=33.73 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeE
Q 027517 32 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDA 109 (222)
Q Consensus 32 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~ 109 (222)
..++.+||-.|+|. |..+..+++.. +.++++++.+++....+.+.+ + --.++. .+...+....+.+|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~~~~---G-----a~~vi~~~~~~~~~~~~~~~D~ 250 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAINRL---G-----ADSFLVSTDPEKMKAAIGTMDY 250 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHHHhC---C-----CcEEEcCCCHHHHHhhcCCCCE
Confidence 35678888899875 66777778775 557888887765433222111 1 001111 111111100124788
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
|+-... . ...+....+.++++|+++....
T Consensus 251 vid~~g-----~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 251 IIDTVS-----A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred EEECCC-----C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 875332 1 3356778889999999887653
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.81 E-value=1 Score=36.13 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=40.0
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
-.+.+.+.|+++||-|.+|.......+.+. | .+|++||++|..+...+-+.+.
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~--P-~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNALDYLLAG--P-KRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCchHHHHHhcC--C-ceEEEEeCCHHHHHHHHHHHHH
Confidence 345667889999999997766666655532 3 4999999999998887766654
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.81 E-value=1.5 Score=33.73 Aligned_cols=106 Identities=21% Similarity=0.176 Sum_probs=60.7
Q ss_pred CeEEEecCCC-Chh-HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeEEEE
Q 027517 36 DNVLDVCCGS-GDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAITM 112 (222)
Q Consensus 36 ~~vLdiG~G~-G~~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~~ 112 (222)
.+|+-+|.|. |.. +..+.+. +....+++.|.+...++.+... .+.... .+... ......|+|+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a~~l----------gv~d~~~~~~~~--~~~~~aD~Viv 70 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRSAATLKAALEL----------GVIDELTVAGLA--EAAAEADLVIV 70 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc-CCeEEEEeecCcHHHHHHHhhc----------Ccccccccchhh--hhcccCCEEEE
Confidence 4788888885 444 4444443 4555688999888887777654 222211 11111 11244799998
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWM 159 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~ 159 (222)
.-.+. ....+++++...|++|..+. +...........+....
T Consensus 71 avPi~---~~~~~l~~l~~~l~~g~iv~--Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 71 AVPIE---ATEEVLKELAPHLKKGAIVT--DVGSVKSSVVEAMEKYL 112 (279)
T ss_pred eccHH---HHHHHHHHhcccCCCCCEEE--ecccccHHHHHHHHHhc
Confidence 66544 34677888888888876553 33333333334444333
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.76 E-value=5.1 Score=31.51 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=60.9
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC------
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD------ 99 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~------ 99 (222)
......++.+||-.|+|. |..+..+++.. +.+ ++.++.+++..+.+++.- .-.++..+-.+
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~~g---------~~~vi~~~~~~~~~~~~ 224 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKELG---------ATHTVNVRTEDTPESAE 224 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcC---------CcEEeccccccchhHHH
Confidence 344567788888888765 66777778775 456 888888777766664431 11111111111
Q ss_pred -c--CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 100 -L--PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 -~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+ ....+.+|+|+-+..- ...+....+.++++|+++....
T Consensus 225 ~~~~~~~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 225 KIAELLGGKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred HHHHHhCCCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 1223458999864331 2256778889999999876543
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.9 Score=33.58 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=59.5
Q ss_pred CCCCCCeEEEecCC-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC--CCCCcC----CC
Q 027517 31 GAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG--DALDLP----FS 103 (222)
Q Consensus 31 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--d~~~~~----~~ 103 (222)
...|+.+|--.|.| -|..+..+++++ +.+|+++|-+..--+.+-+++.+ . .|+.. |-.... .-
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea~~~LGA-------d-~fv~~~~d~d~~~~~~~~~ 247 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEAIKSLGA-------D-VFVDSTEDPDIMKAIMKTT 247 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHHHHhcCc-------c-eeEEecCCHHHHHHHHHhh
Confidence 44688887777754 699999999997 67999999987555555554421 1 12211 111111 11
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
+.-.|-|... ....+..+.+.||++|.++++.....
T Consensus 248 dg~~~~v~~~--------a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 248 DGGIDTVSNL--------AEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred cCcceeeeec--------cccchHHHHHHhhcCCEEEEEeCcCC
Confidence 1223333322 13446668889999999998766543
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.51 E-value=1.8 Score=30.89 Aligned_cols=100 Identities=16% Similarity=0.055 Sum_probs=57.5
Q ss_pred eEEEecCCCCh-hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh--------------hhcCCCeeEEeCCCCCcC
Q 027517 37 NVLDVCCGSGD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--------------KACYKNIEWVEGDALDLP 101 (222)
Q Consensus 37 ~vLdiG~G~G~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--------------~~~~~~i~~~~~d~~~~~ 101 (222)
+|.=+|+|+-+ -...++.. .+.+|..+|.+++.++.++++....- .....++. ...|+.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh
Confidence 46668988733 33333333 36799999999999988887654310 00012333 334444432
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..|+|+=.- .+.++-...+++++.+.++|+-.+.-...
T Consensus 78 ----~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 78 ----DADLVIEAI-PEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp ----TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred ----hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 468777433 34445567899999999999888765443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=90.43 E-value=5.2 Score=31.34 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=61.5
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCe-eEEeCCCCC-c--CC
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGDALD-L--PF 102 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~--~~ 102 (222)
......++.+||-.|+|. |..+..+++.. +.+++++..+++..+..++.-. ..+ .....+..+ + ..
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~~g~-------~~v~~~~~~~~~~~l~~~~ 223 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARELGA-------DDTINVGDEDVAARLRELT 223 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHHhCC-------CEEecCcccCHHHHHHHHh
Confidence 344567788999998764 67777888875 5688888877777766644310 011 111111111 1 01
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+...+|+++.+..- ...+..+.+.|+++|.++....
T Consensus 224 ~~~~vd~vld~~g~------~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 224 DGEGADVVIDATGN------PASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred CCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEcC
Confidence 23458999875321 3456778889999999876543
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.75 Score=35.30 Aligned_cols=126 Identities=14% Similarity=0.191 Sum_probs=71.4
Q ss_pred HHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHH-HHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhc
Q 027517 8 LQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC 86 (222)
Q Consensus 8 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (222)
|-...+++++.-.... .+..+. ..+..|+|+=+|-|+++. .+... ....|.++|.+|..++..++.+......
T Consensus 171 d~t~~MFS~GN~~EK~-Rv~~~s--c~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~- 244 (351)
T KOG1227|consen 171 DPTKTMFSRGNIKEKK-RVLNTS--CDGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVM- 244 (351)
T ss_pred chhhhhhhcCcHHHHH-Hhhhcc--cccchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchH-
Confidence 4444455555543322 222222 224689999999999998 44443 2237999999999999999887654322
Q ss_pred CCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-c-EEEEEecC
Q 027517 87 YKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-S-RISVLDFN 145 (222)
Q Consensus 87 ~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G-~l~i~~~~ 145 (222)
.+.....+|-... -+....|-|.....-. -++-.--..++|||. | ++=|.+-.
T Consensus 245 -~r~~i~~gd~R~~-~~~~~AdrVnLGLlPS----se~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 245 -DRCRITEGDNRNP-KPRLRADRVNLGLLPS----SEQGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred -HHHHhhhcccccc-Cccccchheeeccccc----cccchHHHHHHhhhcCCcEEEEeccc
Confidence 2333344444333 3345678887755433 233333344556664 4 44444433
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.12 E-value=5.4 Score=31.12 Aligned_cols=100 Identities=24% Similarity=0.248 Sum_probs=60.8
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----C
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----P 101 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~ 101 (222)
......++.+||-.|+|. |..+..+++.. +.+ ++.++.+++..+.+++... . .++..+-.+. .
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~g~--------~-~~~~~~~~~~~~~~~ 221 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKKLGA--------T-ETVDPSREDPEAQKE 221 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCC--------e-EEecCCCCCHHHHHH
Confidence 344556788999998653 56667777764 445 8888888887776644310 1 1222111111 1
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
...+.+|+++.+.. ....+....+.|+++|+++....
T Consensus 222 ~~~~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 222 DNPYGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred hcCCCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 12346899986432 13467777888999999877644
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=90.07 E-value=8.2 Score=31.27 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=62.3
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC---CCCC-cC--
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG---DALD-LP-- 101 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~~-~~-- 101 (222)
....++.+||=.|+|. |..+..+++.. +.+ ++..|.+++-++.+++.-. . .+... +..+ +.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~--Ga~~vi~~d~~~~r~~~a~~~Ga--------~-~v~~~~~~~~~~~v~~~ 249 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLL--GAAVVIVGDLNPARLAQARSFGC--------E-TVDLSKDATLPEQIEQI 249 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHHHHHcCC--------e-EEecCCcccHHHHHHHH
Confidence 4456778888788875 66667777775 344 6667888878877776421 1 11111 1111 10
Q ss_pred CCCCceeEEEEcccccC-------c-ccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSDCFFDAITMGYGLRN-------V-VDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~-------~-~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.....+|+++-.-.-.. . .+....++...+.+++||++++.-..
T Consensus 250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 12235898885333210 0 12235788888999999999886654
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.61 Score=35.91 Aligned_cols=97 Identities=16% Similarity=0.025 Sum_probs=53.4
Q ss_pred CeEEEecCCCChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh---------------cCCCeeEEeCCCCC
Q 027517 36 DNVLDVCCGSGDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA---------------CYKNIEWVEGDALD 99 (222)
Q Consensus 36 ~~vLdiG~G~G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~---------------~~~~i~~~~~d~~~ 99 (222)
.+|.=||+|.-... ...+.. .+.+|+.+|.+++.++.++++....... ...++.+ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 46888899863332 222222 3568999999999888877653211000 0012222 223222
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
. -...|+|+..-. ....-...+++++...++++-.+
T Consensus 81 a---~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 81 A---VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred H---hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEE
Confidence 1 134688886432 22223466778888888776654
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=5.7 Score=30.23 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=58.6
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C----CCCce
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----SDCFF 107 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~~~~ 107 (222)
.+|=-|+ |.....+++.+..+.+|+.+|.+++.++...+.+...+ .++.++..|+.+.. + ..+..
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG----FDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 4555554 46778888777666789999988766555443332211 35777888887631 0 11458
Q ss_pred eEEEEcccccCcc-cH-----------HHHHHHHhcccCCCcEEEE
Q 027517 108 DAITMGYGLRNVV-DK-----------RKALEESFRVLKPGSRISV 141 (222)
Q Consensus 108 D~v~~~~~l~~~~-~~-----------~~~l~~~~~~l~~gG~l~i 141 (222)
|+++.+....... +. ..+++.+.+.++++|..++
T Consensus 78 d~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 78 TGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred CEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 9999877654221 11 2335556666666665444
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.68 Score=36.74 Aligned_cols=69 Identities=22% Similarity=0.373 Sum_probs=54.7
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.+...++..|+|..|-.|--+.+++..+.+.+++.++|.+.+-.+.-++.+...+. ..++...+|+..+
T Consensus 208 ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~---~~~~~~~~df~~t 276 (413)
T KOG2360|consen 208 LLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV---SIVESVEGDFLNT 276 (413)
T ss_pred hcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC---CccccccccccCC
Confidence 44556778999999999999999999887788999999999888777776654442 4566667777764
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.86 Score=35.67 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=48.3
Q ss_pred EEEecCCCChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEEEccc
Q 027517 38 VLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITMGYG 115 (222)
Q Consensus 38 vLdiG~G~G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 115 (222)
|+|+-||.|.++.-+.+. +.+ +.++|+++.+.+.-+.+. +. .+...|+.++... -..+|+++....
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~--------~~-~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANF--------GN-KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhC--------CC-CCCccChhhhhhhhCCCcCEEEecCC
Confidence 689999999999888754 455 568999999888877664 22 4455677665421 235799987655
Q ss_pred ccCc
Q 027517 116 LRNV 119 (222)
Q Consensus 116 l~~~ 119 (222)
...+
T Consensus 69 Cq~f 72 (315)
T TIGR00675 69 CQPF 72 (315)
T ss_pred Cccc
Confidence 4443
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.74 Score=31.85 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=25.1
Q ss_pred EecCCCC--hhHHHHH-HHhCCCCcEEEEeCChhHHHHHhcc
Q 027517 40 DVCCGSG--DLSFLLS-EQVGSQGKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 40 diG~G~G--~~~~~l~-~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (222)
|+|++.| ..+..+. +...+..+++++|.++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 2345677899999999988888777
|
; PDB: 2PY6_A. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=89.62 E-value=7 Score=30.71 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=58.0
Q ss_pred CCCCC--CeEEEecC--CCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 31 GAKTG--DNVLDVCC--GSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 31 ~~~~~--~~vLdiG~--G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
...++ .+||=.|+ |.|..+..+++.. +. ++++++.+++..+.+++.+.. -.++...-.++
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~lGa--------~~vi~~~~~~~~~~i~ 218 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSELGF--------DAAINYKTDNVAERLR 218 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhcCC--------cEEEECCCCCHHHHHH
Confidence 34444 78988886 3577778888875 55 799999888777766553211 11221111111
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
....+.+|+|+-... . ..+....+.|+++|+++...
T Consensus 219 ~~~~~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 219 ELCPEGVDVYFDNVG-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred HHCCCCceEEEECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence 011245898885332 1 12467788899999988653
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.49 E-value=7.7 Score=31.00 Aligned_cols=99 Identities=14% Similarity=0.227 Sum_probs=60.5
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CC----CCC-c-
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GD----ALD-L- 100 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d----~~~-~- 100 (222)
....++.+||=.|+|. |..+..+++.. +. +++++|.+++.++.+++.-. -.++. .+ ..+ +
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~--G~~~Vi~~~~~~~~~~~a~~~Ga---------~~~i~~~~~~~~~~~~v~ 249 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMA--KASRIIAIDINPAKFELAKKLGA---------TDCVNPNDYDKPIQEVIV 249 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHhCC---------CeEEcccccchhHHHHHH
Confidence 4557788999999875 66677777775 45 69999999988888765421 01111 11 000 0
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
....+.+|+|+-.-. . ...+....+.++++ |++++....
T Consensus 250 ~~~~~g~d~vid~~G-----~-~~~~~~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 250 EITDGGVDYSFECIG-----N-VNVMRAALECCHKGWGESIIIGVA 289 (368)
T ss_pred HHhCCCCCEEEECCC-----C-HHHHHHHHHHhhcCCCeEEEEecc
Confidence 011125788875322 1 34566677788886 988776543
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=89.37 E-value=3.8 Score=35.42 Aligned_cols=92 Identities=16% Similarity=0.089 Sum_probs=56.4
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeE
Q 027517 35 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~ 109 (222)
..+|+=+|||. |.......+. .+.+++.+|.+++.++.+++. ...++.+|..+.. ..-++.|.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRKF----------GMKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhc----------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence 35788899886 5555444443 356899999999998888653 4678889988743 12245787
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
+++... -++....+-...+.+.|+-.++.
T Consensus 468 vvv~~~---d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 468 LINAID---DPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred EEEEeC---CHHHHHHHHHHHHHhCCCCeEEE
Confidence 776431 11222223333444456655554
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.27 E-value=7.5 Score=30.75 Aligned_cols=47 Identities=23% Similarity=0.414 Sum_probs=36.7
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcc
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (222)
....++.+||-.|+|. |..+..+++.. +.+++++|.+++.++.+++.
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh
Confidence 4556788999999976 77777788775 45899999999888877653
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.97 E-value=1.6 Score=32.06 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=42.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+.-...-|++||.|.|+.+..+... .-.+...++.+...+.-.+-..++.+ .+..+..+|+..
T Consensus 47 ~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~----~~~~IHh~D~LR 109 (326)
T KOG0821|consen 47 GNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAP----GKLRIHHGDVLR 109 (326)
T ss_pred cccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCC----cceEEeccccce
Confidence 3334568999999999999999865 23478888888876665554433222 355566666654
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=88.86 E-value=6.1 Score=31.02 Aligned_cols=97 Identities=20% Similarity=0.389 Sum_probs=56.8
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC---CCCC-c--CCC
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG---DALD-L--PFS 103 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~~-~--~~~ 103 (222)
...++.+||..|+|. |..+..+++..+. ..+++++.++...+.+++.- ...++.. +..+ + ..+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~g---------~~~vi~~~~~~~~~~i~~~~~ 233 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEAG---------ATDIINPKNGDIVEQILELTG 233 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHhC---------CcEEEcCCcchHHHHHHHHcC
Confidence 445678888877653 6677777777521 36888887776666555331 1111111 1111 1 012
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+.+|+++-...- ...+....+.|+++|+++...
T Consensus 234 ~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 234 GRGVDCVIEAVGF------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCCCcEEEEccCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 3468988854221 246777888999999987654
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=88.72 E-value=7.7 Score=28.45 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=59.3
Q ss_pred CCCCCCeEEEecCCCCh--hHH--HHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCCCCC
Q 027517 31 GAKTGDNVLDVCCGSGD--LSF--LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSDC 105 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~--~~~--~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~ 105 (222)
.-.+...+++..|+.|. .+. ..+.+ +.+++++.|-.++..+...++.+...+.. +-++++.++..+ +-..-.
T Consensus 38 AG~nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~~--~~vEfvvg~~~e~~~~~~~ 114 (218)
T PF07279_consen 38 AGWNAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGLS--DVVEFVVGEAPEEVMPGLK 114 (218)
T ss_pred ccccceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhcccc--ccceEEecCCHHHHHhhcc
Confidence 33455688999766542 233 33334 45778999988877766666665433221 346888887543 221123
Q ss_pred ceeEEEEcccccCcccHH-HHHHHHhcccCCCcEEEEE
Q 027517 106 FFDAITMGYGLRNVVDKR-KALEESFRVLKPGSRISVL 142 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~-~~l~~~~~~l~~gG~l~i~ 142 (222)
..|.++.-.- ..+.. ++|+.+. +.|.|.+++.
T Consensus 115 ~iDF~vVDc~---~~d~~~~vl~~~~--~~~~GaVVV~ 147 (218)
T PF07279_consen 115 GIDFVVVDCK---REDFAARVLRAAK--LSPRGAVVVC 147 (218)
T ss_pred CCCEEEEeCC---chhHHHHHHHHhc--cCCCceEEEE
Confidence 4788776543 33444 5555433 4456666554
|
The function of this family is unknown. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=88.54 E-value=2.8 Score=36.02 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=55.4
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeEE
Q 027517 36 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 110 (222)
Q Consensus 36 ~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v 110 (222)
.+|+=+|+|. |......... .+.+++.+|.+++.++.+++. ...++.+|..+.. ..-++.|.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~----------g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRKY----------GYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred CCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhC----------CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 4677777665 4433333332 356899999999998887653 4678889988742 122457877
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++... + ++....+-...+.+.|...++...
T Consensus 469 v~~~~--d-~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 469 VITCN--E-PEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred EEEeC--C-HHHHHHHHHHHHHHCCCCeEEEEe
Confidence 76432 1 122222333344566777776543
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=88.52 E-value=11 Score=29.83 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=60.4
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C-
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P- 101 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~- 101 (222)
....++.+||-.|+|. |..+..+++.. +. .++++|.+++..+.+++.- --.++...-.++ .
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~g---------~~~~v~~~~~~~~~~i~~~ 230 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKEYG---------ATDIVDYKNGDVVEQILKL 230 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHcC---------CceEecCCCCCHHHHHHHH
Confidence 4556788899888764 66667777775 44 5899999887777766531 111111111110 1
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.....+|+++-+..- ...+....+.|+++|+++.....
T Consensus 231 ~~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g~~ 268 (351)
T cd08285 231 TGGKGVDAVIIAGGG------QDTFEQALKVLKPGGTISNVNYY 268 (351)
T ss_pred hCCCCCcEEEECCCC------HHHHHHHHHHhhcCCEEEEeccc
Confidence 122458988853321 24577888889999998865443
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.47 E-value=2.2 Score=34.39 Aligned_cols=74 Identities=20% Similarity=0.112 Sum_probs=49.9
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---CCCceeEEE
Q 027517 36 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---SDCFFDAIT 111 (222)
Q Consensus 36 ~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v~ 111 (222)
.+||=||||. |....+.+.+ ....+|+..|-+.+..+.+..... .+++..+.|+.+.+- --..+|+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~-~~d~~V~iAdRs~~~~~~i~~~~~-------~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQ-NGDGEVTIADRSKEKCARIAELIG-------GKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHhhcc-------ccceeEEecccChHHHHHHHhcCCEEE
Confidence 4799999976 5555555444 223699999999888777765531 378889999888531 113459988
Q ss_pred Eccccc
Q 027517 112 MGYGLR 117 (222)
Q Consensus 112 ~~~~l~ 117 (222)
.....+
T Consensus 74 n~~p~~ 79 (389)
T COG1748 74 NAAPPF 79 (389)
T ss_pred EeCCch
Confidence 755433
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=88.42 E-value=11 Score=31.78 Aligned_cols=110 Identities=18% Similarity=0.274 Sum_probs=64.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC---CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCC-CCCcee
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG---SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPF-SDCFFD 108 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~~D 108 (222)
|+..|.|..||+|.+.....+..+ ....++|.+..+.+...++.+........ .......+|... +.. ...+||
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~-~t~~~~~~dtl~~~d~~~~~~~D 295 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY-ANFNIINADTLTTKEWENENGFE 295 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc-cccCcccCCcCCCccccccccCC
Confidence 557899999999999876554332 12368999999999888887642211100 122222333222 111 124577
Q ss_pred EEEEcccccC---------------------cc----cHHHHHHHHhcccCCCcEEEEEec
Q 027517 109 AITMGYGLRN---------------------VV----DKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 109 ~v~~~~~l~~---------------------~~----~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.|+++..+.. ++ .-..++..+...|++||+..++-.
T Consensus 296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 7776543221 11 123567788889999998666543
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.36 E-value=10 Score=29.40 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=58.1
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCce
Q 027517 29 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 107 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (222)
.....++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++. + +.... +.... ...+.+
T Consensus 150 ~~~~~~g~~vlV~g~g~vg~~~~q~a~~~--G~~vi~~~~~~~~~~~~~~~----g------~~~~~-~~~~~-~~~~~~ 215 (319)
T cd08242 150 QVPITPGDKVAVLGDGKLGLLIAQVLALT--GPDVVLVGRHSEKLALARRL----G------VETVL-PDEAE-SEGGGF 215 (319)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHc----C------CcEEe-Ccccc-ccCCCC
Confidence 34556788898888653 55556666664 55799999888888777652 1 11110 11111 223458
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
|+++-... . ...+....+.|+++|.++..
T Consensus 216 d~vid~~g-----~-~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 216 DVVVEATG-----S-PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CEEEECCC-----C-hHHHHHHHHHhhcCCEEEEE
Confidence 98886431 1 33566777889999998863
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=88.06 E-value=1.3 Score=33.55 Aligned_cols=91 Identities=22% Similarity=0.274 Sum_probs=50.9
Q ss_pred HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHH
Q 027517 50 FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129 (222)
Q Consensus 50 ~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~ 129 (222)
..+.+. ++..+|+++|.++..++.+++.- -+.-...+...+ ..+|+|+.+-.+. ....+++++
T Consensus 3 ~aL~~~-g~~~~v~g~d~~~~~~~~a~~~g---------~~~~~~~~~~~~----~~~DlvvlavP~~---~~~~~l~~~ 65 (258)
T PF02153_consen 3 LALRKA-GPDVEVYGYDRDPETLEAALELG---------IIDEASTDIEAV----EDADLVVLAVPVS---AIEDVLEEI 65 (258)
T ss_dssp HHHHHT-TTTSEEEEE-SSHHHHHHHHHTT---------SSSEEESHHHHG----GCCSEEEE-S-HH---HHHHHHHHH
T ss_pred HHHHhC-CCCeEEEEEeCCHHHHHHHHHCC---------CeeeccCCHhHh----cCCCEEEEcCCHH---HHHHHHHHh
Confidence 444444 55679999999999998886552 222222221111 2369999866544 457788999
Q ss_pred hcccCCCcEEEEEecCCCCCchhhHHHHHH
Q 027517 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWM 159 (222)
Q Consensus 130 ~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~ 159 (222)
...+++|..+. |......+....+....
T Consensus 66 ~~~~~~~~iv~--Dv~SvK~~~~~~~~~~~ 93 (258)
T PF02153_consen 66 APYLKPGAIVT--DVGSVKAPIVEAMERLL 93 (258)
T ss_dssp HCGS-TTSEEE--E--S-CHHHHHHHHHHH
T ss_pred hhhcCCCcEEE--EeCCCCHHHHHHHHHhc
Confidence 99898886654 33333334444444433
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.00 E-value=4 Score=31.77 Aligned_cols=90 Identities=20% Similarity=0.135 Sum_probs=50.3
Q ss_pred CCeEEEecCCC-ChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 35 GDNVLDVCCGS-GDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
..+|.=||+|. |... ..+.+. +...+++++|.+++..+.+++.- -......+..+. -...|+|+.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~~~a~~~g---------~~~~~~~~~~~~---~~~aDvVii 72 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETRARARELG---------LGDRVTTSAAEA---VKGADLVIL 72 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhCC---------CCceecCCHHHH---hcCCCEEEE
Confidence 35788999886 3333 333322 22237999999988776665421 111111121111 134798887
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
.-.... ...+++.+...++++..++
T Consensus 73 avp~~~---~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 73 CVPVGA---SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CCCHHH---HHHHHHHHHhhCCCCCEEE
Confidence 654432 3456677777788887553
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=87.96 E-value=11 Score=29.99 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=60.2
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-C----CCC-c-
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-D----ALD-L- 100 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d----~~~-~- 100 (222)
....++.+||=.|+|. |..+..+++.. +. +++++|.+++.++.+++.-. -.++.. + ..+ +
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~--G~~~vi~~~~~~~~~~~~~~lGa---------~~~i~~~~~~~~~~~~v~ 250 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAA--GASRIIGIDINPDKFELAKKFGA---------TDCVNPKDHDKPIQQVLV 250 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHcCC---------CEEEcccccchHHHHHHH
Confidence 4557788999888764 56667777774 45 69999999988887765311 111111 1 101 0
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
....+.+|+|+-... . ...+....+.++++ |+++.....
T Consensus 251 ~~~~~g~d~vid~~g-----~-~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 251 EMTDGGVDYTFECIG-----N-VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred HHhCCCCcEEEECCC-----C-hHHHHHHHHhhccCCCeEEEEccC
Confidence 011235888875322 1 34566677788887 988876543
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=87.89 E-value=12 Score=29.68 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=56.0
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-------c-C-
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-------L-P- 101 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-------~-~- 101 (222)
.++.+||=.|+|. |..+..+++.. +. ++++++.+++..+.+++.- --.++..+-.. + .
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~g---------~~~vi~~~~~~~~~~~~~i~~~ 244 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAREFG---------ADATIDIDELPDPQRRAIVRDI 244 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcC---------CCeEEcCcccccHHHHHHHHHH
Confidence 3677888888764 55666777775 45 7899988887666654321 00111111000 0 0
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+.+.+|+|+-...- ...+....+.++++|+++....
T Consensus 245 ~~~~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 245 TGGRGADVVIEASGH------PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred hCCCCCcEEEECCCC------hHHHHHHHHHhccCCEEEEEcC
Confidence 122458988854321 2356677889999999986543
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=87.62 E-value=10 Score=30.43 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=58.8
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-----CCCC-cC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-----DALD-LP 101 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----d~~~-~~ 101 (222)
....++.+||-.|+|. |..+..+++.. +. .++++|.+++..+.+++.-. -.++.. +... +.
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~--G~~~vi~~~~~~~~~~~a~~lGa---------~~~i~~~~~~~~~~~~v~ 257 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLR--GASQIIGVDINPEKAEKAKTFGV---------TDFINPNDLSEPIQQVIK 257 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHcCC---------cEEEcccccchHHHHHHH
Confidence 3456788999999875 66667777775 44 58899988888777755411 111111 1101 00
Q ss_pred -CCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEec
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 144 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~ 144 (222)
...+.+|+|+-.-. . ...+....+.+++| |++++...
T Consensus 258 ~~~~~g~d~vid~~G-----~-~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 258 RMTGGGADYSFECVG-----D-TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred HHhCCCCCEEEECCC-----C-hHHHHHHHHhhccCCCEEEEECC
Confidence 11125788875332 1 23466677788998 99977543
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=87.61 E-value=12 Score=29.41 Aligned_cols=98 Identities=18% Similarity=0.316 Sum_probs=59.0
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC---CCCc-C-
Q 027517 29 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD---ALDL-P- 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d---~~~~-~- 101 (222)
.....++.+||-.|+|. |..+..+++.. +.+ +++++-+++..+..++.- ...++... ..++ .
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~~~g---------~~~~~~~~~~~~~~~~~~ 222 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVARELG---------ADDTINPKEEDVEKVREL 222 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcC---------CCEEecCccccHHHHHHH
Confidence 34556788899888765 66677777774 455 889988877666654321 11111111 0111 1
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+...+|+++.+.. ....+..+.+.|+++|+++...
T Consensus 223 ~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 223 TEGRGADLVIEAAG------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred hCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 12234899886421 1345677888999999987654
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=87.55 E-value=4.7 Score=33.48 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=33.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcch
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQ 79 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (222)
..+++|+-||.|.+..-+... + ...+.++|+++.+.+.-+.+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHc
Confidence 459999999999999988654 2 225788999998877766553
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.35 E-value=9.6 Score=28.00 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=58.3
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C-----C
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-----S 103 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 103 (222)
+++||-.|++ |.....+++.+ ..+.+|++++-+++..+......... .++.++..|+.+.. . .
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-----GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 5688888875 44444444333 24668999998876655443322111 36788888887632 0 0
Q ss_pred CCceeEEEEcccccCcc---c--------------HHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNVV---D--------------KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~---~--------------~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
-+..|.++.+....... + ...+++.+.+.++++|.+++...
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 12468777655432110 1 12335556666777887766543
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.4 Score=30.14 Aligned_cols=98 Identities=15% Similarity=0.076 Sum_probs=50.4
Q ss_pred EEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCCcCCCCCceeEEEEccc
Q 027517 38 VLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCFFDAITMGYG 115 (222)
Q Consensus 38 vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D~v~~~~~ 115 (222)
|+=+|+|. |.+....+.. .+.+|..+.-++ .++..++.--...... .+..+... .........+++|+|+..--
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIKEQGLTITGPD-GDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHHHHCEEEEETT-EEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhhheeEEEEecc-cceecccccccCcchhccCCCcEEEEEec
Confidence 45567775 4444444433 356899999877 5554333211000000 00001000 01111112467999998542
Q ss_pred ccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 116 LRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 116 l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
- .+...+++.++..+.++..+++.
T Consensus 77 a---~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 77 A---YQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp G---GGHHHHHHHHCTGEETTEEEEEE
T ss_pred c---cchHHHHHHHhhccCCCcEEEEE
Confidence 2 24577889999999999776654
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=87.03 E-value=4.4 Score=32.94 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=55.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..+++|+=+|+|. |......++.+ +.+|+++|.++.....+... ...+ .+..+. . ...|+|+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~----------G~~v--~~leea-l--~~aDVVI 255 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD----------GFRV--MTMEEA-A--KIGDIFI 255 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc----------CCEe--CCHHHH-H--hcCCEEE
Confidence 4688999999998 66666666664 56899999888543333221 1111 122221 1 2468887
Q ss_pred EcccccCcccHHHHHH-HHhcccCCCcEEEEEecC
Q 027517 112 MGYGLRNVVDKRKALE-ESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~-~~~~~l~~gG~l~i~~~~ 145 (222)
..-. . ..++. .....+|+|++++.....
T Consensus 256 taTG-----~-~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 256 TATG-----N-KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred ECCC-----C-HHHHHHHHHhcCCCCcEEEEECCC
Confidence 6332 2 33443 477889999988776544
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=87.00 E-value=13 Score=29.17 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=61.6
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCe-eEEeC-CCCC-c-CC
Q 027517 29 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEG-DALD-L-PF 102 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~-d~~~-~-~~ 102 (222)
.....++.+||=.|+ |-|..+..+++.. +.++++++.+++..+.+++.+.. ..+ ..... +..+ + ..
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~ 217 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNKLGF------DDAFNYKEEPDLDAALKRY 217 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCC------ceeEEcCCcccHHHHHHHh
Confidence 345678889999886 3477778888875 56899988888877777653211 111 11111 1111 0 11
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..+.+|+|+-... ...+....+.|+++|+++...
T Consensus 218 ~~~gvd~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 218 FPNGIDIYFDNVG-------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CCCCcEEEEECCC-------HHHHHHHHHHhccCcEEEEec
Confidence 1245888875332 245677888999999988654
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=86.97 E-value=15 Score=29.96 Aligned_cols=105 Identities=17% Similarity=0.143 Sum_probs=59.2
Q ss_pred CCCCCCeEEEec-CC-CChhHHHHHHHhCCC-CcEEEEeCChhHHHHHhcchhhhhhh-cCCCeeEEeC----CCCC-c-
Q 027517 31 GAKTGDNVLDVC-CG-SGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEG----DALD-L- 100 (222)
Q Consensus 31 ~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~----d~~~-~- 100 (222)
...++.+|+=+| +| -|..+..+++..+.+ .+++++|.+++.++.+++........ + ....++.. +... .
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~G-a~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRG-IELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccC-ceEEEECCCccccHHHHHH
Confidence 456778898887 45 377777777764322 26999999999888887752110000 0 01111211 1111 0
Q ss_pred C-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
. .....+|+|+-... . ...+....+.++++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 0 12235888876321 1 34667778889988876553
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.91 E-value=5.7 Score=30.65 Aligned_cols=97 Identities=11% Similarity=0.090 Sum_probs=54.9
Q ss_pred CeEEEecCCCChh--HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhc--------------CCCeeEEeCCCCC
Q 027517 36 DNVLDVCCGSGDL--SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC--------------YKNIEWVEGDALD 99 (222)
Q Consensus 36 ~~vLdiG~G~G~~--~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~~~d~~~ 99 (222)
.+|-=||+|+-.. +..++. .+.+|+.+|.+++.++.+.++....-... ..+++ ...|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR---AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH
Confidence 4788899996333 333332 46799999999999988766543211000 01122 1223322
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhccc-CCCcEEEE
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVL-KPGSRISV 141 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l-~~gG~l~i 141 (222)
+ ...|+|+-. +.+..+-...++..+.+.+ +|+..+.-
T Consensus 82 ~----~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 82 F----ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred h----CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1 346877754 3344444566777788777 66655543
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=86.68 E-value=4.5 Score=31.37 Aligned_cols=90 Identities=17% Similarity=0.040 Sum_probs=52.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.+.+|+=+|+|. |......++.+ +.+++.+|.+++..+.++.. ...+. +..++...-..+|+|+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~~----------G~~~~--~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITEM----------GLSPF--HLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHc----------CCeee--cHHHHHHHhCCCCEEEE
Confidence 478999999986 44455555554 56999999998765555432 12222 11121111135899998
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.-.. ..+-++..+.++||+.++-.-
T Consensus 217 t~p~------~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 217 TIPA------LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CCCh------hhhhHHHHHcCCCCcEEEEEc
Confidence 5321 123355667788987665443
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.64 E-value=4.3 Score=31.17 Aligned_cols=94 Identities=15% Similarity=0.073 Sum_probs=52.1
Q ss_pred eEEEecCCC--ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh----hhhc----------CCCeeEEeCCCCCc
Q 027517 37 NVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV----SKAC----------YKNIEWVEGDALDL 100 (222)
Q Consensus 37 ~vLdiG~G~--G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~----~~~~----------~~~i~~~~~d~~~~ 100 (222)
+|-=+|+|. +..+..+++ .+.+|+++|.+++.++.++.+.... ...+ ..++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~---~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAV---AGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHH---CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 677889986 333344443 3568999999999887655332111 0000 012221 223222
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
-...|+|+..- .....-...+++++.+.++|+..+
T Consensus 80 ---~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il 114 (282)
T PRK05808 80 ---LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAIL 114 (282)
T ss_pred ---hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEE
Confidence 13468887643 122222357888999888888666
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=86.61 E-value=2.6 Score=33.26 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=53.0
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC--CC-ceeEEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS--DC-FFDAIT 111 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~-~~D~v~ 111 (222)
..+++|+-||-|.+..-+... + -.-+.++|+++.+++.=+.+. +...++..|+...... .. .+|+++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~~a~~ty~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDPPAVATYKANF--------PHGDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-C-CeEEEEEecCHHHHHHHHHhC--------CCCceeechHhhcChhhccccCCCEEE
Confidence 358999999999999887765 2 225789999999888877665 2245566666654321 11 689999
Q ss_pred EcccccCc
Q 027517 112 MGYGLRNV 119 (222)
Q Consensus 112 ~~~~l~~~ 119 (222)
.......+
T Consensus 73 gGpPCQ~F 80 (328)
T COG0270 73 GGPPCQDF 80 (328)
T ss_pred eCCCCcch
Confidence 87776665
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.51 E-value=8.3 Score=30.68 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=55.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeEE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v 110 (222)
.++.+|+-.|+|. |..+..+++.. +.+++.++.+++..+.+.+.+.. . .++. .+...+......+|+|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~~~Ga-------~-~~i~~~~~~~~~~~~~~~D~v 248 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALEHLGA-------D-DYLVSSDAAEMQEAADSLDYI 248 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhcCC-------c-EEecCCChHHHHHhcCCCcEE
Confidence 4677888888765 66677777775 55788888777655444332210 0 1111 1111111011247877
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+-... ....+....+.++++|+++.....
T Consensus 249 id~~g------~~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 249 IDTVP------VFHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred EECCC------chHHHHHHHHHhccCCEEEEECCC
Confidence 75322 123566777889999998876543
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.25 E-value=12 Score=29.79 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=59.5
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC-----CCC-c-
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD-----ALD-L- 100 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-----~~~-~- 100 (222)
....++.+||=.|+|. |..+..+++.. +. ++++++.+++.++.+++.- ...++... ..+ +
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~--G~~~vi~~~~~~~~~~~~~~~G---------a~~~i~~~~~~~~~~~~v~ 251 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIR--GASRIIGVDLNPSKFEQAKKFG---------VTEFVNPKDHDKPVQEVIA 251 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcC---------CceEEcccccchhHHHHHH
Confidence 4567788999998764 56667777774 44 7999999998888775531 11111111 000 0
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
....+.+|+++-... . ...+....+.+++| |++++....
T Consensus 252 ~~~~~~~d~vid~~G-----~-~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 252 EMTGGGVDYSFECTG-----N-IDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred HHhCCCCCEEEECCC-----C-hHHHHHHHHHhhcCCCEEEEECcC
Confidence 011225787774321 1 34566677788996 998776543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.05 E-value=3.7 Score=31.62 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=53.2
Q ss_pred eEEEecCCC-Ch-hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhc--------------CCCeeEEeCCCCCc
Q 027517 37 NVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC--------------YKNIEWVEGDALDL 100 (222)
Q Consensus 37 ~vLdiG~G~-G~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~~~d~~~~ 100 (222)
+|.=||+|. |. .+..+++ .+.+|+.+|.+++.++.+.++........ ..++.. ..+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV---SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 678889885 32 2333332 35689999999999988776432211000 011221 1222211
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
-...|+|+..-. ....-...++.++.+.++|+..+.+.
T Consensus 79 ---~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 79 ---VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred ---hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 134688886432 22222346677888888887655443
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.03 E-value=0.42 Score=38.42 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=50.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..++..|.|+-||-|-++..+++. ++.|++.|.++++++..+.+........ .++++...|+.+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~-~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDP-SAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccch-hheeeecccHHH
Confidence 357889999999999999998865 5899999999999999988765433221 247777777655
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=85.85 E-value=3.3 Score=34.28 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=55.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
-.+++|+=+|+|. |......++.+ +.+|+++|.++.....+... ...+. ++.+. . ...|+|+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~~----------G~~vv--~leEa-l--~~ADVVI 314 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALME----------GYQVL--TLEDV-V--SEADIFV 314 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHhc----------CCeec--cHHHH-H--hhCCEEE
Confidence 3578999999997 66666666654 56899999988643333221 11111 22221 1 2469888
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..-.-. ..+.....+.||+||+++.+..
T Consensus 315 ~tTGt~-----~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 315 TTTGNK-----DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ECCCCc-----cchHHHHHhcCCCCCEEEEcCC
Confidence 733222 2233667778999999987654
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=85.79 E-value=3.7 Score=31.50 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=47.5
Q ss_pred eEEEecCCC-C-hhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 37 NVLDVCCGS-G-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 37 ~vLdiG~G~-G-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
+|.-||+|. | .++..+.+. +.+|+++|.+++.++.+.+.- .+.....+. + . -...|+|+..-
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~a~~~g---------~~~~~~~~~-~--~-~~~aDlVilav 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCERAIERG---------LVDEASTDL-S--L-LKDCDLVILAL 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHCC---------CcccccCCH-h--H-hcCCCEEEEcC
Confidence 566788875 3 344444432 568999999998887766541 111111111 1 1 13469988865
Q ss_pred cccCcccHHHHHHHHhcccCCCc
Q 027517 115 GLRNVVDKRKALEESFRVLKPGS 137 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~gG 137 (222)
... ....+++++...++++.
T Consensus 66 p~~---~~~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 66 PIG---LLLPPSEQLIPALPPEA 85 (279)
T ss_pred CHH---HHHHHHHHHHHhCCCCc
Confidence 432 23456777777777763
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.72 E-value=16 Score=29.15 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=59.2
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCe-eEEeCC--CCC-c-CC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGD--ALD-L-PF 102 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~d--~~~-~-~~ 102 (222)
....++.+||=.|+|. |..+..+++.. +. +++++|.+++..+.+++.-. ..+ .....+ ..+ + ..
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~~~~~ga-------~~~i~~~~~~~~~~~~~~~~ 250 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIA--GASRIIGVDINEDKFEKAKEFGA-------TDFINPKDSDKPVSEVIREM 250 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHcCC-------CcEeccccccchHHHHHHHH
Confidence 3556788999888764 55666777774 45 69999998888877754311 011 111000 000 0 01
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
..+.+|+|+-... . ...+....+.++++ |++++....
T Consensus 251 ~~~g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 251 TGGGVDYSFECTG-----N-ADLMNEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred hCCCCCEEEECCC-----C-hHHHHHHHHhcccCCCEEEEEcCC
Confidence 1235888885322 1 24566777888885 998776543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.70 E-value=15 Score=28.62 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=53.9
Q ss_pred CeEEEecCCC-Chh-HHHHHHHhCCCCcEEEEeCChhHHHHHhcc--hhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 36 DNVLDVCCGS-GDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 36 ~~vLdiG~G~-G~~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.+|+-+|+|. |.+ +..|++. +..|+.++-+++.++..++. +..... ............ +.+.+.+|+|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~~Gl~i~~~---g~~~~~~~~~~~-~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQAGGLTLVEQ---GQASLYAIPAET-ADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhcCCeEEeeC---CcceeeccCCCC-cccccccCEEE
Confidence 4789999996 554 4445433 45899999877666655432 110000 011111111111 11234689888
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
..-=-+ +...+++.+...+.++..++..
T Consensus 76 v~vK~~---~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 76 LACKAY---DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred EECCHH---hHHHHHHHHHhhCCCCCEEEEE
Confidence 744222 3466788888999998876554
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.62 E-value=12 Score=28.14 Aligned_cols=74 Identities=8% Similarity=0.027 Sum_probs=43.6
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C-----C
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-----S 103 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 103 (222)
++++|-.|++ |.....+++.+ ..+.+|+.++.+++.++...+.. + .++.++..|+.+.. + .
T Consensus 6 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 6 GKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G----ERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----CeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 4578888854 44444444433 23568999998876544433322 1 35778888887632 0 0
Q ss_pred CCceeEEEEcccc
Q 027517 104 DCFFDAITMGYGL 116 (222)
Q Consensus 104 ~~~~D~v~~~~~l 116 (222)
.+..|+++.+...
T Consensus 78 ~g~id~lv~~ag~ 90 (261)
T PRK08265 78 FGRVDILVNLACT 90 (261)
T ss_pred hCCCCEEEECCCC
Confidence 1357888876543
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.49 E-value=5.8 Score=32.49 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=55.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.+++|+=+|+|. |......++.+ +.+|+.+|.++.....+... ...+ .++.+. -...|+|+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~~----------G~~v--~~l~ea---l~~aDVVI~ 273 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAMD----------GFRV--MTMEEA---AELGDIFVT 273 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHhc----------CCEe--cCHHHH---HhCCCEEEE
Confidence 678999999997 55555556554 56899999988654333221 1111 122221 124799887
Q ss_pred cccccCcccHHHHHH-HHhcccCCCcEEEEEecCC
Q 027517 113 GYGLRNVVDKRKALE-ESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~-~~~~~l~~gG~l~i~~~~~ 146 (222)
.-. . ..++. ...+.+|+|++++......
T Consensus 274 aTG-----~-~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 274 ATG-----N-KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CCC-----C-HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 431 2 33444 6778899999887765443
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.40 E-value=2.5 Score=33.18 Aligned_cols=97 Identities=13% Similarity=0.000 Sum_probs=54.9
Q ss_pred CCeEEEecCCC-Ch-hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh----h------cCCCeeEEeCCCCCcCC
Q 027517 35 GDNVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK----A------CYKNIEWVEGDALDLPF 102 (222)
Q Consensus 35 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~----~------~~~~i~~~~~d~~~~~~ 102 (222)
-.+|-=||+|+ |. ++..++. .+.+|+.+|.+++.++.++.++...-. . ...++.+. .++.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~---aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~--- 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA---HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA--- 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---
Confidence 45788999996 33 3333442 477999999999988776554322100 0 00122211 12111
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
.-...|+|+-+ +.+...-...+++++-+.++|+..+
T Consensus 80 av~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 80 CVADADFIQES-APEREALKLELHERISRAAKPDAII 115 (321)
T ss_pred HhcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEE
Confidence 11235777763 2333334567889999999998744
|
|
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=85.36 E-value=4.7 Score=24.14 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=23.3
Q ss_pred CCCCeEEEecCCCCh-hHHHHHHHhCCCCcEEEEeCC
Q 027517 33 KTGDNVLDVCCGSGD-LSFLLSEQVGSQGKVIGLDFS 68 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~~~~~D~~ 68 (222)
..+++||-+||.+|. ++.+++..++.+...+++.+.
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 445799999999995 456777777777788888763
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.35 E-value=16 Score=28.76 Aligned_cols=103 Identities=19% Similarity=0.281 Sum_probs=64.7
Q ss_pred hhCCCCCCeEEEecCCC--ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-CC-C
Q 027517 29 WSGAKTGDNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PF-S 103 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~-~ 103 (222)
..+..++.+||=.|+.. |.++..+++.+ +..++++--+++-.+.+++.-+. .-+.+...|+.+ . .. .
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~~k~~~~~~lGAd------~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSSEKLELLKELGAD------HVINYREEDFVEQVRELTG 208 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHhcCCC------EEEcCCcccHHHHHHHHcC
Confidence 45667789999998544 67788888886 33666666677666665555321 112233333322 1 12 2
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
...+|+|+-.-. ...+.+....|+++|+++......
T Consensus 209 g~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 209 GKGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCCceEEEECCC-------HHHHHHHHHHhccCCEEEEEecCC
Confidence 246999997543 445666888899999998866544
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.20 E-value=6 Score=31.79 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=54.8
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhH-HHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQ-LSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDA 109 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~ 109 (222)
.++.+|+-.|+|. |..+..+++.. +.++++++.+++. .+.+++. + --.++. .+...+....+.+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~Vi~~~~~~~~~~~~a~~l----G-----a~~~i~~~~~~~v~~~~~~~D~ 245 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF--GLRVTVISRSSEKEREAIDRL----G-----ADSFLVTTDSQKMKEAVGTMDF 245 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc--CCeEEEEeCChHHhHHHHHhC----C-----CcEEEcCcCHHHHHHhhCCCcE
Confidence 4678899888875 66677778775 5578888877543 4444332 1 001111 110111000124788
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
|+-... ....+....+.++++|+++....
T Consensus 246 vid~~G------~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 246 IIDTVS------AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EEECCC------cHHHHHHHHHhhcCCCEEEEEcc
Confidence 875322 13356777888999999987654
|
|
| >PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=85.10 E-value=3.2 Score=28.76 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=34.4
Q ss_pred HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCC
Q 027517 123 RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGF 202 (222)
Q Consensus 123 ~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 202 (222)
..+++-+.+.|.|||.+++.-..... ....+. ... ......+...|.++||
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~~D~e------T~~~L~---------------------~G~--pp~~TrLG~~Ll~~GF 116 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYVEDRE------TRRQLQ---------------------RGV--PPAETRLGFSLLKAGF 116 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-TT-HH------HHHHHH---------------------TT----GGGSHHHHHHHTTT-
T ss_pred HHHHHHHHHHhhhcCeEEEEEecCHH------HHHHHH---------------------cCC--CcccchhHHHHHhCCc
Confidence 57888999999999999775332211 000000 000 1122356788999999
Q ss_pred eEEEEeeecCCe---eeeEeeeC
Q 027517 203 SRAKHYELSGGL---MGNLVATR 222 (222)
Q Consensus 203 ~~~~~~~~~~~~---~~~~~~~k 222 (222)
+..+-+.++.|. ...++|.|
T Consensus 117 twfKdWYfPEG~~EGg~KlQa~K 139 (170)
T PF06557_consen 117 TWFKDWYFPEGGMEGGPKLQAEK 139 (170)
T ss_dssp -EEEEEE--TTTSTT-EEEEEE-
T ss_pred EEEeeeeccCccccCCceeeeec
Confidence 999988887653 22455543
|
; PDB: 2ARH_C. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=85.01 E-value=11 Score=29.44 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHH
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQL 72 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~ 72 (222)
.++.+|+-+|+|. |......+... ...+++.++.+++..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~-g~~~V~v~~r~~~ra 215 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAK-GVAEITIANRTYERA 215 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCCHHHH
Confidence 4678999999976 44433333331 234799999887644
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.96 E-value=15 Score=29.31 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=55.8
Q ss_pred CCCCCeEEEecCC-CChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc------CCC
Q 027517 32 AKTGDNVLDVCCG-SGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------PFS 103 (222)
Q Consensus 32 ~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~~~ 103 (222)
..++.+||-.|+| .|..+..+++.. +.+ +++++.+++..+.+++.- -..++..+-.+. ..+
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~--G~~~vi~~~~s~~~~~~~~~~g---------~~~v~~~~~~~~~~~l~~~~~ 253 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAF--GASPIIAVDVRDEKLAKAKELG---------ATHTVNAAKEDAVAAIREITG 253 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHhC---------CceEecCCcccHHHHHHHHhC
Confidence 3567788877765 356666777764 456 888988887766664321 111222111111 112
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
...+|+|+..-. . ...+....+.|+++|+++...
T Consensus 254 ~~~~d~vld~vg-----~-~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 254 GRGVDVVVEALG-----K-PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCCEEEEeCC-----C-HHHHHHHHHHHhcCCEEEEEc
Confidence 345898885322 1 125677888999999987654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.92 E-value=8.1 Score=28.59 Aligned_cols=78 Identities=14% Similarity=0.105 Sum_probs=46.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----CC----
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS---- 103 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~---- 103 (222)
+++++|=.|+ +|.....+++.+. .+.+++.++.+++.++...+...... .++.+...|+.+.. +.
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG----GRAHAIAADLADPASVQRFFDAAAA 80 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3567887775 5555555554432 35688888887766555444332211 46888888987632 00
Q ss_pred -CCceeEEEEcccc
Q 027517 104 -DCFFDAITMGYGL 116 (222)
Q Consensus 104 -~~~~D~v~~~~~l 116 (222)
.++.|.++.+...
T Consensus 81 ~~~~id~vi~~ag~ 94 (250)
T PRK12939 81 ALGGLDGLVNNAGI 94 (250)
T ss_pred HcCCCCEEEECCCC
Confidence 1357988876553
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=84.83 E-value=5.8 Score=34.96 Aligned_cols=99 Identities=13% Similarity=0.042 Sum_probs=60.0
Q ss_pred CeEEEecCCCChhHH-HHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh--------------hhcCCCeeEEeCCCCCc
Q 027517 36 DNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--------------KACYKNIEWVEGDALDL 100 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--------------~~~~~~i~~~~~d~~~~ 100 (222)
.+|.=||+|+-.... .+... .+.+|+.+|.+++.++.+..+....- .....++.+. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS--KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 579999999843333 33322 47799999999999988766543211 0000223322 222221
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
...|+|+=. +.+.++-...+++++-+.++|+.+|.-.
T Consensus 391 ----~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasN 427 (715)
T PRK11730 391 ----ERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASN 427 (715)
T ss_pred ----cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 346777642 3444555678999999999999777543
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=84.82 E-value=17 Score=28.34 Aligned_cols=95 Identities=19% Similarity=0.265 Sum_probs=57.6
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCc
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 106 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (222)
...+..++.+||=.|+|. |..+..+++.. +.+++.++.+++..+.+++. .+.... +.... +.+.
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~--g~~v~~~~~~~~~~~~~~~~----------g~~~~~-~~~~~--~~~~ 225 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQ--GAEVFAFTRSGEHQELAREL----------GADWAG-DSDDL--PPEP 225 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEcCChHHHHHHHHh----------CCcEEe-ccCcc--CCCc
Confidence 344566777888887764 44555666663 56889998888766666432 111111 11111 2345
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|+++.+.. ....+....+.++++|+++...
T Consensus 226 vD~vi~~~~------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 226 LDAAIIFAP------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred ccEEEEcCC------cHHHHHHHHHHhhcCCEEEEEc
Confidence 788775321 1246788899999999998754
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=84.70 E-value=8.7 Score=28.34 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=45.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----------P 101 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----------~ 101 (222)
..+.||-.||..|.....+++.+. .+..|++.--+-+-....... .++.....|+.+. .
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~---------~gl~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ---------FGLKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh---------hCCeeEEeccCChHHHHHHHHHHhh
Confidence 356899999999999998888764 345777776544433332222 2455566666542 2
Q ss_pred CCCCceeEEEEcc
Q 027517 102 FSDCFFDAITMGY 114 (222)
Q Consensus 102 ~~~~~~D~v~~~~ 114 (222)
+++++.|+.+.+.
T Consensus 77 ~~~Gkld~L~NNA 89 (289)
T KOG1209|consen 77 NPDGKLDLLYNNA 89 (289)
T ss_pred CCCCceEEEEcCC
Confidence 4567888887443
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=84.63 E-value=1.5 Score=31.16 Aligned_cols=90 Identities=19% Similarity=0.100 Sum_probs=51.4
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
-.+++|.-+|+|. |......++.+ +.+|+++|.+...-...... .+ ...++.++ -...|+|+
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~~----------~~--~~~~l~el---l~~aDiv~ 96 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADEF----------GV--EYVSLDEL---LAQADIVS 96 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHHT----------TE--EESSHHHH---HHH-SEEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhcccc----------cc--eeeehhhh---cchhhhhh
Confidence 3578999999986 77777777765 56999999988765411111 12 22233332 13468888
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
....+..-.. .-+=++..+.||+|.+++
T Consensus 97 ~~~plt~~T~-~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 97 LHLPLTPETR-GLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp E-SSSSTTTT-TSBSHHHHHTSTTTEEEE
T ss_pred hhhccccccc-eeeeeeeeeccccceEEE
Confidence 8776532211 111234556678777654
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=84.50 E-value=8.1 Score=32.95 Aligned_cols=92 Identities=17% Similarity=0.149 Sum_probs=53.7
Q ss_pred CeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeEE
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 110 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v 110 (222)
.+++=+|||. ....+++.+. .+.+++.+|.+++..+.+++. ....+.+|..+.. ..-++.|.+
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~----------g~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER----------GIRAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC----------CCeEEEcCCCCHHHHHhcCccccCEE
Confidence 4677777765 4444444332 356899999999988887653 5788999988742 222467866
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+..-. .-.+...+...+ +...|+..++..
T Consensus 486 iv~~~--~~~~~~~iv~~~-~~~~~~~~iiar 514 (558)
T PRK10669 486 LLTIP--NGYEAGEIVASA-REKRPDIEIIAR 514 (558)
T ss_pred EEEcC--ChHHHHHHHHHH-HHHCCCCeEEEE
Confidence 65321 111111233333 444666666553
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=84.26 E-value=18 Score=28.31 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=59.5
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDC 105 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~ 105 (222)
....++.+||=.|+|. |..+..+++.. +.+++.++.+++.++.+++.-. -.++...-.++. ....
T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~g~---------~~~i~~~~~~~~~~~~~~~ 227 (333)
T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARKLGA---------HHYIDTSKEDVAEALQELG 227 (333)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcCC---------cEEecCCCccHHHHHHhcC
Confidence 3566788999998764 66667777775 5579999988877777754311 111111111110 0012
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+|+++.... ....+....+.++++|+++....
T Consensus 228 ~~d~vi~~~g------~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 228 GAKLILATAP------NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred CCCEEEECCC------chHHHHHHHHHcccCCEEEEEec
Confidence 4788875321 13467778889999999887644
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=84.23 E-value=6 Score=34.77 Aligned_cols=100 Identities=10% Similarity=-0.086 Sum_probs=59.6
Q ss_pred CeEEEecCCCChhHH-HHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh----h----------hcCCCeeEEeCCCCCc
Q 027517 36 DNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----K----------ACYKNIEWVEGDALDL 100 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~----~----------~~~~~i~~~~~d~~~~ 100 (222)
.+|.=||+|+-.... .+... ..+.+|+.+|.+++.++.+..+....- . ....++.+. .|...+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTAT-KAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYRGF 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChHHh
Confidence 478999999844433 22221 136799999999999888766543210 0 001233322 232221
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
...|+|+=. +.+.++-...+++++-+.++|+.+|.-.
T Consensus 383 ----~~adlViEa-v~E~l~~K~~v~~~l~~~~~~~~ilasn 419 (699)
T TIGR02440 383 ----KDVDIVIEA-VFEDLALKHQMVKDIEQECAAHTIFASN 419 (699)
T ss_pred ----ccCCEEEEe-ccccHHHHHHHHHHHHhhCCCCcEEEeC
Confidence 346777643 3444445678899999999998777543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=84.20 E-value=3.2 Score=34.13 Aligned_cols=70 Identities=16% Similarity=0.055 Sum_probs=46.8
Q ss_pred CCeEEEecCCCChhHHHHHHHhCC-CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~ 109 (222)
..+++=+|+| ..+..+++.+.. +..++.+|.+++.++..++.. ..+.++.+|..+.. ..-..+|.
T Consensus 231 ~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~--------~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL--------PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC--------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 5688888885 455555554432 568999999999887766543 35678888887632 22346788
Q ss_pred EEEcc
Q 027517 110 ITMGY 114 (222)
Q Consensus 110 v~~~~ 114 (222)
|++..
T Consensus 301 vi~~~ 305 (453)
T PRK09496 301 FIALT 305 (453)
T ss_pred EEECC
Confidence 87643
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=84.15 E-value=18 Score=28.32 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=52.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~ 111 (222)
|..+|.-+|+|. |....+.+...+...++..+|+.++..+-...-+..... ......+.. .|..++ ...|+|+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~-~~~~~~v~~~~dy~~~----~~adivv 76 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-FLKNPKIEADKDYSVT----ANSKVVI 76 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhc-cCCCCEEEECCCHHHh----CCCCEEE
Confidence 456899999986 555444444433344799999987543222111111110 001123332 454443 2368888
Q ss_pred EcccccCccc--H-----------HHHHHHHhcccCCCcEEEEE
Q 027517 112 MGYGLRNVVD--K-----------RKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 112 ~~~~l~~~~~--~-----------~~~l~~~~~~l~~gG~l~i~ 142 (222)
.......-+. + ..+.+.+.+. .|+|++++.
T Consensus 77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivv 119 (312)
T cd05293 77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVV 119 (312)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEc
Confidence 7554432221 1 2334444444 678887664
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.15 E-value=15 Score=27.23 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=55.7
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChh-HHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC----------
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKN-QLSMASSRQDLVSKACYKNIEWVEGDALDLPF---------- 102 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---------- 102 (222)
++++|-.|++ |.....+++.+ ..+.+|++++-+.. ..+.....+...+ .++.++..|+.+...
T Consensus 6 ~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 6 GKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG----GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678888853 44555554433 24567888765432 2332222221111 357788888876320
Q ss_pred CCCceeEEEEcccccCcc-------------cHHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVV-------------DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~-------------~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..+..|+++.+....... -...+++.+.+.++.+|.+++..
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 013578888665432110 13456677777776667766543
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=84.14 E-value=3 Score=28.10 Aligned_cols=78 Identities=13% Similarity=0.016 Sum_probs=42.6
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeE
Q 027517 32 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 109 (222)
Q Consensus 32 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (222)
.-.+.++|=+|+|. |......+... +. +++.+.-+.+-.+...+.+ +. .++.....+ ++......+|+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt~~ra~~l~~~~---~~---~~~~~~~~~--~~~~~~~~~Di 78 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAAL--GAKEITIVNRTPERAEALAEEF---GG---VNIEAIPLE--DLEEALQEADI 78 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESSHHHHHHHHHHH---TG---CSEEEEEGG--GHCHHHHTESE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHc---Cc---cccceeeHH--HHHHHHhhCCe
Confidence 34678999999875 33333333332 33 5999987765444433332 10 245554433 33211246999
Q ss_pred EEEcccccCc
Q 027517 110 ITMGYGLRNV 119 (222)
Q Consensus 110 v~~~~~l~~~ 119 (222)
|+..-+..+.
T Consensus 79 vI~aT~~~~~ 88 (135)
T PF01488_consen 79 VINATPSGMP 88 (135)
T ss_dssp EEE-SSTTST
T ss_pred EEEecCCCCc
Confidence 9987665544
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.11 E-value=17 Score=28.65 Aligned_cols=77 Identities=12% Similarity=-0.038 Sum_probs=46.5
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------CC
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------FS 103 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 103 (222)
+++||-.|++ |.....+++.+ ..+.+|+.++-+++.++...+.+...+ .++.++..|+.+.. ..
T Consensus 8 ~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g----~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 8 RQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG----GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4578888854 44444444333 245689999988877665554443222 46778888887632 00
Q ss_pred CCceeEEEEcccc
Q 027517 104 DCFFDAITMGYGL 116 (222)
Q Consensus 104 ~~~~D~v~~~~~l 116 (222)
-++.|+++.+...
T Consensus 83 ~g~iD~lInnAg~ 95 (334)
T PRK07109 83 LGPIDTWVNNAMV 95 (334)
T ss_pred CCCCCEEEECCCc
Confidence 1358998876654
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=84.01 E-value=7.5 Score=34.31 Aligned_cols=101 Identities=9% Similarity=0.010 Sum_probs=61.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh--------------cCCCeeEEeCCCCCc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--------------CYKNIEWVEGDALDL 100 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~--------------~~~~i~~~~~d~~~~ 100 (222)
-.+|-=||+|+-.......-. ..+.+|+.+|.+++.++.+.++....-.. ...++... .|...+
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAGF 390 (714)
T ss_pred cceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 347899999984443322222 24779999999999998877655321100 00122221 122111
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
...|+|+=. +.+.++-...+++++-+.++|+.+|.-.
T Consensus 391 ----~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasn 427 (714)
T TIGR02437 391 ----DNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASN 427 (714)
T ss_pred ----cCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 346777743 3455555688999999999999777543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=83.88 E-value=7.5 Score=34.26 Aligned_cols=100 Identities=12% Similarity=-0.036 Sum_probs=60.6
Q ss_pred CCeEEEecCCC-ChhHH-HHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh--------------hhcCCCeeEEeCCCC
Q 027517 35 GDNVLDVCCGS-GDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--------------KACYKNIEWVEGDAL 98 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--------------~~~~~~i~~~~~d~~ 98 (222)
-.+|.=||+|+ |.-.. .++.. .+.+|+.+|.+++.++.+..+....- .....++.+. .|..
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~ 385 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATK--AGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYR 385 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChH
Confidence 35799999998 33333 33323 36799999999999888766543210 0001233332 2221
Q ss_pred CcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 99 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.+ ...|+|+=. +.+.++-...+++++-+.++|+.+|.-.
T Consensus 386 ~~----~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasn 424 (708)
T PRK11154 386 GF----KHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASN 424 (708)
T ss_pred Hh----ccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 11 246777643 3445555678999999999999777543
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.64 E-value=13 Score=30.52 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=25.8
Q ss_pred CeEEEecCCCChhH--HHHHHHhCCCCcEEEEeCChhHHHHHh
Q 027517 36 DNVLDVCCGSGDLS--FLLSEQVGSQGKVIGLDFSKNQLSMAS 76 (222)
Q Consensus 36 ~~vLdiG~G~G~~~--~~l~~~~~~~~~~~~~D~~~~~~~~~~ 76 (222)
.+|.=+|.|..... ..+++ .+.+|+++|.+++.++..+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~---~G~~V~~~D~~~~~v~~l~ 43 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS---RQKQVIGVDINQHAVDTIN 43 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh---CCCEEEEEeCCHHHHHHHH
Confidence 46777888864333 33333 3568999999999887643
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.63 E-value=9.8 Score=28.53 Aligned_cols=76 Identities=12% Similarity=0.019 Sum_probs=43.9
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC----------CC
Q 027517 36 DNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF----------SD 104 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 104 (222)
.+||-.| |+|.....+++.+ ..+.+|+.++.++...+...+.+...+ .++.+...|+.+... .-
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 76 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG----GEALVVPTDVSDAEACERLIEAAVARF 76 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3577666 4455555544332 245689999988766554443332211 467788888876320 01
Q ss_pred CceeEEEEcccc
Q 027517 105 CFFDAITMGYGL 116 (222)
Q Consensus 105 ~~~D~v~~~~~l 116 (222)
+..|.|+.+...
T Consensus 77 ~~id~vi~~ag~ 88 (263)
T PRK06181 77 GGIDILVNNAGI 88 (263)
T ss_pred CCCCEEEECCCc
Confidence 357998876554
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.52 E-value=20 Score=28.27 Aligned_cols=101 Identities=20% Similarity=0.210 Sum_probs=60.0
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe---CCCCC-c-
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE---GDALD-L- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~d~~~-~- 100 (222)
......++.+||=.|+|. |..+..+++.. +. .+++++.+++..+.+++.-. . .++. .+..+ +
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~~ga--------~-~~i~~~~~~~~~~l~ 234 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEELGA--------T-IVLDPTEVDVVAEVR 234 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhCC--------C-EEECCCccCHHHHHH
Confidence 334556778888888653 55566677764 55 78899988887777654310 1 1111 11110 1
Q ss_pred C-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 101 P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 101 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
. ...+.+|+|+-+..- ...++...+.|+++|.++.....
T Consensus 235 ~~~~~~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 235 KLTGGGGVDVSFDCAGV------QATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred HHhCCCCCCEEEECCCC------HHHHHHHHHhccCCCEEEEEccC
Confidence 0 122348988864321 23567788899999998776543
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=83.43 E-value=18 Score=27.88 Aligned_cols=96 Identities=15% Similarity=0.002 Sum_probs=50.1
Q ss_pred eEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEccc
Q 027517 37 NVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 115 (222)
Q Consensus 37 ~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 115 (222)
+|.=+|+|. |......+.. .+.+|+.++.+++.++..++.-.... . ........-..+.. ..+.+|+|+..--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~g~~~~-~--~~~~~~~~~~~~~~-~~~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ--AGHDVTLVARRGAHLDALNENGLRLE-D--GEITVPVLAADDPA-ELGPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCeEEEEECChHHHHHHHHcCCccc-C--CceeecccCCCChh-HcCCCCEEEEecc
Confidence 578899886 3333322222 24689999987776665544311000 0 01110000011111 1156899887554
Q ss_pred ccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 116 LRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 116 l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
-. +...+++.+...+.++..++.
T Consensus 76 ~~---~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 76 AY---QLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred cc---cHHHHHHHHhhhcCCCCEEEE
Confidence 32 346678888888877766554
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.98 E-value=14 Score=32.42 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=59.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C-----
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~----- 102 (222)
++++||-.|++ |.....+++.+ ..+.+|+.+|.+++.++.....+... .++.++..|+.+.. +
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-----~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-----DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-----CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 35688888853 33433333332 23568999999887766554433211 26778888877632 1
Q ss_pred CCCceeEEEEcccccCccc-------------------HHHHHHHHhcccCC---CcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVVD-------------------KRKALEESFRVLKP---GSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~l~~---gG~l~i~~ 143 (222)
..+..|+|+.+........ ...+++.+.+.+++ +|.+++..
T Consensus 495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 1135899987765432210 23445566666655 57776654
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.85 E-value=15 Score=28.34 Aligned_cols=84 Identities=10% Similarity=-0.006 Sum_probs=40.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---CCCCCcee
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDCFFD 108 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D 108 (222)
.++++|=+|+| | .+..++..+ ..+. +++.++.+++..+.+++........ ...+.+...|..+. ...-..+|
T Consensus 125 ~~k~vlI~GAG-G-agrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~-~~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 125 KGKKLTVIGAG-G-AATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE-VPECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CCCEEEEECCc-H-HHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc-CCCceeEEechhhhhHHHhhhccCC
Confidence 45689999986 3 333333221 2344 4999988763223333222211110 02333444454432 11113579
Q ss_pred EEEEcccccCcc
Q 027517 109 AITMGYGLRNVV 120 (222)
Q Consensus 109 ~v~~~~~l~~~~ 120 (222)
+|+.+-++...+
T Consensus 202 ilINaTp~Gm~~ 213 (289)
T PRK12548 202 ILVNATLVGMKP 213 (289)
T ss_pred EEEEeCCCCCCC
Confidence 999877766443
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=82.76 E-value=14 Score=25.89 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=57.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CC---CCcee
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FS---DCFFD 108 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~---~~~~D 108 (222)
.+..+|+-|||=+- -..+.+...++.++..+|++...-... .+ .+..-|..... ++ .++||
T Consensus 24 ~~~~~iaclstPsl--~~~l~~~~~~~~~~~Lle~D~RF~~~~------------~~-~F~fyD~~~p~~~~~~l~~~~d 88 (162)
T PF10237_consen 24 LDDTRIACLSTPSL--YEALKKESKPRIQSFLLEYDRRFEQFG------------GD-EFVFYDYNEPEELPEELKGKFD 88 (162)
T ss_pred CCCCEEEEEeCcHH--HHHHHhhcCCCccEEEEeecchHHhcC------------Cc-ceEECCCCChhhhhhhcCCCce
Confidence 35679999998663 333443223566899999987543221 12 34455554421 11 46899
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+|++--.+-.-+-.....+.++.++++++.+++.
T Consensus 89 ~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 89 VVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 9999877732222345556666677888888765
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=82.67 E-value=3.5 Score=31.73 Aligned_cols=49 Identities=10% Similarity=0.227 Sum_probs=37.2
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
+....+.+|.-+|+|.......+.+. | .+|.++|+++..+...+-+++.
T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~--P-a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRA--P-ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHhhcC--C-ceeEEEeCCHHHHHHHHHHHHH
Confidence 34466789999999877666666654 3 5999999999988887766654
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=82.64 E-value=20 Score=28.10 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=55.7
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CCCCCcee
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFD 108 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D 108 (222)
...++.+|+=.|+|. |..+..+++.. +.+++.++.+++..+.+++.-. . .++...-.+. ....+.+|
T Consensus 166 ~~~~g~~vlV~g~g~vG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~-------~--~vi~~~~~~~~~~~~~~~d 234 (337)
T cd05283 166 GVGPGKRVGVVGIGGLGHLAVKFAKAL--GAEVTAFSRSPSKKEDALKLGA-------D--EFIATKDPEAMKKAAGSLD 234 (337)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHcCC-------c--EEecCcchhhhhhccCCce
Confidence 456677777777754 55566667664 5589999988877777653210 0 1111110010 11124588
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+++....- ...+....+.|+++|+++....
T Consensus 235 ~v~~~~g~------~~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 235 LIIDTVSA------SHDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred EEEECCCC------cchHHHHHHHhcCCCEEEEEec
Confidence 88853321 1235667788899999876543
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.37 E-value=13 Score=28.66 Aligned_cols=96 Identities=19% Similarity=0.016 Sum_probs=52.0
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh-------hhhc----------CCCeeEEeCCC
Q 027517 36 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-------SKAC----------YKNIEWVEGDA 97 (222)
Q Consensus 36 ~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-------~~~~----------~~~i~~~~~d~ 97 (222)
.+|.=+|+|. |.-....+.. .+.+|+.+|.+++.++.++++.... .... ..++... .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 4688899996 3333333322 3568999999999988765543210 0000 0111111 122
Q ss_pred CCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 98 LDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 98 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
.. -...|+|+..- .........+++++.+.++|+..+
T Consensus 81 ~~----~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il 117 (291)
T PRK06035 81 ES----LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETII 117 (291)
T ss_pred HH----hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEE
Confidence 11 13368887643 222222466788888888877654
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=82.27 E-value=22 Score=27.76 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=39.6
Q ss_pred eEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEccc
Q 027517 37 NVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 115 (222)
Q Consensus 37 ~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 115 (222)
+|.=+|||. |......+...+...++..+|.+++..+.....+..........+.+...+..++ ...|+|+....
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l----~~aDIVIitag 77 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDC----KDADIVVITAG 77 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHh----CCCCEEEEccC
Confidence 678899986 4444444433222248999999887654433332211100002233333333322 34799987665
Q ss_pred cc
Q 027517 116 LR 117 (222)
Q Consensus 116 l~ 117 (222)
..
T Consensus 78 ~~ 79 (306)
T cd05291 78 AP 79 (306)
T ss_pred CC
Confidence 43
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=82.14 E-value=4.7 Score=28.06 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=45.2
Q ss_pred eEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEccc
Q 027517 37 NVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 115 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 115 (222)
+|-=||.|. ....+++++ ..+.++++.|.+++..+...+. .+. ...+..+.. +..|+|++.-.
T Consensus 3 ~Ig~IGlG~--mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----------g~~-~~~s~~e~~---~~~dvvi~~v~ 66 (163)
T PF03446_consen 3 KIGFIGLGN--MGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----------GAE-VADSPAEAA---EQADVVILCVP 66 (163)
T ss_dssp EEEEE--SH--HHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----------TEE-EESSHHHHH---HHBSEEEE-SS
T ss_pred EEEEEchHH--HHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----------hhh-hhhhhhhHh---hcccceEeecc
Confidence 455567664 333333332 2367899999998777665543 222 222323321 23588887432
Q ss_pred ccCcccHHHHHHH--HhcccCCCcEEEE
Q 027517 116 LRNVVDKRKALEE--SFRVLKPGSRISV 141 (222)
Q Consensus 116 l~~~~~~~~~l~~--~~~~l~~gG~l~i 141 (222)
.-+....++.. +...|++|..++-
T Consensus 67 --~~~~v~~v~~~~~i~~~l~~g~iiid 92 (163)
T PF03446_consen 67 --DDDAVEAVLFGENILAGLRPGKIIID 92 (163)
T ss_dssp --SHHHHHHHHHCTTHGGGS-TTEEEEE
T ss_pred --cchhhhhhhhhhHHhhccccceEEEe
Confidence 12234556666 7777777766643
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=82.09 E-value=23 Score=27.85 Aligned_cols=100 Identities=22% Similarity=0.308 Sum_probs=56.0
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-C-CCCCc
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-P-FSDCF 106 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~ 106 (222)
...++.+||=.|+|. |..+..+++..+ ..++++++.++...+.+++.-. . .-+.....+... + . .+...
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~~g~----~--~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKKLGA----T--HTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHhCC----C--ceeccccccHHHHHHHHhCCCC
Confidence 456677877777653 455566777642 1478889888776665554210 0 001111111100 0 0 12245
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|+|+-.. .. ...+..+.+.|+++|+++...
T Consensus 236 ~d~vld~~-----g~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 236 VDVVIEAV-----GI-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CCEEEECC-----CC-HHHHHHHHHhccCCcEEEEec
Confidence 89888533 12 335677888999999987654
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >KOG2811 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.79 E-value=3.8 Score=32.56 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIG 64 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~ 64 (222)
++..++|+|||-|.++..++..++ ...++.
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~-~~~~~l 211 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQ-IQNVYL 211 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhc-cccEEE
Confidence 446899999999999999998874 345554
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=81.44 E-value=11 Score=30.35 Aligned_cols=111 Identities=23% Similarity=0.276 Sum_probs=66.0
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCCceeEEEE-
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITM- 112 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~- 112 (222)
+.++||.+|+.+.....+++.++ ..+--|+++..+.+.....+..... ..-....+..+|....+. ....++.+..
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~r-v~kpGG~~i~~e~i~~~~~~~~~~~-~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~ 258 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYR-VLKPGGLFIVKEWIKTAKLKKPNSE-HVDILLEIEGGDALPAETFNTDVFDLLKSF 258 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhc-ccCCCceEEeHHHHHhhhccCCCcc-cccccCceeccccccceeccccHHHHHhhc
Confidence 45899999999999999998873 3566778888888777766543210 000233444444332210 0011111110
Q ss_pred ------------------------cccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 113 ------------------------GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 113 ------------------------~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
.....|+++...++......++|+|.+++.+..+.
T Consensus 259 ~~~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~ 317 (364)
T KOG1269|consen 259 GFEHLKLEKDLALKSSFPWNTPLTRDTITHWQDKSALFRGRVATLKPGGKVLILEYIRG 317 (364)
T ss_pred cchhhhhcccccCCCccccccccchhheeecccccHHHHhHhhccCcCceEEehhhcCc
Confidence 22334455556677888888899988888766543
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.38 E-value=13 Score=28.54 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=55.1
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChh-HHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----CC----
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKN-QLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS---- 103 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~---- 103 (222)
++++|-.|++. .....+++.+ ..+.+++.++.++. ..+.........+ .++.++..|+.+.. +.
T Consensus 46 ~k~iLItGasg-gIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 46 GKVALITGGDS-GIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG----VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 46788888544 4444444333 23568888877642 2222222222111 36778888887632 00
Q ss_pred -CCceeEEEEcccccC----ccc----------------HHHHHHHHhcccCCCcEEEEEe
Q 027517 104 -DCFFDAITMGYGLRN----VVD----------------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 104 -~~~~D~v~~~~~l~~----~~~----------------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+..|+++.+..... +.+ ...+++.+.+.++++|.++++.
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 135788886554321 110 1234555666666777776654
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=81.15 E-value=0.3 Score=34.30 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=32.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcc
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (222)
++.+|+=+|.|. |.-+..++..+ +.+++.+|..+..++..+..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~ 62 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESL 62 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcc
Confidence 457999999997 66677888776 67999999998877766554
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.14 E-value=12 Score=27.74 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=42.2
Q ss_pred eEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeEEE
Q 027517 37 NVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAIT 111 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~ 111 (222)
+++=+|||. +...+++.+. .+..++.+|.+++..+.....- .....+++|..+.. ..-..+|+++
T Consensus 2 ~iiIiG~G~--vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~--------~~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 2 KIIIIGAGR--VGRSVARELSEEGHNVVLIDRDEERVEEFLADE--------LDTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred EEEEECCcH--HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh--------cceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 577788876 3333333332 2458999999998877733311 25678888887732 2235689888
Q ss_pred Ec
Q 027517 112 MG 113 (222)
Q Consensus 112 ~~ 113 (222)
+.
T Consensus 72 a~ 73 (225)
T COG0569 72 AA 73 (225)
T ss_pred Ee
Confidence 63
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=81.03 E-value=21 Score=28.03 Aligned_cols=105 Identities=13% Similarity=0.052 Sum_probs=55.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.+.+|.-+|+|. |....+.+...+-..++..+|++++.++....-+....... .++.+...|..++ ...|+|+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~~~~i~~~~~~~~----~~adivIi 79 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-SPTKIYAGDYSDC----KDADLVVI 79 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-CCeEEEeCCHHHh----CCCCEEEE
Confidence 456999999987 66665555443222379999997765433222121111100 2344444444333 34688887
Q ss_pred cccccCccc--H-------HHHHHHHhccc---CCCcEEEEEe
Q 027517 113 GYGLRNVVD--K-------RKALEESFRVL---KPGSRISVLD 143 (222)
Q Consensus 113 ~~~l~~~~~--~-------~~~l~~~~~~l---~~gG~l~i~~ 143 (222)
......-+. + ..+++++...+ .|+|++++..
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 666533321 1 23344433333 3688876643
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.82 E-value=27 Score=27.86 Aligned_cols=98 Identities=13% Similarity=0.221 Sum_probs=59.1
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC----c-CC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD----L-PF 102 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----~-~~ 102 (222)
....++.+||-.|+|. |..+..+++.. +. .++++|.+++..+.+++.- --.++..+-.+ + ..
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~--G~~~v~~~~~~~~k~~~~~~~g---------~~~~i~~~~~~~~~~v~~~ 250 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIA--GCTTIIAVDIVDSRLELAKELG---------ATHVINPKEEDLVAAIREI 250 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHcC---------CcEEecCCCcCHHHHHHHH
Confidence 3456778899888765 66677777775 44 5999999887776665431 11111111111 0 01
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
....+|+|+-+..- ...+....+.++++|+++....
T Consensus 251 ~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 251 TGGGVDYALDTTGV------PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred hCCCCcEEEECCCC------cHHHHHHHHHhccCCEEEEeCc
Confidence 12458888854321 2356778888999999887543
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=80.75 E-value=15 Score=24.94 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=52.9
Q ss_pred eEEEecC-CC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 37 NVLDVCC-GS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 37 ~vLdiG~-G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
+|.=+|+ |. |.....++...+-..++..+|..++..+--..-+.........+..+...+..++ ...|+|+...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~----~~aDivvita 77 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEAL----KDADIVVITA 77 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGG----TTESEEEETT
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccc----ccccEEEEec
Confidence 6777888 65 6666555555344457999999976433322222221111112334444444443 3479999877
Q ss_pred cccCccc--H-----------HHHHHHHhcccCCCcEEEEE
Q 027517 115 GLRNVVD--K-----------RKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 115 ~l~~~~~--~-----------~~~l~~~~~~l~~gG~l~i~ 142 (222)
....-+. . ....+.+.+. .|+|.+++.
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivv 117 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVV 117 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEe
Confidence 6543321 1 2333444444 378887665
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=80.70 E-value=14 Score=28.70 Aligned_cols=97 Identities=12% Similarity=0.076 Sum_probs=48.6
Q ss_pred ecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCc
Q 027517 41 VCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV 119 (222)
Q Consensus 41 iG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 119 (222)
||+|. |......+...+-..++..+|+.++..+-...-+.........++.+...|..++ ...|+|+.......-
T Consensus 2 IGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~----~daDivVitag~~rk 77 (299)
T TIGR01771 2 IGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDC----KDADLVVITAGAPQK 77 (299)
T ss_pred CCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHH----CCCCEEEECCCCCCC
Confidence 57776 6665555544333347999999775432222111111100112344443343333 236999887765433
Q ss_pred cc-------------HHHHHHHHhcccCCCcEEEEE
Q 027517 120 VD-------------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 120 ~~-------------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+. ...+...+.+ ..|+|++++.
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~-~~p~~~vivv 112 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVK-SGFDGIFLVA 112 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEe
Confidence 21 1234444444 3688887665
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.64 E-value=16 Score=28.14 Aligned_cols=96 Identities=19% Similarity=0.109 Sum_probs=52.7
Q ss_pred CeEEEecCCCChh--HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh----hhhc----------CCCeeEEeCCCCC
Q 027517 36 DNVLDVCCGSGDL--SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV----SKAC----------YKNIEWVEGDALD 99 (222)
Q Consensus 36 ~~vLdiG~G~G~~--~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~----~~~~----------~~~i~~~~~d~~~ 99 (222)
.+|.=||+|.-.. +..++. .+.+|+.+|.+++.++.+.++.... .... ..++.. ..|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL---AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH
Confidence 4788899986333 333332 3568999999999887765432211 0000 012222 223322
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
. ...|+|+..-. ....-...+++.+...++|+..++
T Consensus 81 ~----~~aD~Vieavp-e~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 L----ADCDLVIEAAT-EDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred h----cCCCEEEEcCc-CCHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 34688876431 111123566788888888887654
|
|
| >PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria | Back alignment and domain information |
|---|
Probab=80.55 E-value=14 Score=24.55 Aligned_cols=80 Identities=18% Similarity=0.117 Sum_probs=55.2
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhH
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 184 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (222)
+..|+|++.+--. -.+....|-...+.|..+|.+.+..+-....
T Consensus 44 dvvD~vllWwR~~-DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~----------------------------------- 87 (127)
T PF11253_consen 44 DVVDVVLLWWRDD-DGDLVDALVDARTNLADDGVIWVLTPKAGRP----------------------------------- 87 (127)
T ss_pred ccccEEEEEEECC-cchHHHHHHHHHhhhcCCCEEEEEccCCCCC-----------------------------------
Confidence 4578888744311 1256777888889999999999886654331
Q ss_pred hhcCCHHHHHHHHHHcCCeEEEEeeecCCe-eeeEeee
Q 027517 185 REFLTGKDLEKLALEIGFSRAKHYELSGGL-MGNLVAT 221 (222)
Q Consensus 185 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~-~~~~~~~ 221 (222)
...++.++.+....+|+...+........ ...++.+
T Consensus 88 -g~V~~~~I~eaA~taGL~~t~~~~v~~dWsg~rLv~r 124 (127)
T PF11253_consen 88 -GHVEPSDIREAAPTAGLVQTKSCAVGDDWSGTRLVRR 124 (127)
T ss_pred -CCCCHHHHHHHHhhcCCeeeeeeccCCCccEEEeecc
Confidence 23577899999999999988877766533 3344444
|
|
| >PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences | Back alignment and domain information |
|---|
Probab=80.47 E-value=2.1 Score=39.34 Aligned_cols=93 Identities=18% Similarity=0.148 Sum_probs=54.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~ 112 (222)
.+..+||+|.|.-.-.+.+. ++...|+.+|..|-.--..- .+ ..-.+++.|...... ....+|.+.|
T Consensus 822 ~~~~~lDLGTGPE~RiLsli---P~~~pvtmvD~RP~ae~m~~-------w~--t~T~y~~~DYl~~~~~~~~~~D~vta 889 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLI---PPDTPVTMVDTRPFAEPMNC-------WN--TQTQYIQADYLSDAWWNGTPFDAVTA 889 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS----TTSEEEEEESS--SSSCCC-------CS--TTEEEEES-TTSCCGGCC---SEEEE
T ss_pred CcceEEEccCCccceeeecc---CCCCceEEEecCCcccccch-------hh--hcceeeeeccccceeEecCCCCEEEE
Confidence 46799999999876655555 56779999998774321111 11 356889999877543 3457999999
Q ss_pred cccccCc-----ccHHHHHHHHhcccCCCcE
Q 027517 113 GYGLRNV-----VDKRKALEESFRVLKPGSR 138 (222)
Q Consensus 113 ~~~l~~~-----~~~~~~l~~~~~~l~~gG~ 138 (222)
.++|..- -+....++.+.+.+++.|.
T Consensus 890 ilSLGAAaA~a~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 890 ILSLGAAAASANVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp CTCHHHHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred EeeehhhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence 8887643 2456778888887777663
|
The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 222 | ||||
| 3bus_A | 273 | Crystal Structure Of Rebm Length = 273 | 7e-13 | ||
| 3dh0_A | 219 | Crystal Structure Of A Sam Dependent Methyltransfer | 1e-10 | ||
| 1xxl_A | 239 | The Crystal Structure Of Ycgj Protein From Bacillus | 2e-09 | ||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 5e-08 | ||
| 3sm3_A | 235 | Crystal Structure Of Sam-Dependent Methyltransferas | 3e-07 | ||
| 1vl5_A | 260 | Crystal Structure Of A Putative Methyltransferase ( | 5e-07 | ||
| 1ve3_A | 227 | Crystal Structure Of Ph0226 Protein From Pyrococcus | 5e-06 | ||
| 3bkx_A | 275 | Crystal Structure Of Cyclopropane-fatty-acyl-phosph | 8e-06 | ||
| 4fr0_A | 383 | Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransf | 8e-05 | ||
| 3mb5_A | 255 | Crystal Structure Of P. Abyssi Trna M1a58 Methyltra | 1e-04 | ||
| 3lhd_C | 253 | Crystal Structure Of P. Abyssi Trna M1a58 Methyltra | 1e-04 | ||
| 2b25_A | 336 | Human Putative Trna(1-Methyladenosine)methyltransfe | 3e-04 | ||
| 3eey_A | 197 | Crystal Structure Of Putative Rrna-Methylase From C | 5e-04 | ||
| 2avn_A | 260 | Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYN | 9e-04 |
| >pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273 | Back alignment and structure |
|
| >pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase From Aquifex Aeolicus Length = 219 | Back alignment and structure |
|
| >pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus Subitilis At 2.1 A Resolution Length = 239 | Back alignment and structure |
|
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
| >pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases Q8puk2_metma From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Mar262 Length = 235 | Back alignment and structure |
|
| >pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331) From Bacillus Halodurans C-125 At 1.95 A Resolution Length = 260 | Back alignment and structure |
|
| >pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227 | Back alignment and structure |
|
| >pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid Synthase- Like Protein (yp_807781.1) From Lactobacillus Casei Atcc 334 At 1.85 A Resolution Length = 275 | Back alignment and structure |
|
| >pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase With Sam Length = 383 | Back alignment and structure |
|
| >pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58 Methyltransferase In Complex With S-Adenosyl-L-Methionine Length = 255 | Back alignment and structure |
|
| >pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58 Methyltransferase In Complex With S-Adenosyl-L-Homocysteine Length = 253 | Back alignment and structure |
|
| >pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase Length = 336 | Back alignment and structure |
|
| >pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum Length = 197 | Back alignment and structure |
|
| >pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS Methyltransferase-Related Protein (Tm1389) From Thermotoga Maritima Msb8 At 2.35 A Resolution Length = 260 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 1e-59
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
Query: 11 NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 70
+ L F ++ K + K G VLDV G+G LS+ VG +GKV +D +
Sbjct: 19 SRLELFDPEKVLKEFGL-----KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEE 73
Query: 71 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESF 130
++ A + V+K KN+E ++ + +P D D I M + + + K LEE
Sbjct: 74 MVNYAWEK---VNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELK 130
Query: 131 RVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL-----AEEYQYLKSSIR 185
RV KP + ++++D+ K + +E + V + G+ E +Y
Sbjct: 131 RVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYA 190
Query: 186 EFLTGKDLEKLALEIGF 202
+ ++ L + + F
Sbjct: 191 MIVKQEEENPL-MNVPF 206
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 3e-54
Identities = 40/206 (19%), Positives = 75/206 (36%), Gaps = 17/206 (8%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
+++ L + I ++ G G +D+ G G LS L++Q + LDFS
Sbjct: 19 EISKTLFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSD--FSIRALDFS 75
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
K+ +A +++ I+ V+GD ++P D + D I + D A E
Sbjct: 76 KHMNEIA--LKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFRE 133
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
+R+LK G + + + +I MI +++
Sbjct: 134 IYRILKSGGKTYIGGGF-GNKELRDSISAEMIR-----------KNPDWKEFNRKNISQE 181
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGL 214
+ + + EIG S + G
Sbjct: 182 NVERFQNVLDEIGISSYEIILGDEGF 207
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 3e-52
Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 12/180 (6%)
Query: 14 LSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLS 73
++ H + + + + VLD+ G+G + S V + IG+D +K +
Sbjct: 1 MAHHHHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVE 57
Query: 74 MASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVL 133
+ASS + +N+ + +G A LPF D FD IT Y + D RKA+ E RVL
Sbjct: 58 VASSFAQ---EKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVL 114
Query: 134 KPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY------GLAEEYQYLKSSIREF 187
K R ++D P + + Q I+++
Sbjct: 115 KQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKW 174
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 2e-50
Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 27/204 (13%)
Query: 14 LSFGQHRIWKRMA--VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ 71
++ H +A + + K + VLDV G G ++ + V KV+ D +++
Sbjct: 15 VTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDI 71
Query: 72 LSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFR 131
L +A + + ++ +E+V+GDA +PF+D F +T + + + E++R
Sbjct: 72 LKVARAF---IEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYR 128
Query: 132 VLKPGSRISVLDFNKSTQP-FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190
VLK G ++ ++D + F + S
Sbjct: 129 VLKKGGQLLLVDNSAPENDAFDVFYNYVEKE------------------RDYSHHRAWKK 170
Query: 191 KDLEKLALEIGFSRAKHYELSGGL 214
D K+ E GF + +
Sbjct: 171 SDWLKMLEEAGFELEELHCFHKTF 194
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 2e-49
Identities = 40/202 (19%), Positives = 78/202 (38%), Gaps = 11/202 (5%)
Query: 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78
+ ++ + D +LD+ CGSG +S L+ + V G+D + + +A +
Sbjct: 17 SLDLYPIIHNY--LQEDDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETA 71
Query: 79 --QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD---KRKALEESFRVL 133
+++ E+ +A L F D FD M L +V D + + ++E FRVL
Sbjct: 72 ARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVL 131
Query: 134 KPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 193
KPG+ + +++F ++ ++ D + + + I T K+L
Sbjct: 132 KPGAYLYLVEFGQNWHLKLYRK-RYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKEL 190
Query: 194 EKLALEIGFSRAKHYELSGGLM 215
L + F
Sbjct: 191 VFLLTDCRFEIDYFRVKELETR 212
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 8e-45
Identities = 40/194 (20%), Positives = 77/194 (39%), Gaps = 15/194 (7%)
Query: 11 NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 70
L Q +++ + G VL+ CG G + +L++ ++ +D S
Sbjct: 14 EALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAK-NNPDAEITSIDISPE 72
Query: 71 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESF 130
L A K KN+++++ + LPF D FD I + + L ++ +AL+
Sbjct: 73 SLEKAREN---TEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLK 129
Query: 131 RVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190
+VLKPG I+V++ + + F ++ + + L G
Sbjct: 130 KVLKPGGTITVIEGDHGSCYFHPEGKKAI-----------EAWNCLIRVQAYMKGNSLVG 178
Query: 191 KDLEKLALEIGFSR 204
+ + L E GF +
Sbjct: 179 RQIYPLLQESGFEK 192
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 147 bits (371), Expect = 9e-44
Identities = 37/215 (17%), Positives = 75/215 (34%), Gaps = 30/215 (13%)
Query: 9 QLNDLLSFGQHRIWKRM----------AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS 58
+ DL++ G + + K G+ +L++ CG GDLS +L++QVGS
Sbjct: 8 YITDLMALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGS 67
Query: 59 QGKVIGLDFSKNQ----LSMASSRQDLVSKACYKNIEWVEGDALD---LPFSDCFFDAIT 111
G V G+D + L++ + L++ + L P +D FD +
Sbjct: 68 SGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVV 127
Query: 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 171
+ + L + + V +++ + + +
Sbjct: 128 LAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQ----------IGHLQAAM 177
Query: 172 GLAEEYQYLKSS---IREFLTGKDLEKLALEIGFS 203
Y S IR +T L ++A + ++
Sbjct: 178 IQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWT 212
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 1e-43
Identities = 33/205 (16%), Positives = 63/205 (30%), Gaps = 24/205 (11%)
Query: 11 NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 70
+ A+ G+++L+V G+G L + +G++ S+
Sbjct: 14 YGTPLGAYVIAEEERALKG-LLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEA 67
Query: 71 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESF 130
L++ R WV LPF FD + + L V D + L E+
Sbjct: 68 MLAVGRRR--------APEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEAR 119
Query: 131 RVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAE----------EYQYL 180
RVL+PG + V + + + A + E + +
Sbjct: 120 RVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLGPPEAEGEAV 179
Query: 181 KSSIREFLTGKDLEKLALEIGFSRA 205
+ ++ + G A
Sbjct: 180 FLAPEAHPPYEEADLAGRRAGNRPA 204
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 4e-42
Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 12/201 (5%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
+ + S ++LD+ G+G LS L E+ + +D S
Sbjct: 19 EQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMS 77
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV--VDKRKAL 126
+ L +A +R ++++E D F + +D + + ++ DK++
Sbjct: 78 EKMLEIAKNR-----FRGNLKVKYIEADYSKYDFEEK-YDMVVSALSIHHLEDEDKKELY 131
Query: 127 EESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAE-EYQYLKSSIR 185
+ S+ +LK D F + + + V SG E Y +S +
Sbjct: 132 KRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYV--ENSGLTEEEIAAGYERSKLD 189
Query: 186 EFLTGKDLEKLALEIGFSRAK 206
+ + E GF
Sbjct: 190 KDIEMNQQLNWLKEAGFRDVS 210
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-41
Identities = 40/188 (21%), Positives = 66/188 (35%), Gaps = 24/188 (12%)
Query: 9 QLNDLLSFGQ-HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF 67
+ + + HR+ + K VLD+ G+G S L E+ +V+ +D
Sbjct: 30 SMYETPKWKLYHRLIGSFLEEY--LKNPCRVLDLGGGTGKWSLFLQERGF---EVVLVDP 84
Query: 68 SKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA-ITMGYGLRNVVDKRKAL 126
SK L +A + VE A DLPF F+A + +G L V +K KA
Sbjct: 85 SKEMLEVAREK---------GVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAF 135
Query: 127 EESFRVLKPGSRISVLDFNKSTQPFTTAIQEW-------MIDNVVVPVASGYGLAEEYQY 179
E RVL P + + + I++ + V + Y +
Sbjct: 136 SEIRRVLVPDGLL-IATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAF 194
Query: 180 LKSSIREF 187
+
Sbjct: 195 KPEDLDSL 202
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 1e-39
Identities = 45/225 (20%), Positives = 76/225 (33%), Gaps = 44/225 (19%)
Query: 9 QLNDLLSFGQHRIWKRMAVSW------SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKV 62
+ + +W + S K VLDV CG G ++ LS K
Sbjct: 22 SSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGY---KA 78
Query: 63 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK 122
+G+D S+ + R ++ +++GD LPF + F+AI L +
Sbjct: 79 VGVDISEVMIQKGKER------GEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEP 132
Query: 123 RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182
+AL E RVLK + + +P + Y K
Sbjct: 133 LRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRL--------------------YGKD 172
Query: 183 SIREFLTGKDLEKLALEIGFS---------RAKHYELSGGLMGNL 218
+ + + E+L E GF R + ++ G L +L
Sbjct: 173 VVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVNEKMLGQLSTDL 217
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-38
Identities = 45/206 (21%), Positives = 74/206 (35%), Gaps = 31/206 (15%)
Query: 10 LNDLLSFGQHRIWKR-MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
L D+ + + + G+ G VLD+ CG+G +L S+ VG GKVIG+D
Sbjct: 58 LADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDML 117
Query: 69 KNQLSMASSRQD-----LVSKACYKNIEWVEGDALDL------PFSDCFFDAITMGYGLR 117
NQL +A + N+ +++G +L D D +
Sbjct: 118 DNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCN 177
Query: 118 NVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEY 177
+K +E RVL+ G + D + + + A Q+ Y
Sbjct: 178 LSTNKLALFKEIHRVLRDGGELYFSDVY-ADRRLSEAAQQD---------------PILY 221
Query: 178 QYLKSSIREFLTGKDLEKLALEIGFS 203
+ L +D +L E GF
Sbjct: 222 G---ECLGGALYLEDFRRLVAEAGFR 244
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-38
Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 19/194 (9%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
+L +I MA + L++ G+G ++ L + I LD
Sbjct: 14 RLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYR---YIALDAD 70
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
L + + + ++ V+ DA +P D + + + V D K L E
Sbjct: 71 AAMLEVFRQKI----AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAE 126
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
+ RVLKPG + P T + W A E +
Sbjct: 127 AIRVLKPGGALLEGWDQAEASPEWTLQERW------------RAFAAEEGFPVERGLHAK 174
Query: 189 TGKDLEKLALEIGF 202
K++E+ +G
Sbjct: 175 RLKEVEEALRRLGL 188
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 128 bits (322), Expect = 2e-36
Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 16/193 (8%)
Query: 11 NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 70
+D +SF + +WK +++D CG G L +L + K G+D +
Sbjct: 7 DDYVSFLVNTVWK--------ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGET 58
Query: 71 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESF 130
L+ A + + E++EGDA ++ +D +D L ++ L++
Sbjct: 59 LLAEAREL----FRLLPYDSEFLEGDATEIELNDK-YDIAICHAFLLHMTTPETMLQKMI 113
Query: 131 RVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190
+K G +I + + + + + + + Q ++ G
Sbjct: 114 HSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG---KDGNIG 170
Query: 191 KDLEKLALEIGFS 203
+ E+G
Sbjct: 171 MKIPIYLSELGVK 183
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-34
Identities = 32/198 (16%), Positives = 66/198 (33%), Gaps = 35/198 (17%)
Query: 12 DLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ 71
+ + + +++ G+G + L IG++ S+
Sbjct: 25 ERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPL-------KIKIGVEPSERM 77
Query: 72 LSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFR 131
+A R + ++G A +LP D FD M + V D +AL+E++R
Sbjct: 78 AEIARKR----------GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYR 127
Query: 132 VLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 191
+LK G + V ++ + + + + F + +
Sbjct: 128 ILKKGGYLIVGIVDRESFLGREYEKNKE------------------KSVFYKNARFFSTE 169
Query: 192 DLEKLALEIGFSRAKHYE 209
+L L + GF K +
Sbjct: 170 ELMDLMRKAGFEEFKVVQ 187
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-34
Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 19/170 (11%)
Query: 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 85
+ ++D CG+G L E K+ +D + L
Sbjct: 9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVK--------- 56
Query: 86 CYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145
+ + V + D D I ++ DK+ + E R+LK R+ ++D+
Sbjct: 57 --EKFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWR 114
Query: 146 KSTQPFTTAIQEWMIDNVVVPVASGYGLAEE-----YQYLKSSIREFLTG 190
K + M + + S + + + Y + R+ G
Sbjct: 115 KENTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTPYHFGLVLKRKTSEG 164
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 4e-32
Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 15/190 (7%)
Query: 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81
++ G + D+ G+G S L+ Q V ++ S A
Sbjct: 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHP-- 76
Query: 82 VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141
+EW G A +L D D + + + K+ +E R+++ G+ + +
Sbjct: 77 -------QVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLL 129
Query: 142 LDFNKSTQ-PFTTAIQEWMIDNVV--VPVASGYGLAEEYQYLKSSIREFLTGKDLEKLAL 198
+ Q + ++ ++ + +P+ L +E + FL DL L
Sbjct: 130 TFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIPFLLPHDLSDLFA 189
Query: 199 EIGFSRAKHY 208
+ R + Y
Sbjct: 190 AAAWRRPELY 199
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 1e-29
Identities = 34/207 (16%), Positives = 62/207 (29%), Gaps = 11/207 (5%)
Query: 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78
H ++R + G V V CG L +++G+D+ L A
Sbjct: 105 HGHFRRALQR--HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGA--T 160
Query: 79 QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALE---ESFRVLKP 135
+ A I DA L + +D +T D + E ++ LKP
Sbjct: 161 RLAAGHALAGQITLHRQDAWKLDTREG-YDLLTSNGLNIYEPDDARVTELYRRFWQALKP 219
Query: 136 GSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEK 195
G + P + W + + P + ++ T
Sbjct: 220 GGALVTSFLTPP--PALSPDSPWDMQA-IDPHDLQLQQLVFTRLIQPRWNALRTHAQTRA 276
Query: 196 LALEIGFSRAKHYELSGGLMGNLVATR 222
E GF+ + + L ++A +
Sbjct: 277 QLEEAGFTDLRFEDDRARLFPTVIARK 303
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 1e-29
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
+N + + + + + K VLD+ CG G SFLL + +V+G+D S
Sbjct: 15 DINSQEYRSRIETLEPLLMKY--MKKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDIS 69
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV--VDKRKAL 126
++ + A +K+ N+E++ GDA L F D FD + + + ++ +
Sbjct: 70 EDMIRKAREY----AKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVF 125
Query: 127 EESFRVLKPGSRISVLDFN 145
+E RVLKP + + +
Sbjct: 126 KEVRRVLKPSGKFIMYFTD 144
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 8e-29
Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 26/195 (13%)
Query: 17 GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS 76
G + + + D+ CG+G + +L+ V G+V GLDF + +
Sbjct: 29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIF- 85
Query: 77 SRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG 136
++ + + G DLPF + D I + N + + L E + LK G
Sbjct: 86 -NRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYN-IGFERGLNEWRKYLKKG 143
Query: 137 SRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKL 196
++V + + T I ++ +D E T +
Sbjct: 144 GYLAVSECSWFTDERPAEINDFWMDA---------------------YPEIDTIPNQVAK 182
Query: 197 ALEIGFSRAKHYELS 211
+ G+ + L
Sbjct: 183 IHKAGYLPVATFILP 197
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-28
Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 25/186 (13%)
Query: 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQ 79
++ + + K+ NVL+ G+G+L+ L V G++ S+ +A +
Sbjct: 32 AHYEDI-LEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKL 87
Query: 80 DLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGS 137
K EGD L D I Y ++ D K A+ + ++L G
Sbjct: 88 P-------KEFSITEGDFLSFEVPTS-IDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGG 139
Query: 138 RISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLA 197
+I D + Q E + L EY + ++ +
Sbjct: 140 KIVFADTIFADQDAYDKTVEAAKQRGFHQL--ANDLQTEY---------YTRIPVMQTIF 188
Query: 198 LEIGFS 203
GF
Sbjct: 189 ENNGFH 194
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-26
Identities = 32/195 (16%), Positives = 69/195 (35%), Gaps = 26/195 (13%)
Query: 17 GQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS 76
G ++ + + D+ CG+G + L++ V G++ G+D + + +
Sbjct: 29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIF- 85
Query: 77 SRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG 136
++ V C ++ + G +LPF + D I + N + + + E + LK G
Sbjct: 86 -NENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYN-IGFERGMNEWSKYLKKG 143
Query: 137 SRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKL 196
I+V + + T I+++ +D E
Sbjct: 144 GFIAVSEASWFTSERPAEIEDFWMDA---------------------YPEISVIPTCIDK 182
Query: 197 ALEIGFSRAKHYELS 211
G++ H+ L
Sbjct: 183 MERAGYTPTAHFILP 197
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 99 bits (249), Expect = 2e-26
Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 13/181 (7%)
Query: 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81
R + + VLD G + + G K G++ S QL A +
Sbjct: 11 LYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENF--- 65
Query: 82 VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRI 139
S+ + +GD LPF D + + ++ D ++A++E RVLKPG
Sbjct: 66 -SRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLA 124
Query: 140 SVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALE 199
+ + + E + + + + G + Y ++ KD++ L E
Sbjct: 125 CINFLTTKDERYNKG--EKIGEGEFLQLERGEKVIHSY-VSLEEADKYF--KDMKVLFKE 179
Query: 200 I 200
Sbjct: 180 D 180
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 96.9 bits (241), Expect = 3e-25
Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 19/149 (12%)
Query: 6 LKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGL 65
+ L + + L H K K GD V+D CG+G+ + L+ VG G+V G
Sbjct: 1 MSLTIKNSLGQ-SHDYIKMFV------KEGDTVVDATCGNGNDTAFLASLVGENGRVFGF 53
Query: 66 DFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSDCFFDAITMGYGLRNVVDKR- 123
D ++ + + L + ++ + + DC A+ G D
Sbjct: 54 DIQDKAIANTTKK--LTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSI 111
Query: 124 --------KALEESFRVLKPGSRISVLDF 144
+AL ++ +L G I+V+ +
Sbjct: 112 STRPETTIQALSKAMELLVTGGIITVVIY 140
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 1e-24
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 24/186 (12%)
Query: 18 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 77
R+ M + ++GD VLDV CG G + L+ +V G+ S+ Q++ A
Sbjct: 46 TDRLTDEMI-ALLDVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQA-- 100
Query: 78 RQDLVSKACYKN-IEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG 136
+ A N + + DA+DLPF D FDA+ L ++ D+ +AL E RVL+PG
Sbjct: 101 -NARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPG 159
Query: 137 SRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKL 196
+++ DF ++ +D +G G+ + E
Sbjct: 160 GTVAIADFVLLAPV--EGAKKEAVD----AFRAGGGVL-----------SLGGIDEYESD 202
Query: 197 ALEIGF 202
+
Sbjct: 203 VRQAEL 208
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 2e-24
Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 25/186 (13%)
Query: 12 DLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ 71
+L + G + + + G +LD CG G + LS+Q G V+G D
Sbjct: 25 NLAAAGNDIYGEARLIDAMAPR-GAKILDAGCGQGRIGGYLSKQ-GHD--VLGTDLDPIL 80
Query: 72 LSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV---DKRKALEE 128
+ A + WV GD S+ FD I + + + AL
Sbjct: 81 IDYAKQD--------FPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALAN 132
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
R L R V+ F + W+ + + VA GL E + ++ F+
Sbjct: 133 IHRALGADGRA-VIGFGAG--------RGWVFGD-FLEVAERVGLELENAFESWDLKPFV 182
Query: 189 TGKDLE 194
G +
Sbjct: 183 QGSEFL 188
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 1e-23
Identities = 32/187 (17%), Positives = 60/187 (32%), Gaps = 21/187 (11%)
Query: 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78
+VL++ G+G + LS V LD S ++ A
Sbjct: 31 DSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADR---VTALDGSAEMIAEAGRH 87
Query: 79 QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKR--KALEESFRVLKPG 136
N+E+ + D D +DA+ + L +V D R E + PG
Sbjct: 88 -------GLDNVEFRQQDLFDWTPDRQ-WDAVFFAHWLAHVPDDRFEAFWESVRSAVAPG 139
Query: 137 SRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKL 196
+ +D +++ V V ++ +K F + +L +
Sbjct: 140 GVVEFVDVT----DHERRLEQQDDSEPEVAVRRTLQDGRSFRIVK----VFRSPAELTER 191
Query: 197 ALEIGFS 203
+G+S
Sbjct: 192 LTALGWS 198
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 2e-23
Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 14/133 (10%)
Query: 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 90
VLD+ CG G +E + V+G+D S+ L+ A + +
Sbjct: 41 PDFNQKTVLDLGCGFGWHCIYAAEHGAKK--VLGIDLSERMLTEAKRKTT------SPVV 92
Query: 91 EWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 150
+ + D+ ++ + L + ++ + LK + P
Sbjct: 93 CYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH----P 148
Query: 151 FTTAI--QEWMID 161
TA Q+W D
Sbjct: 149 VFTADGRQDWYTD 161
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 2e-23
Identities = 30/133 (22%), Positives = 41/133 (30%), Gaps = 14/133 (10%)
Query: 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 90
G ++D+ CG G E S V+GLD S+ L+ A + I
Sbjct: 40 PEVGGLRIVDLGCGFGWFCRWAHEHGASY--VLGLDLSEKMLARARAAGPD------TGI 91
Query: 91 EWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 150
+ D L FD L V D + + L PG + P
Sbjct: 92 TYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH----P 147
Query: 151 FTTA--IQEWMID 161
A W ID
Sbjct: 148 IYMAPARPGWAID 160
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 3e-23
Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 7/143 (4%)
Query: 18 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 77
+ +A + LD+ G G + L + G + L+ + Q
Sbjct: 67 DEWLASELA-MTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRN-- 121
Query: 78 RQDLVSKACYKN-IEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG 136
++ ++A + I G L++P D +D I + DK K +E RVLKP
Sbjct: 122 -EEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR 180
Query: 137 SRISVLDFNKSTQPFTTAIQEWM 159
+++ D K ++IQ +
Sbjct: 181 GVMAITDPMKEDGIDKSSIQPIL 203
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 3e-23
Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 14/143 (9%)
Query: 18 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 77
+ + + + + G+ +LD+ CG+G L+ +++ V+G D + + A
Sbjct: 42 VWQYGEDL-LQLLNPQPGEFILDLGCGTGQLTEKIAQSGAE---VLGTDNAATMIEKARQ 97
Query: 78 RQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGS 137
Y ++ + DA + DA+ L V + A+ + LK G
Sbjct: 98 N--------YPHLHFDVADARNFRVDKPL-DAVFSNAMLHWVKEPEAAIASIHQALKSGG 148
Query: 138 RISVLDF-NKSTQPFTTAIQEWM 159
R + + A+ +
Sbjct: 149 RFVAEFGGKGNIKYILEALYNAL 171
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 3e-22
Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 12/161 (7%)
Query: 12 DLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQ 71
+ +S G K++ S VLD+ G G ++E+ G+ G+D N
Sbjct: 34 NYISSGGLEATKKIL-SDIELNENSKVLDIGSGLGGGCMYINEKYGAH--THGIDICSNI 90
Query: 72 LSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT---MGYGLRNVVDKRKALEE 128
++MA+ R +K I + D L F + FD I L ++ +K K ++
Sbjct: 91 VNMANERVSGNNK-----IIFEANDILTKEFPENNFDLIYSRDAILAL-SLENKNKLFQK 144
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS 169
++ LKP + + D+ + + + + + +
Sbjct: 145 CYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLIT 185
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 5e-21
Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 8/135 (5%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
++DV CG G + +++++ ++IG D S + A ++ YKN+ +
Sbjct: 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-YKNVSF 93
Query: 93 VEGDALDLPFS------DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146
+ D F D IT + D K ++ L+ I++ +
Sbjct: 94 KISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFEKFQRSAYANLRKDGTIAIWGYAD 152
Query: 147 STQPFTTAIQEWMID 161
P + MI+
Sbjct: 153 PIFPDYPEFDDLMIE 167
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 2e-20
Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 14/132 (10%)
Query: 15 SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM 74
+ R+ + +LDV G+G + L+ G Q + GL+ + + +
Sbjct: 22 TVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASL-GHQ--IEGLEPATRLVEL 78
Query: 75 ASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV--VDKRKALEESFRV 132
A + ++ + G DL S + + Y L ++ + AL
Sbjct: 79 ARQT--------HPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMA 130
Query: 133 LKPGSRISVLDF 144
++ G + ++ F
Sbjct: 131 VEDGGGL-LMSF 141
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 5e-18
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKA 85
+ VLD+ CG+G + L+E +G +V+GLD + L +A + +K
Sbjct: 34 FKEDAKREVRRVLDLACGTGIPTLELAE----RGYEVVGLDLHEEMLRVARRK----AKE 85
Query: 86 CYKNIEWVEGDALDLPFSDCFFDAITMGY---GLRNVVDKRKALEESFRVLKPGSRISVL 142
IE+++GD L++ F + FDA+TM + + D RK + LKPG +
Sbjct: 86 RNLKIEFLQGDVLEIAFKNE-FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVF-IT 143
Query: 143 DFN 145
DF
Sbjct: 144 DFP 146
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 6e-18
Identities = 33/147 (22%), Positives = 49/147 (33%), Gaps = 18/147 (12%)
Query: 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIE 91
VLD+ CG G + ++ + GLD SK + A+ R Y +
Sbjct: 83 DDKATAVLDIGCGEGYYTHAFADA-LPEITTFGLDVSKVAIKAAAKR--------YPQVT 133
Query: 92 WVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSR--ISVLDFNKSTQ 149
+ + LPFSD DAI Y EE RV+KPG + +
Sbjct: 134 FCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPRHLME 186
Query: 150 PFTTAIQEWMIDNVVVPVASGYGLAEE 176
E + G+ L +
Sbjct: 187 LKGLIYNEVHLHAPHAEQLEGFTLQQS 213
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 2e-17
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 19/107 (17%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94
VL+ CG G + Q + DFS L +A + + + E
Sbjct: 49 QTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARAN--------APHADVYE 97
Query: 95 GDALD-LPFSDC-FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139
+ LP F I G + + + P +
Sbjct: 98 WNGKGELPAGLGAPFGLIVSRRGPTS------VILRLPELAAPDAHF 138
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 2e-17
Identities = 21/117 (17%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIE 91
+ G + D+ CG+G + LL++ +V G+D S+ L +A + + ++++
Sbjct: 31 VEPGKRIADIGCGTGTATLLLADHY----EVTGVDLSEEMLEIAQEK----AMETNRHVD 82
Query: 92 WVEGDALDLPFSDCFFDAITMGYG---LRNVVDKRKALEESFRVLKPGSRISVLDFN 145
+ D +L + + L+ D ++ + + R+L G ++ + D +
Sbjct: 83 FWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKL-LFDVH 138
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 2e-17
Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 16/131 (12%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94
++D CG+G + LS+ VIGLD SK+ L +A+ NI +
Sbjct: 57 ELPLIDFACGNGTQTKFLSQFFPR---VIGLDVSKSALEIAAKE------NTAANISYRL 107
Query: 95 GDALDL----PFSDCFFDAITMGYGLRNVV---DKRKALEESFRVLKPGSRISVLDFNKS 147
D L DA + + + + +L + +++
Sbjct: 108 LDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG 167
Query: 148 TQPFTTAIQEW 158
F ++ E
Sbjct: 168 CIDFFNSLLEK 178
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 5e-17
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 90
+ + VLD+ CG G L L+++ + +G+D + + A +
Sbjct: 49 LGRQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAA----GAGEVHLA 101
Query: 91 EWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139
+ + +P +D I + L D + L +L PG +
Sbjct: 102 SYAQLAEAKVPVGKD-YDLICANFAL-LHQDIIELLSAMRTLLVPGGAL 148
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 8e-17
Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 11/142 (7%)
Query: 18 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 77
+ R + + ++ + N D+ CG G+ + LL+++ G + G+D + L A+
Sbjct: 18 RTRPARDL-LAQVPLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAAD 75
Query: 78 RQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGS 137
R N + + D + D + + V D L + L+ G
Sbjct: 76 R--------LPNTNFGKADLATWKPAQK-ADLLYANAVFQWVPDHLAVLSQLMDQLESGG 126
Query: 138 RISVLDFNKSTQPFTTAIQEWM 159
++V + +P A+ E
Sbjct: 127 VLAVQMPDNLQEPTHIAMHETA 148
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-16
Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 20/162 (12%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIE 91
D+ LD+ CG+G+L+ L + +D S+ LS A ++ ++
Sbjct: 36 LVFDDYLDLACGTGNLTENLCP----KFKNTWAVDLSQEMLSEAENK----FRSQGLKPR 87
Query: 92 WVEGDALDLPFSDCFFDAITMGYG----LRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147
D +L + FD IT + + D +K + LK G + D N
Sbjct: 88 LACQDISNLNINRK-FDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVF-IFDINS- 144
Query: 148 TQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLT 189
+ + + +N E Q+ + +++
Sbjct: 145 ----YYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYIS 182
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 2e-16
Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 25/146 (17%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
+ D +L + CG+ LS+ L V +D+S ++ + A + W
Sbjct: 41 RPEDRILVLGCGNSALSYELFLGGFPN--VTSVDYSSVVVAAMQAC-----YAHVPQLRW 93
Query: 93 VEGDALDLPFSDCFFDAI---------------TMGYGLRNVVDKRKALEESFRVLKPGS 137
D L F FD + V + L E RVL PG
Sbjct: 94 ETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGG 153
Query: 138 RISVLDFNKS---TQPFTTAIQEWMI 160
R + T+ + A W +
Sbjct: 154 RFISMTSAAPHFRTRHYAQAYYGWSL 179
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 74.8 bits (183), Expect = 3e-16
Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 11/129 (8%)
Query: 24 RMAVSWSGAKTGDNVLDVCCGSGDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 82
+ + + G+ + + G L+ LLS G +V ++ + ++ + ++
Sbjct: 112 KNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELS---RKVI 166
Query: 83 SKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142
+ + GD + + FD + KR+ R + +RI
Sbjct: 167 EGLGVDGVNVITGDETVIDGLE--FDVL---MVAALAEPKRRVFRNIHRYVDTETRIIYR 221
Query: 143 DFNKSTQPF 151
+
Sbjct: 222 TYTGMRAIL 230
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 3e-16
Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 9/133 (6%)
Query: 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD 80
R ++ LD G G ++ L ++ + L+ K+ L A
Sbjct: 80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYAT--TDLLEPVKHMLEEAKRE-- 135
Query: 81 LVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSR 138
A +++ +D I + + + D K + + L P
Sbjct: 136 ---LAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGY 192
Query: 139 ISVLDFNKSTQPF 151
I + + F
Sbjct: 193 IFFKENCSTGDRF 205
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 4e-16
Identities = 31/158 (19%), Positives = 42/158 (26%), Gaps = 33/158 (20%)
Query: 18 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 77
Q + A D ++D CG G + + GS+ V G+ S Q +
Sbjct: 104 QAE---FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSR--VEGVTLSAAQADFGNR 158
Query: 78 R------QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM----GYGLRNVVDKRKALE 127
R D V + LD PF A Y VD
Sbjct: 159 RARELRIDDHV--------RSRVCNMLDTPFDKGAVTASWNNESTMY-----VDLHDLFS 205
Query: 128 ESFRVLKPGSR-----ISVLDFNKSTQPFTTAIQEWMI 160
E R LK G R + + I
Sbjct: 206 EHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFE 243
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-15
Identities = 31/202 (15%), Positives = 57/202 (28%), Gaps = 39/202 (19%)
Query: 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNI 90
++LDV CG+G ++ + GL+ S++ L+ A R +
Sbjct: 38 TPEASSLLDVACGTGTHLEHFTK----EFGDTAGLELSEDMLTHARKR--------LPDA 85
Query: 91 EWVEGDALDLPFSDCFFDAITMGYG----LRNVVDKRKALEESFRVLKPGSRISVLDFNK 146
+GD D F A+ + L+ + A+ L+PG + V++
Sbjct: 86 TLHQGDMRDFRLGRK-FSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVV-VVEPWW 143
Query: 147 STQPF---TTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK------------ 191
+ F + D V S ++ GK
Sbjct: 144 FPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSDVHLIT 203
Query: 192 -----DLEKLALEIGFSRAKHY 208
+ E G
Sbjct: 204 LFHQAEYEAAFTAAGLRVEYLE 225
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 3e-15
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVS 83
A+ S A+ V+D+ CG G+L +L + ++ G+D S L +A R + +
Sbjct: 24 ALKQSNARR---VIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEIAQERLDRLRLP 79
Query: 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKA--LEESFRVLKPGSRI 139
+ ++ ++ ++G +DA T+ + ++ R F +P I
Sbjct: 80 RNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVI 137
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 4e-15
Identities = 30/204 (14%), Positives = 61/204 (29%), Gaps = 28/204 (13%)
Query: 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNI 90
VL++ G G L+F + G +V L+ S + L+ R
Sbjct: 80 GPVSGPVLELAAGMGRLTFPFLDL----GWEVTALELSTSVLAAFRKRLAEAPADVRDRC 135
Query: 91 EWVEGDALDLPFSDCFFDAITMGYGLRNVV---DKRKALEESFRVLKPGSRISVLDFN-- 145
V+GD F + + G N + D+R L+PG + +L
Sbjct: 136 TLVQGDMSAFALDKR-FGTVVISSGSINELDEADRRGLYASVREHLEPGGKF-LLSLAMS 193
Query: 146 ---------KSTQPFTTAIQEWMIDNVVVPVASG------YGLAEEYQYLKSSIRE-FLT 189
+ + + + +++ +P ++ + R L
Sbjct: 194 EAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLA 253
Query: 190 GKDLEKLALEIGFSRAKHYELSGG 213
+ + + GF + G
Sbjct: 254 PDQVVRELVRSGFDVIAQTPFASG 277
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 7e-15
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR---QDLVSKACYKNIEWVE 94
++D CGSG L L + S +IG+D S L+ A+ + K+ +
Sbjct: 725 LVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784
Query: 95 GDALDLPFSDCFFDAITMGYGLRNVVDKR--KALEESFRVLKPG 136
G L+ D T + ++ + + + E+ + P
Sbjct: 785 GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK 828
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 1e-14
Identities = 34/201 (16%), Positives = 56/201 (27%), Gaps = 37/201 (18%)
Query: 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNI 90
+ ++LDV CG+G L++ V GL+ S + L++A R +
Sbjct: 48 SPKAASLLDVACGTGMHLRHLAD----SFGTVEGLELSADMLAIARRR--------NPDA 95
Query: 91 EWVEGDALDLPFSDCFFDAITMGYG----LRNVVDKRKALEESFRVLKPGSR--ISVLDF 144
GD D F A+T + L + ALE + P + F
Sbjct: 96 VLHHGDMRDFSLGRR-FSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWF 154
Query: 145 NKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK------------- 191
++ P A V S E ++ +
Sbjct: 155 PENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITL 214
Query: 192 ----DLEKLALEIGFSRAKHY 208
E+ G S
Sbjct: 215 FTREQYERAFTAAGLSVEFMP 235
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 2e-14
Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 37/178 (20%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
K VLD+ C SG L + E +V G++ A K ++
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQA--------KEKLDHVVL 79
Query: 93 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSR--ISVLDFNKSTQP 150
+ + +D+P+ + FD + G L ++ D +E+ +K S+ N S
Sbjct: 80 GDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIP--NVSHIS 137
Query: 151 FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE-----FLTGKDLEKLALEIGFS 203
+ LA + Y + + + F T ++ ++ L+ G+S
Sbjct: 138 VLAPL-----------------LAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYS 178
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 2e-14
Identities = 19/137 (13%), Positives = 47/137 (34%), Gaps = 7/137 (5%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
++ + + +R LD G G ++ L + + V +D +
Sbjct: 54 HISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFRE--VDMVDIT 111
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK--RKAL 126
++ L A + + + + + D +D I + + + ++ D+ + L
Sbjct: 112 EDFLVQAKTY---LGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFL 168
Query: 127 EESFRVLKPGSRISVLD 143
L+P I + D
Sbjct: 169 RRCKGSLRPNGIIVIKD 185
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 2e-14
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 5/118 (4%)
Query: 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81
V G VL+ GSG L+ L VG G+VI + + A
Sbjct: 87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG 146
Query: 82 VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139
N V D D D D + +++ + L+ R+L G +
Sbjct: 147 CYGQPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVL 199
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 2e-14
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 12/124 (9%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94
N L++ C +G + L+ + +D + A R + +I W
Sbjct: 52 VSNGLEIGCAAGAFTEKLAPHCKR---LTVIDVMPRAIGRACQRT-----KRWSHISWAA 103
Query: 95 GDALDLPFSDCFFDAIT---MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 151
D L ++ FD I + Y L ++ R A++ ++L PG + +T
Sbjct: 104 TDILQFSTAEL-FDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRR 162
Query: 152 TTAI 155
+
Sbjct: 163 WGHV 166
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 4e-14
Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 9/128 (7%)
Query: 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKA 85
VS + +L + G G + L+ G +V +D S L+ A ++
Sbjct: 22 VSVANQIPQGKILCLAEGEGRNACFLASL----GYEVTAVDQSSVGLAKAKQL----AQE 73
Query: 86 CYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145
I V+ + D ++ I + +++ + ++ LKPG + F
Sbjct: 74 KGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFA 133
Query: 146 KSTQPFTT 153
+ T
Sbjct: 134 PEQLQYNT 141
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 9e-14
Identities = 23/116 (19%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC 86
+ G + G ++L+V GSG++S + + +G + ++ ++ L A +L
Sbjct: 103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKA--MDNLSEFYD 160
Query: 87 YKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142
N+ D D D +DA+ ++ D +++ ++KPGS +
Sbjct: 161 IGNVRTSRSDIADFIS-DQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFY 210
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 2e-13
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 18/158 (11%)
Query: 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVSKACYKNIEWVEG 95
V+D+ CG G+L LL + S ++ G+D S + L A R D + + K I +
Sbjct: 33 VIDLGCGEGNLLSLLLKD-KSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS 91
Query: 96 DALDLPFSDCFFDAITMGYGLRNVVDKRKA--LEESFRVLKPGSRI-SVL--DFNKSTQP 150
+ +DA T+ + ++ + R + F +P + I S ++N
Sbjct: 92 SLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGN 151
Query: 151 FTTA-------IQEWMIDNV---VVPVASGYGLAEEYQ 178
EW V VA YG + +
Sbjct: 152 LFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFL 189
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 5e-13
Identities = 24/176 (13%), Positives = 56/176 (31%), Gaps = 7/176 (3%)
Query: 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNI 90
NV D+ C G + + K+IG+D S+ + + + +
Sbjct: 56 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQH--IAAYHSEIPV 113
Query: 91 EWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 150
E + D + + + D+ L + + L P + + + +
Sbjct: 114 EILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDT 173
Query: 151 FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS--SIREFLTGKDLEKLALEIGFSR 204
+ + A+GY E Q + ++ + + + +GFS+
Sbjct: 174 KINHLLIDLHHQFK--RANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQ 227
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 8e-13
Identities = 24/200 (12%), Positives = 63/200 (31%), Gaps = 29/200 (14%)
Query: 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGD-----LSFLLSEQVGSQGKVIGLDFSKNQLS 73
+ + K+ +L + G+G+ LS + ++ G ++ S Q++
Sbjct: 37 DKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIA 96
Query: 74 MASSRQDLVSKACYKNIEWVEGDA------LDLPFSDCFFDAITMGYGLRNVVDKRKALE 127
S W + + + +D I M L V D L+
Sbjct: 97 KYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLK 156
Query: 128 ESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREF 187
+L +++ ++ + S+ + ++ + + ++
Sbjct: 157 FFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGS------------------RFPQDDLCQY 198
Query: 188 LTGKDLEKLALEIGFSRAKH 207
+T DL ++ +G +
Sbjct: 199 ITSDDLTQMLDNLGLKYECY 218
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 1e-12
Identities = 22/136 (16%), Positives = 56/136 (41%), Gaps = 14/136 (10%)
Query: 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83
+ V+++G GD +++ GSG L+ L+ VG +G+V+ + ++ +A + +
Sbjct: 83 ALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLA---WENIK 139
Query: 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143
A + + ++ + + D + + ++ + +E + + LKPG
Sbjct: 140 WAGFDDRVTIKLKDIYEGIEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAY- 193
Query: 144 FNKSTQPFTTAIQEWM 159
P + +
Sbjct: 194 -----TPCSNQVMRLH 204
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-12
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 22/134 (16%)
Query: 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78
H + V+D G+G+ + L+ G KV D + L S R
Sbjct: 13 HDFLAEVL------DDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALGKTSQR 63
Query: 79 QDLVSKACYKNIEWVEGDA------LDLPFSDCFFDAITMGYGLRNVVDKR----KALEE 128
+S +N E + + P F+ + ++V+ K +A+E+
Sbjct: 64 ---LSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEK 120
Query: 129 SFRVLKPGSRISVL 142
L+ G R++++
Sbjct: 121 ILDRLEVGGRLAIM 134
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 1e-12
Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 23/134 (17%)
Query: 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR------QDLVSK 84
K G +LD+ GSG++ + G G+D S + A R + V
Sbjct: 33 RMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERV-- 88
Query: 85 ACYKNIEWVEGDALDLPFSDCFFDAIT---MGYGLRNVVDKRKALEESFRVLKPGSRISV 141
++ DA + D + A E + LKPG + +
Sbjct: 89 ------HFIHNDAAGYVA-NEKCDVAACVGATW---IAGGFAGAEELLAQSLKPGGIMLI 138
Query: 142 LDFNKSTQPFTTAI 155
+ P T I
Sbjct: 139 GEPYWRQLPATEEI 152
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 2e-12
Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 18/137 (13%)
Query: 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSR-Q 79
+K + VLDV CG+G S +L E +G V +D S L A
Sbjct: 45 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVE----EGFSVTSVDASDKMLKYALKERW 100
Query: 80 DLVSKACYKNIEWVEGDALDLPFSDCF---FDAITM-----GY---GLRNVVDKRKALEE 128
+ + + E + L L FDA+ + + + R AL+
Sbjct: 101 NRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKN 160
Query: 129 SFRVLKPGSRISVLDFN 145
+++PG + V+D
Sbjct: 161 IASMVRPGGLL-VIDHR 176
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 3e-12
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 11/132 (8%)
Query: 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78
+ + + + A+ G VLD GSG ++ + +G V D + +L +A
Sbjct: 188 TPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLA--- 244
Query: 79 QDLVSKACYKNIEWVEGDALDLPFSDCFFDAI--TMGYGLRNVVDK------RKALEESF 130
++ + I ++ DA LP D I +GLR + L +
Sbjct: 245 REAALASGLSWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGAL 304
Query: 131 RVLKPGSRISVL 142
+L PG R+++L
Sbjct: 305 ALLPPGGRVALL 316
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 5e-12
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
G +L++ CG+G + + G V D S + AS R
Sbjct: 42 PAGAKILELGCGAGYQAEAMLAA-GFD--VDATDGSPELAAEASRR---------LGRPV 89
Query: 93 VEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPG 136
L D +DA+ L +V + L+ +R LKPG
Sbjct: 90 RTMLFHQLDAIDA-YDAVWAHACLLHVPRDELADVLKLIWRALKPG 134
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 1e-11
Identities = 26/140 (18%), Positives = 37/140 (26%), Gaps = 37/140 (26%)
Query: 19 HRIWKRMAVSW------------SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD 66
HR ++ W V D CG L+ + V D
Sbjct: 40 HRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIRN------PVHCFD 93
Query: 67 FSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKAL 126
+ D +P D D L + R L
Sbjct: 94 L------------------ASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGT-NIRDFL 134
Query: 127 EESFRVLKPGSRISVLDFNK 146
EE+ RVLKPG + V + +
Sbjct: 135 EEANRVLKPGGLLKVAEVSS 154
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 1e-11
Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 11/127 (8%)
Query: 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKA 85
+ LD+ CG+G S L+ G V D + ++ + + S
Sbjct: 25 LEAVKVVKPGKTLDLGCGNGRNSLYLAA----NGYDVDAWDKNAMSIANV---ERIKSIE 77
Query: 86 CYKNIEWVEGDALDLPFSDCFFDAITMGYGLR--NVVDKRKALEESFRVLKPGSRISVLD 143
N+ D +L F +D I L + R KPG ++
Sbjct: 78 NLDNLHTRVVDLNNLTFDRQ-YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136
Query: 144 FNKSTQP 150
+
Sbjct: 137 AMDTADY 143
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 9e-11
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 18/125 (14%)
Query: 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78
+ R+ K VLD+ CG G+ L E+ + IG+D +++ +
Sbjct: 26 ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMI------ 76
Query: 79 QDLVSKACYKNIEWVEGDALD--LPFSDCFFDAITMGYGLRNVVDKR--KALEESFRVLK 134
K C V+ DA++ D + D + + + + ++ +R + L + +K
Sbjct: 77 -----KFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMK 131
Query: 135 PGSRI 139
S I
Sbjct: 132 YSSYI 136
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 2e-10
Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 12/177 (6%)
Query: 13 LLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQL 72
+F + M +++ N+L++ GD + L E + ++ S+ +
Sbjct: 21 AYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAI 77
Query: 73 SMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE-SFR 131
S A R I ++ D +D I + + L ++ D L+ +
Sbjct: 78 SHAQGRLK-------DGITYIHSRFEDAQLPRR-YDNIVLTHVLEHIDDPVALLKRINDD 129
Query: 132 VLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
L G R+ ++ N + A++ +I + + + Y ++
Sbjct: 130 WLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDA 186
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 9e-10
Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 36/193 (18%)
Query: 18 QHRIW-----KRMAVSWSG-----AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF 67
++R W K A G K GD +L + SG + +S+ +G +G++ G++F
Sbjct: 51 EYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEF 110
Query: 68 SKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV-VDKRKA 125
+ +DL++ +NI + GDA + + Y
Sbjct: 111 A------PRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIV 164
Query: 126 LEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS-- 183
+ + L+ G + + AI+ ID P E + L
Sbjct: 165 VRNARFFLRDGGYMLM------------AIKARSIDVTTEPSEV---YKREIKTLMDGGL 209
Query: 184 -IREFLTGKDLEK 195
I++ + ++
Sbjct: 210 EIKDVVHLDPFDR 222
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 1e-09
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 15/126 (11%)
Query: 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83
M +S GD VL+ GSG +S LS+ VGSQG+VI + K+ +A
Sbjct: 95 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 154
Query: 84 KAC--------YKNIEWVEGDALDLPFSDC--FFDAITMGYGLRNVVDKRKALEESFRVL 133
+ N++++ D FDA+ + ++++ L + L
Sbjct: 155 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHL 209
Query: 134 KPGSRI 139
K G
Sbjct: 210 KHGGVC 215
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-09
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC 86
K GD ++D GSG + +L+ VGS GKV + + +A +L
Sbjct: 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLA--ESNLTKWGL 162
Query: 87 YKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142
+ + D + DA+ + +V D +++ + LK G R + +
Sbjct: 163 IERVTIKVRDISEGFDEK-DVDALFL-----DVPDPWNYIDKCWEALKGGGRFATV 212
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 6e-09
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 9/116 (7%)
Query: 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 84
+A+S K + + D+ GSG ++ + Q + + S+ + S
Sbjct: 16 LAISALAPKPHETLWDIGGGSGSIAIEWL-RSTPQTTAVCFEISEERRERILSNAI---N 71
Query: 85 ACYKNIEWVEGDALD-LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139
+ V+ A D I +G G + +++ L G R+
Sbjct: 72 LGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGG----LTAPGVFAAAWKRLPVGGRL 123
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 7e-09
Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 27/147 (18%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94
G +LDV L L E+ G I + + A +++ + + I+
Sbjct: 16 GAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSA--VKNVEAHGLKEKIQVRL 72
Query: 95 GDALDLPFSDCFFDAIT---MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 151
+ L IT MG L + LEE L R+ +L QP
Sbjct: 73 ANGLAAFEETDQVSVITIAGMGGRLI-----ARILEEGLGKLANVERL-IL------QPN 120
Query: 152 TTA--IQEWMIDNVVVPVASGYGLAEE 176
++ W+ D+ G+ + E
Sbjct: 121 NREDDLRIWLQDH-------GFQIVAE 140
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 53.8 bits (128), Expect = 8e-09
Identities = 33/198 (16%), Positives = 57/198 (28%), Gaps = 28/198 (14%)
Query: 30 SGAKTGDNVLDVCCGSG-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR----QDLVSK 84
K VLD+ CG G DL ++ K++ D + + R ++
Sbjct: 30 QKKKRDITVLDLGCGKGGDLLKWKKGRI---NKLVCTDIADVSVKQCQQRYEDMKNRRDS 86
Query: 85 ACYKNIEWVEGDALDLPFSDCF------FDAIT----MGYGLRNVVDKRKALEESFRVLK 134
+ E++ D+ D F FD + Y + L + L
Sbjct: 87 EYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLS 146
Query: 135 PGSRISVLDFNKSTQ-PFTTAIQEWMIDNVVVPV-------ASGYGLAEE-YQYLKSSIR 185
PG N A + N + V +G + +
Sbjct: 147 PGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVP 206
Query: 186 EFLTGKD-LEKLALEIGF 202
EFL L ++A +
Sbjct: 207 EFLVYFPLLNEMAKKYNM 224
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 1e-08
Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 32/178 (17%)
Query: 17 GQHRIWKRMAVSWSGA----------KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD 66
++RIW A K G +VL + SG + +S+ VG +GK+ G++
Sbjct: 46 EEYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIE 105
Query: 67 FSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALD-------LPFSDCFFDAITMGYGLRN 118
FS ++LV +NI + GDA +P D F+ +
Sbjct: 106 FS------PRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPT---- 155
Query: 119 VVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEE 176
+ ++ + LK G + KS T E + V ++ + + E
Sbjct: 156 --QAKILIDNAEVYLKRG--GYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIER 209
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-08
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 24/188 (12%)
Query: 32 AKTGDNVLDVCCGSG-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 90
K GD+VLD+ CG G DL + G+ G+D ++ ++ A R + + +
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYERAGI---GEYYGVDIAEVSINDARVRARNMKRRFK--V 116
Query: 91 EWVEGDALDLPFSDCF-FDAITMGYGL----RNVVDKRKALEESFRVLKPGSRISVLDFN 145
+ D+ FD I+ + A R L+PG + +
Sbjct: 117 FFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176
Query: 146 KSTQPFTTAIQEWMIDNVVVPV-------ASGYGLAEEYQYLKSSI---REFLTGKD-LE 194
+ ++ + N + + E L S+ E+ +
Sbjct: 177 R--DVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMV 234
Query: 195 KLALEIGF 202
+G
Sbjct: 235 DGFKRLGL 242
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 2e-08
Identities = 26/162 (16%), Positives = 47/162 (29%), Gaps = 20/162 (12%)
Query: 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC---- 86
D +D+ G G + ++ + G++ + A + K
Sbjct: 170 KMTDDDLFVDLGSGVGQVVLQVAAATNCK-HHYGVEKADIPAKYAETMDREFRKWMKWYG 228
Query: 87 --YKNIEWVEGDALDLPFSDCFFDA---ITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141
+ GD L + + + + VD + L+E F +K G RI
Sbjct: 229 KKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQ--LKERFANMKEGGRIVS 286
Query: 142 LDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183
K P I + ++ E LK S
Sbjct: 287 S---KPFAPLNFRINSRNLSDI-----GTIMRVVELSPLKGS 320
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 4e-08
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN 89
+ + L CG G ++ V+GLD S++ L+ A+ KA
Sbjct: 62 TSSLPLGRALVPGCGGGHDVVAMASP-ERF--VVGLDISESALAKANETYGSSPKAE--Y 116
Query: 90 IEWVEGDALDLPFSDCFFDAITMGYGL--RNVVDKRKALEESFRVLKPGSRISVLDFNKS 147
+V+ D ++ FD I + + + +LKP + L + +
Sbjct: 117 FSFVKEDVFTWRPTEL-FDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPIT 175
Query: 148 TQP 150
Sbjct: 176 DHV 178
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 8e-08
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQ-DLVSKACYKNIEWVEGD 96
+D+ G G + L+ + IG+D K L S + SK N+ +V
Sbjct: 28 HIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAA 86
Query: 97 ALDLPFS-DCFFDAITMGY-----GLRNVVDKRKALEESFRVLKPGSRISVLDFN 145
A LPF D+I++ + + R L + K + +
Sbjct: 87 AESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTY 141
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-07
Identities = 24/147 (16%), Positives = 42/147 (28%), Gaps = 23/147 (15%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
G +LDV L L + G I + A +++ I+
Sbjct: 20 PKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSA--LKNVSEHGLTSKIDV 76
Query: 93 VEGDALD-LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 151
+ L +D G G R + L L+ + VL QP
Sbjct: 77 RLANGLSAFEEADNIDTITICGMGGRLI---ADILNNDIDKLQHVKTL-VL------QPN 126
Query: 152 TTA--IQEWMIDNVVVPVASGYGLAEE 176
+++W+ N + + E
Sbjct: 127 NREDDLRKWLAAN-------DFEIVAE 146
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-07
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 27/164 (16%)
Query: 18 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 77
+ ++ KR+ S + + D+ L + + I + A
Sbjct: 5 EEQLSKRLEKVASYITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSA-- 61
Query: 78 RQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT---MGYGLRNVVDKRKALEESFRVLK 134
++ + S + I+ +G+ L + D I MG L R LEE L
Sbjct: 62 QKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGGTLI-----RTILEEGAAKLA 116
Query: 135 PGSRISVLDFNKSTQPFTTA--IQEWMIDNVVVPVASGYGLAEE 176
+++ +L QP A ++EW N + + E
Sbjct: 117 GVTKL-IL------QPNIAAWQLREWSEQN-------NWLITSE 146
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 3e-07
Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83
V+ G VL+ GSG L+ L+ VG +G V + + L+ A +++ +
Sbjct: 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQA--ERNVRA 143
Query: 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139
+N+ + G + + +D + + ++++ K LE++ LKP +
Sbjct: 144 FWQVENVRFHLGKLEEAELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFL 194
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 4e-07
Identities = 20/122 (16%), Positives = 35/122 (28%), Gaps = 10/122 (8%)
Query: 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 90
+ VLD+ CG G S LS G V D ++N ++ + + NI
Sbjct: 117 KIISPCKVLDLGCGQGRNSLYLSLL-GYD--VTSWDHNENSIAFLNET----KEKENLNI 169
Query: 91 EWVEGDALDLPFSDCFFDAITMGYGLR--NVVDKRKALEESFRVLKPGSRISVLDFNKST 148
D + +D I N ++ G ++ +
Sbjct: 170 STALYDINAANIQEN-YDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTD 228
Query: 149 QP 150
Sbjct: 229 DV 230
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 2e-06
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 4/110 (3%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94
G +VLD+ C G L+ ++ + G +++GLD + A + + + +
Sbjct: 47 GRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSA---RQNIRHYLSEELRLPP 102
Query: 95 GDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144
P ++ T+ + P F
Sbjct: 103 QTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVF 152
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Length = 344 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 29/142 (20%)
Query: 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLS------EQVGSQGKVIGLDFSKNQLSMASS 77
+ K ++LD CG+ + L + + G+D +S+A
Sbjct: 120 YLLEKVIQKKKNVSILDPACGTA--NLLTTVINQLELKGDVDVHASGVDVDDLLISLALV 177
Query: 78 RQDLVSKACYKNIEWVEGDAL-------------DLPFSDCFFDAITMGYGLRNVVDKRK 124
DL + + + D L DLP D + L
Sbjct: 178 GADL----QRQKMTLLHQDGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSF 233
Query: 125 A----LEESFRVLKPGSRISVL 142
A +E+ R KPG + L
Sbjct: 234 AHFLFIEQGMRYTKPGGYLFFL 255
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 25 MAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 82
+ A D +DV CG+G ++ L+ +V +V +D +N +++++ +L
Sbjct: 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAID--RNPEAISTTEMNLQ 76
Query: 83 SKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139
N+ +EGDA + D +G + ++ L LKPG RI
Sbjct: 77 RHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGEL---QEILRIIKDKLKPGGRI 130
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 5e-06
Identities = 27/202 (13%), Positives = 70/202 (34%), Gaps = 29/202 (14%)
Query: 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 85
V+ + + VLD+ G +++ ++ G+D++ + ++++ +
Sbjct: 158 LVNENKIEPL-KVLDISASHGLFGIAVAQH-NPNAEIFGVDWAS---VLEVAKENARIQG 212
Query: 86 CYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLD 143
+ G A ++ + + + D + + L + + L + L ++ V D
Sbjct: 213 VASRYHTIAGSAFEVDYGNDY-DLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFD 271
Query: 144 F---NKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEI 200
F + P A ++ +G + T + E +
Sbjct: 272 FIPNSDRITPPDAA---AFSLVMLATTPNG--------------DAY-TFAEYESMFSNA 313
Query: 201 GFSRAKHYELSGGLMGNLVATR 222
GFS ++ + L +VA +
Sbjct: 314 GFSHSQLHSLPTTQQQVIVAYK 335
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-06
Identities = 22/186 (11%), Positives = 55/186 (29%), Gaps = 31/186 (16%)
Query: 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 85
G K ++DV G GD+S + + + L+ ++ ++ K
Sbjct: 185 EAKLDGVKK---MIDVGGGIGDISAAMLKHF-PELDSTILNLPG---AIDLVNENAAEKG 237
Query: 86 CYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLD 143
+ + D + + DA+ L + + +++F ++ G R+ +LD
Sbjct: 238 VADRMRGIAVDIYKESYPEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295
Query: 144 F---NKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEI 200
+ F + + V +++ +
Sbjct: 296 MVIDDPENPNFDYLSHYILGAGMPFSVLGFK-----------------EQARYKEILESL 338
Query: 201 GFSRAK 206
G+
Sbjct: 339 GYKDVT 344
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 6e-06
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 10/142 (7%)
Query: 16 FGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA 75
F + +R+ ++ AK + V+D+ G G L V + KVI ++
Sbjct: 108 FSPANVKERVRMA-KVAKPDELVVDMFAGIG--HLSLPIAVYGKAKVIAIEKDPYTFKFL 164
Query: 76 SSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKP 135
+++ + D D P + D I MGY VV + + ++ + K
Sbjct: 165 --VENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGY----VVRTHEFIPKALSIAKD 217
Query: 136 GSRISVLDFNKSTQPFTTAIQE 157
G+ I + +
Sbjct: 218 GAIIHYHNTVPEKLMPREPFET 239
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 7e-06
Identities = 31/204 (15%), Positives = 66/204 (32%), Gaps = 30/204 (14%)
Query: 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 85
V K +LD+ +G + + + +V +D QL M R+ +
Sbjct: 174 IVFSHHPKR---LLDIGGNTGKWATQCVQYN-KEVEVTIVDLP-QQLEMM--RKQTAGLS 226
Query: 86 CYKNIEWVEGDALD--LPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISV 141
+ I + LD +PF F DA+ M L ++ L + + S++ +
Sbjct: 227 GSERIHGHGANLLDRDVPFPTGF-DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYI 285
Query: 142 LDF---NKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLAL 198
++ + + + + + + + A+G + F DL +
Sbjct: 286 METLWDRQRYETASYCLTQISLYFTAM--ANGNS------------KMF-HSDDLIRCIE 330
Query: 199 EIGFSRAKHYELSGGLMGNLVATR 222
G + + G L
Sbjct: 331 NAGLEVEEIQDNIGLGHSILQCRL 354
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-05
Identities = 39/192 (20%), Positives = 61/192 (31%), Gaps = 39/192 (20%)
Query: 18 QHRIWKRMAVSWSGA----------KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF 67
++R W + A K G VL + SG +S+ VG G V ++F
Sbjct: 51 EYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEF 110
Query: 68 SKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDLPFSDCFF----DAITMGYGLRNVVDK 122
S S +DL++ A NI V DA P D I +
Sbjct: 111 S------HRSGRDLINLAKKRTNIIPVIEDA-RHPHKYRMLIAMVDVIFADVAQPD--QT 161
Query: 123 RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182
R + L+ G + +I+ ID+ A A E + ++
Sbjct: 162 RIVALNAHTFLRNGGHFVI------------SIKANCIDSTASAEAV---FASEVKKMQQ 206
Query: 183 SIREFLTGKDLE 194
+ LE
Sbjct: 207 ENMKPQEQLTLE 218
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-05
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD-------FSKNQLSMASSRQDLVSKA 85
G LDV GSG L+ + VG GKVIG+D S N + R+D +
Sbjct: 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV-----RKDDPTLL 130
Query: 86 CYKNIEWVEGD-ALDLPFSDCFFDAI 110
++ V GD + + +DAI
Sbjct: 131 SSGRVQLVVGDGRMGYA-EEAPYDAI 155
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 84
+A K G+ V+D+ G + L+E + ++GK+ D K ++ +D V +
Sbjct: 250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRL---KDFVKR 306
Query: 85 ACYKNIEWVEGDALDLP--FSDCFFDAI 110
K ++ + DA P + D +
Sbjct: 307 MGIKIVKPLVKDARKAPEIIGEEVADKV 334
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 31/203 (15%), Positives = 68/203 (33%), Gaps = 34/203 (16%)
Query: 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 85
++ A+T V+D+ G G + + Q D + ++R+ + +
Sbjct: 174 LGVFARART---VIDLAGGHGTYLAQVLRRH-PQLTGQIWDLPT---TRDAARKTIHAHD 226
Query: 86 CYKNIEWVEGDAL-DLPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVL 142
+E+ E + L F D + + L + R+ + + ++KPG + +L
Sbjct: 227 LGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLIL 286
Query: 143 DF---NKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALE 199
+ P +A +++V G E + + + +
Sbjct: 287 TMTMNDDRVTPALSA---DFSLHMMVNTNHG----ELH-----------PTPWIAGVVRD 328
Query: 200 IGFSRAKHYELSGGLMGNLVATR 222
G + E S G L+ R
Sbjct: 329 AGLAVG---ERSIGRYTLLIGQR 348
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 26/130 (20%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94
++D+C G+G + LLS + + K++G++ + MA ++ + IE +E
Sbjct: 50 KGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMA--KRSVAYNQLEDQIEIIE 105
Query: 95 GDALDLP--FSDCFFDAITM--------GYGLRNVVDKRKA------------LEESFRV 132
D + D +T L+N + + + + +
Sbjct: 106 YDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASL 165
Query: 133 LKPGSRISVL 142
LK G + + +
Sbjct: 166 LKQGGKANFV 175
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-05
Identities = 25/198 (12%), Positives = 62/198 (31%), Gaps = 28/198 (14%)
Query: 30 SGAKTGDNVLDVCCGSG-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR---QDLVSKA 85
VL + G+G DL ++ ++ D + ++ + R + K
Sbjct: 44 LDDSNKRKVLAIDFGNGADLEKYFYGEI---ALLVATDPDADAIARGNERYNKLNSGIKT 100
Query: 86 CYKNIEWVEGD--------ALDLPFSDCFFDAITMGYGLRNVV---DKRKALEESFRVLK 134
Y ++++ ++ F F+ I + + + +
Sbjct: 101 KYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTA 160
Query: 135 PGSRISVLDFN-----KSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS----IR 185
G ++ + + K T T I + + + Y S+ +
Sbjct: 161 SGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPMT 220
Query: 186 EFLTGKD-LEKLALEIGF 202
E++ K+ + ++ E GF
Sbjct: 221 EYIIKKNDIVRVFNEYGF 238
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-05
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL-VSKACYKNIEWV 93
G V+D+ G G L + + I ++ + A R ++ + K++ +
Sbjct: 94 GTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAA--RHNIPLLLNEGKDVNIL 148
Query: 94 EGDALDL--PFSDCFFDAITMGYGLRNVVDKRKALEESF 130
GD + D I + R+ DKR
Sbjct: 149 TGDFKEYLPLIKTFHPDYIYVDPARRSGADKRVYAIADC 187
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 9e-05
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACY 87
S + D+ G+G ++ ++ + +V + S+ A +L A +
Sbjct: 30 SLVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAF 88
Query: 88 KN-IEWVEGDALDLPFSDCF-------FDAITM 112
IE +E D + F + M
Sbjct: 89 SARIEVLEADVTLRAKARVEAGLPDEHFHHVIM 121
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 7/107 (6%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
+ + D+ GS +S S + G++ L+ + L K +N+
Sbjct: 39 QDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLK---KFVARNVTL 94
Query: 93 VEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139
VE A + D + +G + + ++ R LK I
Sbjct: 95 VEAFAPEGLDDLPDPDRVFIGGSGGMLEE---IIDAVDRRLKSEGVI 138
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 82
+ +A S + D V+D CG G + + +VI +D ++++A R +
Sbjct: 67 EHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALA--RNNAE 121
Query: 83 SKACYKNIEWVEGDALDL 100
IE++ GD L L
Sbjct: 122 VYGIADKIEFICGDFLLL 139
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 1e-04
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
K G VL++ G G + + +E VG G V+ ++ A + K Y N+
Sbjct: 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERT---LRKLGYDNVIV 132
Query: 93 VEGD-ALDLPFSDCFFDAI 110
+ GD L +D I
Sbjct: 133 IVGDGTLGYE-PLAPYDRI 150
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 2e-04
Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 32/165 (19%)
Query: 18 QHRIW-----KRMAVSWSGA-----KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF 67
++R W K G + G VL + SG +S+ + GK G++F
Sbjct: 50 EYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEF 109
Query: 68 SKNQLSMASSRQDLVSKA-CYKNIEWVEGDA-------LDLPFSDCFFDAITMGYGLRNV 119
S ++L+ A NI + DA + D + I
Sbjct: 110 S------PRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPD----- 158
Query: 120 VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVV 164
A+ + LK + ++ +S T + + V
Sbjct: 159 -QTDIAIYNAKFFLKVNGDMLLVIKARSIDV--TKDPKEIYKTEV 200
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
G VL++ G+G + ++S VG +G V+ +++S+ +A V + +N+ +
Sbjct: 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN---VERLGIENVIF 130
Query: 93 VEGD-ALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139
V GD +P +D I + G+ V + F LK G R+
Sbjct: 131 VCGDGYYGVP-EFSPYDVIFVTVGVDEV---PETW---FTQLKEGGRV 171
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 4e-04
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 16/118 (13%)
Query: 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR-QDLVSKACYKNI 90
++ D VLDV G G + ++ Q V+ LD K+++ S++ +K N+
Sbjct: 25 SQYDDVVLDVGTGDGKHPYKVARQ-NPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNL 83
Query: 91 EWVEGDALDLP---------FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139
++ A LP + + + + L V +PG+
Sbjct: 84 LYLWATAERLPPLSGVGELHVLMPWGSLLR-----GVLGSSPEMLRGMAAVCRPGASF 136
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 4e-04
Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 11/122 (9%)
Query: 18 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 77
+ + VL+ GSG L +LSE G + + A
Sbjct: 76 YPKDSFYI-ALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVW---TFEAVEEFYKTA-- 129
Query: 78 RQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGS 137
+++L KN+++ D D + F A + +V + LE+ + L G+
Sbjct: 130 QKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFV-----DVREPWHYLEKVHKSLMEGA 184
Query: 138 RI 139
+
Sbjct: 185 PV 186
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* Length = 277 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 4e-04
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 20/114 (17%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQ---VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN 89
K V+D+ CG G + + Q G +G +G D + +++ S ++++ +
Sbjct: 73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTD 132
Query: 90 IEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK-------RKALEESFRVLKPG 136
I +E D D +G + + L+ + L G
Sbjct: 133 IHRLEPVKCDTLLCD-------IG---ESSSSSVTEGERTVRVLDTVEKWLACG 176
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 6e-04
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
K G N+L+V GSG + L+SE V V ++ + A + +A KN+
Sbjct: 90 KPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRN---LERAGVKNVHV 144
Query: 93 VEGD-ALDLPFSDCFFDAI 110
+ GD + P +D I
Sbjct: 145 ILGDGSKGFP-PKAPYDVI 162
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227 | Back alignment and structure |
|---|
Score = 38.4 bits (90), Expect = 7e-04
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 33 KTGDNVLDVCCGSG----DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVSKAC 86
K G +DV GSG ++ ++ VIGL+ K+ ++ + +D
Sbjct: 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLK 138
Query: 87 YKNIEWVEGD-----ALDLPFSDCFFDAI 110
N + + + + FDAI
Sbjct: 139 IDNFKIIHKNIYQVNEEEKK-ELGLFDAI 166
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Length = 421 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 9e-04
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 18/100 (18%)
Query: 15 SFGQH----RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 70
S G+ + M VS + A G VL+ C G E G+ + +G++
Sbjct: 17 SLGRVETPPEVVDFM-VSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEI--- 72
Query: 71 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110
D + E + D L + FD I
Sbjct: 73 ---------DPKALDLPPWAEGILADFLLWEPGE-AFDLI 102
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 222 | |||
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.96 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.95 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.95 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.94 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.93 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.93 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.93 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.93 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.92 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.92 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.92 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.92 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.92 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.92 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.92 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.92 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.92 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.91 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.91 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.91 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.91 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.91 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.91 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.9 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.9 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.9 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.9 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.9 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.9 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.9 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.9 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.9 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.9 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.9 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.9 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.9 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.9 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.9 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.9 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.9 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.9 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.89 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.89 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.89 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.89 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.89 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.89 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.89 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.89 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.89 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.89 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.89 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.88 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.88 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.88 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.88 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.88 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.88 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.88 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.88 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.88 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.88 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.88 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.88 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.87 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.87 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.87 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.87 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.87 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.87 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.86 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.86 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.86 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.86 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.86 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.86 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.85 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.85 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.85 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.85 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.85 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.85 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.85 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.84 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.84 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.84 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.84 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.84 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.83 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.83 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.83 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.82 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.82 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.82 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.81 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.81 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.8 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.8 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.8 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.8 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.8 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.8 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.8 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.8 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.8 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.8 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.79 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.79 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.79 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.78 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.78 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.78 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.78 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.78 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.78 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.78 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.78 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.78 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.78 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.77 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.77 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.77 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.77 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.77 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.77 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.76 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.76 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.76 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.76 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.76 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.75 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.75 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.75 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.75 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.75 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.75 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.75 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.74 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.74 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.74 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.73 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.73 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.73 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.73 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.73 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.73 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.73 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.72 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.72 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.72 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.72 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.72 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.71 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.71 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.71 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.71 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.71 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.71 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.7 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.7 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.7 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.7 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.69 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.69 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.69 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.69 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.68 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.68 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.68 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.68 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.68 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.68 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.68 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.68 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.67 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.67 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.67 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.67 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.67 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.67 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.67 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.67 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.67 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.66 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.66 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.65 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.65 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.65 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.65 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.64 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.64 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.64 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.64 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.64 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.63 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.63 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.63 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.63 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.62 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.62 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.62 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.62 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.62 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.62 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.62 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.62 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.61 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.61 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.61 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.6 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.6 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.6 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.6 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.6 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.6 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.59 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.59 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.58 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.58 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.58 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.57 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.57 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.57 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.56 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.56 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.56 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.55 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.55 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.54 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.54 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.54 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.54 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.53 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.52 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.51 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.49 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.49 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.47 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.47 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.45 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.45 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.44 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.44 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.42 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.42 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.41 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.41 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.41 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.41 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.4 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.35 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.34 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.34 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.33 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.33 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.32 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.3 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.29 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.28 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.26 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.23 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.23 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.2 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.2 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.16 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.16 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.16 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.15 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.14 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.14 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 99.11 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.11 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 99.09 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.08 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 99.05 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 99.04 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.98 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.95 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.93 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.92 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.91 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.88 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.86 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.86 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.79 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.76 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.72 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.71 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.69 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.67 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.67 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.66 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.53 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.52 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.45 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.4 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.39 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.39 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.27 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 98.08 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 98.04 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.04 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 98.01 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.99 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.77 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.48 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.45 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.25 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 97.07 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.93 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.89 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.89 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.87 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.83 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.81 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.8 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.79 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.69 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.68 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.61 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.53 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.51 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.49 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.48 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.44 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.39 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 96.38 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.35 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.32 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.31 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.31 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 96.24 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.22 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.2 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.14 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.12 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 96.07 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.05 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.02 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.96 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.95 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.94 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.93 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.91 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.9 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.83 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.8 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.67 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.65 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.65 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.64 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.63 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.62 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.6 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.58 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.57 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.52 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.49 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 95.47 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.46 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.45 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.44 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.44 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.38 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 95.34 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.25 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.22 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.18 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 95.16 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 95.11 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.88 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 94.81 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.81 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 94.78 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.69 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.64 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 94.61 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 94.58 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 94.51 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 94.51 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.44 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 94.37 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 94.32 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 94.17 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 94.04 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.95 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 93.9 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 93.87 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 93.85 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 93.82 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 93.71 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 93.64 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 93.54 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.45 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 93.35 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.03 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 92.88 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 92.79 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 92.44 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 92.41 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 92.35 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 91.89 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 91.85 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 91.66 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 91.56 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 91.43 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 90.91 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 90.47 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 90.41 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 90.38 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 90.32 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 90.06 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 90.03 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 89.99 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 89.99 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 89.82 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 89.79 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 89.61 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 89.6 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 89.37 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 89.23 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 89.11 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 89.04 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 88.93 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.4 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 88.33 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 88.18 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 88.11 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 88.03 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 87.82 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 87.74 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 87.26 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 87.24 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 87.17 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 87.08 | |
| 1ej6_A | 1289 | Lambda2; icosahedral, non-equivalence, dsRNA virus | 87.07 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 86.86 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 86.86 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 86.68 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 86.58 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 86.31 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 86.02 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 85.99 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 85.84 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 85.82 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 85.8 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 85.72 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.56 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 85.4 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 84.76 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 84.75 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 84.71 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 84.62 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 84.59 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 84.29 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 83.95 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 83.92 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 83.84 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 83.6 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 83.4 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 83.14 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 83.05 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 82.88 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 82.78 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 82.72 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 82.72 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 82.28 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 81.78 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 81.71 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 81.08 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 80.87 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 80.79 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 80.63 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 80.35 | |
| 3iyl_W | 1299 | VP1; non-enveloped virus, membrane penetration pro | 80.16 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 80.11 |
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=177.13 Aligned_cols=183 Identities=16% Similarity=0.249 Sum_probs=133.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
.+|+.+|||+|||+|..+..+++.+. ++.+|+|+|+|+.|++.|++++...+.. .+++++++|+.++++ ++||+|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~--~~v~~~~~D~~~~~~--~~~d~v 143 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP--TPVDVIEGDIRDIAI--ENASMV 143 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS--SCEEEEESCTTTCCC--CSEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC--ceEEEeecccccccc--cccccc
Confidence 56889999999999999999998753 4568999999999999999987654332 589999999998875 459999
Q ss_pred EEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhH-HHHHHhhcccccccccCChhH-H-HHHhHHhHh
Q 027517 111 TMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTA-IQEWMIDNVVVPVASGYGLAE-E-YQYLKSSIR 185 (222)
Q Consensus 111 ~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 185 (222)
+++++++++++ ...++++++++|||||.+++.+......+.... ...++..-. ...++.... . .........
T Consensus 144 ~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~---~~~g~s~~ei~~~~~~l~~~~ 220 (261)
T 4gek_A 144 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFK---RANGYSELEISQKRSMLENVM 220 (261)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHH---HHTTGGGSTTHHHHHHHHHHC
T ss_pred eeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHhhhcccc
Confidence 99999999964 457899999999999999999988766543222 111111100 000000000 0 011112334
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
..+|.+++.++|+++||+.++++ +....+..++|+|
T Consensus 221 ~~~s~~~~~~~L~~AGF~~ve~~-fq~~nF~~~iA~K 256 (261)
T 4gek_A 221 LTDSVETHKARLHKAGFEHSELW-FQCFNFGSLVALK 256 (261)
T ss_dssp CCBCHHHHHHHHHHHTCSEEEEE-EEETTEEEEEEEC
T ss_pred cCCCHHHHHHHHHHcCCCeEEEE-EEeccEEEEEEEE
Confidence 56799999999999999999876 3444577788887
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=167.73 Aligned_cols=196 Identities=21% Similarity=0.213 Sum_probs=145.0
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (222)
+..|+.............+...+.+.+...++ +|||+|||+|..+..+++. ++.+++++|+++.+++.++++....+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~ 90 (219)
T 3dlc_A 14 AKNMDEISKTLFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADAN 90 (219)
T ss_dssp HHHHHHHHHTTTTTHHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhccccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhcc
Confidence 34555555554444455556667777776666 9999999999999999987 46699999999999999999876544
Q ss_pred hhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcc
Q 027517 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNV 163 (222)
Q Consensus 84 ~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~ 163 (222)
.. .++.+.+.|+.++++++++||+|+++.+++|++++..++++++++|+|||.+++.+...... .............
T Consensus 91 ~~--~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~~~~~~~~ 167 (219)
T 3dlc_A 91 LN--DRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKE-LRDSISAEMIRKN 167 (219)
T ss_dssp CT--TTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHH-HHHHHHHHHHHHC
T ss_pred cc--CceEEEEcCHHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHH-HHHHHHHHHHHhH
Confidence 22 58999999999988888899999999999999999999999999999999999987654331 1111111111000
Q ss_pred cccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeee
Q 027517 164 VVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMG 216 (222)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 216 (222)
..+..........++.+++.++++++||+++++.....+.|.
T Consensus 168 -----------~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~ 209 (219)
T 3dlc_A 168 -----------PDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGFWI 209 (219)
T ss_dssp -----------TTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEEEETTEEEE
T ss_pred -----------HHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEEecCCceEE
Confidence 001111112234568899999999999999998877776653
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-26 Score=167.56 Aligned_cols=206 Identities=16% Similarity=0.178 Sum_probs=143.6
Q ss_pred hHHHHhhhhcCcchhhHHHHHHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh
Q 027517 5 SLKLQLNDLLSFGQHRIWKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83 (222)
Q Consensus 5 ~~yd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (222)
..||.............+ +.+...+. ..++.+|||+|||+|..+..+++.. ++.+++++|+|+.+++.++++....
T Consensus 15 ~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~- 91 (234)
T 3dtn_A 15 GKYDEQRRKFIPCFDDFY-GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGN- 91 (234)
T ss_dssp HHHHHHHHHHCTTHHHHH-HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSC-
T ss_pred HHHHHhHHHhCcCHHHHH-HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccC-
Confidence 456665555444444444 44445444 4567899999999999999999985 6779999999999999999887433
Q ss_pred hhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHH--HHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhh
Q 027517 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKR--KALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMID 161 (222)
Q Consensus 84 ~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~ 161 (222)
.++.+.++|+.+++++ ++||+|++..+++|+++.. .++++++++|||||.+++.+...+..............
T Consensus 92 ----~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 166 (234)
T 3dtn_A 92 ----LKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWR 166 (234)
T ss_dssp ----TTEEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHH
T ss_pred ----CCEEEEeCchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHH
Confidence 3899999999998776 7899999999999998655 59999999999999999999887665443222111111
Q ss_pred cccccccccCChhHHHHH-hHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeee
Q 027517 162 NVVVPVASGYGLAEEYQY-LKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 221 (222)
..... ........... ......+.++.+++.++|+++||+++++...... ++.+.+.
T Consensus 167 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~-~~~~~~~ 224 (234)
T 3dtn_A 167 QYVEN--SGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQ-FAVMFGR 224 (234)
T ss_dssp HHHHT--SSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETT-EEEEEEE
T ss_pred HHHHh--cCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeeeecc-eeEEEEE
Confidence 10000 11111110000 1113446789999999999999999998755443 4444443
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-25 Score=161.58 Aligned_cols=166 Identities=24% Similarity=0.318 Sum_probs=136.9
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+++.+...++.+|||+|||+|.++..+++..++..+++++|+++.+++.++++....+. +++.+.+.|+.+++++
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~~ 103 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL---KNVEVLKSEENKIPLP 103 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC---TTEEEEECBTTBCSSC
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEecccccCCCC
Confidence 3456666778888999999999999999999865667999999999999999998765443 4799999999998887
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+++||+|+++.++++++++..+++++.++|+|||.+++.++......... .
T Consensus 104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------------------~ 154 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------------------P 154 (219)
T ss_dssp SSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------------------C
T ss_pred CCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------------------c
Confidence 78899999999999999999999999999999999999887765431110 1
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
....++.+++.++++++||++++........+ .++++|
T Consensus 155 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~-~~~~~k 192 (219)
T 3dh0_A 155 PEEVYSEWEVGLILEDAGIRVGRVVEVGKYCF-GVYAMI 192 (219)
T ss_dssp GGGSCCHHHHHHHHHHTTCEEEEEEEETTTEE-EEEEEC
T ss_pred hhcccCHHHHHHHHHHCCCEEEEEEeeCCceE-EEEEEe
Confidence 12457899999999999999999887776544 444443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=163.68 Aligned_cols=165 Identities=22% Similarity=0.319 Sum_probs=128.4
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+++.+...++.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++....+. +++.+.++|+.+++++
T Consensus 27 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 27 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGH---QQVEYVQGDAEQMPFT 100 (260)
T ss_dssp HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCC-CCCSC
T ss_pred HHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCC---CceEEEEecHHhCCCC
Confidence 345566667788899999999999999998773 4999999999999999988754332 4799999999998888
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+++||+|+++.+++|++++..++++++++|||||++++.+...+..+....+...... .....
T Consensus 101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 163 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEK-----------------ERDYS 163 (260)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHH-----------------HHCTT
T ss_pred CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHH-----------------hcCcc
Confidence 8899999999999999999999999999999999999988766554332222111100 00011
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
..+.++.+++.++++++||+++......
T Consensus 164 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 191 (260)
T 1vl5_A 164 HHRAWKKSDWLKMLEEAGFELEELHCFH 191 (260)
T ss_dssp CCCCCBHHHHHHHHHHHTCEEEEEEEEE
T ss_pred ccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence 2346789999999999999988776553
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=162.81 Aligned_cols=166 Identities=19% Similarity=0.102 Sum_probs=130.0
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
......+...+...++.+|||+|||+|..+..+++.+ +.+++++|+|+.+++.++++....+.. .++.+.++|+.+
T Consensus 22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~v~~~~~d~~~ 97 (256)
T 1nkv_A 22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVS--ERVHFIHNDAAG 97 (256)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCCTT
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCC--cceEEEECChHh
Confidence 3444566777778889999999999999999999885 568999999999999999887654322 479999999998
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
+++ +++||+|++..+++|++++..++++++++|||||++++.+......+........+.
T Consensus 98 ~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~------------------- 157 (256)
T 1nkv_A 98 YVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACG------------------- 157 (256)
T ss_dssp CCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTT-------------------
T ss_pred CCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHh-------------------
Confidence 876 678999999999999999999999999999999999998765433222111111100
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
......+++.+++.++++++||++++....
T Consensus 158 -~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 158 -VSSTSDFLTLPGLVGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp -CSCGGGSCCHHHHHHHHHTTTBCCCEEEEC
T ss_pred -cccccccCCHHHHHHHHHHCCCeeEEEEeC
Confidence 011235679999999999999999876543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=161.04 Aligned_cols=161 Identities=20% Similarity=0.318 Sum_probs=130.8
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+++.+...++.+|||+|||+|..+..+++.+ +.+++++|+|+.+++.++++.... +++.+.+.|+.+++++
T Consensus 45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~ 117 (266)
T 3ujc_A 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN-----NKIIFEANDILTKEFP 117 (266)
T ss_dssp HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC-----TTEEEEECCTTTCCCC
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEECccccCCCC
Confidence 455666677788899999999999999999886 569999999999999999886543 4899999999998887
Q ss_pred CCceeEEEEcccccCc--ccHHHHHHHHhcccCCCcEEEEEecCCCCC-chhhHHHHHHhhcccccccccCChhHHHHHh
Q 027517 104 DCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQ-PFTTAIQEWMIDNVVVPVASGYGLAEEYQYL 180 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (222)
+++||+|++..+++|+ +++..++++++++|||||.+++.++..... .....+... .
T Consensus 118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~---------------------~ 176 (266)
T 3ujc_A 118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEY---------------------V 176 (266)
T ss_dssp TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHH---------------------H
T ss_pred CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHH---------------------H
Confidence 8899999999999999 889999999999999999999998765541 111111111 1
Q ss_pred HHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 181 KSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
.......++.+++.++++++||++++......
T Consensus 177 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 208 (266)
T 3ujc_A 177 KQRKYTLITVEEYADILTACNFKNVVSKDLSD 208 (266)
T ss_dssp HHHTCCCCCHHHHHHHHHHTTCEEEEEEECHH
T ss_pred hcCCCCCCCHHHHHHHHHHcCCeEEEEEeCCH
Confidence 11223467999999999999999998876653
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=162.27 Aligned_cols=164 Identities=20% Similarity=0.281 Sum_probs=128.7
Q ss_pred HHHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 24 RMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 24 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
..++..+. ..++.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++....+.. +++.+.+.|+.++++
T Consensus 35 ~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~ 110 (267)
T 3kkz_A 35 LKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQ--NRVTGIVGSMDDLPF 110 (267)
T ss_dssp HHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEECCTTSCCC
T ss_pred HHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCC--cCcEEEEcChhhCCC
Confidence 34444444 667889999999999999999987 4569999999999999999987654432 579999999999887
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
+.++||+|++..+++++ ++..+++++.++|||||.+++.++..............+. .
T Consensus 111 ~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~---------------------~ 168 (267)
T 3kkz_A 111 RNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWM---------------------D 168 (267)
T ss_dssp CTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHH---------------------H
T ss_pred CCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHH---------------------H
Confidence 77899999999999999 8899999999999999999998875332222222222111 1
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEeeecCC
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
....+.+.+++.++++++||++++....+..
T Consensus 169 ~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 199 (267)
T 3kkz_A 169 AYPEIDTIPNQVAKIHKAGYLPVATFILPEN 199 (267)
T ss_dssp HCTTCEEHHHHHHHHHHTTEEEEEEEECCGG
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEEECCHh
Confidence 1124568899999999999999998877643
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=157.39 Aligned_cols=162 Identities=20% Similarity=0.189 Sum_probs=123.3
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+++.+...++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++.. .++.+.++|+.+++.+
T Consensus 36 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~~- 104 (220)
T 3hnr_A 36 DILEDVVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEVP- 104 (220)
T ss_dssp HHHHHHHHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCCCC-
T ss_pred HHHHHhhccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcCCC-
Confidence 3444444557889999999999999999876 4699999999999999998863 3799999999998877
Q ss_pred CceeEEEEcccccCcccHHH--HHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH-
Q 027517 105 CFFDAITMGYGLRNVVDKRK--ALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK- 181 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~--~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 181 (222)
++||+|++..+++|+++... ++++++++|||||.+++.++................... +....
T Consensus 105 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 171 (220)
T 3hnr_A 105 TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRG-------------FHQLAN 171 (220)
T ss_dssp SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTT-------------CHHHHH
T ss_pred CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCC-------------Cccchh
Confidence 88999999999999988766 999999999999999999876544333222222221100 11111
Q ss_pred -HhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 182 -SSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 182 -~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
.....+++.+++.++++++||+++.....
T Consensus 172 ~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 172 DLQTEYYTRIPVMQTIFENNGFHVTFTRLN 201 (220)
T ss_dssp HHHHSCCCBHHHHHHHHHHTTEEEEEEECS
T ss_pred hcchhhcCCHHHHHHHHHHCCCEEEEeecc
Confidence 11224568999999999999988776643
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-24 Score=162.52 Aligned_cols=164 Identities=21% Similarity=0.175 Sum_probs=130.2
Q ss_pred HHHHHhh----CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 24 RMAVSWS----GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 24 ~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+...+ ...++.+|||+|||+|..+..+++.+ +.+++++|+++.+++.++++....+.. +++.+.++|+.+
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~ 143 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLA--DNITVKYGSFLE 143 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCT--TTEEEEECCTTS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCC--cceEEEEcCccc
Confidence 4555566 66788899999999999999999886 459999999999999999887554322 579999999999
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
+++++++||+|++..+++|++++..++++++++|||||.+++.++.............++..
T Consensus 144 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~------------------ 205 (297)
T 2o57_A 144 IPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDR------------------ 205 (297)
T ss_dssp CSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHH------------------
T ss_pred CCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHH------------------
Confidence 88888899999999999999999999999999999999999988765433222222221110
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.......+.+++.++++++||++++.....
T Consensus 206 --~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 206 --IKLHDMGSLGLYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp --HTCSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred --hcCCCCCCHHHHHHHHHHCCCeEEEEEECc
Confidence 011135688999999999999999887654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-24 Score=158.05 Aligned_cols=164 Identities=24% Similarity=0.318 Sum_probs=130.0
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..++..+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....+. +++.+.++|+.+++++
T Consensus 11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~ 84 (239)
T 1xxl_A 11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGV---ENVRFQQGTAESLPFP 84 (239)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTC---CSEEEEECBTTBCCSC
T ss_pred chHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC---CCeEEEecccccCCCC
Confidence 445667778889999999999999999998763 4899999999999999988754432 4799999999998887
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+++||+|++..+++|++++..++++++++|+|||.+++.+...+..+....+..... ......
T Consensus 85 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 147 (239)
T 1xxl_A 85 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLN-----------------RLRDPS 147 (239)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHH-----------------HHHCTT
T ss_pred CCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHH-----------------Hhcccc
Confidence 789999999999999999999999999999999999998877655433222211110 000011
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
+.+.++.+++.++++++||++++....
T Consensus 148 ~~~~~~~~~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 148 HVRESSLSEWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp CCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCCCCHHHHHHHHHHCCCcEEEEEee
Confidence 234678999999999999998887765
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=158.69 Aligned_cols=170 Identities=25% Similarity=0.367 Sum_probs=131.8
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
....+.+.+...++.+|||+|||+|..+..+++.. +.+++++|+|+.+++.++++....+.. .++.+..+|+.+++
T Consensus 49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~ 124 (273)
T 3bus_A 49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLA--NRVTFSYADAMDLP 124 (273)
T ss_dssp HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEECCTTSCC
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCC--cceEEEECccccCC
Confidence 33456666677788999999999999999999874 569999999999999999887544322 47999999999988
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
+++++||+|++..+++|++++..++++++++|||||++++.++......... ...... .+. ..
T Consensus 125 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~~~~---------------~~~-~~ 187 (273)
T 3bus_A 125 FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGA-KKEAVD---------------AFR-AG 187 (273)
T ss_dssp SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHH-HHHHHH---------------HHH-HH
T ss_pred CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChh-HHHHHH---------------HHH-hh
Confidence 8778999999999999999999999999999999999999887654321111 101100 000 00
Q ss_pred HhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 182 SSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
......++.+++.++++++||++++......
T Consensus 188 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 218 (273)
T 3bus_A 188 GGVLSLGGIDEYESDVRQAELVVTSTVDISA 218 (273)
T ss_dssp HTCCCCCCHHHHHHHHHHTTCEEEEEEECHH
T ss_pred cCccCCCCHHHHHHHHHHcCCeEEEEEECcH
Confidence 1123567999999999999999998876653
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-24 Score=158.04 Aligned_cols=166 Identities=20% Similarity=0.306 Sum_probs=129.5
Q ss_pred HHHHHhh-CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 24 RMAVSWS-GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 24 ~~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
..++..+ ...++.+|||+|||+|..+..+++.. + .+++++|+++.+++.++++....+.. .++.+.++|+.++++
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~ 110 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYV-K-GQITGIDLFPDFIEIFNENAVKANCA--DRVKGITGSMDNLPF 110 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHC-C-SEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEECCTTSCSS
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHcCCC--CceEEEECChhhCCC
Confidence 3444444 56678899999999999999999985 3 39999999999999999987654432 469999999998888
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
++++||+|++..+++|+ ++..+++++.++|+|||++++.++..............+. .
T Consensus 111 ~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~---------------------~ 168 (257)
T 3f4k_A 111 QNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWM---------------------D 168 (257)
T ss_dssp CTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHH---------------------H
T ss_pred CCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHH---------------------H
Confidence 77899999999999999 7899999999999999999998865322222222211111 1
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEeeecCCee
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 215 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 215 (222)
....+.+.+++.++++++||++++....+...|
T Consensus 169 ~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~w 201 (257)
T 3f4k_A 169 AYPEISVIPTCIDKMERAGYTPTAHFILPENCW 201 (257)
T ss_dssp HCTTCCBHHHHHHHHHHTTEEEEEEEECCGGGT
T ss_pred hCCCCCCHHHHHHHHHHCCCeEEEEEECChhhH
Confidence 112356899999999999999999887765443
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=165.92 Aligned_cols=179 Identities=16% Similarity=0.181 Sum_probs=132.9
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
...++.+|||+|||+|..+..++....++.+++++|+++.+++.++++....+.. .++.++++|+.+++++ ++||+|
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~-~~fD~v 191 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA--GQITLHRQDAWKLDTR-EGYDLL 191 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG--GGEEEEECCGGGCCCC-SCEEEE
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC--CceEEEECchhcCCcc-CCeEEE
Confidence 3467889999999999999988533346779999999999999999987654332 4599999999998877 889999
Q ss_pred EEcccccCcccHHH---HHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhH----H--H-HHh
Q 027517 111 TMGYGLRNVVDKRK---ALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAE----E--Y-QYL 180 (222)
Q Consensus 111 ~~~~~l~~~~~~~~---~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~-~~~ 180 (222)
+++.+++|++++.. ++++++++|||||.+++.++..+...... ..|... ...... . + ...
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~w~~~--------~~~~~~~~~~~~~~~~~~ 261 (305)
T 3ocj_A 192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPD--SPWDMQ--------AIDPHDLQLQQLVFTRLI 261 (305)
T ss_dssp ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTT--CCCCGG--------GSCHHHHHHHHHHHHHTT
T ss_pred EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCccccc--ccceee--------ccccchhhhhhhHHHHHH
Confidence 99999999987655 79999999999999999887654322110 000000 000000 0 0 000
Q ss_pred HHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 181 KSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
......+++.+++.++++++||+++++.....+.+..++|+|
T Consensus 262 ~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 262 QPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp CCSCCCCCCHHHHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred hhhhhccCCHHHHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 111224579999999999999999999988888888888886
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=155.38 Aligned_cols=150 Identities=25% Similarity=0.354 Sum_probs=122.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
+++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++.. ..++.++++|+.++++++++||+|++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v~~ 122 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERGE------GPDLSFIKGDLSSLPFENEQFEAIMA 122 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTTC------BTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhcc------cCCceEEEcchhcCCCCCCCccEEEE
Confidence 46789999999999999999876 4589999999999999998752 15899999999998887889999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
..+++|++++..+++++.++|+|||.+++.++..............+. .......+++++
T Consensus 123 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~ 182 (242)
T 3l8d_A 123 INSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYG--------------------KDVVCNTMMPWE 182 (242)
T ss_dssp ESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGT--------------------CCCSSCCCCHHH
T ss_pred cChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhcc--------------------ccccccCCCHHH
Confidence 999999999999999999999999999999876654333222211111 001224578999
Q ss_pred HHHHHHHcCCeEEEEeeec
Q 027517 193 LEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~~ 211 (222)
+.++++++||++++.....
T Consensus 183 ~~~~l~~~Gf~~~~~~~~~ 201 (242)
T 3l8d_A 183 FEQLVKEQGFKVVDGIGVY 201 (242)
T ss_dssp HHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEeeccc
Confidence 9999999999999877553
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-23 Score=161.21 Aligned_cols=174 Identities=15% Similarity=0.092 Sum_probs=134.5
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+.+.....+..+|||+|||+|.++..+++.+ ++.+++++|+ +.+++.++++....+. .+++++..+|+.+ +.+.
T Consensus 193 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l--~~~v~~~~~d~~~-~~p~ 267 (369)
T 3gwz_A 193 QVAAAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGL--ADRCEILPGDFFE-TIPD 267 (369)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTTT-CCCS
T ss_pred HHHHhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCc--CCceEEeccCCCC-CCCC
Confidence 44455566678899999999999999999985 6779999999 9999999988754332 2589999999983 4454
Q ss_pred CceeEEEEcccccCcccHH--HHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 105 CFFDAITMGYGLRNVVDKR--KALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~--~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
.||+|++.+++|++++.. ++++++++.|+|||++++.+...+...... ..+.. ......
T Consensus 268 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~--~~~~d----------------~~~~~~ 328 (369)
T 3gwz_A 268 -GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS--TLFVD----------------LLLLVL 328 (369)
T ss_dssp -SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH--HHHHH----------------HHHHHH
T ss_pred -CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc--hhHhh----------------HHHHhh
Confidence 799999999999998764 799999999999999999998766543221 11111 111111
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
.....++.++|.++++++||+++++.....+...++.|+|
T Consensus 329 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 329 VGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred cCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 2235679999999999999999999876666677777764
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=159.39 Aligned_cols=173 Identities=22% Similarity=0.337 Sum_probs=129.2
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+.+...+.......++.+|||+|||+|.++..+++. .++.+++++|+++.+++.++++....+. +++.+...|+.+
T Consensus 23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~ 98 (276)
T 3mgg_A 23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKARENTEKNGI---KNVKFLQANIFS 98 (276)
T ss_dssp CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGG
T ss_pred HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEccccc
Confidence 344444444555678889999999999999999988 4677999999999999999998765433 479999999999
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCch---hhHHHHHHhhcccccccccCChhHH
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF---TTAIQEWMIDNVVVPVASGYGLAEE 176 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (222)
+++++++||+|++..+++|++++..++++++++|||||.+++.+........ ......++. ..
T Consensus 99 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 164 (276)
T 3mgg_A 99 LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWN--------------CL 164 (276)
T ss_dssp CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHH--------------HH
T ss_pred CCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHH--------------HH
Confidence 8887789999999999999999999999999999999999998765322110 011111110 00
Q ss_pred HHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 177 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
...........++..++.++|+++||++++....
T Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~~~ 198 (276)
T 3mgg_A 165 IRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPR 198 (276)
T ss_dssp HHHHHHTTCCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHhcCCCcchHHHHHHHHHHCCCCeEEEeeE
Confidence 0011111123457789999999999999887754
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-24 Score=154.29 Aligned_cols=142 Identities=15% Similarity=0.110 Sum_probs=119.0
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
+.+|||+|||+|.++..+++. +.+++++|+++.+++.++++. +++.++++|+.++++++++||+|++..
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~ 110 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH--------PSVTFHHGTITDLSDSPKRWAGLLAWY 110 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC--------TTSEEECCCGGGGGGSCCCEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC--------CCCeEEeCcccccccCCCCeEEEEehh
Confidence 779999999999999999876 459999999999999999874 589999999999887778999999999
Q ss_pred cccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 115 GLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 115 ~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
+++|++ ++..++++++++|+|||.+++.++......... .. ......++.++
T Consensus 111 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~---------------~~-----------~~~~~~~~~~~ 164 (203)
T 3h2b_A 111 SLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMY---------------HP-----------VATAYRWPLPE 164 (203)
T ss_dssp SSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEEC---------------CS-----------SSCEEECCHHH
T ss_pred hHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhh---------------ch-----------hhhhccCCHHH
Confidence 999996 889999999999999999999887765411100 00 00124678999
Q ss_pred HHHHHHHcCCeEEEEeeecCC
Q 027517 193 LEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
+.++++++||++++.......
T Consensus 165 ~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 165 LAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHCCCcEEEEEecCCC
Confidence 999999999999998887763
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=159.34 Aligned_cols=162 Identities=16% Similarity=0.166 Sum_probs=127.8
Q ss_pred HHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 25 MAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 25 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
.+++.+. ..++.+|||+|||+|.++..+++.. +.+|+++|+++.+++.++++....+.. .++.+.++|+.+++++
T Consensus 107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~ 182 (312)
T 3vc1_A 107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRID--DHVRSRVCNMLDTPFD 182 (312)
T ss_dssp HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEECCTTSCCCC
T ss_pred HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCC--CceEEEECChhcCCCC
Confidence 3555555 6788899999999999999999875 468999999999999999987654432 4799999999998887
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCc-hhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP-FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
+++||+|++..+++|+ ++..+++++.++|||||++++.++...... .......+.. ..
T Consensus 183 ~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~--------------------~~ 241 (312)
T 3vc1_A 183 KGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQIN--------------------AH 241 (312)
T ss_dssp TTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHH--------------------HH
T ss_pred CCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHH--------------------hh
Confidence 7899999999999999 589999999999999999999886654322 1111111111 00
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.....++.+++.++++++||++++...+.
T Consensus 242 ~~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 242 FECNIHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp HTCCCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred hcCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 11246789999999999999999988764
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-23 Score=149.91 Aligned_cols=170 Identities=19% Similarity=0.226 Sum_probs=119.9
Q ss_pred HHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 26 AVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 26 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
+...+. ..++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++. + ..++.+.++|+.++ .+.
T Consensus 37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~----~---~~~~~~~~~d~~~~-~~~ 105 (218)
T 3ou2_A 37 ALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGRH----G---LDNVEFRQQDLFDW-TPD 105 (218)
T ss_dssp HHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGGG----C---CTTEEEEECCTTSC-CCS
T ss_pred HHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHhc----C---CCCeEEEecccccC-CCC
Confidence 344443 567789999999999999999987 45999999999999999882 1 15899999999887 667
Q ss_pred CceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 105 CFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
++||+|+++.+++|+++. ..++++++++|+|||.+++.++..+............... ..........+ .
T Consensus 106 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~ 177 (218)
T 3ou2_A 106 RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVA----VRRTLQDGRSF----R 177 (218)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CE----EEEECTTSCEE----E
T ss_pred CceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccc----eeeecCCcchh----h
Confidence 889999999999999875 8999999999999999999998874433222111111100 00000000000 0
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEeeecCCe
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHYELSGGL 214 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 214 (222)
....+++++++.++++++||++..........
T Consensus 178 ~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~ 209 (218)
T 3ou2_A 178 IVKVFRSPAELTERLTALGWSCSVDEVHPGFL 209 (218)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEEEETTEE
T ss_pred HhhcCCCHHHHHHHHHHCCCEEEeeeccccce
Confidence 12346799999999999999966655444333
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=153.44 Aligned_cols=169 Identities=15% Similarity=0.235 Sum_probs=124.8
Q ss_pred hHHHHhhhhcCcchhhHHHHHHHHhh-CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh
Q 027517 5 SLKLQLNDLLSFGQHRIWKRMAVSWS-GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83 (222)
Q Consensus 5 ~~yd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (222)
..|..+...+........ ..+...+ ...++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++
T Consensus 12 ~~y~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~----- 82 (240)
T 3dli_A 12 DYYFLFEEKFRGSRELVK-ARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK----- 82 (240)
T ss_dssp CHHHHHHHHHTCCHHHHH-HHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT-----
T ss_pred HHHHHHHHHhCCCHHHHH-HHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh-----
Confidence 455555554433333332 3333333 3456789999999999999998876 45899999999999998764
Q ss_pred hhcCCCeeEEeCCCCCc--CCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHH
Q 027517 84 KACYKNIEWVEGDALDL--PFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWM 159 (222)
Q Consensus 84 ~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~ 159 (222)
+.+...|+.+. ++++++||+|++..+++|++ +...++++++++|||||.+++..+..... .....++
T Consensus 83 ------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~~~ 153 (240)
T 3dli_A 83 ------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---YSLINFY 153 (240)
T ss_dssp ------SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---HHHHHHT
T ss_pred ------cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---HHHHHHh
Confidence 57888888774 66778999999999999998 45999999999999999999987764321 1111111
Q ss_pred hhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 160 IDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
....+...++.+++.++++++||++++...+.
T Consensus 154 --------------------~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 154 --------------------IDPTHKKPVHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp --------------------TSTTCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred --------------------cCccccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence 01122356789999999999999999887665
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=155.66 Aligned_cols=159 Identities=17% Similarity=0.225 Sum_probs=124.9
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+.+.+.+.+...++.+|||+|||+|.++..+++ ++.+++|+|+|+.+++.++++. ++.+.+.|+.+
T Consensus 20 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~d~~~ 87 (261)
T 3ege_A 20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP---------QVEWFTGYAEN 87 (261)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT---------TEEEECCCTTS
T ss_pred HHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc---------CCEEEECchhh
Confidence 45667777888778889999999999999999986 4679999999999999888763 89999999999
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
+++++++||+|++..+++|++++..++++++++|| ||++++.++....... .|.. . .. ...
T Consensus 88 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~-----~~~~-~----------~~--~~~ 148 (261)
T 3ege_A 88 LALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQR-----IWLY-D----------YF--PFL 148 (261)
T ss_dssp CCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCC-----CGGG-G----------TC--HHH
T ss_pred CCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHH-----HHHH-H----------HH--HHH
Confidence 88888899999999999999999999999999999 9999888876422110 0000 0 00 001
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
.......+.+.+++. +++++||++++...+
T Consensus 149 ~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 149 WEDALRFLPLDEQIN-LLQENTKRRVEAIPF 178 (261)
T ss_dssp HHHHHTSCCHHHHHH-HHHHHHCSEEEEEEC
T ss_pred hhhhhhhCCCHHHHH-HHHHcCCCceeEEEe
Confidence 112234566788899 999999998887665
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-23 Score=154.24 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=98.6
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+...+...++.+|||+|||+|..+..+++.. . .+++++|+++.+++.++++.. ..++.+.++|+.++++++
T Consensus 35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~ 106 (253)
T 3g5l_A 35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-A-KKVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAIEP 106 (253)
T ss_dssp HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCCCCT
T ss_pred HHHHhhhccCCCEEEEECCCCCHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCCCCC
Confidence 44555566678899999999999999998872 2 289999999999999998864 158999999999988877
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++||+|++..+++|++++..++++++++|||||.+++...+
T Consensus 107 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 107 DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 89999999999999999999999999999999999987554
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=151.96 Aligned_cols=163 Identities=16% Similarity=0.110 Sum_probs=123.2
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..++..+...++.+|||+|||+|..+..+++.+ ++.+++++|+|+.+++.++++. +++.+.+.|+.+++ +
T Consensus 23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~-~ 92 (259)
T 2p35_A 23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL--------PNTNFGKADLATWK-P 92 (259)
T ss_dssp HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS--------TTSEEEECCTTTCC-C
T ss_pred HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--------CCcEEEECChhhcC-c
Confidence 455666666778899999999999999999886 5679999999999999998873 58999999999877 6
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+++||+|+++.+++|++++..++++++++|+|||.+++.++.....+....+............ .......
T Consensus 93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 163 (259)
T 2p35_A 93 AQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDA---------FSGGGLR 163 (259)
T ss_dssp SSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGG---------C------
T ss_pred cCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHH---------hcccccc
Confidence 6789999999999999999999999999999999999988765443332222222211000000 0000012
Q ss_pred HhhcCCHHHHHHHHHHcCCeEE
Q 027517 184 IREFLTGKDLEKLALEIGFSRA 205 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~ 205 (222)
...+++.+++.++|+++||++.
T Consensus 164 ~~~~~~~~~~~~~l~~aGf~v~ 185 (259)
T 2p35_A 164 RKPLPPPSDYFNALSPKSSRVD 185 (259)
T ss_dssp -CCCCCHHHHHHHHGGGEEEEE
T ss_pred ccCCCCHHHHHHHHHhcCCceE
Confidence 3457899999999999999753
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-22 Score=154.93 Aligned_cols=174 Identities=16% Similarity=0.157 Sum_probs=129.5
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+.+.+...+ .+|||+|||+|..+..+++.+ ++.+++++|+ +.+++.++++....+.. .++++..+|+.+ +.+
T Consensus 158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~-~~~ 231 (334)
T 2ip2_A 158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAG--ERVSLVGGDMLQ-EVP 231 (334)
T ss_dssp HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHT--TSEEEEESCTTT-CCC
T ss_pred HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCC--CcEEEecCCCCC-CCC
Confidence 34445555556 899999999999999999985 6679999999 99999999887544322 589999999987 454
Q ss_pred CCceeEEEEcccccCcccHH--HHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 104 DCFFDAITMGYGLRNVVDKR--KALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
++||+|++..++|++++.. .+++++++.|+|||++++.+...+..... ....... .....
T Consensus 232 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~-~~~~~~~----------------~~~~~ 293 (334)
T 2ip2_A 232 -SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS-PMSVLWD----------------VHLFM 293 (334)
T ss_dssp -SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC-HHHHHHH----------------HHHHH
T ss_pred -CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-chhHHhh----------------hHhHh
Confidence 5799999999999997654 89999999999999999998765432211 1111110 00111
Q ss_pred HhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 182 SSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
......++.++|.++++++||+++++..... ...++.++|
T Consensus 294 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~~~i~~~~ 333 (334)
T 2ip2_A 294 ACAGRHRTTEEVVDLLGRGGFAVERIVDLPM-ETRMIVAAR 333 (334)
T ss_dssp HHSCCCCBHHHHHHHHHHTTEEEEEEEEETT-TEEEEEEEE
T ss_pred hCCCcCCCHHHHHHHHHHCCCceeEEEECCC-CCEEEEEEe
Confidence 1112456899999999999999999887654 456777764
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-23 Score=152.68 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=119.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. .++.+.++|+.++ .++++||+|+
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~-------~~v~~~~~d~~~~-~~~~~fD~v~ 108 (250)
T 2p7i_A 40 FFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK-------DGITYIHSRFEDA-QLPRRYDNIV 108 (250)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGC-CCSSCEEEEE
T ss_pred hcCCCcEEEECCCCCHHHHHHHHh---CCcEEEEeCCHHHHHHHHHhhh-------CCeEEEEccHHHc-CcCCcccEEE
Confidence 356779999999999999999875 3489999999999999998862 2789999999887 4567899999
Q ss_pred EcccccCcccHHHHHHHHh-cccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCH
Q 027517 112 MGYGLRNVVDKRKALEESF-RVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~-~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (222)
+.++++|++++..++++++ ++|||||++++.++........ . .... ..... ...... ......+.+.++.
T Consensus 109 ~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~--~-~~~~-~~~~~---~~~~~~--~~~~~~~~~~~~~ 179 (250)
T 2p7i_A 109 LTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQ--I-AVKM-GIISH---NSAVTE--AEFAHGHRCTYAL 179 (250)
T ss_dssp EESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHH--H-HHHT-TSSSS---TTCCCH--HHHHTTCCCCCCH
T ss_pred EhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHH--H-HHHc-Ccccc---chhccc--ccccccccccCCH
Confidence 9999999999999999999 9999999999988765432111 1 0000 00000 000000 0011223457899
Q ss_pred HHHHHHHHHcCCeEEEEeeec
Q 027517 191 KDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 191 ~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
+++.++++++||++++.....
T Consensus 180 ~~~~~~l~~~Gf~~~~~~~~~ 200 (250)
T 2p7i_A 180 DTLERDASRAGLQVTYRSGIF 200 (250)
T ss_dssp HHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEeeeE
Confidence 999999999999999876543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.5e-23 Score=158.08 Aligned_cols=164 Identities=18% Similarity=0.083 Sum_probs=126.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
...+..+|||+|||+|..+..+++.+ ++.+++++|+ +.+++.++++....+.. +++++..+|+.+ +.+. +||+|
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~-~~p~-~~D~v 239 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLS--GRAQVVVGSFFD-PLPA-GAGGY 239 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT--TTEEEEECCTTS-CCCC-SCSEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcC--cCeEEecCCCCC-CCCC-CCcEE
Confidence 34456799999999999999999985 6779999999 99999999887543322 589999999973 4444 79999
Q ss_pred EEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcC
Q 027517 111 TMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188 (222)
Q Consensus 111 ~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (222)
++.+++|++++. .++++++++.|+|||++++.+...+.. ....... ...+.....+.+
T Consensus 240 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~d-------------------~~~~~~~~~~~~ 299 (332)
T 3i53_A 240 VLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HAGTGMD-------------------LRMLTYFGGKER 299 (332)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----CCHHHH-------------------HHHHHHHSCCCC
T ss_pred EEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-CccHHHH-------------------HHHHhhCCCCCC
Confidence 999999999874 889999999999999999998876553 1100000 111111223567
Q ss_pred CHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 189 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 189 ~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
+.++|.++++++||+++++..... ..++.+++
T Consensus 300 t~~e~~~ll~~aGf~~~~~~~~~~--~~vie~r~ 331 (332)
T 3i53_A 300 SLAELGELAAQAGLAVRAAHPISY--VSIVEMTA 331 (332)
T ss_dssp CHHHHHHHHHHTTEEEEEEEECSS--SEEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEEECCC--cEEEEEee
Confidence 999999999999999999987765 66777664
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=156.06 Aligned_cols=174 Identities=17% Similarity=0.165 Sum_probs=131.0
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+++....++..+|+|+|||+|..+..+++.+ |+.+++.+|. |.+++.++++..... .+++++..+|+.+.+.+
T Consensus 170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~---~~rv~~~~gD~~~~~~~- 243 (353)
T 4a6d_A 170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQE---EEQIDFQEGDFFKDPLP- 243 (353)
T ss_dssp HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSCCC-
T ss_pred HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcc---cCceeeecCccccCCCC-
Confidence 34444555677899999999999999999995 7789999997 889999988765332 26899999999875543
Q ss_pred CceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 105 CFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
.+|++++..++|++++. .++|+++++.|+|||+++|.+...++..........+. ..++..
T Consensus 244 -~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~d----------------l~ml~~ 306 (353)
T 4a6d_A 244 -EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYS----------------LNMLVQ 306 (353)
T ss_dssp -CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHH----------------HHHHHS
T ss_pred -CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHH----------------HHHHHh
Confidence 47999999999999765 67899999999999999999987654322222211111 111111
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
.....+|.+||+++++++||+++++.+. ++.+.+++|+|
T Consensus 307 ~~g~ert~~e~~~ll~~AGf~~v~v~~~-~~~~~~i~ArK 345 (353)
T 4a6d_A 307 TEGQERTPTHYHMLLSSAGFRDFQFKKT-GAIYDAILARK 345 (353)
T ss_dssp SSCCCCCHHHHHHHHHHHTCEEEEEECC-SSSCEEEEEEC
T ss_pred CCCcCCCHHHHHHHHHHCCCceEEEEEc-CCceEEEEEEe
Confidence 1124579999999999999999998865 45667899988
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-23 Score=145.70 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=122.6
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++. +++.+...| .+++++
T Consensus 9 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~--------~~v~~~~~d---~~~~~~ 74 (170)
T 3i9f_A 9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKF--------DSVITLSDP---KEIPDN 74 (170)
T ss_dssp THHHHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHC--------TTSEEESSG---GGSCTT
T ss_pred HHHhcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhC--------CCcEEEeCC---CCCCCC
Confidence 3344556778899999999999999999774 38999999999999999872 589999999 555677
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
+||+|++..+++|++++..+++++++.|+|||.+++.++......... ...
T Consensus 75 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------------------~~~ 125 (170)
T 3i9f_A 75 SVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------------------PLS 125 (170)
T ss_dssp CEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------------------CGG
T ss_pred ceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------------------hHh
Confidence 899999999999999999999999999999999999987765432111 112
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEee
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVA 220 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 220 (222)
..++.+++.++++ ||++++........+.++..
T Consensus 126 ~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 126 IRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLK 158 (170)
T ss_dssp GCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEE
T ss_pred hhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEe
Confidence 3578999999998 99999999888766655543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-22 Score=156.16 Aligned_cols=177 Identities=12% Similarity=0.146 Sum_probs=132.1
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+++.+...++.+|||+|||+|..+..+++.+ ++.+++++|+ +.+++.++++....+.. .++++..+|+.+.+++
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~ 255 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA--DRMRGIAVDIYKESYP 255 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCT--TTEEEEECCTTTSCCC
T ss_pred HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCC--CCEEEEeCccccCCCC
Confidence 345555666778899999999999999999985 6779999999 99999999887644321 4699999999887655
Q ss_pred CCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 104 DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
+ +|+|++..++|++++ ...++++++++|+|||++++.+...+.... .....++ .........
T Consensus 256 ~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~~~~--~~~~~~~~g----------- 319 (359)
T 1x19_A 256 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-PNFDYLS--HYILGAGMP----------- 319 (359)
T ss_dssp C--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTS-CCHHHHH--HHGGGGGSS-----------
T ss_pred C--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCC-chHHHHH--HHHHhcCCC-----------
Confidence 3 499999999999987 788999999999999999999877654311 1111111 110000000
Q ss_pred HhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 182 SSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
.....+++.++|.++++++||+++++.... ...+++++|
T Consensus 320 ~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~--~~~vi~a~k 358 (359)
T 1x19_A 320 FSVLGFKEQARYKEILESLGYKDVTMVRKY--DHLLVQAVK 358 (359)
T ss_dssp CCCCCCCCGGGHHHHHHHHTCEEEEEEEET--TEEEEEEEC
T ss_pred CcccCCCCHHHHHHHHHHCCCceEEEEecC--CceEEEEeC
Confidence 001134799999999999999999988876 466777776
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=150.10 Aligned_cols=177 Identities=19% Similarity=0.221 Sum_probs=123.1
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+...+...++.+|||+|||+|..+..+++. + ..+++++|+++.+++.++++... .++.+.+.|+.+++++
T Consensus 33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~ 104 (243)
T 3bkw_A 33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSEKMLARARAAGPD------TGITYERADLDKLHLP 104 (243)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHTSCS------SSEEEEECCGGGCCCC
T ss_pred HHHHHhccccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCHHHHHHHHHhccc------CCceEEEcChhhccCC
Confidence 34566666677889999999999999999876 2 22899999999999999987632 3789999999988777
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhc-c--cccccccCCh-hHHHHH
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDN-V--VVPVASGYGL-AEEYQY 179 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~-~~~~~~ 179 (222)
.++||+|++..+++|++++..++++++++|+|||.+++.+.+....... ...|.... . ..+....... .....+
T Consensus 105 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (243)
T 3bkw_A 105 QDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPA--RPGWAIDAEGRRTWPIDRYLVEGPRKTDW 182 (243)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCS--SCSCEECTTSCEEEEECCTTCCEEECTTH
T ss_pred CCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCc--CcceeecCCCceEEeecccccccceeeee
Confidence 7889999999999999999999999999999999999977542100000 00000000 0 0000000000 000001
Q ss_pred hH-HhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 180 LK-SSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 180 ~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
.. ......++.+++.++|+++||++++..+.
T Consensus 183 ~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 183 LAKGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp HHHSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccCceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 11 11123468999999999999999988765
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-22 Score=154.78 Aligned_cols=175 Identities=15% Similarity=0.222 Sum_probs=130.0
Q ss_pred HHHHhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 25 MAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 25 ~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
.+++.+.. .++.+|||+|||+|..+..+++.+ ++.+++++|++ .+++.++++....+.. .++++..+|+.+.+.
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~ 229 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVA--SRYHTIAGSAFEVDY 229 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCG--GGEEEEESCTTTSCC
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCC--cceEEEecccccCCC
Confidence 44445555 677899999999999999999985 66799999999 9999999887554322 479999999988666
Q ss_pred CCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHh
Q 027517 103 SDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYL 180 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (222)
+. .||+|++.+++|++++ ...+++++++.|+|||++++.+...+...........+. ....
T Consensus 230 ~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~----------------~~~~ 292 (335)
T 2r3s_A 230 GN-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFS----------------LVML 292 (335)
T ss_dssp CS-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHH----------------HHHH
T ss_pred CC-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHH----------------HHHH
Confidence 54 4999999999999954 579999999999999999999887654322111111111 0000
Q ss_pred H-HhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeee
Q 027517 181 K-SSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 181 ~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 221 (222)
. ......++.++|.++++++||+++++....+.. .+++++
T Consensus 293 ~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~-~~i~~~ 333 (335)
T 2r3s_A 293 ATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQ-QQVIVA 333 (335)
T ss_dssp HHSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSS-SEEEEE
T ss_pred eeCCCCCcCCHHHHHHHHHHCCCCeeeEEECCCCc-eeEEEe
Confidence 0 012356799999999999999999988776543 444443
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=153.88 Aligned_cols=165 Identities=14% Similarity=0.173 Sum_probs=127.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+++.+...++.+|||+|||+|..+..+++.++ .+|+++|+|+.+++.++++....+.. .++.+..+|+.++
T Consensus 62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~--- 134 (302)
T 3hem_A 62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSP--RRKEVRIQGWEEF--- 134 (302)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCS--SCEEEEECCGGGC---
T ss_pred HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEECCHHHc---
Confidence 3455666778889999999999999999998863 68999999999999999987654322 4799999999876
Q ss_pred CCceeEEEEcccccCcccH---------HHHHHHHhcccCCCcEEEEEecCCCCCchhhHH-----------HHHHhhcc
Q 027517 104 DCFFDAITMGYGLRNVVDK---------RKALEESFRVLKPGSRISVLDFNKSTQPFTTAI-----------QEWMIDNV 163 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~---------~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~-----------~~~~~~~~ 163 (222)
+++||+|++..+++|++++ ..+++++.++|||||.+++.++..+........ ..|+...
T Consensus 135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 213 (302)
T 3hem_A 135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE- 213 (302)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH-
T ss_pred CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHh-
Confidence 5789999999999999654 799999999999999999998876543221110 0111100
Q ss_pred cccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCC
Q 027517 164 VVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
. .......+.+++.++++++||++++.......
T Consensus 214 ----------------~-~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~ 246 (302)
T 3hem_A 214 ----------------I-FPGGRLPRISQVDYYSSNAGWKVERYHRIGAN 246 (302)
T ss_dssp ----------------T-CTTCCCCCHHHHHHHHHHHTCEEEEEEECGGG
T ss_pred ----------------c-CCCCCCCCHHHHHHHHHhCCcEEEEEEeCchh
Confidence 0 01123568999999999999999998776544
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=156.81 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=120.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~ 112 (222)
++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+.. +++.++++|+.+++ +++++||+|++
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~v~~ 142 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVS--DNMQFIHCAAQDVASHLETPVDLILF 142 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCG--GGEEEEESCGGGTGGGCSSCEEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCC--cceEEEEcCHHHhhhhcCCCceEEEE
Confidence 3679999999999999999876 569999999999999999987654322 47899999999876 56788999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
..+++|++++..++++++++|||||.+++.++..............+. ......... ..........+++++
T Consensus 143 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~ 214 (285)
T 4htf_A 143 HAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFD-YVQAGMPKK-------KKRTLSPDYPRDPTQ 214 (285)
T ss_dssp ESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHH-HHHTTCCCC-----------CCCSCCBCHHH
T ss_pred CchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHH-HHhhhcccc-------ccccCCCCCCCCHHH
Confidence 999999999999999999999999999998776432111111100000 000000000 000011235679999
Q ss_pred HHHHHHHcCCeEEEEeeec
Q 027517 193 LEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~~ 211 (222)
+.++++++||++++.....
T Consensus 215 l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 215 VYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp HHHHHHHTTCEEEEEEEES
T ss_pred HHHHHHHCCCceeeeeeEE
Confidence 9999999999999887664
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-23 Score=152.51 Aligned_cols=191 Identities=16% Similarity=0.109 Sum_probs=129.9
Q ss_pred hhhHHHHHHHHhhCCC--CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC
Q 027517 18 QHRIWKRMAVSWSGAK--TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 95 (222)
Q Consensus 18 ~~~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 95 (222)
....+...+.+.+... ++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++....+ .++.+.+.
T Consensus 19 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~ 91 (246)
T 1y8c_A 19 DYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQG----LKPRLACQ 91 (246)
T ss_dssp CHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTT----CCCEEECC
T ss_pred cHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcC----CCeEEEec
Confidence 3444555565555433 6789999999999999999876 4589999999999999998875432 37899999
Q ss_pred CCCCcCCCCCceeEEEEcc-cccCc---ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccc------
Q 027517 96 DALDLPFSDCFFDAITMGY-GLRNV---VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVV------ 165 (222)
Q Consensus 96 d~~~~~~~~~~~D~v~~~~-~l~~~---~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~------ 165 (222)
|+.+++++ ++||+|++.. +++|+ ++...++++++++|+|||.+++....... ...........
T Consensus 92 d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~------~~~~~~~~~~~~~~~~~ 164 (246)
T 1y8c_A 92 DISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYK------LSQVLGNNDFNYDDDEV 164 (246)
T ss_dssp CGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHH------HHTTTTTCCEEEEETTE
T ss_pred ccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHH------HHhhcCcceEEecCCcE
Confidence 99987766 7899999998 99999 56789999999999999999886543210 00000000000
Q ss_pred --cccc---------cCC----hhHHHHHh-HHhHhhcCCHHHHHHHHHHcCCeEEEEeeec-------CCeeeeEeeeC
Q 027517 166 --PVAS---------GYG----LAEEYQYL-KSSIREFLTGKDLEKLALEIGFSRAKHYELS-------GGLMGNLVATR 222 (222)
Q Consensus 166 --~~~~---------~~~----~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-------~~~~~~~~~~k 222 (222)
.+.. ... ....++.. .....+.++.+++.++|+++||++++..... .....+++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 165 FYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred EEEEecccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 0000 000 00000000 0122467899999999999999999987552 12334677765
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=157.37 Aligned_cols=174 Identities=17% Similarity=0.186 Sum_probs=129.5
Q ss_pred HHHhhCCCC-CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CC
Q 027517 26 AVSWSGAKT-GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FS 103 (222)
Q Consensus 26 ~~~~~~~~~-~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~ 103 (222)
+++.+...+ +.+|||+|||+|.++..+++.+ ++.+++++|+ +.+++.++++....+.. .++++..+|+.+.+ +.
T Consensus 170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLG--GRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCG--GGEEEEECCTTCGGGGT
T ss_pred HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCC--CceEEEeCCcccCcccC
Confidence 444444555 7899999999999999999985 6679999999 88999999887544322 47999999998865 13
Q ss_pred CCceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 104 DCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
.+.||+|++..++|++++. ..++++++++|+|||++++.+...+..........+.. .....
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~----------------~~~~~ 309 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFS----------------LHMMV 309 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHH----------------HHHHH
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhh----------------HHHHh
Confidence 3569999999999999764 89999999999999999999887655422111111111 00000
Q ss_pred -HhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 182 -SSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 182 -~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
......++.++|.++++++||++++.. .+.+.+++|+|
T Consensus 310 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~---~g~~~l~~a~k 348 (352)
T 3mcz_A 310 NTNHGELHPTPWIAGVVRDAGLAVGERS---IGRYTLLIGQR 348 (352)
T ss_dssp HSTTCCCCCHHHHHHHHHHTTCEEEEEE---ETTEEEEEEEC
T ss_pred hCCCCCcCCHHHHHHHHHHCCCceeeec---cCceEEEEEec
Confidence 112346799999999999999999843 34577888876
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-23 Score=160.78 Aligned_cols=159 Identities=26% Similarity=0.363 Sum_probs=123.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-----hcCCCeeEEeCCCCCc------
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-----ACYKNIEWVEGDALDL------ 100 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~d~~~~------ 100 (222)
..++.+|||+|||+|..+..+++.++++.+|+++|+|+.+++.++++...... ...+++.++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 45778999999999999999999876777999999999999999998754311 1115899999999987
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHh
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYL 180 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (222)
++++++||+|+++.++++++++..++++++++|||||++++.++............. ....
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-------------------~~~~ 221 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQD-------------------PILY 221 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHC-------------------HHHH
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhh-------------------HHHh
Confidence 777789999999999999999999999999999999999998776543211111000 0001
Q ss_pred HHhHhhcCCHHHHHHHHHHcCCeEEEEee
Q 027517 181 KSSIREFLTGKDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 209 (222)
.......++.+++.++|+++||+++++..
T Consensus 222 ~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 222 GECLGGALYLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HTTCTTCCBHHHHHHHHHHTTCCCEEEEE
T ss_pred hcccccCCCHHHHHHHHHHCCCceEEEEe
Confidence 11123457889999999999999876554
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-22 Score=151.89 Aligned_cols=172 Identities=16% Similarity=0.150 Sum_probs=124.6
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+++.+...++.+|||+|||+|..+..+++.. +.+++++|+|+.+++.++++....+.. .++.+...|+.+++
T Consensus 54 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~-- 127 (287)
T 1kpg_A 54 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENL--RSKRVLLAGWEQFD-- 127 (287)
T ss_dssp HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCC--SCEEEEESCGGGCC--
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCC--CCeEEEECChhhCC--
Confidence 345555667788899999999999999999775 359999999999999999887543321 47999999998765
Q ss_pred CCceeEEEEcccccCc--ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 104 DCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
++||+|++..+++|+ +++..+++++.++|||||.+++.++.......... ... +. .........++.
T Consensus 128 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-------~~~-~~--~~~~~~~~~~~~ 196 (287)
T 1kpg_A 128 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHE-------RGL-PM--SFTFARFLKFIV 196 (287)
T ss_dssp -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTT-------TTC-SC--HHHHHHHHHHHH
T ss_pred -CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCcccccc-------ccc-cc--cccccchhhhHH
Confidence 689999999999999 67899999999999999999998877644221000 000 00 000000000000
Q ss_pred H---hHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 182 S---SIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 182 ~---~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
. .....++.+++.++++++||++++......
T Consensus 197 ~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 230 (287)
T 1kpg_A 197 TEIFPGGRLPSIPMVQECASANGFTVTRVQSLQP 230 (287)
T ss_dssp HHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECHH
T ss_pred heeCCCCCCCCHHHHHHHHHhCCcEEEEEEeCcH
Confidence 0 112356899999999999999999876543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-23 Score=154.47 Aligned_cols=177 Identities=20% Similarity=0.229 Sum_probs=121.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
+++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++. +++.++++|+.+++. +++||+|++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~fD~v~~ 116 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRN--------PDAVLHHGDMRDFSL-GRRFSAVTC 116 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTCCC-SCCEEEEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC--------CCCEEEECChHHCCc-cCCcCEEEE
Confidence 45679999999999999999866 458999999999999999875 478999999999876 578999999
Q ss_pred cc-cccCcc---cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHh---------------hcccccccccCCh
Q 027517 113 GY-GLRNVV---DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMI---------------DNVVVPVASGYGL 173 (222)
Q Consensus 113 ~~-~l~~~~---~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 173 (222)
.. +++|++ +...++++++++|+|||.+++.++..+............. +.........+..
T Consensus 117 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (263)
T 3pfg_A 117 MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLV 196 (263)
T ss_dssp CTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEE
Confidence 98 999995 5678899999999999999997654433211100000000 0000000000000
Q ss_pred h---HHHH-HhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 174 A---EEYQ-YLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 174 ~---~~~~-~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
. ..+. .......+.++.+++.++|+++||+++++.....+ ..+++|+|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~-~~~~va~K 248 (263)
T 3pfg_A 197 AGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSG-RGLFTGLP 248 (263)
T ss_dssp EETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTS-SCEEEEEE
T ss_pred ecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCC-ceeEEEec
Confidence 0 0000 00112245789999999999999999998755543 44667665
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=153.05 Aligned_cols=111 Identities=21% Similarity=0.294 Sum_probs=98.4
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeE
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 109 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (222)
....++.+|||+|||+|.++..+++.++.+.+++++|+|+.+++.++++....+ .++.+.+.|+.+++++ ++||+
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~~-~~fD~ 92 (284)
T 3gu3_A 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIELN-DKYDI 92 (284)
T ss_dssp SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS----SEEEEEESCTTTCCCS-SCEEE
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC----CceEEEEcchhhcCcC-CCeeE
Confidence 356678899999999999999999886445799999999999999999875443 3799999999998774 68999
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|++..+++++++...++++++++|||||++++.++.
T Consensus 93 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 93 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 999999999999999999999999999999998876
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=158.36 Aligned_cols=172 Identities=17% Similarity=0.150 Sum_probs=128.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v 110 (222)
.+..+|||||||+|..+..+++.+ ++.+++++|+ +.+++.++++....+.. +++++..+|+.+. +++ ++||+|
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~p-~~~D~v 252 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGS--ERIHGHGANLLDRDVPFP-TGFDAV 252 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTG--GGEEEEECCCCSSSCCCC-CCCSEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcc--cceEEEEccccccCCCCC-CCcCEE
Confidence 456799999999999999999985 6779999999 99999999887543322 4799999999885 355 679999
Q ss_pred EEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcC
Q 027517 111 TMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188 (222)
Q Consensus 111 ~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (222)
++..++|++++. ..++++++++|+|||++++.+...+..........+..... ..........+.+
T Consensus 253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 320 (363)
T 3dp7_A 253 WMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISL------------YFTAMANGNSKMF 320 (363)
T ss_dssp EEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHH------------HHHHSSCSSCCSC
T ss_pred EEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhh------------hHHhhhCCCCccc
Confidence 999999999764 57899999999999999999987655433221111100000 0000111112467
Q ss_pred CHHHHHHHHHHcCCeEEEEeeecCCeeeeEeee
Q 027517 189 TGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 189 ~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 221 (222)
+.++|.++++++||+++++....+....++.++
T Consensus 321 t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~ 353 (363)
T 3dp7_A 321 HSDDLIRCIENAGLEVEEIQDNIGLGHSILQCR 353 (363)
T ss_dssp CHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEE
T ss_pred CHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEe
Confidence 999999999999999999887776656666654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-22 Score=150.72 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=122.8
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+++.+...++.+|||+|||+|.++..+++ ++.+++++|+|+.+++.++++. +++.+.++|+.++++ +
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~ 115 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY--------PHLHFDVADARNFRV-D 115 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC--------TTSCEEECCTTTCCC-S
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC--------CCCEEEECChhhCCc-C
Confidence 445566667888999999999999999987 3569999999999999998775 478999999998876 4
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCc-hhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP-FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
++||+|++..++++++++..++++++++|||||++++..+...... ....+.......... . .. ...
T Consensus 116 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~-~~~ 183 (279)
T 3ccf_A 116 KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIH-------N----PQ-ALN 183 (279)
T ss_dssp SCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCC-------C----GG-GGC
T ss_pred CCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCc-------c----cc-CcC
Confidence 7899999999999999999999999999999999999877654321 111111111100000 0 00 001
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
...+++.+++.++++++||++++.....
T Consensus 184 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 211 (279)
T 3ccf_A 184 PWYFPSIGEYVNILEKQGFDVTYAALFN 211 (279)
T ss_dssp CCCCCCHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeCCCHHHHHHHHHHcCCEEEEEEEec
Confidence 1235689999999999999998866544
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.89 E-value=9.7e-23 Score=152.25 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=122.1
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..++..+...++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++.... .++.+.+.|+.+++++
T Consensus 83 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~ 155 (254)
T 1xtp_A 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLP 155 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCC
T ss_pred HHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC-----CceEEEEccHHHCCCC
Confidence 445555566678899999999999999998874 447999999999999999886432 4789999999988877
Q ss_pred CCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 104 DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
+++||+|++..+++|++ +...++++++++|||||.+++.+.......... ..
T Consensus 156 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------~~-------------- 209 (254)
T 1xtp_A 156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV------------DK-------------- 209 (254)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE------------ET--------------
T ss_pred CCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccccee------------cc--------------
Confidence 78899999999999994 578999999999999999999876432211100 00
Q ss_pred HhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 182 SSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
......++.+++.++++++||++++.....
T Consensus 210 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 210 EDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp TTTEEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred cCCcccCCHHHHHHHHHHCCCEEEEeeecC
Confidence 001134689999999999999999887654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-22 Score=149.92 Aligned_cols=177 Identities=20% Similarity=0.253 Sum_probs=127.5
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChh------HHHHHhcchhhhhhhcCCCeeEEeCC-
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN------QLSMASSRQDLVSKACYKNIEWVEGD- 96 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~d- 96 (222)
..+++.+...++.+|||+|||+|.++..+++..++..+++++|+|+. +++.++++....+.. +++.+.+.|
T Consensus 33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG--DRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG--GGEEEECSCC
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC--CceEEEECCh
Confidence 45566667788899999999999999999998656579999999997 999999887543321 479999998
Q ss_pred --CCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhh--HHHHHHhhcccccccccCC
Q 027517 97 --ALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTT--AIQEWMIDNVVVPVASGYG 172 (222)
Q Consensus 97 --~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 172 (222)
...+++++++||+|++..+++|++++..+++.++++++|||.+++.++..+...... ...............
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 186 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIA---- 186 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHS----
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcc----
Confidence 344556668899999999999999988888888888888999999988765432211 110000000000000
Q ss_pred hhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 173 LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
..........++.+++.++++++||++++...+.
T Consensus 187 -----~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~ 220 (275)
T 3bkx_A 187 -----PSDVANIRTLITPDTLAQIAHDNTWTYTAGTIVE 220 (275)
T ss_dssp -----CCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCBC
T ss_pred -----ccccccccccCCHHHHHHHHHHCCCeeEEEEEec
Confidence 0000112246899999999999999999877653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=146.96 Aligned_cols=141 Identities=18% Similarity=0.118 Sum_probs=114.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.+++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++. ++.+..+|+.+++ +.++||+|+
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~d~~~~~-~~~~fD~v~ 107 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL---------GRPVRTMLFHQLD-AIDAYDAVW 107 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH---------TSCCEECCGGGCC-CCSCEEEEE
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc---------CCceEEeeeccCC-CCCcEEEEE
Confidence 356789999999999999999876 459999999999999999875 5678889988877 668899999
Q ss_pred EcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCC
Q 027517 112 MGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLT 189 (222)
Q Consensus 112 ~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (222)
+..+++|++ +...++++++++|||||.+++........... .. ......++
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~--------------------------~~~~~~~~ 160 (211)
T 3e23_A 108 AHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRD-KL--------------------------ARYYNYPS 160 (211)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC-TT--------------------------SCEECCCC
T ss_pred ecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccccc-cc--------------------------chhccCCC
Confidence 999999997 78899999999999999999986554322110 00 01124679
Q ss_pred HHHHHHHHHHcC-CeEEEEeeecC
Q 027517 190 GKDLEKLALEIG-FSRAKHYELSG 212 (222)
Q Consensus 190 ~~~~~~~l~~~G-f~~~~~~~~~~ 212 (222)
.+++.++++++| |++++......
T Consensus 161 ~~~~~~~l~~aG~f~~~~~~~~~~ 184 (211)
T 3e23_A 161 EEWLRARYAEAGTWASVAVESSEG 184 (211)
T ss_dssp HHHHHHHHHHHCCCSEEEEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEEeccC
Confidence 999999999999 99998776543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=150.09 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=116.1
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
...++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++... ..+++.+.++|+.++++++++||+|
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v 108 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKIAG----VDRKVQVVQADARAIPLPDESVHGV 108 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHTTT----SCTTEEEEESCTTSCCSCTTCEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhhc----cCCceEEEEcccccCCCCCCCeeEE
Confidence 4567889999999999999999865 46899999999999999988621 1258999999999888777889999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC-Cc---hhhHHHHHHhhcccccccccCChhHHHHHhHHhHhh
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST-QP---FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 186 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (222)
++..++++++++..++++++++|+|||.+++. +.... .. +...+......... +. .....
T Consensus 109 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~ 172 (263)
T 2yqz_A 109 IVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGF-PV--------------ERGLH 172 (263)
T ss_dssp EEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTC-CC--------------CCCHH
T ss_pred EECCchhhcCCHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCC-Cc--------------ccccc
Confidence 99999999999999999999999999999887 33221 11 11111111110000 00 00123
Q ss_pred cCCHHHHHHHHHHcCCeEEEEe
Q 027517 187 FLTGKDLEKLALEIGFSRAKHY 208 (222)
Q Consensus 187 ~~~~~~~~~~l~~~Gf~~~~~~ 208 (222)
.++.+++.++++++||+++...
T Consensus 173 ~~~~~~~~~~l~~~Gf~~~~~~ 194 (263)
T 2yqz_A 173 AKRLKEVEEALRRLGLKPRTRE 194 (263)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCHHHHHHHHHHcCCCcceEE
Confidence 5678899999999999977653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=150.37 Aligned_cols=173 Identities=23% Similarity=0.321 Sum_probs=121.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh--cCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
+++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++....+.. ...++.+.+.|+.+++++.++||+|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 46789999999999999999876 459999999999999999876543210 0125799999999988877899999
Q ss_pred EEcccccCcccHH---HHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcc-cccccccCChhHHHHHhHHhHhh
Q 027517 111 TMGYGLRNVVDKR---KALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNV-VVPVASGYGLAEEYQYLKSSIRE 186 (222)
Q Consensus 111 ~~~~~l~~~~~~~---~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 186 (222)
++..++++++++. .++++++++|+|||.+++.++........ ....+.... .......+..............+
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKL--YRKRYLHDFPITKEEGSFLARDPETGETEFIAH 183 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHH--HHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHH--HHHHhhhhccchhhhcceEecccccCCcceeeE
Confidence 9999999998877 89999999999999999998876433211 111111000 00000000000000000011235
Q ss_pred cCCHHHHHHHHHHcCCeEEEEeee
Q 027517 187 FLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 187 ~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
.++.+++.++++++||+++++...
T Consensus 184 ~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 184 HFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eCCHHHHHHHHHHcCCEEEEEEec
Confidence 689999999999999999887654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.7e-22 Score=153.56 Aligned_cols=170 Identities=19% Similarity=0.148 Sum_probs=122.8
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+++.+...++.+|||+|||+|..+..+++.+ ++.+++++|+ +.++. +++....+. .+++++..+|+.+ +.+
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~~--~~~v~~~~~d~~~-~~p- 246 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPDV--AGRWKVVEGDFLR-EVP- 246 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGGG--TTSEEEEECCTTT-CCC-
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccCC--CCCeEEEecCCCC-CCC-
Confidence 34455566778899999999999999999985 6778999999 45554 333322221 2589999999973 344
Q ss_pred CceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 105 CFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
+||+|++..++|++++. ..++++++++|||||++++.+...+...... ...+.. ......
T Consensus 247 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~-~~~~~d----------------~~~~~~ 308 (348)
T 3lst_A 247 -HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAH-QSKEMD----------------FMMLAA 308 (348)
T ss_dssp -CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCC-HHHHHH----------------HHHHHT
T ss_pred -CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcc-hhhhcC----------------hhhhhc
Confidence 79999999999999876 6999999999999999999987655432111 001110 011111
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeee
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 221 (222)
.....++.++|.++++++||+++++.. ..+...++.++
T Consensus 309 ~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~~ 346 (348)
T 3lst_A 309 RTGQERTAAELEPLFTAAGLRLDRVVG-TSSVMSIAVGV 346 (348)
T ss_dssp TSCCCCBHHHHHHHHHHTTEEEEEEEE-CSSSCEEEEEE
T ss_pred CCCcCCCHHHHHHHHHHCCCceEEEEE-CCCCcEEEEEE
Confidence 122457899999999999999999987 55566666665
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=148.30 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=118.8
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--- 100 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--- 100 (222)
..++..+...++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++ .++.+...|+.++
T Consensus 42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~ 109 (227)
T 3e8s_A 42 QAILLAILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEA 109 (227)
T ss_dssp HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTT
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh---------cccccchhhHHhhccc
Confidence 34555555566789999999999999999866 56899999999999999987 3677888888765
Q ss_pred CCC-CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 101 PFS-DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 101 ~~~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
+.. ..+||+|++..+++ .+++..++++++++|+|||.+++.+++............|..... .......
T Consensus 110 ~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------- 179 (227)
T 3e8s_A 110 KVPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESF-AGFAGDW-------- 179 (227)
T ss_dssp CSCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECC-TTSSSCC--------
T ss_pred ccccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhh-hccccCc--------
Confidence 433 34599999999999 888899999999999999999999877644322111111100000 0000000
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
......+++.+++.++|+++||+++++...
T Consensus 180 -~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 209 (227)
T 3e8s_A 180 -QPMPWYFRTLASWLNALDMAGLRLVSLQEP 209 (227)
T ss_dssp -CCEEEEECCHHHHHHHHHHTTEEEEEEECC
T ss_pred -ccceEEEecHHHHHHHHHHcCCeEEEEecC
Confidence 012234679999999999999999988763
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=148.03 Aligned_cols=142 Identities=19% Similarity=0.200 Sum_probs=115.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
+.+|||+|||+|..+..+++ ++.+++++|+|+.+++.++++....+.. .++.+.++|+.+++. .++||+|++..
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~-~~~fD~v~~~~ 140 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKA--EYFSFVKEDVFTWRP-TELFDLIFDYV 140 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGG--GGEEEECCCTTTCCC-SSCEEEEEEES
T ss_pred CCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCC--cceEEEECchhcCCC-CCCeeEEEECh
Confidence 35999999999999998875 4668999999999999999987543221 479999999998763 45899999999
Q ss_pred cccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 115 GLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 115 ~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
++++++ +...++++++++|+|||.+++.++........ ....++.++
T Consensus 141 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------------------~~~~~~~~~ 189 (235)
T 3lcc_A 141 FFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------------------PPYKVDVST 189 (235)
T ss_dssp STTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------------------SSCCCCHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------------------CCccCCHHH
Confidence 999997 78999999999999999999887654321100 001358899
Q ss_pred HHHHHHHcCCeEEEEeeecCC
Q 027517 193 LEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
+.++++++||+++++......
T Consensus 190 ~~~~l~~~Gf~~~~~~~~~~~ 210 (235)
T 3lcc_A 190 FEEVLVPIGFKAVSVEENPHA 210 (235)
T ss_dssp HHHHHGGGTEEEEEEEECTTC
T ss_pred HHHHHHHcCCeEEEEEecCCc
Confidence 999999999999998776543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=151.95 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=121.3
Q ss_pred HHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 26 AVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 26 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
++..+. ..+..+|||+|||+|..+..+++.+ ++.+++++|+ +.+++.+++. +++++..+|+.+ +.+.
T Consensus 194 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~p~ 261 (368)
T 3reo_A 194 ILEMYNGFEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF---------SGVEHLGGDMFD-GVPK 261 (368)
T ss_dssp HHTTCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC---------TTEEEEECCTTT-CCCC
T ss_pred HHHhcccccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc---------CCCEEEecCCCC-CCCC
Confidence 333333 5567899999999999999999986 6779999999 8888877654 589999999987 5554
Q ss_pred CceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 105 CFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
. |+|++..++|++++. .+++++++++|+|||++++.+...+............. ..+......
T Consensus 262 ~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~-------------~~d~~~~~~ 326 (368)
T 3reo_A 262 G--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVI-------------HTDALMLAY 326 (368)
T ss_dssp C--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHH-------------HHHHHHHHH
T ss_pred C--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHH-------------hhhHHHHhh
Confidence 3 999999999999764 57899999999999999999987654432111100000 000011110
Q ss_pred -hHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeee
Q 027517 183 -SIREFLTGKDLEKLALEIGFSRAKHYELSGGLMG 216 (222)
Q Consensus 183 -~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 216 (222)
.....++.++|.++++++||+++++....+..+.
T Consensus 327 ~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~v 361 (368)
T 3reo_A 327 NPGGKERTEKEFQALAMASGFRGFKVASCAFNTYV 361 (368)
T ss_dssp SSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEE
T ss_pred cCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEE
Confidence 1224578999999999999999999988877653
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=152.67 Aligned_cols=175 Identities=19% Similarity=0.169 Sum_probs=126.1
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+++.+...++.+|||+|||+|..+..+++.. ++.+++++|+ +.+++.++++....+.. .++++..+|+.+ +.+.
T Consensus 173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~-~~~~ 247 (374)
T 1qzz_A 173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLA--DRVTVAEGDFFK-PLPV 247 (374)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT--TTEEEEECCTTS-CCSC
T ss_pred HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCC--CceEEEeCCCCC-cCCC
Confidence 44455556678899999999999999999985 6679999999 99999999887544321 479999999876 3443
Q ss_pred CceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEec--CCCCCchhhHHHHHHhhcccccccccCChhHHHHHh
Q 027517 105 CFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDF--NKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYL 180 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (222)
.||+|++.+++|++++. ..++++++++|+|||++++.+. ..+.... .....+.. ....
T Consensus 248 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~~~~~----------------~~~~ 309 (374)
T 1qzz_A 248 -TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD-RFFSTLLD----------------LRML 309 (374)
T ss_dssp -CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH--------HHHHHHHH----------------HHHH
T ss_pred -CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC-cchhhhcc----------------hHHH
Confidence 49999999999999876 4899999999999999999887 4332211 11111110 0000
Q ss_pred HHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCee----eeEeeeC
Q 027517 181 KSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM----GNLVATR 222 (222)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~----~~~~~~k 222 (222)
.......++.++|.++++++||+++++.......+ .++.++|
T Consensus 310 ~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 310 TFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred HhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 11113467999999999999999999887754431 5666553
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=153.80 Aligned_cols=167 Identities=20% Similarity=0.194 Sum_probs=124.5
Q ss_pred HHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 26 AVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 26 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
++..+. ..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++. +++++..+|+.+ +.+.
T Consensus 200 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~~~ 267 (372)
T 1fp1_D 200 MLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPPL---------SGIEHVGGDMFA-SVPQ 267 (372)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC---------TTEEEEECCTTT-CCCC
T ss_pred HHHHhhccCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhhc---------CCCEEEeCCccc-CCCC
Confidence 344443 5567899999999999999999985 6678999999 9998877753 479999999987 5553
Q ss_pred CceeEEEEcccccCcccHH--HHHHHHhcccCCCcEEEEEecCCCCCchhhH---HHHHHhhcccccccccCChhHHHHH
Q 027517 105 CFFDAITMGYGLRNVVDKR--KALEESFRVLKPGSRISVLDFNKSTQPFTTA---IQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~--~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
||+|++..++|++++.. .++++++++|+|||++++.+...+....... ...... ...
T Consensus 268 --~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d----------------~~~ 329 (372)
T 1fp1_D 268 --GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLD----------------NLM 329 (372)
T ss_dssp --EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHH----------------HHH
T ss_pred --CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhh----------------HHH
Confidence 99999999999998876 9999999999999999999876544322110 011100 001
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
......+.++.++|.++++++||+++++.....+.+.++.++|
T Consensus 330 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 330 FITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 1011124569999999999999999999886555237777765
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=150.85 Aligned_cols=169 Identities=15% Similarity=0.173 Sum_probs=123.8
Q ss_pred HHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 26 AVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 26 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
++..+. ..+..+|||+|||+|..+..+++.+ ++.+++++|+ +.+++.+++. +++++..+|+.+ +.+.
T Consensus 192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~p~ 259 (364)
T 3p9c_A 192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQF---------PGVTHVGGDMFK-EVPS 259 (364)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC---------TTEEEEECCTTT-CCCC
T ss_pred HHHhcccccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhc---------CCeEEEeCCcCC-CCCC
Confidence 444444 5677899999999999999999986 6779999999 8888777654 589999999987 6664
Q ss_pred CceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH-
Q 027517 105 CFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK- 181 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 181 (222)
. |+|++..++|++++ ...++++++++|+|||++++.+...+............. ..+.....
T Consensus 260 ~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~-------------~~d~~m~~~ 324 (364)
T 3p9c_A 260 G--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVF-------------HVDMIMLAH 324 (364)
T ss_dssp C--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHH-------------HHHHHHHHH
T ss_pred C--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHH-------------HhHHHHHhc
Confidence 3 99999999999965 468899999999999999999987654322111100000 00011110
Q ss_pred HhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 182 SSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
......++.++|.++++++||+++++....+..+ ++.+.|
T Consensus 325 ~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~-vie~~k 364 (364)
T 3p9c_A 325 NPGGRERYEREFQALARGAGFTGVKSTYIYANAW-AIEFTK 364 (364)
T ss_dssp CSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEE-EEEEEC
T ss_pred ccCCccCCHHHHHHHHHHCCCceEEEEEcCCceE-EEEEeC
Confidence 0122457899999999999999999998876654 555543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.3e-22 Score=151.67 Aligned_cols=171 Identities=16% Similarity=0.163 Sum_probs=124.8
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+++.+...++.+|||+|||+|..+..+++.+ +.+++++|+|+.+++.++++....+.. +++.+.+.|+.+++
T Consensus 80 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~-- 153 (318)
T 2fk8_A 80 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTN--RSRQVLLQGWEDFA-- 153 (318)
T ss_dssp HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCS--SCEEEEESCGGGCC--
T ss_pred HHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEECChHHCC--
Confidence 345555667788899999999999999999886 459999999999999999887544322 46999999998764
Q ss_pred CCceeEEEEcccccCc--ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 104 DCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
++||+|++..+++|+ +++..+++++.++|||||.+++.++................ ........++.
T Consensus 154 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 222 (318)
T 2fk8_A 154 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLS----------FETARFIKFIV 222 (318)
T ss_dssp -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHH----------HHHHHHHHHHH
T ss_pred -CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhcccccc----------ccccchhhHHH
Confidence 679999999999999 67899999999999999999999888655321100000000 00000000000
Q ss_pred H---hHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 182 S---SIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 182 ~---~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
. ......+.+++.++++++||++++.....
T Consensus 223 ~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 223 TEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp HHTSTTCCCCCHHHHHHHHHHTTCBCCCCEECH
T ss_pred HhcCCCCcCCCHHHHHHHHHhCCCEEEEEEecc
Confidence 0 01235689999999999999998876543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=146.20 Aligned_cols=151 Identities=14% Similarity=0.063 Sum_probs=112.0
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh---------hhcCCCeeEEeCCC
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS---------KACYKNIEWVEGDA 97 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~d~ 97 (222)
+..+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.++++..... .....++++.++|+
T Consensus 15 ~~~l~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 91 (203)
T 1pjz_A 15 WSSLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF 91 (203)
T ss_dssp HHHHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred HHhcccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc
Confidence 34455567889999999999999999986 4699999999999999988753200 00125899999999
Q ss_pred CCcCCCC-CceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChh
Q 027517 98 LDLPFSD-CFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLA 174 (222)
Q Consensus 98 ~~~~~~~-~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (222)
.++++++ ++||+|++..++++++. ...++++++++|||||++++......... ..+.
T Consensus 92 ~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~----------------~~~~---- 151 (203)
T 1pjz_A 92 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL----------------LEGP---- 151 (203)
T ss_dssp SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS----------------SSSC----
T ss_pred ccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc----------------cCCC----
Confidence 9987654 68999999999998864 46789999999999998555543322110 0000
Q ss_pred HHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 175 EEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
...++.+++.+++++ ||+++......
T Consensus 152 ----------~~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 152 ----------PFSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp ----------CCCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred ----------CCCCCHHHHHHHhcC-CcEEEEecccc
Confidence 012578999999998 99987766543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-22 Score=148.19 Aligned_cols=127 Identities=20% Similarity=0.343 Sum_probs=99.6
Q ss_pred hHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh
Q 027517 5 SLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 84 (222)
Q Consensus 5 ~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (222)
..||... .......+.+.+...+ +++.+|||+|||+|..+..+++. .+++++|+++.+++.++++....+
T Consensus 9 ~~yd~~~---~~~~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~- 78 (243)
T 3d2l_A 9 YVYDELM---QDVPYPEWVAWVLEQV--EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN- 78 (243)
T ss_dssp HHHHHHT---TTCCHHHHHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT-
T ss_pred HHHHHhh---hcccHHHHHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC-
Confidence 3455533 2333455656666654 45689999999999999988754 589999999999999998875433
Q ss_pred hcCCCeeEEeCCCCCcCCCCCceeEEEEcc-cccCc---ccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 85 ACYKNIEWVEGDALDLPFSDCFFDAITMGY-GLRNV---VDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 85 ~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~-~l~~~---~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.++.+.+.|+.+.+.+ ++||+|++.. +++|+ ++...+++++.++|+|||.+++....
T Consensus 79 ---~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 79 ---RHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp ---CCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---CceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 4789999999887765 7899999986 88888 45678999999999999999875543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-22 Score=146.11 Aligned_cols=177 Identities=16% Similarity=0.180 Sum_probs=119.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|..+..+++.. .+++++|+|+.+++.++++. +++.+.++|+.+++. +++||+|+|
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~~D~v~~ 106 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL--------PDATLHQGDMRDFRL-GRKFSAVVS 106 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC--------TTCEEEECCTTTCCC-SSCEEEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC--------CCCEEEECCHHHccc-CCCCcEEEE
Confidence 567899999999999999999884 28999999999999998875 478999999998776 578999996
Q ss_pred -cccccCcc---cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhh---cccc--------------cccccC
Q 027517 113 -GYGLRNVV---DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMID---NVVV--------------PVASGY 171 (222)
Q Consensus 113 -~~~l~~~~---~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~---~~~~--------------~~~~~~ 171 (222)
..+++|++ +...++++++++|+|||.+++.++..+..........+... .... ......
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (239)
T 3bxo_A 107 MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTV 186 (239)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEE
Confidence 44888884 56789999999999999999987655432111000000000 0000 000000
Q ss_pred Ch-hHHHH-HhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 172 GL-AEEYQ-YLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 172 ~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
.. ..... .......+.++++++.++|+++||+++..... .+...+++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~-~~~~~~~va~K 238 (239)
T 3bxo_A 187 ADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGG-PSGRGLFVGVP 238 (239)
T ss_dssp EETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESST-TTSSCEEEEEE
T ss_pred ecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcC-CCCceEEEEec
Confidence 00 00000 00011235789999999999999987776543 34456777775
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-22 Score=151.98 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=107.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh---CCCCcE--EEEeCChhHHHHHhcchhhhhhhcCCCee--EEeCCCCCcC----
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQV---GSQGKV--IGLDFSKNQLSMASSRQDLVSKACYKNIE--WVEGDALDLP---- 101 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~--~~~D~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~d~~~~~---- 101 (222)
.++.+|||||||+|..+..+++.+ .++..+ +++|+|++|++.++++..... ...++. +...++.+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~ 128 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS--NLENVKFAWHKETSSEYQSRML 128 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS--SCTTEEEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc--CCCcceEEEEecchhhhhhhhc
Confidence 456799999999998765443222 144544 999999999999998864321 113444 4455655443
Q ss_pred --CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 102 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 102 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
+++++||+|++..++||++++..++++++++|||||++++...... ..+...+..+.. .. ..
T Consensus 129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~-~~~~~~~~~~~~-~~----~~---------- 192 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS-SGWDKLWKKYGS-RF----PQ---------- 192 (292)
T ss_dssp TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT-SHHHHHHHHHGG-GS----CC----------
T ss_pred cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCC-ccHHHHHHHHHH-hc----cC----------
Confidence 4567899999999999999999999999999999999999876542 222111111110 00 00
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEEE
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAKH 207 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 207 (222)
..+..+++.+++.++|+++||+++..
T Consensus 193 --~~~~~~~~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 193 --DDLCQYITSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp --CTTCCCCCHHHHHHHHHHHTCCEEEE
T ss_pred --CCcccCCCHHHHHHHHHHCCCceEEE
Confidence 01234678999999999999998764
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=150.43 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=116.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
++.+|||+|||+|..+..+++.. ..+++++|+++.+++.++++....+. .++.+++.|+.+++++.++||+|++.
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~ 153 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK---RVRNYFCCGLQDFTPEPDSYDVIWIQ 153 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG---GEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCC---ceEEEEEcChhhcCCCCCCEEEEEEc
Confidence 57899999999999999988763 45899999999999999988755421 46899999998887776789999999
Q ss_pred ccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHH
Q 027517 114 YGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 191 (222)
Q Consensus 114 ~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (222)
.+++|+++. ..+++++.++|+|||.+++.+.......... .. ......+.+
T Consensus 154 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------~~---------------~~~~~~~~~ 206 (241)
T 2ex4_A 154 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD------------DV---------------DSSVCRDLD 206 (241)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEE------------TT---------------TTEEEEBHH
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceec------------cc---------------CCcccCCHH
Confidence 999999874 4899999999999999999877654311000 00 001234889
Q ss_pred HHHHHHHHcCCeEEEEeeec
Q 027517 192 DLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 192 ~~~~~l~~~Gf~~~~~~~~~ 211 (222)
++.++++++||++++.....
T Consensus 207 ~~~~~l~~aGf~~~~~~~~~ 226 (241)
T 2ex4_A 207 VVRRIICSAGLSLLAEERQE 226 (241)
T ss_dssp HHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHHHHcCCeEEEeeecC
Confidence 99999999999999987654
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-21 Score=141.05 Aligned_cols=143 Identities=24% Similarity=0.298 Sum_probs=111.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
++.+|||+|||+|.++..+++ . +++|+++.+++.++++ ++.+.+.|+.+++++.++||+|++.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~------~-~~vD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKI------K-IGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMV 109 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTC------C-EEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHH------H-hccCCCHHHHHHHHhc----------CCEEEEcccccCCCCCCCeeEEEEc
Confidence 377999999999999987762 1 9999999999998876 5788999998888777789999999
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHH
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 193 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (222)
.++++++++..+++++.++|+|||.+++.++..... . ..++... ..... .......++.+++
T Consensus 110 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-~----~~~~~~~---~~~~~----------~~~~~~~~~~~~l 171 (219)
T 1vlm_A 110 TTICFVDDPERALKEAYRILKKGGYLIVGIVDRESF-L----GREYEKN---KEKSV----------FYKNARFFSTEEL 171 (219)
T ss_dssp SCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSH-H----HHHHHHT---TTC-C----------CSTTCCCCCHHHH
T ss_pred chHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccH-H----HHHHHHH---hcCcc----------hhcccccCCHHHH
Confidence 999999999999999999999999999988765321 1 1111100 00000 0012346799999
Q ss_pred HHHHHHcCCeEEEEeeec
Q 027517 194 EKLALEIGFSRAKHYELS 211 (222)
Q Consensus 194 ~~~l~~~Gf~~~~~~~~~ 211 (222)
.++++++||++++.....
T Consensus 172 ~~~l~~~Gf~~~~~~~~~ 189 (219)
T 1vlm_A 172 MDLMRKAGFEEFKVVQTL 189 (219)
T ss_dssp HHHHHHTTCEEEEEEEEC
T ss_pred HHHHHHCCCeEEEEeccc
Confidence 999999999999877654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=142.06 Aligned_cols=163 Identities=20% Similarity=0.159 Sum_probs=115.6
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh--cCCCeeEEeCCCCCcC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDALDLP 101 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~ 101 (222)
+.+.+.+...++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.++++....+.. ...++.+.++|+...+
T Consensus 19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 97 (219)
T 3jwg_A 19 GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD 97 (219)
T ss_dssp HHHHHHHHHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC
T ss_pred HHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc
Confidence 445555555677899999999999999999763 4469999999999999999887543210 0128999999998777
Q ss_pred CCCCceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 102 FSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
.+.++||+|++..+++|+++. ..+++++.++|||||.++..... ........... ...
T Consensus 98 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~-~~~~~~~~~~~-------------------~~~ 157 (219)
T 3jwg_A 98 KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK-EYNFHYGNLFE-------------------GNL 157 (219)
T ss_dssp GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG-GGGGCCCCT------------------------
T ss_pred cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch-hhhhhhcccCc-------------------ccc
Confidence 666789999999999999865 79999999999999966554321 11100000000 000
Q ss_pred hHHhHhhcCCHHHHH----HHHHHcCCeEEEE
Q 027517 180 LKSSIREFLTGKDLE----KLALEIGFSRAKH 207 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~----~~l~~~Gf~~~~~ 207 (222)
....+...++.+++. ++++++||++...
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 158 RHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred cccCceeeecHHHHHHHHHHHHHHCCcEEEEE
Confidence 011223346888888 8999999977543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-22 Score=143.85 Aligned_cols=163 Identities=16% Similarity=0.143 Sum_probs=115.7
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh--cCCCeeEEeCCCCCc
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDALDL 100 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~ 100 (222)
...+.+.+...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++....+.. ...++.+.++|+...
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (217)
T 3jwh_A 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ 96 (217)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence 3456666666678899999999999999999863 4569999999999999999886432210 013799999999776
Q ss_pred CCCCCceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHH
Q 027517 101 PFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQ 178 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (222)
+.+.++||+|++..+++|+++. ..+++++.++|||||.++++.... + ...+. .. ....
T Consensus 97 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~----~----~~~~~-~~-----------~~~~ 156 (217)
T 3jwh_A 97 DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIE----Y----NVKFA-NL-----------PAGK 156 (217)
T ss_dssp CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHH----H----HHHTC------------------
T ss_pred cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcc----c----chhhc-cc-----------cccc
Confidence 6666789999999999999855 899999999999999776653210 0 00000 00 0000
Q ss_pred HhHHhHhhcCCHHHHH----HHHHHcCCeEEE
Q 027517 179 YLKSSIREFLTGKDLE----KLALEIGFSRAK 206 (222)
Q Consensus 179 ~~~~~~~~~~~~~~~~----~~l~~~Gf~~~~ 206 (222)
.....+...++++++. ++++++||++..
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 157 LRHKDHRFEWTRSQFQNWANKITERFAYNVQF 188 (217)
T ss_dssp -----CCSCBCHHHHHHHHHHHHHHSSEEEEE
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCceEEE
Confidence 0011222346888888 999999998754
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-21 Score=148.67 Aligned_cols=175 Identities=20% Similarity=0.213 Sum_probs=128.4
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+++.+...++.+|||+|||+|..+..+++.. ++.+++++|+ +.+++.++++....+.. .++++..+|+.+ +.+.
T Consensus 174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~-~~~~ 248 (360)
T 1tw3_A 174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLS--DRVDVVEGDFFE-PLPR 248 (360)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCT--TTEEEEECCTTS-CCSS
T ss_pred HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCC--CceEEEeCCCCC-CCCC
Confidence 34455556678899999999999999999885 6679999999 99999999887544321 489999999876 3343
Q ss_pred CceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecC-CCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 105 CFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFN-KSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
.||+|++..++|++++. ..++++++++|+|||++++.+.. .+..... ....+.. .....
T Consensus 249 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~~~~----------------~~~~~ 310 (360)
T 1tw3_A 249 -KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN-EQFTELD----------------LRMLV 310 (360)
T ss_dssp -CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS-HHHHHHH----------------HHHHH
T ss_pred -CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc-chhhhcc----------------HHHhh
Confidence 49999999999999765 58999999999999999999877 3322110 1111110 00001
Q ss_pred HhHhhcCCHHHHHHHHHHcCCeEEEEeeecCC----eeeeEeeeC
Q 027517 182 SSIREFLTGKDLEKLALEIGFSRAKHYELSGG----LMGNLVATR 222 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~----~~~~~~~~k 222 (222)
......++.++|.++++++||+++++...... ...++.++|
T Consensus 311 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 311 FLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred hcCCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 11134679999999999999999998877643 256666654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-22 Score=149.89 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=108.0
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh-------------------------
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA------------------------- 85 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~------------------------- 85 (222)
+..++.+|||||||+|.++..++.. + ..+|+++|+|+.+++.+++++......
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~-~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD-S-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG-T-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh-h-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 4456789999999999887765543 1 137999999999999998765321100
Q ss_pred -cCCCee-EEeCCCCCc-CC---CCCceeEEEEcccccCc----ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHH
Q 027517 86 -CYKNIE-WVEGDALDL-PF---SDCFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 155 (222)
Q Consensus 86 -~~~~i~-~~~~d~~~~-~~---~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~ 155 (222)
...++. +.++|+.+. ++ ..++||+|++++++||+ ++...++++++++|||||.+++.+...... +.
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-~~--- 205 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-YM--- 205 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-EE---
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-ce---
Confidence 001343 888998873 32 24689999999999985 456789999999999999999987543221 00
Q ss_pred HHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 156 QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.+.. ......++.+++.++|+++||++++.....
T Consensus 206 ------------~g~~----------~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 206 ------------VGKR----------EFSCVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp ------------ETTE----------EEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred ------------eCCe----------EeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 0000 000124689999999999999999887654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-23 Score=163.83 Aligned_cols=169 Identities=15% Similarity=0.137 Sum_probs=120.9
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
...+++.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.... ....+...+...+++
T Consensus 96 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~l~~ 167 (416)
T 4e2x_A 96 ARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREKGIRV-----RTDFFEKATADDVRR 167 (416)
T ss_dssp HHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTTTCCE-----ECSCCSHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHcCCCc-----ceeeechhhHhhccc
Confidence 344555566677889999999999999999875 459999999999999998772100 011112223333445
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
++++||+|++.++++|++++..++++++++|||||++++..+.... . ..... +.....
T Consensus 168 ~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~------~---~~~~~-------------~~~~~~ 225 (416)
T 4e2x_A 168 TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGD------I---VAKTS-------------FDQIFD 225 (416)
T ss_dssp HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHH------H---HHHTC-------------GGGCST
T ss_pred CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHH------h---hhhcc-------------hhhhhh
Confidence 5678999999999999999999999999999999999987654211 0 00000 000001
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEeeec--CCeeeeEeee
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHYELS--GGLMGNLVAT 221 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~--~~~~~~~~~~ 221 (222)
.+..+++.+++.++++++||++++...++ ++.+..++++
T Consensus 226 ~~~~~~s~~~l~~ll~~aGf~~~~~~~~~~~~g~l~~~~~~ 266 (416)
T 4e2x_A 226 EHFFLFSATSVQGMAQRCGFELVDVQRLPVHGGEVRYTLAR 266 (416)
T ss_dssp TCCEECCHHHHHHHHHHTTEEEEEEEEECGGGSEEEEEEEE
T ss_pred hhhhcCCHHHHHHHHHHcCCEEEEEEEccCCCCEEEEEEEe
Confidence 22346899999999999999999988865 6666666554
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-21 Score=149.35 Aligned_cols=159 Identities=20% Similarity=0.268 Sum_probs=120.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..+..+|||+|||+|..+..+++.+ ++.+++++|+ +.+++.+++. +++++..+|+.+ +.+ .||+|+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~p--~~D~v~ 251 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGS---------NNLTYVGGDMFT-SIP--NADAVL 251 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCB---------TTEEEEECCTTT-CCC--CCSEEE
T ss_pred cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccC---------CCcEEEeccccC-CCC--CccEEE
Confidence 3566899999999999999999885 6679999999 9999887763 469999999976 444 399999
Q ss_pred EcccccCcccHH--HHHHHHhcccCC---CcEEEEEecCCCCCchhh---HHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 112 MGYGLRNVVDKR--KALEESFRVLKP---GSRISVLDFNKSTQPFTT---AIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 112 ~~~~l~~~~~~~--~~l~~~~~~l~~---gG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+..++|++++.. .++++++++||| ||++++.+...+...... ....... .......
T Consensus 252 ~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d----------------~~~~~~~ 315 (352)
T 1fp2_A 252 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMD----------------VNMACLN 315 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHH----------------HHGGGGT
T ss_pred eehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhcc----------------HHHHhcc
Confidence 999999998776 999999999999 999999987754432110 1111110 0000001
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
.+.++.++|.++++++||+++++.... +...++.+++
T Consensus 316 -g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 352 (352)
T 1fp2_A 316 -GKERNEEEWKKLFIEAGFQHYKISPLT-GFLSLIEIYP 352 (352)
T ss_dssp -CCCEEHHHHHHHHHHTTCCEEEEEEEE-TTEEEEEEEC
T ss_pred -CCCCCHHHHHHHHHHCCCCeeEEEecC-CCcEEEEEeC
Confidence 234689999999999999999988754 4556777654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=135.60 Aligned_cols=129 Identities=24% Similarity=0.280 Sum_probs=109.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.+++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++. +++.+.+.|+.+.+++.++||+|+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~~D~i~ 112 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF--------PEARWVVGDLSVDQISETDFDLIV 112 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTSCCCCCCEEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC--------CCCcEEEcccccCCCCCCceeEEE
Confidence 357789999999999999999876 458999999999999999875 478999999998777677899999
Q ss_pred Ec-ccccCc--ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcC
Q 027517 112 MG-YGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188 (222)
Q Consensus 112 ~~-~~l~~~--~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (222)
+. .+++++ ++...+++++.++|+|||.+++...... .+
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~---------------------------------------~~ 153 (195)
T 3cgg_A 113 SAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR---------------------------------------GW 153 (195)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS---------------------------------------SC
T ss_pred ECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC---------------------------------------Cc
Confidence 98 678877 4468899999999999999988654321 24
Q ss_pred CHHHHHHHHHHcCCeEEEEeee
Q 027517 189 TGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 189 ~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
+.+++.++++++||++++....
T Consensus 154 ~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 154 VFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp CHHHHHHHHHHHTEEEEEEESS
T ss_pred CHHHHHHHHHHcCCEEeeeecc
Confidence 6789999999999999887654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=147.44 Aligned_cols=185 Identities=17% Similarity=0.203 Sum_probs=122.5
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
....++..+...++ +|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+.....++.++++|+.+++
T Consensus 71 ~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 71 EAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 33455555554444 9999999999999999976 4689999999999999999876533211147999999999987
Q ss_pred CCCCceeEEEEc-ccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCch--hhHHHHHHh--------hcccccc-
Q 027517 102 FSDCFFDAITMG-YGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPF--TTAIQEWMI--------DNVVVPV- 167 (222)
Q Consensus 102 ~~~~~~D~v~~~-~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~--~~~~~~~~~--------~~~~~~~- 167 (222)
+ +++||+|++. .++++++ +...++++++++|+|||.+++..+....... ......+.. .......
T Consensus 147 ~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (299)
T 3g2m_A 147 L-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAE 225 (299)
T ss_dssp C-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEE
T ss_pred c-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccc
Confidence 6 5789988864 6677665 4689999999999999999998876532100 000000000 0000000
Q ss_pred -cccCChh----HHHH-HhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 168 -ASGYGLA----EEYQ-YLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 168 -~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
....... .... .......++++++++.++|+++||++++...+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 226 EIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp EEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred cEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 0000000 0000 001123457899999999999999999998886
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.8e-22 Score=142.61 Aligned_cols=160 Identities=17% Similarity=0.190 Sum_probs=116.5
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
...++.+|||+|||+|..+..++.. .+.+++++|+|+.+++.++++....+ .++.+.+.|+.++++++++||+|
T Consensus 20 ~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v 93 (209)
T 2p8j_A 20 ESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENN----FKLNISKGDIRKLPFKDESMSFV 93 (209)
T ss_dssp HSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHT----CCCCEEECCTTSCCSCTTCEEEE
T ss_pred ccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC----CceEEEECchhhCCCCCCceeEE
Confidence 3456789999999999985544444 35699999999999999998875433 47899999999988777889999
Q ss_pred EEcccccCc--ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcC
Q 027517 111 TMGYGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188 (222)
Q Consensus 111 ~~~~~l~~~--~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (222)
++..+++|+ ++...++++++++|+|||.+++.++........... ............ .......++
T Consensus 94 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------~~~~~~~~~ 161 (209)
T 2p8j_A 94 YSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGE--KIGEGEFLQLER----------GEKVIHSYV 161 (209)
T ss_dssp EECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSE--EEETTEEEECC-----------CCCEEEEEE
T ss_pred EEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchh--hhccccceeccC----------CCceeEEec
Confidence 999999999 678899999999999999999988876443211000 000000000000 001122577
Q ss_pred CHHHHHHHHHHcCCeEEEEe
Q 027517 189 TGKDLEKLALEIGFSRAKHY 208 (222)
Q Consensus 189 ~~~~~~~~l~~~Gf~~~~~~ 208 (222)
+.+++.+++++.||...+..
T Consensus 162 ~~~e~~~~~~~~g~~~~~~~ 181 (209)
T 2p8j_A 162 SLEEADKYFKDMKVLFKEDR 181 (209)
T ss_dssp CHHHHHHTTTTSEEEEEEEE
T ss_pred CHHHHHHHHhhcCceeeeee
Confidence 99999999999999876544
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=138.86 Aligned_cols=148 Identities=18% Similarity=0.130 Sum_probs=116.5
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
+.+.+...++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++....+. +++.+.+.|+.+.++ ++
T Consensus 24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~-~~ 96 (199)
T 2xvm_A 24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENL---DNLHTRVVDLNNLTF-DR 96 (199)
T ss_dssp HHHHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTC---TTEEEEECCGGGCCC-CC
T ss_pred HHHHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCC---CCcEEEEcchhhCCC-CC
Confidence 445555567789999999999999999876 45999999999999999988754432 479999999998776 67
Q ss_pred ceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 106 FFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+||+|++..+++|++ +...+++++.++|+|||.+++.+.......... . .
T Consensus 97 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~---------------~-------------~ 148 (199)
T 2xvm_A 97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT---------------V-------------G 148 (199)
T ss_dssp CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC---------------S-------------C
T ss_pred CceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC---------------C-------------C
Confidence 899999999999997 789999999999999999888766543321000 0 0
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
....++.+++.+++++ |++++..+.
T Consensus 149 ~~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 149 FPFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp CSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred CCCccCHHHHHHHhcC--CeEEEeccc
Confidence 1135688999999976 999886644
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=139.08 Aligned_cols=162 Identities=21% Similarity=0.246 Sum_probs=119.7
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC--cCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LPF 102 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~ 102 (222)
.+.+.+. .++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++. ..+...|+.+ .++
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~----------~~~~~~d~~~~~~~~ 89 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL----------DHVVLGDIETMDMPY 89 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS----------SEEEESCTTTCCCCS
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC----------CcEEEcchhhcCCCC
Confidence 3444444 57789999999999999999876 369999999999999998764 2678888876 455
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
++++||+|++..+++|++++..+++++.++|+|||.+++..+...... ............. .. .....
T Consensus 90 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~-~~--------~~~~~ 157 (230)
T 3cc8_A 90 EEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHIS---VLAPLLAGNWTYT-EY--------GLLDK 157 (230)
T ss_dssp CTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHH---HHHHHHTTCCCCB-SS--------STTBT
T ss_pred CCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHH---HHHHHhcCCceec-cC--------CCCCc
Confidence 667899999999999999999999999999999999999876653321 1111111111000 00 00011
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
.+.+.++.+++.++++++||++++......
T Consensus 158 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 187 (230)
T 3cc8_A 158 THIRFFTFNEMLRMFLKAGYSISKVDRVYV 187 (230)
T ss_dssp TCCCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred ceEEEecHHHHHHHHHHcCCeEEEEEeccc
Confidence 223568999999999999999998877554
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-21 Score=141.28 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=109.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh---------hhh-----hcCCCeeEEeCC
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL---------VSK-----ACYKNIEWVEGD 96 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~---------~~~-----~~~~~i~~~~~d 96 (222)
...++.+|||+|||+|..+..|++. +.+|+|+|+|+.+++.++++... ... ....++.+.++|
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D 141 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS 141 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECc
Confidence 3356789999999999999999976 56999999999999999766421 000 011589999999
Q ss_pred CCCcCCCC-CceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCCh
Q 027517 97 ALDLPFSD-CFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL 173 (222)
Q Consensus 97 ~~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (222)
+.+++.+. ++||+|++..++++++ +...+++++.++|||||++++.+........ .+.
T Consensus 142 ~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~----------------~g~--- 202 (252)
T 2gb4_A 142 IFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH----------------AGP--- 202 (252)
T ss_dssp TTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC----------------CCS---
T ss_pred cccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC----------------CCC---
Confidence 99987653 7899999999999885 4567999999999999999765544221100 000
Q ss_pred hHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 174 AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
...++++++.+++++ +|+++.....
T Consensus 203 -----------~~~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 203 -----------PFYVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp -----------SCCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred -----------CCCCCHHHHHHHhhC-CeEEEEEecc
Confidence 012588999999987 5998876654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=149.34 Aligned_cols=156 Identities=17% Similarity=0.247 Sum_probs=109.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh----------------------------
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA---------------------------- 85 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~---------------------------- 85 (222)
++.+|||||||+|..+..+++.+ +..+|+|+|+++.+++.|+++.......
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 67899999999999999999986 4569999999999999999886543210
Q ss_pred ---------------------------cCCCeeEEeCCCCCcC-----CCCCceeEEEEcccccCcc------cHHHHHH
Q 027517 86 ---------------------------CYKNIEWVEGDALDLP-----FSDCFFDAITMGYGLRNVV------DKRKALE 127 (222)
Q Consensus 86 ---------------------------~~~~i~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~------~~~~~l~ 127 (222)
...++.+.++|+.... +..++||+|+|..+++|+. +...+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 0147999999987643 4567899999999997763 6788999
Q ss_pred HHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHH--cCCeEE
Q 027517 128 ESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALE--IGFSRA 205 (222)
Q Consensus 128 ~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~Gf~~~ 205 (222)
+++++|+|||.|++.... +.. .... ... .. ........-.+.++++.++|.+ +||+.+
T Consensus 205 ~~~~~LkpGG~lil~~~~-----~~~-y~~~----------~~~--~~--~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~ 264 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQP-----WSS-YGKR----------KTL--TE--TIYKNYYRIQLKPEQFSSYLTSPDVGFSSY 264 (292)
T ss_dssp HHHHHEEEEEEEEEECCC-----HHH-HHTT----------TTS--CH--HHHHHHHHCCCCGGGHHHHHTSTTTCCCEE
T ss_pred HHHHHhCCCcEEEEecCC-----chh-hhhh----------hcc--cH--HHHhhhhcEEEcHHHHHHHHHhcCCCceEE
Confidence 999999999999885321 110 0000 000 00 0001111224568899999999 999888
Q ss_pred EEeee
Q 027517 206 KHYEL 210 (222)
Q Consensus 206 ~~~~~ 210 (222)
+....
T Consensus 265 ~~~~~ 269 (292)
T 3g07_A 265 ELVAT 269 (292)
T ss_dssp EEC--
T ss_pred EEecc
Confidence 77654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=143.80 Aligned_cols=125 Identities=23% Similarity=0.251 Sum_probs=102.3
Q ss_pred hhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh-hhcCCCeeEEeCC
Q 027517 18 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-KACYKNIEWVEGD 96 (222)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~d 96 (222)
....+...+...+...++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++..... .....++.+...|
T Consensus 41 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d 117 (293)
T 3thr_A 41 RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 117 (293)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred hHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecC
Confidence 33556677777776677889999999999999999876 4599999999999999987652211 0011478899999
Q ss_pred CCCcC---CCCCceeEEEEc-ccccCccc-------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 97 ALDLP---FSDCFFDAITMG-YGLRNVVD-------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 97 ~~~~~---~~~~~~D~v~~~-~~l~~~~~-------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+.+++ +++++||+|++. .+++|+++ ...++++++++|||||++++..++
T Consensus 118 ~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 118 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp GGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 98876 667889999998 89999998 899999999999999999987654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=140.76 Aligned_cols=106 Identities=30% Similarity=0.463 Sum_probs=91.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++....+ .++.+.++|+.++++++++||+|++
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~~D~v~~ 109 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFEDKTFDYVIF 109 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CCceEEECchhcCCCCCCcEEEEEE
Confidence 457899999999999999888763 389999999999999998875443 5899999999988777778999999
Q ss_pred ccc--ccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 113 GYG--LRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 113 ~~~--l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+.+ +++.++...++++++++|+|||.+++.++.
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 110 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 999 666677889999999999999999998765
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=146.25 Aligned_cols=111 Identities=20% Similarity=0.302 Sum_probs=96.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC------Cc
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD------CF 106 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~------~~ 106 (222)
.++.+|||+|||+|..+..+++.+.+..+++++|+|+.+++.++++..... ....++.++++|+.+++++. ++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP-DTYKNVSFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC--CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc-CCCCceEEEEcCHHhCCccccccccCCC
Confidence 578899999999999999999875467799999999999999999875430 11268999999999987665 78
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
||+|++..+++|+ ++..+++++.++|+|||.+++.++.
T Consensus 114 fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 114 IDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp EEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999999999999 9999999999999999999985544
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=135.16 Aligned_cols=135 Identities=25% Similarity=0.337 Sum_probs=106.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
++.+|||+|||+|..+..+ +. +++++|+++.+++.++++. +++.+.+.|+.++++++++||+|++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l------~~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL------PYPQKVGVEPSEAMLAVGRRRA--------PEATWVRAWGEALPFPGESFDVVLL 101 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC------CCSEEEEECCCHHHHHHHHHHC--------TTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC------CCCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcccccCCCCCCcEEEEEE
Confidence 7789999999999998776 34 8999999999999999875 4789999999998887788999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
..+++|++++..+++++.++|||||.+++.++..... +.... ....... .....+.+++|.++
T Consensus 102 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-~~~~~-~~~~~~~---------------~~~~~~~~~~s~~~ 164 (211)
T 2gs9_A 102 FTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSP-WAALY-RRLGEKG---------------VLPWAQARFLARED 164 (211)
T ss_dssp ESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTSH-HHHHH-HHHHHTT---------------CTTGGGCCCCCHHH
T ss_pred cChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcCc-HHHHH-HHHhhcc---------------CccccccccCCHHH
Confidence 9999999999999999999999999999988775432 11111 1110000 00012345789999
Q ss_pred HHHHHHHcC
Q 027517 193 LEKLALEIG 201 (222)
Q Consensus 193 ~~~~l~~~G 201 (222)
+.++++ |
T Consensus 165 l~~~l~--G 171 (211)
T 2gs9_A 165 LKALLG--P 171 (211)
T ss_dssp HHHHHC--S
T ss_pred HHHHhc--C
Confidence 999998 7
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=146.17 Aligned_cols=159 Identities=20% Similarity=0.259 Sum_probs=119.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.+..+|||+|||+|.++..+++.+ ++.+++++|+ +.+++.+++. +++++..+|+.+ +.+ +||+|++
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~~--~~D~v~~ 257 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTGN---------ENLNFVGGDMFK-SIP--SADAVLL 257 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCCC---------SSEEEEECCTTT-CCC--CCSEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhcccC---------CCcEEEeCccCC-CCC--CceEEEE
Confidence 456799999999999999999985 6779999999 7888776652 469999999987 554 4999999
Q ss_pred cccccCcccHH--HHHHHHhcccCC---CcEEEEEecCCCCCchh---hHHHHHHhhcccccccccCChhHHHHHhHHhH
Q 027517 113 GYGLRNVVDKR--KALEESFRVLKP---GSRISVLDFNKSTQPFT---TAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 184 (222)
Q Consensus 113 ~~~l~~~~~~~--~~l~~~~~~l~~---gG~l~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (222)
..++|++++.. .++++++++|+| ||++++.+...+..... ........ ........
T Consensus 258 ~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d----------------~~~~~~~~ 321 (358)
T 1zg3_A 258 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYD----------------LVMLTMFL 321 (358)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHH----------------HHHHHHHS
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhC----------------HHHhccCC
Confidence 99999998866 999999999999 99999988765433211 01111110 11111111
Q ss_pred hhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 185 REFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 185 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
.+.++.++|.++++++||+++++... .+...++.+++
T Consensus 322 g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~~ 358 (358)
T 1zg3_A 322 GKERTKQEWEKLIYDAGFSSYKITPI-SGFKSLIEVYP 358 (358)
T ss_dssp CCCEEHHHHHHHHHHTTCCEEEEEEE-TTTEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHcCCCeeEEEec-CCCcEEEEEeC
Confidence 34579999999999999999998875 44556777664
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=135.59 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=91.6
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---CCCCC
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDC 105 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~ 105 (222)
.+...|+.+|||+|||+|.++.++++..++.++|+++|+++++++.++++.... +|+..+..|.... +...+
T Consensus 72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-----~ni~~V~~d~~~p~~~~~~~~ 146 (233)
T 4df3_A 72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-----RNIFPILGDARFPEKYRHLVE 146 (233)
T ss_dssp CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-----TTEEEEESCTTCGGGGTTTCC
T ss_pred hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-----cCeeEEEEeccCccccccccc
Confidence 356789999999999999999999999999999999999999999998876543 5899999888653 34557
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
++|+|++.. .+..+...++.++++.|||||++++...
T Consensus 147 ~vDvVf~d~--~~~~~~~~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 147 GVDGLYADV--AQPEQAAIVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp CEEEEEECC--CCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEEEec--cCChhHHHHHHHHHHhccCCCEEEEEEe
Confidence 899998743 4446678899999999999999988653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-20 Score=140.83 Aligned_cols=174 Identities=17% Similarity=0.240 Sum_probs=118.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCCceeEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAI 110 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v 110 (222)
..++.+|||+|||+|..+..+++. +..+++++|+++.+++.++++....+.. .++.++++|+.+.++ ++++||+|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~v 137 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRR--FKVFFRAQDSYGRHMDLGKEFDVI 137 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCS--SEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCC--ccEEEEECCccccccCCCCCcCEE
Confidence 467789999999999999988876 2458999999999999999887543221 368999999998776 56789999
Q ss_pred EEcccccC----cccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHH-Hhhcccc-cccc--cCCh--hHHHH--
Q 027517 111 TMGYGLRN----VVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEW-MIDNVVV-PVAS--GYGL--AEEYQ-- 178 (222)
Q Consensus 111 ~~~~~l~~----~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~--~~~~--~~~~~-- 178 (222)
++..++++ .++...+++++.++|+|||.+++..+.... ....+... +...... .... .... ...|.
T Consensus 138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 215 (298)
T 1ri5_A 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV--ILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFT 215 (298)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH--HHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEE
T ss_pred EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHH--HHHHHccCccCCeeEEEEeCccccccccccceEEEE
Confidence 99999977 466789999999999999999998755311 10000000 0000000 0000 0000 00000
Q ss_pred ---HhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 179 ---YLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 179 ---~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.......++++++++.++++++||++++...+.
T Consensus 216 l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 216 LLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp ETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred EchhhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 000112356799999999999999999887653
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-21 Score=142.08 Aligned_cols=102 Identities=22% Similarity=0.298 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
.+.+|||||||+|..+..+++. +.+|+|+|+|+.|++.++++ +++.+.++|++++++++++||+|++.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~~---------~~v~~~~~~~e~~~~~~~sfD~v~~~ 106 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALRH---------PRVTYAVAPAEDTGLPPASVDVAIAA 106 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCCC---------TTEEEEECCTTCCCCCSSCEEEEEEC
T ss_pred CCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhhc---------CCceeehhhhhhhcccCCcccEEEEe
Confidence 4569999999999999999865 46899999999999988765 58999999999999988999999999
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
.++|++ ++.+++++++++|||||.+++..+....
T Consensus 107 ~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~~ 140 (257)
T 4hg2_A 107 QAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLTR 140 (257)
T ss_dssp SCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCCB
T ss_pred eehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 999877 4688999999999999999998776543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=135.35 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=111.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
+++ +|||+|||+|..+..+++. +.+++++|+++.+++.++++....+ .++.+.+.|+.+.++++++||+|++
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKG----VKITTVQSNLADFDIVADAWEGIVS 100 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHT----CCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred CCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcC----CceEEEEcChhhcCCCcCCccEEEE
Confidence 456 9999999999999998865 4599999999999999998875443 3789999999988877788999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
.....+..+...+++++.++|+|||.+++.++........ . ... ......+++++
T Consensus 101 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-------~-------~~~-----------~~~~~~~~~~~ 155 (202)
T 2kw5_A 101 IFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYN-------T-------GGP-----------KDLDLLPKLET 155 (202)
T ss_dssp ECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGT-------S-------CCS-----------SSGGGCCCHHH
T ss_pred EhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCC-------C-------CCC-----------CcceeecCHHH
Confidence 6532223567899999999999999999988775442110 0 000 01124689999
Q ss_pred HHHHHHHcCCeEEEEeeec
Q 027517 193 LEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~~ 211 (222)
+.++++ ||++++.....
T Consensus 156 l~~~l~--Gf~v~~~~~~~ 172 (202)
T 2kw5_A 156 LQSELP--SLNWLIANNLE 172 (202)
T ss_dssp HHHHCS--SSCEEEEEEEE
T ss_pred HHHHhc--CceEEEEEEEE
Confidence 999998 99998766543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-21 Score=145.14 Aligned_cols=150 Identities=11% Similarity=0.138 Sum_probs=105.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh--------------hhc-------------
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--------------KAC------------- 86 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--------------~~~------------- 86 (222)
++.+|||+|||+|.....++.. ...+|+++|+|+.+++.+++++.... ...
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 6789999999999954433332 34599999999999999887543210 000
Q ss_pred CCCeeEEeCCCCC-cCC-----CCCceeEEEEcccccC----cccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHH
Q 027517 87 YKNIEWVEGDALD-LPF-----SDCFFDAITMGYGLRN----VVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 156 (222)
Q Consensus 87 ~~~i~~~~~d~~~-~~~-----~~~~~D~v~~~~~l~~----~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~ 156 (222)
...+.++..|+.+ .++ ++++||+|++++++++ ++++..++++++++|||||++++........
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~------- 221 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW------- 221 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE-------
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce-------
Confidence 0014677778877 443 3456999999999999 6678999999999999999999975332110
Q ss_pred HHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 157 EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
+. . .. .......++.+++.++|+++||++++.....
T Consensus 222 --~~-----~-~~-----------~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 222 --YL-----A-GE-----------ARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp --EE-----E-TT-----------EEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred --EE-----c-CC-----------eeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 00 0 00 0001235799999999999999998877655
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=141.33 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=112.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh--------------h------------
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK--------------A------------ 85 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--------------~------------ 85 (222)
..++.+|||+|||+|..+..+++.. . .+|+++|+|+.+++.++++...... .
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 3566799999999999998887652 2 3899999999999999887643210 0
Q ss_pred cCCCe-eEEeCCCCCcCC-CC---CceeEEEEccccc----CcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHH
Q 027517 86 CYKNI-EWVEGDALDLPF-SD---CFFDAITMGYGLR----NVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 156 (222)
Q Consensus 86 ~~~~i-~~~~~d~~~~~~-~~---~~~D~v~~~~~l~----~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~ 156 (222)
...++ .+.+.|+.+... +. ++||+|++..+++ +.+++..+++++.++|||||.+++.+...... +
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-~----- 205 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY-Y----- 205 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-E-----
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce-E-----
Confidence 00127 899999987542 44 7899999999999 66678999999999999999999987543210 0
Q ss_pred HHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 157 EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.. .. .......++.+++.++++++||++++.....
T Consensus 206 ---~~-------~~----------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 ---MI-------GE----------QKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp ---EE-------TT----------EEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ---Ec-------CC----------ccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 00 00 0001235688999999999999999888765
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-20 Score=136.07 Aligned_cols=110 Identities=29% Similarity=0.430 Sum_probs=88.6
Q ss_pred HhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCce
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 107 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (222)
......++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++....+ .++.+.++|+.+++.+ ++|
T Consensus 35 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-~~f 106 (252)
T 1wzn_A 35 KEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERN----LKIEFLQGDVLEIAFK-NEF 106 (252)
T ss_dssp HHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT----CCCEEEESCGGGCCCC-SCE
T ss_pred HHhcccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcC----CceEEEECChhhcccC-CCc
Confidence 3334456789999999999999999875 4689999999999999998875433 4789999999987655 679
Q ss_pred eEEEEccc-ccCc--ccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 108 DAITMGYG-LRNV--VDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 108 D~v~~~~~-l~~~--~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|+|++.+. ++++ ++...++++++++|+|||.+++..+.
T Consensus 107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 99998643 4444 35688999999999999999875543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.7e-20 Score=132.95 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=102.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+|||+|||+|..+..+. .+++++|+++. ++.+.++|+.++++++++||+|+
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~------------------~~~~~~~d~~~~~~~~~~fD~v~ 120 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR------NPVHCFDLASL------------------DPRVTVCDMAQVPLEDESVDVAV 120 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS------------------STTEEESCTTSCSCCTTCEEEEE
T ss_pred cCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC------------------CceEEEeccccCCCCCCCEeEEE
Confidence 4567899999999999987662 48999999986 35678889988887778899999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHH
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 191 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (222)
+..++|+ +++..+++++.++|+|||.+++.++.. ...+.+
T Consensus 121 ~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~---------------------------------------~~~~~~ 160 (215)
T 2zfu_A 121 FCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS---------------------------------------RFEDVR 160 (215)
T ss_dssp EESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG---------------------------------------GCSCHH
T ss_pred Eehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC---------------------------------------CCCCHH
Confidence 9999974 888999999999999999999986442 123778
Q ss_pred HHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 192 DLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 192 ~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
++.++++++||++++.. ...+.+.+++++|
T Consensus 161 ~~~~~l~~~Gf~~~~~~-~~~~~~~~~~~~k 190 (215)
T 2zfu_A 161 TFLRAVTKLGFKIVSKD-LTNSHFFLFDFQK 190 (215)
T ss_dssp HHHHHHHHTTEEEEEEE-CCSTTCEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEe-cCCCeEEEEEEEe
Confidence 99999999999998854 4444555666554
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=135.70 Aligned_cols=156 Identities=13% Similarity=0.048 Sum_probs=113.2
Q ss_pred HHHHHhhC-CCCCCeEEEecCCC---ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 24 RMAVSWSG-AKTGDNVLDVCCGS---GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 24 ~~~~~~~~-~~~~~~vLdiG~G~---G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..++..+. ..+..+|||||||+ |.++..+.+. .++.+|+++|+|+.+++.+++++... .++.++++|+.+
T Consensus 66 ~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~~-----~~v~~~~~D~~~ 139 (274)
T 2qe6_A 66 VRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAKD-----PNTAVFTADVRD 139 (274)
T ss_dssp HHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTTC-----TTEEEEECCTTC
T ss_pred HHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCCC-----CCeEEEEeeCCC
Confidence 33344443 34457999999999 9887766665 46789999999999999999887421 589999999976
Q ss_pred cC-----------CCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccccc
Q 027517 100 LP-----------FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVP 166 (222)
Q Consensus 100 ~~-----------~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (222)
.+ ++..+||+|++..++||+++ +..++++++++|+|||+|++.+...............
T Consensus 140 ~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~-------- 211 (274)
T 2qe6_A 140 PEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARI-------- 211 (274)
T ss_dssp HHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHH--------
T ss_pred chhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHH--------
Confidence 31 22347999999999999986 8999999999999999999998876431111111111
Q ss_pred ccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEE
Q 027517 167 VASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK 206 (222)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 206 (222)
|.... ....+++.+++.+++ .||++++
T Consensus 212 ----------~~~~~-~~~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 212 ----------TRENL-GEGWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp ----------HHHHH-SCCCCBCHHHHHHTT--TTCEECT
T ss_pred ----------HHhcC-CCCccCCHHHHHHHh--CCCeEcc
Confidence 11000 012457999999999 5998775
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-19 Score=127.40 Aligned_cols=119 Identities=16% Similarity=0.077 Sum_probs=98.4
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+..+..++..+...++.+|||+|||+|..+..+++. .+..+++++|+++.+++.++++....+. .++.++++|+.+
T Consensus 26 ~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~ 101 (204)
T 3e05_A 26 QEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNL-MPNGRIFALERNPQYLGFIRDNLKKFVA---RNVTLVEAFAPE 101 (204)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHH-CTTSEEEEEECCHHHHHHHHHHHHHHTC---TTEEEEECCTTT
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeCChhh
Confidence 344456677778888999999999999999999988 4567999999999999999998765443 589999999976
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.....++||+|++..+++ +...+++++.++|+|||++++....
T Consensus 102 ~~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 102 GLDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp TCTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred hhhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecc
Confidence 443336799999988775 6788999999999999999986533
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=132.28 Aligned_cols=151 Identities=14% Similarity=0.097 Sum_probs=108.6
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC----cCC
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD----LPF 102 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----~~~ 102 (222)
++.+...++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++.... .++.++.+|+.+ .++
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~ 140 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANI 140 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTT
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC-----CCeEEEECCCCCccccccc
Confidence 3444566788999999999999999999864 569999999999999998876433 589999999987 555
Q ss_pred CCCceeEEEEcccccCcccH---HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 103 SDCFFDAITMGYGLRNVVDK---RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~---~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
+ ++||+|+ ++++++ ..+++++.+.|+|||.+++. +............
T Consensus 141 ~-~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~~----------------------- 190 (230)
T 1fbn_A 141 V-EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDPK----------------------- 190 (230)
T ss_dssp S-CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCHH-----------------------
T ss_pred C-ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCHH-----------------------
Confidence 5 6899999 344444 77799999999999999886 2211000000000
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCC--eeeeEeee
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAKHYELSGG--LMGNLVAT 221 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~--~~~~~~~~ 221 (222)
.+..+++. +|+++||++++....... ....++++
T Consensus 191 -------~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 191 -------EIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp -------HHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEEEE
T ss_pred -------HhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEEEE
Confidence 01236777 899999999988776543 23345554
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-19 Score=134.36 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=121.2
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+...+++.+. .++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.++++....+. .++.+.++|+.+
T Consensus 96 e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~v~~~~~d~~~ 170 (276)
T 2b3t_A 96 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWFS 170 (276)
T ss_dssp HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTTG
T ss_pred HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEEcchhh
Confidence 334455555554 567799999999999999999875 567999999999999999998765543 479999999987
Q ss_pred cCCCCCceeEEEEcccccCc-------------------------ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhH
Q 027517 100 LPFSDCFFDAITMGYGLRNV-------------------------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTA 154 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~-------------------------~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~ 154 (222)
. .+.++||+|+++..+... .....+++.+.+.|+|||.+++...
T Consensus 171 ~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~---------- 239 (276)
T 2b3t_A 171 A-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG---------- 239 (276)
T ss_dssp G-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC----------
T ss_pred h-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC----------
Confidence 4 335689999998544322 2347789999999999999987521
Q ss_pred HHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 155 IQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
..+.+++.++++++||+.++......|...+++++|
T Consensus 240 --------------------------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 --------------------------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp --------------------------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred --------------------------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 124578899999999999888888888888888775
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=134.14 Aligned_cols=159 Identities=20% Similarity=0.206 Sum_probs=114.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC-----Cc
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD-----CF 106 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~ 106 (222)
..++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.++++... .++.++++|+.+++... .+
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~ 124 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKENTA------ANISYRLLDGLVPEQAAQIHSEIG 124 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHSCC------TTEEEEECCTTCHHHHHHHHHHHC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhCcc------cCceEEECcccccccccccccccC
Confidence 4677899999999999999999873 2899999999999999987621 48999999998864321 24
Q ss_pred eeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH-h
Q 027517 107 FDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS-S 183 (222)
Q Consensus 107 ~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 183 (222)
||+|++..++++++ +...++++++++|||||++++.++................ -.+ . ........ .
T Consensus 125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~~------~-~~~~~~~~~~ 194 (245)
T 3ggd_A 125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYG---QLP------Y-ELLLVMEHGI 194 (245)
T ss_dssp SCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHS---SCC------H-HHHHHHTTTC
T ss_pred ccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCC---CCc------h-hhhhccccCC
Confidence 89999999999998 7899999999999999999999887654322211111100 000 0 00000000 0
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
....++.+++.+++ +||++++.....
T Consensus 195 ~~~~~~~~~~~~~~--aGf~~~~~~~~~ 220 (245)
T 3ggd_A 195 RPGIFTAEDIELYF--PDFEILSQGEGL 220 (245)
T ss_dssp CCCCCCHHHHHHHC--TTEEEEEEECCB
T ss_pred CCCccCHHHHHHHh--CCCEEEeccccc
Confidence 11246899999999 999999866543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.8e-20 Score=138.31 Aligned_cols=145 Identities=14% Similarity=0.066 Sum_probs=111.5
Q ss_pred HhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCce
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 107 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (222)
+.+...++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++....+ .++.+.++|+.+.+. .++|
T Consensus 114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~-~~~f 185 (286)
T 3m70_A 114 DAAKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKEN----LNISTALYDINAANI-QENY 185 (286)
T ss_dssp HHHHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCGGGCCC-CSCE
T ss_pred HHhhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcC----CceEEEEeccccccc-cCCc
Confidence 3333347789999999999999999876 4599999999999999999876543 389999999998766 5789
Q ss_pred eEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 108 DAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 108 D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
|+|+++.+++|++ +...+++++.++|+|||.+++............ ....
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------------------~~~~ 237 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------------------LPFS 237 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------------------SCCS
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------------------CCcc
Confidence 9999999999984 466999999999999999887665443211100 0001
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
..++..++.++++. |+++...+.
T Consensus 238 ~~~~~~~l~~~~~~--~~~~~~~~~ 260 (286)
T 3m70_A 238 FTFAENELKEYYKD--WEFLEYNEN 260 (286)
T ss_dssp CCBCTTHHHHHTTT--SEEEEEECC
T ss_pred ccCCHHHHHHHhcC--CEEEEEEcc
Confidence 24677888888854 988876533
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.9e-20 Score=132.73 Aligned_cols=115 Identities=19% Similarity=0.308 Sum_probs=97.3
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+...+...+...++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++.... +++.+.++|+.+++
T Consensus 39 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~ 110 (216)
T 3ofk_A 39 HTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRW-----SHISWAATDILQFS 110 (216)
T ss_dssp HHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTC-----SSEEEEECCTTTCC
T ss_pred HHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccC-----CCeEEEEcchhhCC
Confidence 3344445566677789999999999999999876 358999999999999999887542 48999999999877
Q ss_pred CCCCceeEEEEcccccCcccH---HHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSDCFFDAITMGYGLRNVVDK---RKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~---~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+.++||+|+++.+++|++++ ..+++++.++|+|||.+++.++.
T Consensus 111 -~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 111 -TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp -CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred -CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 56789999999999999876 57799999999999999987654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=137.73 Aligned_cols=110 Identities=10% Similarity=0.169 Sum_probs=84.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhc---CCCeeEEeCCC------CCc--CC
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC---YKNIEWVEGDA------LDL--PF 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~d~------~~~--~~ 102 (222)
++.+|||+|||+|..+..+++. ...+|+|+|+|+.+++.|+++....+... ..++.+.+.|+ .++ ++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 5789999999999877766654 34689999999999999999865432100 00256778777 222 24
Q ss_pred CCCceeEEEEcccccCc---ccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLRNV---VDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++++||+|+|.+++|+. ++...++++++++|||||.+++.++.
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 55789999999999875 45689999999999999999988765
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-20 Score=137.24 Aligned_cols=101 Identities=32% Similarity=0.324 Sum_probs=87.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. . .+.+.|+.++++++++||+|++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~--------~-~~~~~d~~~~~~~~~~fD~v~~~ 121 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV--------K-NVVEAKAEDLPFPSGAFEAVLAL 121 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC--------S-CEEECCTTSCCSCTTCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC--------C-CEEECcHHHCCCCCCCEEEEEEc
Confidence 6789999999999999999865 4689999999999999998752 1 27889999888777889999998
Q ss_pred ccccCc-ccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 114 YGLRNV-VDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 114 ~~l~~~-~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.++.|+ +++..++++++++|+|||.+++..++.
T Consensus 122 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 122 GDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp SSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred chhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 876666 789999999999999999999987653
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=121.87 Aligned_cols=128 Identities=14% Similarity=0.084 Sum_probs=103.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|.++..+++. . +++++|+|+.+++. . .++.+.++|+.+ +.++++||+|++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~---~---------~~~~~~~~d~~~-~~~~~~fD~i~~ 84 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES---H---------RGGNLVRADLLC-SINQESVDVVVF 84 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT---C---------SSSCEEECSTTT-TBCGGGCSEEEE
T ss_pred CCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc---c---------cCCeEEECChhh-hcccCCCCEEEE
Confidence 45679999999999999999866 3 99999999999987 1 578999999987 455578999999
Q ss_pred cccccCcccH---------HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 113 GYGLRNVVDK---------RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 113 ~~~l~~~~~~---------~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+..+++.++. ...++++.+.+ |||.+++.+...
T Consensus 85 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------------------------------- 126 (170)
T 3q87_B 85 NPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA------------------------------------- 126 (170)
T ss_dssp CCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-------------------------------------
T ss_pred CCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-------------------------------------
Confidence 9988865443 56788888888 999998875331
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEe
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 219 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 219 (222)
.+.+++.++++++||+.+.......+.-.++.
T Consensus 127 ----~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~ 158 (170)
T 3q87_B 127 ----NRPKEVLARLEERGYGTRILKVRKILGETVYI 158 (170)
T ss_dssp ----GCHHHHHHHHHHTTCEEEEEEEEECSSSEEEE
T ss_pred ----CCHHHHHHHHHHCCCcEEEEEeeccCCceEEE
Confidence 24568899999999999988877776555444
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=123.95 Aligned_cols=119 Identities=21% Similarity=0.266 Sum_probs=98.4
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCC--eeEEeCCCC
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN--IEWVEGDAL 98 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~d~~ 98 (222)
...+.+++.+...++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++....+. .+ +.+...|+.
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~ 112 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNL---DNYDIRVVHSDLY 112 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTC---TTSCEEEEECSTT
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCC---CccceEEEECchh
Confidence 44566777777778889999999999999998876 56999999999999999988764432 34 999999988
Q ss_pred CcCCCCCceeEEEEcccccC-cccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 99 DLPFSDCFFDAITMGYGLRN-VVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~-~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
+. .+.++||+|+++.++++ ..+...+++++.++|+|||.+++.+...
T Consensus 113 ~~-~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 113 EN-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp TT-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred cc-cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 73 34568999999998887 3567889999999999999999987653
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-18 Score=123.15 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=93.0
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
..+..++..+...++.+|||+|||+|.++..+++. +.+|+++|+++++++.++++....+.. .++.++++|+.+.
T Consensus 42 ~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~--~~v~~~~~d~~~~ 116 (204)
T 3njr_A 42 PMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLS--PRMRAVQGTAPAA 116 (204)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCTTGG
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCEEEEeCchhhh
Confidence 44456677777888899999999999999999876 568999999999999999987654431 3799999999883
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
....++||+|++...+ +.. +++++.+.|+|||++++....
T Consensus 117 ~~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 117 LADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp GTTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred cccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecC
Confidence 3233579999987754 445 999999999999999886543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-20 Score=133.23 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=102.3
Q ss_pred hhHHHHHHHHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 19 HRIWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 19 ~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
...+...+++.+.. .++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.++++....+ .+++++++|+
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~ 88 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFG----AVVDWAAADG 88 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-----------------------CCHHHH
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhC----CceEEEEcch
Confidence 34555666666655 678899999999999999999984 56799999999999999998875443 1678888888
Q ss_pred CCcCCCC-----CceeEEEEcccccCcccH--------------------------HHHHHHHhcccCCCcEEEEEecCC
Q 027517 98 LDLPFSD-----CFFDAITMGYGLRNVVDK--------------------------RKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 98 ~~~~~~~-----~~~D~v~~~~~l~~~~~~--------------------------~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.+ +++. ++||+|+++..++...+. ..+++++.++|+|||++++.+...
T Consensus 89 ~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 167 (215)
T 4dzr_A 89 IE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH 167 (215)
T ss_dssp HH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT
T ss_pred Hh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 76 3333 789999998766543221 678899999999999954543321
Q ss_pred CCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHH--HcCCeEEEEeeecCCeeeeEeee
Q 027517 147 STQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLAL--EIGFSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~Gf~~~~~~~~~~~~~~~~~~~ 221 (222)
...+++.++++ ++||..++......+...+++++
T Consensus 168 -----------------------------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~ 203 (215)
T 4dzr_A 168 -----------------------------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT 203 (215)
T ss_dssp -----------------------------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred -----------------------------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence 13457788888 99999888888777776666655
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-18 Score=124.86 Aligned_cols=138 Identities=17% Similarity=0.203 Sum_probs=105.3
Q ss_pred CCCCCCeEEEecCC-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CCCCCcee
Q 027517 31 GAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFD 108 (222)
Q Consensus 31 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D 108 (222)
...++.+|||+||| +|.++..+++.. +.+++++|+++.+++.++++....+ .+++++++|+..+ ++++++||
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~fD 125 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNN----SNVRLVKSNGGIIKGVVEGTFD 125 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTT----CCCEEEECSSCSSTTTCCSCEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEeCCchhhhhcccCcee
Confidence 34678899999999 999999999885 5699999999999999999876544 2789999997543 34457899
Q ss_pred EEEEcccccCccc-------------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccc
Q 027517 109 AITMGYGLRNVVD-------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVAS 169 (222)
Q Consensus 109 ~v~~~~~l~~~~~-------------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (222)
+|+++..+++.++ ...+++++.++|+|||++++......
T Consensus 126 ~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------- 183 (230)
T 3evz_A 126 VIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------- 183 (230)
T ss_dssp EEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------
T ss_pred EEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------
Confidence 9999877765433 47889999999999999988643321
Q ss_pred cCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCe
Q 027517 170 GYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGL 214 (222)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 214 (222)
...+++.+.++++||++.......+..
T Consensus 184 ------------------~~~~~~~~~l~~~g~~~~~~~~~~g~~ 210 (230)
T 3evz_A 184 ------------------KLLNVIKERGIKLGYSVKDIKFKVGTR 210 (230)
T ss_dssp ------------------HHHHHHHHHHHHTTCEEEEEEECCCC-
T ss_pred ------------------hHHHHHHHHHHHcCCceEEEEecCCCe
Confidence 123578899999999877665444433
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=123.23 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=95.2
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
.+.++..++..+...++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.++++....+.. .++ ++..|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~-~~~~d~~ 85 (178)
T 3hm2_A 10 KQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVS--DRI-AVQQGAP 85 (178)
T ss_dssp HHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCT--TSE-EEECCTT
T ss_pred HHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCC--CCE-EEecchH
Confidence 34556677777778888899999999999999999875 5679999999999999999887654321 367 8888875
Q ss_pred C-cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 99 D-LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 99 ~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+ ++...++||+|++..++++ ..+++++.+.|+|||.+++.+..
T Consensus 86 ~~~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 86 RAFDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp GGGGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECS
T ss_pred hhhhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeec
Confidence 4 3332378999999999887 67899999999999999987543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=128.92 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=86.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC---CCceeE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS---DCFFDA 109 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~ 109 (222)
.++.+|||+|||+|..+..++.. .++.+|+++|+|+.+++.++++....+. .++.++++|+.+++.+ .++||+
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~fD~ 144 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKIC-FPHLHVTIVDSLNKRITFLEKLSEALQL---ENTTFCHDRAETFGQRKDVRESYDI 144 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEeccHHHhcccccccCCccE
Confidence 46789999999999999999876 3567999999999999999998765543 4799999999887643 468999
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
|++.. +.+...+++.+.++|+|||.+++.
T Consensus 145 V~~~~----~~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 145 VTARA----VARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp EEEEC----CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEec----cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 99976 366789999999999999999875
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-19 Score=129.84 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=106.6
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHH----hcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA----SSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
.++.+...++.+|||+|||+|.++..+++.. ++.+|+++|+|+.+++.+ +++... ...+++.+.++|+.+++
T Consensus 19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~---~~~~~v~~~~~d~~~l~ 94 (218)
T 3mq2_A 19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAK---GGLPNLLYLWATAERLP 94 (218)
T ss_dssp HHHHHHTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGG---TCCTTEEEEECCSTTCC
T ss_pred HHHHhhccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhh---cCCCceEEEecchhhCC
Confidence 3444556778899999999999999999984 677999999999988853 332222 22258999999999988
Q ss_pred CCCCceeEEEEccc---c--cCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHH
Q 027517 102 FSDCFFDAITMGYG---L--RNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEE 176 (222)
Q Consensus 102 ~~~~~~D~v~~~~~---l--~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (222)
++.++ |.|++... + +|++++..++++++++|||||.+++........+..... ......
T Consensus 95 ~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~------------~~~~~~--- 158 (218)
T 3mq2_A 95 PLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEV------------GEHPEP--- 158 (218)
T ss_dssp SCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGG------------TTCCCC---
T ss_pred CCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccccccccccc------------ccCCcc---
Confidence 76665 77664332 2 255677899999999999999998853221100000000 000000
Q ss_pred HHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 177 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
...+..+++..+++++||++.+.....
T Consensus 159 --------~~~~~~~~l~~~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 159 --------TPDSADEWLAPRYAEAGWKLADCRYLE 185 (218)
T ss_dssp --------CHHHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred --------chHHHHHHHHHHHHHcCCCceeeeccc
Confidence 001123568889999999998877654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-18 Score=123.92 Aligned_cols=160 Identities=15% Similarity=0.015 Sum_probs=106.5
Q ss_pred HHHHHHHhh---CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 22 WKRMAVSWS---GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 22 ~~~~~~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
....++..+ ...++.+|||+|||+|.++.++++..++.++|+++|+++.+++...+..... .++.++++|+.
T Consensus 61 la~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-----~nv~~i~~Da~ 135 (232)
T 3id6_C 61 LAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-----PNIFPLLADAR 135 (232)
T ss_dssp HHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-----TTEEEEECCTT
T ss_pred HHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCeEEEEcccc
Confidence 334444433 4778999999999999999999998877889999999998865443332211 58999999987
Q ss_pred CcC---CCCCceeEEEEcccccCcccHHHHH-HHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChh
Q 027517 99 DLP---FSDCFFDAITMGYGLRNVVDKRKAL-EESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLA 174 (222)
Q Consensus 99 ~~~---~~~~~~D~v~~~~~l~~~~~~~~~l-~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (222)
... ...++||+|++..+. ++...++ ..+.+.|||||++++......... ...+
T Consensus 136 ~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d~------------t~~~-------- 192 (232)
T 3id6_C 136 FPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDV------------TKDP-------- 192 (232)
T ss_dssp CGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC-------------------CCS--------
T ss_pred cchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCccc------------CCCH--------
Confidence 642 123679999998654 4555544 556669999999998743221000 0000
Q ss_pred HHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCC--eeeeEeee
Q 027517 175 EEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGG--LMGNLVAT 221 (222)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~--~~~~~~~~ 221 (222)
.-..++..+.|+++||++++....... ....++++
T Consensus 193 ------------~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 193 ------------KEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp ------------SSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEE
T ss_pred ------------HHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEE
Confidence 001134557788899999998877432 34455554
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=125.07 Aligned_cols=128 Identities=17% Similarity=0.100 Sum_probs=104.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+|||+|||+|..+..+++. +..+++++|+++.+++.++++....+. .++.+.+.|+.+.. .++||+|+
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~--~~~fD~i~ 130 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGI---YDIALQKTSLLADV--DGKFDLIV 130 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTC---CCCEEEESSTTTTC--CSCEEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEeccccccC--CCCceEEE
Confidence 457789999999999999998864 345899999999999999998765442 35999999987743 47899999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHH
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 191 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (222)
++.++++ ...+++++.++|+|||.+++.++... +.+
T Consensus 131 ~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------------------~~~ 166 (205)
T 3grz_A 131 ANILAEI---LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------------------QLP 166 (205)
T ss_dssp EESCHHH---HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------------------GHH
T ss_pred ECCcHHH---HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------------------cHH
Confidence 9887765 47789999999999999998654421 346
Q ss_pred HHHHHHHHcCCeEEEEeee
Q 027517 192 DLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 192 ~~~~~l~~~Gf~~~~~~~~ 210 (222)
++.++++++||++++....
T Consensus 167 ~~~~~~~~~Gf~~~~~~~~ 185 (205)
T 3grz_A 167 KIEQALAENSFQIDLKMRA 185 (205)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHcCCceEEeecc
Confidence 7889999999999887754
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.4e-19 Score=129.81 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=114.7
Q ss_pred hHHHHHHHHhhC-CCCCCeEEEecCCC--ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC
Q 027517 20 RIWKRMAVSWSG-AKTGDNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 96 (222)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 96 (222)
+.|...++..+. .....+|||||||+ +..+..+++...++.+|+++|.|+.|++.+++++.... ..++.+++.|
T Consensus 63 r~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~---~~~~~~v~aD 139 (277)
T 3giw_A 63 RDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP---EGRTAYVEAD 139 (277)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS---SSEEEEEECC
T ss_pred HHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC---CCcEEEEEec
Confidence 444455555554 23456999999997 55666666655678899999999999999998875432 1368999999
Q ss_pred CCCcC----CC--CCcee-----EEEEcccccCccc---HHHHHHHHhcccCCCcEEEEEecCCCCCch-hhHHHHHHhh
Q 027517 97 ALDLP----FS--DCFFD-----AITMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFNKSTQPF-TTAIQEWMID 161 (222)
Q Consensus 97 ~~~~~----~~--~~~~D-----~v~~~~~l~~~~~---~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~-~~~~~~~~~~ 161 (222)
+.+.+ .+ .+.|| .|+++.+|||+++ +..+++++++.|+|||+|++.+...+..+. .......+..
T Consensus 140 ~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~ 219 (277)
T 3giw_A 140 MLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAA 219 (277)
T ss_dssp TTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHh
Confidence 98752 01 13344 6889999999987 568999999999999999999887654321 2222222211
Q ss_pred cccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEE
Q 027517 162 NVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK 206 (222)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 206 (222)
.. . ...++|.+++.++|. ||++++
T Consensus 220 ~g------------------~-p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 220 RN------------------M-PMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp TT------------------C-CCCCCCHHHHHHTTT--TSEECT
T ss_pred cC------------------C-CCccCCHHHHHHHhC--CCcccC
Confidence 10 0 124679999999994 999764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-18 Score=128.67 Aligned_cols=108 Identities=14% Similarity=0.182 Sum_probs=91.0
Q ss_pred HhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCce
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 107 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (222)
.+....++.+|||+|||+|.++..++.+. ++++|+++|+++++++.|+++....+. .+++++++|+.+++ +++|
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl---~~v~~v~gDa~~l~--d~~F 189 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGV---DGVNVITGDETVID--GLEF 189 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTC---CSEEEEESCGGGGG--GCCC
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCC---CCeEEEECchhhCC--CCCc
Confidence 45677899999999999998876555443 577999999999999999999865543 58999999998875 5789
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
|+|++... .++...+++++.+.|||||++++.+.
T Consensus 190 DvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 190 DVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp SEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 99998654 57889999999999999999998764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=127.37 Aligned_cols=155 Identities=15% Similarity=0.209 Sum_probs=100.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCC-hhHHHHH---hcchhhhhhhcCCCeeEEeCCCCCcCCC-CCce
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS-KNQLSMA---SSRQDLVSKACYKNIEWVEGDALDLPFS-DCFF 107 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~-~~~~~~~---~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~ 107 (222)
.++.+|||||||+|..+..+++. .++.+|+|+|+| +.+++.| +++....+. +++.+.++|+.+++.. .+.+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~---~~v~~~~~d~~~l~~~~~d~v 98 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGL---SNVVFVIAAAESLPFELKNIA 98 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHT-CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC---SSEEEECCBTTBCCGGGTTCE
T ss_pred CCCCEEEEEeccCcHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC---CCeEEEEcCHHHhhhhccCeE
Confidence 56789999999999999999876 367789999999 6666665 776644332 5899999999987532 2456
Q ss_pred eEEEEcccccCc-----ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 108 DAITMGYGLRNV-----VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 108 D~v~~~~~l~~~-----~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
|.|.+++...+. .+...++++++++|||||.+++.................. +.
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~------~~--------------- 157 (225)
T 3p2e_A 99 DSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGL------PL--------------- 157 (225)
T ss_dssp EEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------------------
T ss_pred EEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCC------CC---------------
Confidence 666665543221 2235789999999999999988443322210000000000 00
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
....++..+++.++++++||++.....+..
T Consensus 158 ~~~~~~~~~el~~~l~~aGf~v~~~~~~~~ 187 (225)
T 3p2e_A 158 LSKAYFLSEQYKAELSNSGFRIDDVKELDN 187 (225)
T ss_dssp CCHHHHHSHHHHHHHHHHTCEEEEEEEECH
T ss_pred CChhhcchHHHHHHHHHcCCCeeeeeecCH
Confidence 000111234699999999999988776653
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-18 Score=122.08 Aligned_cols=105 Identities=15% Similarity=0.061 Sum_probs=80.7
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----CCCCC
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDC 105 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~ 105 (222)
+...++.+|||+|||+|..+..+++..+ .++|+++|+|+.+++...+..... .++.++.+|+... +++ +
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~-~ 125 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIV-E 125 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTC-C
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC-----CCeEEEEcCCCCchhhcccc-c
Confidence 3456788999999999999999998864 569999999999876655443221 4788888998763 333 7
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+||+|+++.. +..+...++++++++|||||++++..
T Consensus 126 ~fD~V~~~~~--~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 126 KVDLIYQDIA--QKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEEecc--ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 8999999732 22334456899999999999998873
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-20 Score=137.60 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=86.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v 110 (222)
.++.+|||||||+|..+..+++.. ..+++++|+++.+++.++++....+ .++.++.+|+.+. ++++++||.|
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~FD~i 132 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVAPTLPDGHFDGI 132 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCC----CceEEEeehHHhhcccccccCCceE
Confidence 567899999999999999988752 3489999999999999999875543 5788888988653 4567789999
Q ss_pred EE-----cccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 111 TM-----GYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 111 ~~-----~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
++ ...++|.++...++++++++|||||++++.
T Consensus 133 ~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred EEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 74 555677888999999999999999999874
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.78 E-value=9e-18 Score=122.20 Aligned_cols=107 Identities=22% Similarity=0.223 Sum_probs=89.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v 110 (222)
.++.+|||+|||+|.++..+++.. ++.+++++|+++.+++.++++....+. .++.++++|+.+++ +++++||+|
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~D~i 115 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV---PNIKLLWVDGSDLTDYFEDGEIDRL 115 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC---SSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCC---CCEEEEeCCHHHHHhhcCCCCCCEE
Confidence 457799999999999999999884 677999999999999999998765432 58999999998866 566789999
Q ss_pred EEcccccCcc--------cHHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNVV--------DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~~--------~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++++...+.. ....+++.+.++|+|||.+++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 116 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 9987654332 12679999999999999998864
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-19 Score=134.48 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=86.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDA 109 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~ 109 (222)
..++.+|||+|||+|..+..+++. ...+++++|+|+.+++.++++....+ .++.++++|+.++ ++++++||+
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~fD~ 131 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHGGGSCTTCEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHhcC----CCeEEEecCHHHhhcccCCCceEE
Confidence 356789999999999999999754 22389999999999999999875433 5799999999887 777789999
Q ss_pred EEE-ccccc----CcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 110 ITM-GYGLR----NVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 110 v~~-~~~l~----~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|++ .+.++ +..+...++++++++|||||++++.+..
T Consensus 132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred EEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 999 55541 2233457899999999999999886543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=142.53 Aligned_cols=125 Identities=19% Similarity=0.175 Sum_probs=101.2
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh---hcCCCeeEEeCCC
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK---ACYKNIEWVEGDA 97 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~d~ 97 (222)
.+...+.+.+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++..... ....++.++++|+
T Consensus 708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa 787 (950)
T 3htx_A 708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI 787 (950)
T ss_dssp HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence 3445566666666788999999999999999998743446999999999999999986543211 1225799999999
Q ss_pred CCcCCCCCceeEEEEcccccCcccHH--HHHHHHhcccCCCcEEEEEecCC
Q 027517 98 LDLPFSDCFFDAITMGYGLRNVVDKR--KALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 98 ~~~~~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.++++..++||+|++..+++|+++.. .+++++.++|||| .+++.+++.
T Consensus 788 ~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 788 LEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp TSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred HhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 99888778999999999999998754 5899999999999 877777654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=122.41 Aligned_cols=109 Identities=20% Similarity=0.273 Sum_probs=85.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCceeEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAI 110 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v 110 (222)
..++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+. .++.+++.+...++ ..+++||+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~~~~~l~~~~~~~fD~v 93 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI---ENTELILDGHENLDHYVREPIRAA 93 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC---CCEEEEESCGGGGGGTCCSCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCcHHHHHhhccCCcCEE
Confidence 457889999999999999999976 56999999999999999998865443 58999998877643 345789999
Q ss_pred EEccc-ccC-------c-ccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 111 TMGYG-LRN-------V-VDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 111 ~~~~~-l~~-------~-~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
+++.. +++ . .+...+++++.++|||||.+++..+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 94 IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp EEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred EEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 98733 222 1 345678899999999999999887653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-18 Score=123.45 Aligned_cols=107 Identities=25% Similarity=0.379 Sum_probs=91.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|..+..+++. +.. +++++|+++.+++.++++.... +++.+.+.|+.++++++++||+|++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~-~~~-~v~~~D~s~~~~~~a~~~~~~~-----~~i~~~~~d~~~~~~~~~~fD~v~~ 113 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLG-GFP-NVTSVDYSSVVVAAMQACYAHV-----PQLRWETMDVRKLDFPSASFDVVLE 113 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHT-TCC-CEEEEESCHHHHHHHHHHTTTC-----TTCEEEECCTTSCCSCSSCEEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHc-CCC-cEEEEeCCHHHHHHHHHhcccC-----CCcEEEEcchhcCCCCCCcccEEEE
Confidence 56789999999999999999877 232 8999999999999999886531 5899999999988777788999999
Q ss_pred cccccCcc---------------cHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 113 GYGLRNVV---------------DKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 113 ~~~l~~~~---------------~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
..+++++. +...+++++.++|+|||.+++.++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 114 KGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp ESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 88886553 56889999999999999999987664
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=130.87 Aligned_cols=111 Identities=21% Similarity=0.319 Sum_probs=90.8
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh-hhhcCCCeeEEeCCCCCcCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~~~ 103 (222)
.+...+...++.+|||+|||+|..+..+++.+.++.+++++|+++.+++.++++.... + ..++.+.++|+.+ +++
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~-~~~ 176 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---IGNVRTSRSDIAD-FIS 176 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---CTTEEEECSCTTT-CCC
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECchhc-cCc
Confidence 4555566778899999999999999999987556779999999999999999987544 3 2589999999987 455
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+++||+|++ +.+++..+++++.+.|+|||++++.+.
T Consensus 177 ~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 177 DQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp SCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred CCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 578999998 566778899999999999999998763
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=123.52 Aligned_cols=114 Identities=22% Similarity=0.439 Sum_probs=92.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCceeE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDA 109 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~ 109 (222)
...++.+|||+|||+|..+..+++.+++..+++++|+++.+++.++++....+.. .++.++++|+.+++ ..+++||+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI--DRVTLIKDGHQNMDKYIDCPVKA 96 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG--GGEEEECSCGGGGGGTCCSCEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CCeEEEECCHHHHhhhccCCceE
Confidence 4467889999999999999999998766679999999999999999987654321 47999999998765 45578999
Q ss_pred EEEcccccC---------cccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 110 ITMGYGLRN---------VVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 110 v~~~~~l~~---------~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
|+++..+.. ..+...+++++.++|+|||++++..+..
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 998876511 1234679999999999999999887654
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-18 Score=123.15 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=89.8
Q ss_pred HHHHHHHHhhCCC---CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 21 IWKRMAVSWSGAK---TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 21 ~~~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
.+.+.+.+.+... ++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.++++....+. .++.+.++|+
T Consensus 49 ~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~ 124 (207)
T 1jsx_A 49 MLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKL---ENIEPVQSRV 124 (207)
T ss_dssp HHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTC---SSEEEEECCT
T ss_pred HHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC---CCeEEEecch
Confidence 3444444444322 47799999999999999999885 567999999999999999988765432 3599999999
Q ss_pred CCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 98 LDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 98 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.+.+ +.++||+|+++. +.+...+++.+.++|+|||.+++.
T Consensus 125 ~~~~-~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 125 EEFP-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp TTSC-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred hhCC-ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 8865 346899999754 356788999999999999999886
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=132.96 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=89.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh----hcCCCeeEEeCCCCCcC----CC-
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK----ACYKNIEWVEGDALDLP----FS- 103 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~d~~~~~----~~- 103 (222)
.++.+|||+|||+|..+..+++. +..+++++|+|+.+++.++++...... ....++.+++.|+.+.+ ++
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 36779999999999999998874 456999999999999999988654310 01137899999998865 43
Q ss_pred -CCceeEEEEcccccCc----ccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 -DCFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 -~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.++||+|+++.++|+. ++...+++++.++|+|||.+++..+..
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 111 PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 3489999999999887 345789999999999999999987653
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-18 Score=126.45 Aligned_cols=113 Identities=19% Similarity=0.362 Sum_probs=95.2
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+...+...++.+|||+|||+|.++..+++.+++..+++++|+++++++.++++....+.. .++++.+.|+.+. ++
T Consensus 83 ~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~-~~ 159 (255)
T 3mb5_A 83 ALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD--DRVTIKLKDIYEG-IE 159 (255)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT--TTEEEECSCGGGC-CC
T ss_pred HHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC--CceEEEECchhhc-cC
Confidence 45666777888999999999999999999998767789999999999999999987655432 3599999999864 55
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.++||+|++ +.+++..+++++.+.|+|||.+++..+
T Consensus 160 ~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 160 EENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp CCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEEC
Confidence 678999998 456777889999999999999988653
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.3e-18 Score=125.47 Aligned_cols=113 Identities=21% Similarity=0.341 Sum_probs=95.9
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh-hhhcCCCeeEEeCCCCCcCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~~ 102 (222)
..++..+...++.+|||+|||+|.++..+++.+++..+++++|+++.+++.++++.... + ..++.+...|+.+.++
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~~~~ 162 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLGKLEEAEL 162 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEESCGGGCCC
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEECchhhcCC
Confidence 45666677788999999999999999999998766779999999999999999987554 3 2589999999988766
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
++++||+|++ +.+++..+++++.++|+|||.+++.++
T Consensus 163 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 163 EEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp CTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 6678999998 355667889999999999999998764
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-17 Score=120.26 Aligned_cols=104 Identities=24% Similarity=0.218 Sum_probs=84.1
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCce
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFF 107 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~ 107 (222)
...++.+|||+|||+|.++..+++.+++..+++++|+++.+++.++++.... +++.++++|+.+.. ...++|
T Consensus 70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~ 144 (227)
T 1g8a_A 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTCCCE
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-----CCCEEEEccCCCcchhhcccCCc
Confidence 3567889999999999999999988766679999999999999888776433 48999999998732 123579
Q ss_pred eEEEEcccccCcccH-HHHHHHHhcccCCCcEEEEE
Q 027517 108 DAITMGYGLRNVVDK-RKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 108 D~v~~~~~l~~~~~~-~~~l~~~~~~l~~gG~l~i~ 142 (222)
|+|++... .++. ..+++++.++|||||.+++.
T Consensus 145 D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 145 DVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 99998665 2333 34599999999999999887
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=125.83 Aligned_cols=108 Identities=21% Similarity=0.148 Sum_probs=84.7
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---CCCCC
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDC 105 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~ 105 (222)
.+...++.+|||+|||+|.++..+++.+++..+++++|+++.+++.+.+..... .++.++++|+.+. +...+
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-----TNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-----TTEEEECSCTTCGGGGGGGCC
T ss_pred eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-----CCeEEEEcccCChhhhcccCC
Confidence 345667889999999999999999998756679999999998877766655332 4899999999873 33457
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+||+|++... .......++.++.+.|||||.+++..
T Consensus 147 ~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 147 MVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp CEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8999999655 22233556888999999999998853
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.5e-18 Score=128.73 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=110.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh-hhcCCCeeEEeCCCCCcCC--CCCcee
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-KACYKNIEWVEGDALDLPF--SDCFFD 108 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~d~~~~~~--~~~~~D 108 (222)
.+++.+|||+|||+|..+..+++. .+..+++++|+++.+++.+++++.... ....++++++.+|+.+... +.++||
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD 171 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRH-GTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYD 171 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCcee
Confidence 356689999999999999999976 345699999999999999998863211 1112689999999887542 357899
Q ss_pred EEEEcccccCcccH----HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhH
Q 027517 109 AITMGYGLRNVVDK----RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 184 (222)
Q Consensus 109 ~v~~~~~l~~~~~~----~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (222)
+|++....+..+.. ..++++++++|+|||.+++....... .
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~----~------------------------------- 216 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL----D------------------------------- 216 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT----C-------------------------------
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc----c-------------------------------
Confidence 99997765543332 68899999999999999886432100 0
Q ss_pred hhcCCHHHHHHHHHHcCCeEEEEeee-----cCCeeeeEeeeC
Q 027517 185 REFLTGKDLEKLALEIGFSRAKHYEL-----SGGLMGNLVATR 222 (222)
Q Consensus 185 ~~~~~~~~~~~~l~~~Gf~~~~~~~~-----~~~~~~~~~~~k 222 (222)
.....++.+.++++||..+..... +.+.|...+|+|
T Consensus 217 --~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 217 --LELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp --HHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred --hHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEEEEeC
Confidence 012457888999999998876654 256777777764
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=124.40 Aligned_cols=139 Identities=16% Similarity=0.216 Sum_probs=106.6
Q ss_pred HHHhhCCC-CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--C
Q 027517 26 AVSWSGAK-TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--F 102 (222)
Q Consensus 26 ~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~ 102 (222)
+..+.... ++.+|||+|||+|..+..+++.. + .+++++|+++.+++.++++....+.. .++.++++|+.+.+ +
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~-~-~~v~gvDi~~~~~~~a~~n~~~~~~~--~~v~~~~~D~~~~~~~~ 115 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT-K-AKIVGVEIQERLADMAKRSVAYNQLE--DQIEIIEYDLKKITDLI 115 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTC-C-CEEEEECCSHHHHHHHHHHHHHTTCT--TTEEEECSCGGGGGGTS
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhc-C-CcEEEEECCHHHHHHHHHHHHHCCCc--ccEEEEECcHHHhhhhh
Confidence 34455666 78899999999999999999873 3 39999999999999999988655432 47999999998865 4
Q ss_pred CCCceeEEEEcccccCc--------------------ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhc
Q 027517 103 SDCFFDAITMGYGLRNV--------------------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDN 162 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~--------------------~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~ 162 (222)
+.++||+|+++..+... .+...+++.+.++|+|||+++++...
T Consensus 116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------- 178 (259)
T 3lpm_A 116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP----------------- 178 (259)
T ss_dssp CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-----------------
T ss_pred ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-----------------
Confidence 46789999998665433 22457899999999999999885321
Q ss_pred ccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 163 VVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
....++...+++.||........
T Consensus 179 -------------------------~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 -------------------------ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -------------------------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred -------------------------HHHHHHHHHHHHCCCceEEEEEe
Confidence 13456778888899988766544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=121.35 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=87.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v 110 (222)
.++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.++++....+. .++.++++|+.+++ +++++||.|
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~---~nv~~~~~d~~~l~~~~~~~~~d~v 112 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEA---QNVKLLNIDADTLTDVFEPGEVKRV 112 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCC---SSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCC---CCEEEEeCCHHHHHhhcCcCCcCEE
Confidence 456799999999999999999884 677999999999999999988755432 58999999998864 566789999
Q ss_pred EEcccccCccc--------HHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++++...+... ...+++++.++|+|||.+++..
T Consensus 113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred EEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 98765443321 3678999999999999998864
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.1e-18 Score=120.39 Aligned_cols=122 Identities=14% Similarity=0.073 Sum_probs=96.7
Q ss_pred HHHHHHHHhhCC---CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 21 IWKRMAVSWSGA---KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 21 ~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
.....+...+.. .++.+|||+|||+|..+..+++. ...+++++|+++.+++.++++....+. .+++++++|+
T Consensus 28 ~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~ 102 (189)
T 3p9n_A 28 RVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGL---SGATLRRGAV 102 (189)
T ss_dssp HHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTC---SCEEEEESCH
T ss_pred HHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCC---CceEEEEccH
Confidence 333444444432 56789999999999999987764 345899999999999999998865543 4899999999
Q ss_pred CCcC--CCCCceeEEEEcccccCc-ccHHHHHHHHhc--ccCCCcEEEEEecCCC
Q 027517 98 LDLP--FSDCFFDAITMGYGLRNV-VDKRKALEESFR--VLKPGSRISVLDFNKS 147 (222)
Q Consensus 98 ~~~~--~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~--~l~~gG~l~i~~~~~~ 147 (222)
.+.. .+.++||+|+++.++++. ++...+++.+.+ +|+|||.+++......
T Consensus 103 ~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 103 AAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp HHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred HHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 8753 335789999999988875 678889999998 9999999999776543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=123.60 Aligned_cols=137 Identities=21% Similarity=0.219 Sum_probs=107.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+|||+|||+|.++..+++. + .+++++|+++.+++.++++....+. .+.+..+|+.+. ++.++||+|+
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~----~v~~~~~d~~~~-~~~~~fD~Vv 189 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGV----RPRFLEGSLEAA-LPFGPFDLLV 189 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTC----CCEEEESCHHHH-GGGCCEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCC----cEEEEECChhhc-CcCCCCCEEE
Confidence 457789999999999999988875 3 3999999999999999998765432 288888888763 3346799999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHH
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 191 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (222)
++...+ ....++..+.+.|+|||++++...... +.+
T Consensus 190 ~n~~~~---~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------------------~~~ 225 (254)
T 2nxc_A 190 ANLYAE---LHAALAPRYREALVPGGRALLTGILKD-----------------------------------------RAP 225 (254)
T ss_dssp EECCHH---HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------------------GHH
T ss_pred ECCcHH---HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------------------CHH
Confidence 976544 346789999999999999998654321 246
Q ss_pred HHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 192 DLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 192 ~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
++.+.++++||++++..... .|..++++|
T Consensus 226 ~v~~~l~~~Gf~~~~~~~~~--~W~~l~~~k 254 (254)
T 2nxc_A 226 LVREAMAGAGFRPLEEAAEG--EWVLLAYGR 254 (254)
T ss_dssp HHHHHHHHTTCEEEEEEEET--TEEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEeccC--CeEEEEEEC
Confidence 88899999999999877543 466677765
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-18 Score=126.73 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=97.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC-CCcCCC-CCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLPFS-DCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~-~~~~D~v 110 (222)
.++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++. +++.++++|+ ..++++ +++||+|
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~~~fD~v 115 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARANA--------PHADVYEWNGKGELPAGLGAPFGLI 115 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHC--------TTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhC--------CCceEEEcchhhccCCcCCCCEEEE
Confidence 56789999999999999999876 469999999999999999873 5899999999 456666 7889999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCH
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (222)
+++ .++..+++++.++|||||.++... ...+.
T Consensus 116 ~~~------~~~~~~l~~~~~~LkpgG~l~~~~------------------------------------------~~~~~ 147 (226)
T 3m33_A 116 VSR------RGPTSVILRLPELAAPDAHFLYVG------------------------------------------PRLNV 147 (226)
T ss_dssp EEE------SCCSGGGGGHHHHEEEEEEEEEEE------------------------------------------SSSCC
T ss_pred EeC------CCHHHHHHHHHHHcCCCcEEEEeC------------------------------------------CcCCH
Confidence 997 356778899999999999998110 12355
Q ss_pred HHHHHHHHHcCCeEEEEeee
Q 027517 191 KDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 191 ~~~~~~l~~~Gf~~~~~~~~ 210 (222)
+++.+.++++||+++.....
T Consensus 148 ~~~~~~l~~~Gf~~~~~~~~ 167 (226)
T 3m33_A 148 PEVPERLAAVGWDIVAEDHV 167 (226)
T ss_dssp THHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEee
Confidence 67889999999998776543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=123.99 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=94.5
Q ss_pred chhhHHHHHHHHhh------CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCe
Q 027517 17 GQHRIWKRMAVSWS------GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 90 (222)
Q Consensus 17 ~~~~~~~~~~~~~~------~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i 90 (222)
+....|.+.+.... ...++.+|||+|||+|..+..++... ++.+|+++|+++.+++.++++....+. .++
T Consensus 57 ~~~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l---~~v 132 (249)
T 3g89_A 57 GEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGL---KGA 132 (249)
T ss_dssp CHHHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC---SSE
T ss_pred CHHHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC---Cce
Confidence 44556655554432 12457899999999999999999875 677999999999999999998876543 469
Q ss_pred eEEeCCCCCcCCC---CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 91 EWVEGDALDLPFS---DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 91 ~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+++++|+++++.. .++||+|++..+ .+...+++.+.++|||||++++..
T Consensus 133 ~~~~~d~~~~~~~~~~~~~fD~I~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 133 RALWGRAEVLAREAGHREAYARAVARAV----APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp EEEECCHHHHTTSTTTTTCEEEEEEESS----CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEECcHHHhhcccccCCCceEEEECCc----CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 9999999886542 368999999653 466889999999999999998754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.6e-18 Score=125.13 Aligned_cols=116 Identities=11% Similarity=-0.040 Sum_probs=89.0
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+...+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.++++.... .+.....++..
T Consensus 31 ~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~ 101 (261)
T 3iv6_A 31 PSDRENDIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR------CVTIDLLDITA 101 (261)
T ss_dssp CCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTS
T ss_pred HHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc------cceeeeeeccc
Confidence 345567777788888999999999999999999876 469999999999999999886422 12222222211
Q ss_pred --cCCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecC
Q 027517 100 --LPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 100 --~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.....++||+|+++.+++|+. +...+++++.++| |||++++....
T Consensus 102 ~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 102 EIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp CCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred ccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 111246899999999999884 5677999999999 99999987654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-18 Score=118.78 Aligned_cols=105 Identities=10% Similarity=0.120 Sum_probs=86.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
++..+|||+|||+|.++..++.. .++.+|+++|+|+.+++.+++++...+.. .++.+ .|.... .+.++||+|++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~-~p~a~~~A~Di~~~~leiar~~~~~~g~~--~~v~~--~d~~~~-~~~~~~DvVLa 121 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNE-NEKIIYHAYDIDRAEIAFLSSIIGKLKTT--IKYRF--LNKESD-VYKGTYDVVFL 121 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCS-SCCCEEEEECSCHHHHHHHHHHHHHSCCS--SEEEE--ECCHHH-HTTSEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ccEEE--eccccc-CCCCCcChhhH
Confidence 56779999999999999999877 46779999999999999999998765432 24555 565543 34578999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..++|++++....+.++.+.|+|||.++-.+
T Consensus 122 ~k~LHlL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 122 LKMLPVLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp ETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999777778889999999999886554
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-17 Score=115.29 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=92.7
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
......+...+...++.+|||+|||+|..+..+++ +..+++++|+++.+++.++++....+. +++.++++|+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~~ 94 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNI---KNCQIIKGRAED 94 (183)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTC---CSEEEEESCHHH
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCC---CcEEEEECCccc
Confidence 44456677777777888999999999999999986 466999999999999999998765432 479999999887
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
++++++||+|++..+ .+...+++.+.+. |||.+++...
T Consensus 95 -~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 95 -VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp -HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred -cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEec
Confidence 455568999999887 5678889999988 9999998764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=117.20 Aligned_cols=116 Identities=22% Similarity=0.302 Sum_probs=93.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
...+..+...+...++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++....+.. .++.+.+.|+.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~ 93 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLG--DNVTLMEGDAPE 93 (192)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCC--TTEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCC--cceEEEecCHHH
Confidence 4445666777778888999999999999999998763 69999999999999999887554321 478999999876
Q ss_pred cCCCC-CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 100 LPFSD-CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 ~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+.+. ++||+|++..++++ ...+++.+.++|+|||.+++...
T Consensus 94 -~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 94 -ALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp -HHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -hcccCCCCCEEEECCchHH---HHHHHHHHHHhcCCCcEEEEEec
Confidence 2222 57999999887654 57889999999999999988654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-18 Score=131.65 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=98.0
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh----h-hhc-CCCeeEEeC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV----S-KAC-YKNIEWVEG 95 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~----~-~~~-~~~i~~~~~ 95 (222)
....++..+...++.+|||||||+|..+..++... +..+++|+|+++.+++.|++..... . .+. ..+++++++
T Consensus 161 ~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 161 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 34556677788899999999999999999998874 3336999999999999998754221 0 111 157999999
Q ss_pred CCCCcCCCC--CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 96 DALDLPFSD--CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 96 d~~~~~~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
|+.++++.+ ..+|+|+++..+ +.++....|.++.+.|||||++++.+...+.
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~ 293 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAPL 293 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred cccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence 999876542 369999998776 4578888999999999999999998776544
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.6e-17 Score=121.75 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=107.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|.++..+++.. .. +|+++|+++.+++.++++....+.. .+++++++|+.++.. .++||+|++
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~-~~-~V~~vD~s~~~~~~a~~n~~~n~~~--~~v~~~~~D~~~~~~-~~~fD~Vi~ 198 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYG-KA-KVIAIEKDPYTFKFLVENIHLNKVE--DRMSAYNMDNRDFPG-ENIADRILM 198 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHT-CC-EEEEECCCHHHHHHHHHHHHHTTCT--TTEEEECSCTTTCCC-CSCEEEEEE
T ss_pred CCCCEEEEecccCCHHHHHHHHhC-CC-EEEEEECCHHHHHHHHHHHHHcCCC--ceEEEEECCHHHhcc-cCCccEEEE
Confidence 568899999999999999999873 32 7999999999999999987655432 458999999998765 578999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
... .....+++.+.++|+|||.+++.+....... .....++
T Consensus 199 ~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----------------------------------~~~~~~~ 239 (278)
T 2frn_A 199 GYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------------------PREPFET 239 (278)
T ss_dssp CCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------------------TTTTHHH
T ss_pred CCc----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc-----------------------------------cccHHHH
Confidence 654 2346688899999999999998765531100 0123467
Q ss_pred HHHHHHHcCCeEEE-----EeeecCCeee
Q 027517 193 LEKLALEIGFSRAK-----HYELSGGLMG 216 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~-----~~~~~~~~~~ 216 (222)
+.+.++++||++.. +..+..+.+.
T Consensus 240 i~~~~~~~G~~~~~~~~~~v~~~~p~~~h 268 (278)
T 2frn_A 240 FKRITKEYGYDVEKLNELKIKRYAPGVWH 268 (278)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEETTTEEE
T ss_pred HHHHHHHcCCeeEEeeeEEEEecCCCceE
Confidence 78999999999876 5555555544
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=124.47 Aligned_cols=113 Identities=23% Similarity=0.320 Sum_probs=93.4
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..++..+...++.+|||+|||+|.++..+++.+++..+++++|+++.+++.++++....+.. .++.+...|+.+. ++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~-~~ 178 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI--ERVTIKVRDISEG-FD 178 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG--GGEEEECCCGGGC-CS
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC--CCEEEEECCHHHc-cc
Confidence 34556667788899999999999999999988666779999999999999999987654321 4789999998875 45
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.++||+|++ +.+++..+++++.++|+|||.+++.+.
T Consensus 179 ~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 179 EKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp CCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred CCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 568999998 346667889999999999999988753
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=131.34 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=91.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++....+ .++++++.|+.+...+.++||+|++
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~----~~v~~~~~D~~~~~~~~~~fD~Ii~ 304 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANA----LKAQALHSDVDEALTEEARFDIIVT 304 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTT----CCCEEEECSTTTTSCTTCCEEEEEE
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEcchhhccccCCCeEEEEE
Confidence 46779999999999999999976 4599999999999999999886544 3589999999987665578999999
Q ss_pred cccccC-----cccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 113 GYGLRN-----VVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 113 ~~~l~~-----~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+.++++ ..+...+++++.+.|+|||.++++...
T Consensus 305 npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 305 NPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred CCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 999987 456788999999999999999987543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=120.78 Aligned_cols=120 Identities=9% Similarity=0.131 Sum_probs=94.6
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCC-
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPF- 102 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~- 102 (222)
.+.......++.+|||+|||+|..+..+++.++++.+|+++|+++.+++.+++++...+.. .+++++++|+.+ ++.
T Consensus 49 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~l~~~ 126 (221)
T 3u81_A 49 IMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ--DKVTILNGASQDLIPQL 126 (221)
T ss_dssp HHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG--GGEEEEESCHHHHGGGT
T ss_pred HHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC--CceEEEECCHHHHHHHH
Confidence 3333444456789999999999999999987655789999999999999999988765432 469999999865 222
Q ss_pred C----CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 103 S----DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 103 ~----~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
+ .++||+|++....++..+....++.+ ++|+|||.+++.+...+
T Consensus 127 ~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~ 174 (221)
T 3u81_A 127 KKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVP 174 (221)
T ss_dssp TTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCC
T ss_pred HHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCc
Confidence 1 26899999998887777666778888 99999999988766543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-17 Score=118.23 Aligned_cols=113 Identities=17% Similarity=0.096 Sum_probs=94.9
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.....+.+.+...++.+|||+|||+|..+..+++. ..+++++|+++.+++.++++....+. .++.+..+|+.+.
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~ 137 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDL---HNVSTRHGDGWQG 137 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCC---CceEEEECCcccC
Confidence 33455666777788999999999999999999987 46999999999999999998765432 4799999999886
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
..+.++||+|++..+++++++ .+.+.|+|||++++....
T Consensus 138 ~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 138 WQARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CGGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred CccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 555678999999999999886 578899999999887665
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=123.62 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=84.4
Q ss_pred CCCeEEEecCCCCh----hHHHHHHHhCC---CCcEEEEeCChhHHHHHhcchhhhh-----------------------
Q 027517 34 TGDNVLDVCCGSGD----LSFLLSEQVGS---QGKVIGLDFSKNQLSMASSRQDLVS----------------------- 83 (222)
Q Consensus 34 ~~~~vLdiG~G~G~----~~~~l~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~----------------------- 83 (222)
++.+|+|+|||+|. ++..+++.++. +.+|+|+|+|+.+++.|++......
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45699999999998 44445555432 3589999999999999998642100
Q ss_pred -----hhcCCCeeEEeCCCCCcCCC-CCceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEE
Q 027517 84 -----KACYKNIEWVEGDALDLPFS-DCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 84 -----~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~ 142 (222)
.....++.+.+.|+.+.+++ .++||+|+|.++++|+++. .++++++++.|+|||+|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 00113799999999886554 4689999999999999654 78999999999999999873
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.5e-17 Score=116.49 Aligned_cols=141 Identities=16% Similarity=0.042 Sum_probs=108.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
+++.+|+|+|||+|.++..+++. ++..+|+++|+++.+++.|+++....+.. .++++..+|..+...+.++||+|+.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~--~~I~~~~gD~l~~~~~~~~~D~Ivi 96 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLT--SKIDVRLANGLSAFEEADNIDTITI 96 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCT--TTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECchhhccccccccCEEEE
Confidence 56789999999999999999987 45568999999999999999998776543 5799999999886544346999886
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
.+... .-...++....+.|+++|++++... ...+.
T Consensus 97 aGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------------------------~~~~~ 131 (230)
T 3lec_A 97 CGMGG--RLIADILNNDIDKLQHVKTLVLQPN-------------------------------------------NREDD 131 (230)
T ss_dssp EEECH--HHHHHHHHHTGGGGTTCCEEEEEES-------------------------------------------SCHHH
T ss_pred eCCch--HHHHHHHHHHHHHhCcCCEEEEECC-------------------------------------------CChHH
Confidence 55433 2356788889999999999987532 13468
Q ss_pred HHHHHHHcCCeEEEEeee--cCCeeeeEeee
Q 027517 193 LEKLALEIGFSRAKHYEL--SGGLMGNLVAT 221 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~--~~~~~~~~~~~ 221 (222)
++++|.+.||.+++..-. .+..+.++.++
T Consensus 132 lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 132 LRKWLAANDFEIVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp HHHHHHHTTEEEEEEEEEEC--CEEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEEEEECCEEEEEEEEE
Confidence 889999999999886633 34455555554
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-17 Score=126.31 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=94.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+++.+.+.....++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.++++....+.. +++.++++|+.+
T Consensus 50 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~ 124 (340)
T 2fyt_A 50 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRLNKLE--DTITLIKGKIEE 124 (340)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHHTTCT--TTEEEEESCTTT
T ss_pred HHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHHcCCC--CcEEEEEeeHHH
Confidence 345566666666678889999999999999988876 2 34899999996 999998887654432 589999999999
Q ss_pred cCCCCCceeEEEEcc---cccCcccHHHHHHHHhcccCCCcEEE
Q 027517 100 LPFSDCFFDAITMGY---GLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~---~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
++++.++||+|++.. .+.+..+...+++.+.++|||||.++
T Consensus 125 ~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 125 VHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 887777899999876 45555677889999999999999987
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-16 Score=123.20 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=98.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
......++......++.+|||+|||+|.++..++...++..+++|+|+++.+++.+++++...+. .++++.+.|+.+
T Consensus 189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~---~~i~~~~~D~~~ 265 (354)
T 3tma_A 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL---SWIRFLRADARH 265 (354)
T ss_dssp HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC---TTCEEEECCGGG
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC---CceEEEeCChhh
Confidence 44555666777778888999999999999999998754567999999999999999999866543 379999999999
Q ss_pred cCCCCCceeEEEEcccccCccc--------HHHHHHHHhcccCCCcEEEEEe
Q 027517 100 LPFSDCFFDAITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++.+.++||+|+++..+..... ...+++.+++.|+|||.+++..
T Consensus 266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 8766667999999877654321 3678999999999999998864
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=123.55 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=101.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---CCC---CCce
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFS---DCFF 107 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~---~~~~ 107 (222)
++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.++++....+.. .++.++++|+.+. +++ +++|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLS--DLIKVVKVPQKTLLMDALKEESEIIY 141 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCC--ccEEEEEcchhhhhhhhhhcccCCcc
Confidence 56799999999999999988875 4579999999999999999987654432 3599999997652 333 2579
Q ss_pred eEEEEcccccCcc-c--------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCC
Q 027517 108 DAITMGYGLRNVV-D--------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG 172 (222)
Q Consensus 108 D~v~~~~~l~~~~-~--------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (222)
|+|+++..+++.. + ...++.++.++|||||.+.+.+. ................
T Consensus 142 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~------~~~~~~~~l~~~g~~~------ 209 (254)
T 2h00_A 142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKR------IIHDSLQLKKRLRWYS------ 209 (254)
T ss_dssp SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHH------HHHHHHHHGGGBSCEE------
T ss_pred cEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHH------HHHHHHhcccceEEEE------
Confidence 9999987766443 1 12456788999999998866421 1111111110000000
Q ss_pred hhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCC
Q 027517 173 LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
.......+.+++.++++++||+.++......|
T Consensus 210 ---------~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~~g 241 (254)
T 2h00_A 210 ---------CMLGKKCSLAPLKEELRIQGVPKVTYTEFCQG 241 (254)
T ss_dssp ---------EEESSTTSHHHHHHHHHHTTCSEEEEEEEEET
T ss_pred ---------ECCCChhHHHHHHHHHHHcCCCceEEEEEecC
Confidence 00011224478999999999999988777654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-16 Score=117.06 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=89.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCCC--CCce
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFS--DCFF 107 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~--~~~~ 107 (222)
...++.+|||+|||+|..+..+++.++++.+++++|+++.+++.+++++...+.. .++.+.++|+.+ ++.. .++|
T Consensus 60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~--~~v~~~~~d~~~~l~~~~~~~~f 137 (248)
T 3tfw_A 60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD--QRVTLREGPALQSLESLGECPAF 137 (248)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHTCCSCCCC
T ss_pred hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHhcCCCCCe
Confidence 4456789999999999999999988754779999999999999999988655432 479999999876 3322 2489
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|+|++... .++....++++.++|||||.+++.+..
T Consensus 138 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 138 DLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp SEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred EEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 99998653 456678999999999999999886544
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=122.01 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=93.2
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+...+...++.+|||+|||+|..+..+++.+++.++++++|+++.+++.++++....+. .++.++++|+.+++...
T Consensus 109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~~~~~ 185 (315)
T 1ixk_A 109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHIGELN 185 (315)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGGGGGC
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CeEEEEECChhhccccc
Confidence 344556778889999999999999999999875567999999999999999999876543 47999999998865445
Q ss_pred CceeEEEEccc------ccCccc----------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 105 CFFDAITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 105 ~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++||+|++... +++.++ ...+++++.+.|||||++++.+.+
T Consensus 186 ~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 186 VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 67999998533 332222 158899999999999999887654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=120.35 Aligned_cols=106 Identities=10% Similarity=0.105 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C--CCCCceeEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P--FSDCFFDAI 110 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~~D~v 110 (222)
++.+|||||||+|..+..+++.. ++..++|+|+++.+++.++++....+. .++.++++|+.++ + +++++||.|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l---~nv~~~~~Da~~~l~~~~~~~~~d~v 109 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGL---SNLRVMCHDAVEVLHKMIPDNSLRMV 109 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTC---SSEEEECSCHHHHHHHHSCTTCEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHcCCCChheE
Confidence 56799999999999999999884 677899999999999999988755432 5899999998874 3 567899999
Q ss_pred EEcccccCcccH--------HHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNVVDK--------RKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~~~~--------~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++++...+.... ..+++.+.++|||||.+++.+
T Consensus 110 ~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 110 QLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp EEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 998655433221 259999999999999998865
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=120.40 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=95.9
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh-hhhcCCCeeEEeCCCCCcCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~~ 102 (222)
..++..+...++.+|||+|||+|.++..+++.+++..+++++|+++.+++.++++.... + ....++.+..+|+.+.++
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g-~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG-QPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT-SCCTTEEEECSCGGGCCC
T ss_pred HHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCCcEEEEECchHhcCC
Confidence 45666677788899999999999999999987666779999999999999999887543 2 001589999999988776
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++++||+|++ +.+++..+++++.++|+|||.+++..+.
T Consensus 168 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 168 PDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 6678999998 3456678899999999999999987654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=116.18 Aligned_cols=116 Identities=20% Similarity=0.147 Sum_probs=94.3
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
....+.+.+...++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++....+. .++.+...|+....
T Consensus 65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~ 141 (215)
T 2yxe_A 65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY---DNVIVIVGDGTLGY 141 (215)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC---TTEEEEESCGGGCC
T ss_pred HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCeEEEECCcccCC
Confidence 334566667778889999999999999999999875557999999999999999988765432 47899999986532
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
...++||+|++..++++++ +++.+.|+|||++++.....
T Consensus 142 ~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 142 EPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp GGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred CCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence 2246799999999999887 37889999999999886554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.5e-17 Score=125.78 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=96.8
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
...+.+++.+...++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.++++....+.....++.+...|+.+
T Consensus 209 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~- 286 (375)
T 4dcm_A 209 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS- 286 (375)
T ss_dssp HHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-
T ss_pred HHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-
Confidence 344566777777777899999999999999999984 677999999999999999998876543322368889999987
Q ss_pred CCCCCceeEEEEcccccCcc-----cHHHHHHHHhcccCCCcEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVV-----DKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~-----~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+++.++||+|+++.++|+.. ....+++++.++|+|||.++++...
T Consensus 287 ~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 287 GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 44567899999999988532 1346899999999999999987543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=115.04 Aligned_cols=141 Identities=18% Similarity=0.098 Sum_probs=106.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
+++.+|+|+|||+|..+..+++. ++..+|+++|+++.+++.|+++....+.. .++++..+|..+.-.+.++||+|+.
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~--~~i~~~~~d~l~~l~~~~~~D~Ivi 90 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLK--EKIQVRLANGLAAFEETDQVSVITI 90 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCT--TTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEEECchhhhcccCcCCCEEEE
Confidence 56789999999999999999987 45668999999999999999998776543 4799999998652111226999887
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
...-. .-...++......|+++|++++... -..+.
T Consensus 91 aG~Gg--~~i~~Il~~~~~~L~~~~~lVlq~~-------------------------------------------~~~~~ 125 (225)
T 3kr9_A 91 AGMGG--RLIARILEEGLGKLANVERLILQPN-------------------------------------------NREDD 125 (225)
T ss_dssp EEECH--HHHHHHHHHTGGGCTTCCEEEEEES-------------------------------------------SCHHH
T ss_pred cCCCh--HHHHHHHHHHHHHhCCCCEEEEECC-------------------------------------------CCHHH
Confidence 55422 2257789999999999999987532 13467
Q ss_pred HHHHHHHcCCeEEEEee--ecCCeeeeEeee
Q 027517 193 LEKLALEIGFSRAKHYE--LSGGLMGNLVAT 221 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~--~~~~~~~~~~~~ 221 (222)
+++.|.+.||.+++..- ..+..+.++.++
T Consensus 126 vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 126 LRIWLQDHGFQIVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp HHHHHHHTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEEEEECCEEEEEEEEE
Confidence 88999999999987653 234455555543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=115.61 Aligned_cols=140 Identities=12% Similarity=0.069 Sum_probs=106.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
+++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|++++...+.. .++++..+|..+...+.++||+|++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~--~~I~v~~gD~l~~~~~~~~~D~Ivi 96 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLT--EQIDVRKGNGLAVIEKKDAIDTIVI 96 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCT--TTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEEecchhhccCccccccEEEE
Confidence 56789999999999999999987 45568999999999999999998766543 4699999998885443335999886
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
.+... .-...++....+.|++++++++.... ..+.
T Consensus 97 agmGg--~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------------------~~~~ 131 (244)
T 3gnl_A 97 AGMGG--TLIRTILEEGAAKLAGVTKLILQPNI-------------------------------------------AAWQ 131 (244)
T ss_dssp EEECH--HHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------------------CHHH
T ss_pred eCCch--HHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------------------ChHH
Confidence 54322 23467888999999999999876321 3468
Q ss_pred HHHHHHHcCCeEEEEeee--cCCeeeeEee
Q 027517 193 LEKLALEIGFSRAKHYEL--SGGLMGNLVA 220 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~--~~~~~~~~~~ 220 (222)
+++.|.+.||.+++..-. .+..+-++.+
T Consensus 132 lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~ 161 (244)
T 3gnl_A 132 LREWSEQNNWLITSEAILREDNKVYEIMVL 161 (244)
T ss_dssp HHHHHHHHTEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEEEEECCEEEEEEEE
Confidence 889999999998765533 3344445444
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=125.51 Aligned_cols=120 Identities=19% Similarity=0.157 Sum_probs=96.1
Q ss_pred hhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 18 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
....+.+.+.......++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.++++....+.. .+++++++|+
T Consensus 47 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~ 121 (376)
T 3r0q_C 47 RMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMADHARALVKANNLD--HIVEVIEGSV 121 (376)
T ss_dssp HHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESS-TTHHHHHHHHHHTTCT--TTEEEEESCG
T ss_pred HHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccH-HHHHHHHHHHHHcCCC--CeEEEEECch
Confidence 34555666666666678899999999999999999876 2 2389999999 9999999887655432 4699999999
Q ss_pred CCcCCCCCceeEEEEcccccCc---ccHHHHHHHHhcccCCCcEEEEEe
Q 027517 98 LDLPFSDCFFDAITMGYGLRNV---VDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 98 ~~~~~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+++++ ++||+|++....+.. .....+++.+.++|+|||.+++..
T Consensus 122 ~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 122 EDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp GGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 998776 789999996654444 457889999999999999997643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=118.00 Aligned_cols=114 Identities=15% Similarity=0.206 Sum_probs=90.2
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh---hhhhcCCCeeEEeCCCCCc---
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL---VSKACYKNIEWVEGDALDL--- 100 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~d~~~~--- 100 (222)
..+....++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++... .+.. .++.++++|+.+.
T Consensus 29 ~~~~~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~--~~v~~~~~D~~~~~~~ 105 (260)
T 2ozv_A 29 ASLVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFS--ARIEVLEADVTLRAKA 105 (260)
T ss_dssp HHTCCCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTG--GGEEEEECCTTCCHHH
T ss_pred HHHhcccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCc--ceEEEEeCCHHHHhhh
Confidence 345566677899999999999999999884 567999999999999999998765 3322 3699999999886
Q ss_pred ----CCCCCceeEEEEcccccCc------------------ccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 ----PFSDCFFDAITMGYGLRNV------------------VDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ----~~~~~~~D~v~~~~~l~~~------------------~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.++.++||+|+++..+... .....+++.+.++|+|||.+++..
T Consensus 106 ~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 106 RVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp HHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 2456789999998554432 236788999999999999998853
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=123.08 Aligned_cols=116 Identities=25% Similarity=0.350 Sum_probs=95.1
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.....+.+.+...++.+|||+|||+|..+..+++......+|+++|+++++++.++++....+. .++.+..+|+.+.
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~---~~v~~~~~d~~~~ 138 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI---ENVIFVCGDGYYG 138 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCeEEEECChhhc
Confidence 3445666777778899999999999999999998864346799999999999999998765432 4699999999875
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
..+.++||+|++..++++++ +.+.+.|||||++++....
T Consensus 139 ~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 139 VPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred cccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence 44456899999999999987 4678899999999987544
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=122.87 Aligned_cols=157 Identities=18% Similarity=0.130 Sum_probs=91.6
Q ss_pred HHHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 26 AVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 26 ~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
+++.+.. .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.++++..........++.+.. ..++ +.
T Consensus 28 ~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~--~~~~--~~ 101 (232)
T 3opn_A 28 ALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAV--LADF--EQ 101 (232)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCC--GGGC--CS
T ss_pred HHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeC--HhHc--Cc
Confidence 3344433 35679999999999999999876 2 248999999999999877654221100001222211 1111 11
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhH
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 184 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (222)
..+|.+.+..++.++ ..++++++++|||||.+++.. . +............ +.... ..
T Consensus 102 ~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~--~---p~~e~~~~~~~~~------G~~~d---------~~ 158 (232)
T 3opn_A 102 GRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI--K---PQFEAGREQVGKN------GIIRD---------PK 158 (232)
T ss_dssp CCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE--C---HHHHSCHHHHC-C------CCCCC---------HH
T ss_pred CCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE--C---cccccCHHHhCcC------CeecC---------cc
Confidence 123444444444443 678999999999999998853 1 1111100000000 00000 11
Q ss_pred hhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 185 REFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 185 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.+..+.+++.++++++||++......+
T Consensus 159 ~~~~~~~~l~~~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 159 VHQMTIEKVLKTATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHHHHHHHHHHHHTEEEEEEEECS
T ss_pred hhHHHHHHHHHHHHHCCCEEEEEEEcc
Confidence 123478899999999999998876543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-17 Score=125.54 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=91.9
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+.+.+.......++.+|||+|||+|.++..+++. +..+|+++|+| ++++.++++....+.. .++.++++|+.+++
T Consensus 54 ~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~~~--~~v~~~~~d~~~~~ 128 (349)
T 3q7e_A 54 YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANKLD--HVVTIIKGKVEEVE 128 (349)
T ss_dssp HHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTTCT--TTEEEEESCTTTCC
T ss_pred HHHHHHhccccCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcCCC--CcEEEEECcHHHcc
Confidence 4444444334457889999999999999999876 34599999999 5999999887654432 46999999999988
Q ss_pred CCCCceeEEEEccc---ccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 102 FSDCFFDAITMGYG---LRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 102 ~~~~~~D~v~~~~~---l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
++.++||+|++..+ +++.++...+++.+.++|||||.++.
T Consensus 129 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 129 LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 87789999998665 33446788999999999999999874
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.4e-16 Score=119.85 Aligned_cols=117 Identities=27% Similarity=0.426 Sum_probs=89.8
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh--------hcCCCeeEEeC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK--------ACYKNIEWVEG 95 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~ 95 (222)
..++..+...++.+|||+|||+|.++..+++..++..+++++|+++.+++.++++....+. ....++.+..+
T Consensus 95 ~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 95 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 4556666778899999999999999999999876667999999999999999998764320 01158999999
Q ss_pred CCCCc--CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 96 DALDL--PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 96 d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|+.+. ++++++||+|++.. +++..+++++.+.|+|||.+++....
T Consensus 175 d~~~~~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp CTTCCC-------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred ChHHcccccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99875 34556799999854 33445789999999999999877653
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-17 Score=114.82 Aligned_cols=117 Identities=17% Similarity=0.110 Sum_probs=94.1
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---CCCc
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---SDCF 106 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~ 106 (222)
++..++.+|||+|||. + .+|+|+.|++.++++.. .++.+.++|+.++++ ++++
T Consensus 8 ~g~~~g~~vL~~~~g~----------------v-~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~~~~~ 63 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS----------------S-PVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAHKESS 63 (176)
T ss_dssp TTCCTTSEEEEEECTT----------------S-CHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCCCSSC
T ss_pred cCCCCCCEEEEecCCc----------------e-eeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccCCCCC
Confidence 4567899999999986 1 28999999999998753 358999999998776 6788
Q ss_pred eeEEEEcccccCc-ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 107 FDAITMGYGLRNV-VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 107 ~D~v~~~~~l~~~-~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
||+|+++.++||+ ++...++++++++|||||++++.++....... ..
T Consensus 64 fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~--------------------------------~~ 111 (176)
T 2ld4_A 64 FDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDN--------------------------------NS 111 (176)
T ss_dssp EEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCS--------------------------------SS
T ss_pred EeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEccccccccc--------------------------------cc
Confidence 9999999999999 89999999999999999999985432111000 01
Q ss_pred hcCCHHHHHHHHHHcCC
Q 027517 186 EFLTGKDLEKLALEIGF 202 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf 202 (222)
..++.+++.++++++||
T Consensus 112 ~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 112 KVKTASKLCSALTLSGL 128 (176)
T ss_dssp SSCCHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHCCC
Confidence 13477899999999999
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-17 Score=116.12 Aligned_cols=120 Identities=19% Similarity=0.181 Sum_probs=90.6
Q ss_pred HHHHHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 24 RMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 24 ~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
..+...+.. .++.+|||+|||+|.++..++... ..+|+++|+|+.+++.++++....+.. .++++++++|+.+...
T Consensus 42 ~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~d~~~~~~ 118 (201)
T 2ift_A 42 ETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCS-SEQAEVINQSSLDFLK 118 (201)
T ss_dssp HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCC-TTTEEEECSCHHHHTT
T ss_pred HHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCCC-ccceEEEECCHHHHHH
Confidence 344444432 257799999999999999877652 358999999999999999987654320 0379999999877532
Q ss_pred --CCCc-eeEEEEcccccCcccHHHHHHHH--hcccCCCcEEEEEecCCC
Q 027517 103 --SDCF-FDAITMGYGLRNVVDKRKALEES--FRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 103 --~~~~-~D~v~~~~~l~~~~~~~~~l~~~--~~~l~~gG~l~i~~~~~~ 147 (222)
++++ ||+|+++.+++ ..+...+++.+ .++|+|||.+++......
T Consensus 119 ~~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 119 QPQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp SCCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred hhccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 3568 99999988854 56677888888 678999999988765543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=117.19 Aligned_cols=99 Identities=29% Similarity=0.437 Sum_probs=85.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|.++..+++.+ ++.+++++|+++.+++.++++. .++.+...|+.++++++++||+|++
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~ 154 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY--------PQVTFCVASSHRLPFSDTSMDAIIR 154 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC--------TTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcchhhCCCCCCceeEEEE
Confidence 567899999999999999999875 4669999999999999998774 4789999999988877789999998
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
..+.. .++++.++|||||.+++.++...
T Consensus 155 ~~~~~-------~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 155 IYAPC-------KAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp ESCCC-------CHHHHHHHEEEEEEEEEEEECTT
T ss_pred eCChh-------hHHHHHHhcCCCcEEEEEEcCHH
Confidence 76632 47889999999999999887654
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=123.67 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=95.5
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
..+.+++.+...++.+|||+|||+|.++..+++. .+..+++++|+|+.+++.++++....+ ..+.+...|+.+..
T Consensus 184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~----~~~~~~~~d~~~~~ 258 (343)
T 2pjd_A 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARH-SPKIRLTLCDVSAPAVEASRATLAANG----VEGEVFASNVFSEV 258 (343)
T ss_dssp HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHH-CTTCBCEEEESBHHHHHHHHHHHHHTT----CCCEEEECSTTTTC
T ss_pred HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHhC----CCCEEEEccccccc
Confidence 4556666665556779999999999999999988 466799999999999999999876543 24677888887643
Q ss_pred CCCCceeEEEEcccccC-----cccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSDCFFDAITMGYGLRN-----VVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~-----~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+++||+|+++.++|+ ..+...+++++.++|+|||.+++....
T Consensus 259 --~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 259 --KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp --CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred --cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 568999999999885 345688999999999999999987654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=117.31 Aligned_cols=110 Identities=19% Similarity=0.293 Sum_probs=84.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh---hhcCCCeeEEeCCCCC-cC--CCCCc
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS---KACYKNIEWVEGDALD-LP--FSDCF 106 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~d~~~-~~--~~~~~ 106 (222)
.++.+|||||||+|.++..+++.. ++..++|+|+++.+++.|+++..... .....++.++++|+.+ ++ ++.++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 456689999999999999999874 66799999999999999987754321 1123689999999987 55 56788
Q ss_pred eeEEEEcccccCccc--------HHHHHHHHhcccCCCcEEEEEe
Q 027517 107 FDAITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
||.|++++...+... ...+++++.++|||||.+++..
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 999998765433221 1478999999999999998864
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-17 Score=113.66 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=91.6
Q ss_pred HHHHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c
Q 027517 23 KRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L 100 (222)
Q Consensus 23 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~ 100 (222)
...+...+. ..++.+|||+|||+|..+..+++. +..+++++|+++.+++.++++....+.. .++.++.+|+.+ +
T Consensus 19 ~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~ 94 (177)
T 2esr_A 19 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAE--NRFTLLKMEAERAI 94 (177)
T ss_dssp HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCG--GGEEEECSCHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCC--CceEEEECcHHHhH
Confidence 345555554 557789999999999999998876 3458999999999999999987654321 368999999877 3
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHh--cccCCCcEEEEEecCCCC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESF--RVLKPGSRISVLDFNKST 148 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~l~~gG~l~i~~~~~~~ 148 (222)
+...++||+|+++.+++ .......++.+. ++|+|||.+++.......
T Consensus 95 ~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 143 (177)
T 2esr_A 95 DCLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETDKTVL 143 (177)
T ss_dssp HHBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred HhhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence 33345699999987653 234456677776 999999999987766543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=115.03 Aligned_cols=120 Identities=16% Similarity=0.054 Sum_probs=88.5
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeC-ChhHHHHHhcchh-----hhhhh--cCCCeeEE
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF-SKNQLSMASSRQD-----LVSKA--CYKNIEWV 93 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~~-----~~~~~--~~~~i~~~ 93 (222)
....+.......++.+|||+|||+|..+..+++. + ..+|+++|+ ++.+++.++++.. ..+.. ...++.+.
T Consensus 67 l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~ 144 (281)
T 3bzb_A 67 LADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV 144 (281)
T ss_dssp HHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred HHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence 3344444444456789999999999999988875 2 248999999 8999999998873 22110 00267787
Q ss_pred eCCCCCcC--C----CCCceeEEEEcccccCcccHHHHHHHHhcccC---C--CcEEEEEe
Q 027517 94 EGDALDLP--F----SDCFFDAITMGYGLRNVVDKRKALEESFRVLK---P--GSRISVLD 143 (222)
Q Consensus 94 ~~d~~~~~--~----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~---~--gG~l~i~~ 143 (222)
..+..+.. . +.++||+|++..++++.++...+++.+.++|+ | ||.+++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 145 PYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp ECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred EecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 66654421 1 34689999999999999999999999999999 9 99887653
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-16 Score=121.47 Aligned_cols=117 Identities=23% Similarity=0.237 Sum_probs=92.7
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+.+.+.+.....++.+|||+|||+|.++..+++. ...+|+++|++ .+++.++++....+.. ++++++.+|+.+
T Consensus 24 ~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~--~~i~~~~~d~~~ 98 (328)
T 1g6q_1 24 LSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFS--DKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCT--TTEEEEESCTTT
T ss_pred HHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCC--CCEEEEECchhh
Confidence 445556655555567889999999999999988875 23489999999 5899998887654432 579999999999
Q ss_pred cCCCCCceeEEEEccc---ccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 100 LPFSDCFFDAITMGYG---LRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~---l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
++++.++||+|++... +.+...+..++..+.++|+|||.++.
T Consensus 99 ~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 99 VHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp SCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 8777678999998754 44445678899999999999999973
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=117.85 Aligned_cols=153 Identities=13% Similarity=0.067 Sum_probs=98.1
Q ss_pred HHHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE-eCCCCCcC--
Q 027517 26 AVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV-EGDALDLP-- 101 (222)
Q Consensus 26 ~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~d~~~~~-- 101 (222)
+++.+.. .++.+|||+|||||.++..+++. ...+|+++|+++.|++.+.+.. +++... ..|+..++
T Consensus 76 ~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~~--------~rv~~~~~~ni~~l~~~ 145 (291)
T 3hp7_A 76 ALAVFNLSVEDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQD--------DRVRSMEQYNFRYAEPV 145 (291)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHHTC--------TTEEEECSCCGGGCCGG
T ss_pred HHHhcCCCccccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhC--------cccceecccCceecchh
Confidence 3344443 35679999999999999988876 2358999999999998854432 233322 23443322
Q ss_pred -CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHh
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYL 180 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (222)
++..+||+|++..+++++ ..++.+++++|+|||.+++.... . +..-..... ..+.+..
T Consensus 146 ~l~~~~fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lvkP--q---fe~~~~~~~------~~G~vrd------- 204 (291)
T 3hp7_A 146 DFTEGLPSFASIDVSFISL---NLILPALAKILVDGGQVVALVKP--Q---FEAGREQIG------KNGIVRE------- 204 (291)
T ss_dssp GCTTCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEECG--G---GTSCGGGCC-------CCCCCC-------
T ss_pred hCCCCCCCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEECc--c---cccChhhcC------CCCccCC-------
Confidence 233459999998887755 67899999999999999886211 1 000000000 0000000
Q ss_pred HHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 181 KSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
...+..+.+++.++++++||.+......+
T Consensus 205 --~~~~~~~~~~v~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 205 --SSIHEKVLETVTAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp --HHHHHHHHHHHHHHHHHTTEEEEEEEECS
T ss_pred --HHHHHHHHHHHHHHHHHCCCEEEEEEECC
Confidence 11233467899999999999988766543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-16 Score=114.56 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=91.8
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.....+.+.+...++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++.... .++.+..+|+.+.
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~-----~~v~~~~~d~~~~ 128 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLG 128 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhc-----CCeEEEECCcccc
Confidence 334566667777888999999999999999999873 68999999999999999887433 2789999998873
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
....++||+|++..+++++++ ++.+.|+|||++++.....
T Consensus 129 ~~~~~~fD~v~~~~~~~~~~~------~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 129 YEEEKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CGGGCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEECSS
T ss_pred cccCCCccEEEECCcHHHHHH------HHHHHcCCCcEEEEEEcCC
Confidence 223468999999999998864 5888999999999887654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=110.48 Aligned_cols=102 Identities=24% Similarity=0.319 Sum_probs=85.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--------CC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------FS 103 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~ 103 (222)
..++.+|||+|||+|..+..+++.++++.+++++|+++ +++. .++.+.+.|+.+.+ ++
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-------------~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-------------VGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-------------TTEEEEESCTTSHHHHHHHHHHHT
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-------------CcEEEEEcccccchhhhhhhccCC
Confidence 56788999999999999999998876667999999998 5421 47899999998865 56
Q ss_pred CCceeEEEEcccccCcccH-----------HHHHHHHhcccCCCcEEEEEecCCC
Q 027517 104 DCFFDAITMGYGLRNVVDK-----------RKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~-----------~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
+++||+|+++.++++.... ..+++++.++|+|||.+++..+...
T Consensus 86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 6789999999988877654 6889999999999999998776543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-16 Score=120.13 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=93.9
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+.+.+...+...++.+|||+|||+|.++..+++. ...+|+++|+++ +++.++++....+.. ++++++.+|+.+
T Consensus 36 ~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~--~~v~~~~~d~~~ 110 (348)
T 2y1w_A 36 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLT--DRIVVIPGKVEE 110 (348)
T ss_dssp HHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCT--TTEEEEESCTTT
T ss_pred HHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCC--CcEEEEEcchhh
Confidence 445566666666678889999999999999988875 345899999996 888888876544322 579999999998
Q ss_pred cCCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEE
Q 027517 100 LPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
++.+ ++||+|++...++|+. +....+.+++++|+|||.+++.
T Consensus 111 ~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 111 VSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred CCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 7655 5799999998887773 4567888999999999999854
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=112.06 Aligned_cols=124 Identities=17% Similarity=0.115 Sum_probs=93.7
Q ss_pred hHHHHHHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 20 RIWKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
..+...+...+. ..++.+|||+|||+|..+..+++. ...+++++|+++.+++.++++....+.. ++++++++|+.
T Consensus 29 ~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~ 104 (187)
T 2fhp_A 29 DKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEP--EKFEVRKMDAN 104 (187)
T ss_dssp HHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCG--GGEEEEESCHH
T ss_pred HHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCC--cceEEEECcHH
Confidence 344455566553 357789999999999999988874 3468999999999999999987654321 47999999987
Q ss_pred CcC----CCCCceeEEEEcccccCcccHHHHHHHH--hcccCCCcEEEEEecCCCC
Q 027517 99 DLP----FSDCFFDAITMGYGLRNVVDKRKALEES--FRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 99 ~~~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~--~~~l~~gG~l~i~~~~~~~ 148 (222)
+.. ...++||+|+++.+++ ..+....++.+ .++|+|||.+++.......
T Consensus 105 ~~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 159 (187)
T 2fhp_A 105 RALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTVK 159 (187)
T ss_dssp HHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred HHHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence 732 1256899999988754 34556677777 8899999999887665533
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-16 Score=112.66 Aligned_cols=117 Identities=26% Similarity=0.281 Sum_probs=91.9
Q ss_pred HHHHHhhC--CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh--hcCCCeeEEeCCCCC
Q 027517 24 RMAVSWSG--AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK--ACYKNIEWVEGDALD 99 (222)
Q Consensus 24 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~d~~~ 99 (222)
..+++.+. ..++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++....+. ....++.+.+.|+..
T Consensus 65 ~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 144 (226)
T 1i1n_A 65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 144 (226)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc
Confidence 34445553 66788999999999999999998875557999999999999999988754321 012589999999886
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.....++||+|++...++++. +++.+.|||||++++.....
T Consensus 145 ~~~~~~~fD~i~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 145 GYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp CCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEESCT
T ss_pred CcccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEecC
Confidence 544456799999998887764 47889999999999876543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-16 Score=122.18 Aligned_cols=123 Identities=19% Similarity=0.175 Sum_probs=93.2
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHH-------hcchhhhhhhcCCCeeEEe
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA-------SSRQDLVSKACYKNIEWVE 94 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~ 94 (222)
+...+++.+...++.+|||+|||+|..+..+++..+ ..+|+|+|+++.+++.| ++++...+.. ..++.+++
T Consensus 230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~-~~nV~~i~ 307 (433)
T 1u2z_A 230 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNNVEFSL 307 (433)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCCEEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-CCceEEEE
Confidence 345566667778889999999999999999998763 34899999999999988 6665433210 15889988
Q ss_pred CCCCCc--CC--CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 95 GDALDL--PF--SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 95 ~d~~~~--~~--~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
+|.... ++ ..++||+|+++..+ +.++....++++.+.|||||++++.+...+
T Consensus 308 gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 308 KKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred cCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 764421 11 23679999998766 347788889999999999999998765443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-16 Score=114.87 Aligned_cols=106 Identities=8% Similarity=0.177 Sum_probs=86.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CCCCceeEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~ 111 (222)
++.+|||+|||+|..+..+++.++++++++++|+++++++.+++++...+.. ..+++++++|+.+.. .++++||+|+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~~i~~~~gda~~~l~~~~~~~fD~V~ 134 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS-PSRVRFLLSRPLDVMSRLANDSYQLVF 134 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC-GGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence 3459999999999999999998766789999999999999999988654421 037999999987642 3357899999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+... ..+....++.+.+.|+|||.+++.+
T Consensus 135 ~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 135 GQVS---PMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp ECCC---TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred EcCc---HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 8764 3455678999999999999998844
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-18 Score=126.03 Aligned_cols=103 Identities=19% Similarity=0.211 Sum_probs=87.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++....+.. .++.++++|+.+++ +.++||+|++
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~-~~~~~D~v~~ 150 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIA--DKIEFICGDFLLLA-SFLKADVVFL 150 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCG--GGEEEEESCHHHHG-GGCCCSEEEE
T ss_pred cCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--cCeEEEECChHHhc-ccCCCCEEEE
Confidence 36789999999999999999976 369999999999999999987654421 37999999998876 4568999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
+.++++..+....+.+++++|+|||.+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 151 SPPWGGPDYATAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp CCCCSSGGGGGSSSBCTTTSCSSCHHHHH
T ss_pred CCCcCCcchhhhHHHHHHhhcCCcceeHH
Confidence 99999988776678889999999998654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-16 Score=114.60 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=88.9
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C-C--C-
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-F--S- 103 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~--~- 103 (222)
+....++.+|||+|||+|..+..+++.++++.+++++|+++.+++.+++++...+.. +++.++++|+.+. + . .
T Consensus 53 l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~ 130 (223)
T 3duw_A 53 LVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN--DRVEVRTGLALDSLQQIENEK 130 (223)
T ss_dssp HHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHHHHHTT
T ss_pred HHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHHhcC
Confidence 334456789999999999999999988754779999999999999999988654432 4699999998763 1 1 1
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.++||+|++... .+....+++.+.+.|+|||.+++.+..
T Consensus 131 ~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 131 YEPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp CCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred CCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 156999998765 345678899999999999998876544
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=115.66 Aligned_cols=116 Identities=15% Similarity=0.163 Sum_probs=91.7
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C-
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P- 101 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~- 101 (222)
..+...+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+.. +++.++++|+.+. +
T Consensus 61 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~ 137 (232)
T 3ntv_A 61 DLIKQLIRMNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFE--NQVRIIEGNALEQFEN 137 (232)
T ss_dssp HHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCT--TTEEEEESCGGGCHHH
T ss_pred HHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECCHHHHHHh
Confidence 334444445577899999999999999999853 5779999999999999999988655432 4899999999774 3
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
...++||+|++... ..+...+++.+.+.|+|||++++.+..
T Consensus 138 ~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~ 178 (232)
T 3ntv_A 138 VNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNVL 178 (232)
T ss_dssp HTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred hccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence 22578999998754 455678999999999999999885443
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=113.13 Aligned_cols=117 Identities=13% Similarity=0.090 Sum_probs=89.6
Q ss_pred HHHHHHhhCCC-CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c
Q 027517 23 KRMAVSWSGAK-TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L 100 (222)
Q Consensus 23 ~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~ 100 (222)
...+.+.+... ++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++....+. .+++++++|+.+ +
T Consensus 42 ~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~D~~~~~ 116 (202)
T 2fpo_A 42 RETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA---GNARVVNSNAMSFL 116 (202)
T ss_dssp HHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHH
Confidence 33444444332 57799999999999999877652 24899999999999999998765432 489999999877 4
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhc--ccCCCcEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFR--VLKPGSRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~--~l~~gG~l~i~~~~ 145 (222)
+...++||+|++...++ ......+++.+.+ +|+|||.+++....
T Consensus 117 ~~~~~~fD~V~~~~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 117 AQKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp SSCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred hhcCCCCCEEEECCCCC-CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 44556899999987754 4566778888865 59999999887654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-15 Score=117.84 Aligned_cols=148 Identities=22% Similarity=0.246 Sum_probs=111.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
......++... ..++.+|||+|||+|.++..++... +..+++|+|+++.+++.|+++....+.. .++++.++|+.+
T Consensus 204 ~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~--~~i~~~~~D~~~ 279 (373)
T 3tm4_A 204 ASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVL--DKIKFIQGDATQ 279 (373)
T ss_dssp HHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCG--GGCEEEECCGGG
T ss_pred HHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCC--CceEEEECChhh
Confidence 33445555555 6788899999999999999998873 4458999999999999999998665432 479999999999
Q ss_pred cCCCCCceeEEEEcccccCcc-------c-HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccC
Q 027517 100 LPFSDCFFDAITMGYGLRNVV-------D-KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 171 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~-------~-~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (222)
++.+.++||+|+++..+.... + ...+++.++++| +|.+++..
T Consensus 280 ~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~---------------------------- 329 (373)
T 3tm4_A 280 LSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT---------------------------- 329 (373)
T ss_dssp GGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEE----------------------------
T ss_pred CCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE----------------------------
Confidence 887767899999987755331 1 266788888888 55554432
Q ss_pred ChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeee
Q 027517 172 GLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGN 217 (222)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~ 217 (222)
.+.+.+++.+++.||+..+......|...+
T Consensus 330 ----------------~~~~~~~~~~~~~G~~~~~~~~~~nG~l~~ 359 (373)
T 3tm4_A 330 ----------------TEKKAIEEAIAENGFEIIHHRVIGHGGLMV 359 (373)
T ss_dssp ----------------SCHHHHHHHHHHTTEEEEEEEEEEETTEEE
T ss_pred ----------------CCHHHHHHHHHHcCCEEEEEEEEEcCCEEE
Confidence 134577788999999999888887665443
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-17 Score=121.04 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=91.5
Q ss_pred HhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CC---
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FS--- 103 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~--- 103 (222)
......++.+|||+|||+|..+..+++.++++++|+++|+++++++.+++++...+.. .+++++++|+.+.. ..
T Consensus 54 ~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~--~~i~~~~gda~~~l~~~~~~ 131 (242)
T 3r3h_A 54 MLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE--HKIKLRLGPALDTLHSLLNE 131 (242)
T ss_dssp HHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT--TTEEEEESCHHHHHHHHHHH
T ss_pred HHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHhhc
Confidence 3334456779999999999999999998755789999999999999999988655432 58999999987642 11
Q ss_pred --CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 --DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 --~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.++||+|++... ..+....++.+.++|+|||.+++.+...
T Consensus 132 ~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 132 GGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp HCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred cCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 368999998764 4456778999999999999999876553
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=115.03 Aligned_cols=117 Identities=14% Similarity=0.195 Sum_probs=93.3
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P 101 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~ 101 (222)
...+...+...++.+|||+|||+|..+..+++.+ ++.+++++|+++.+++.+++++...+.. .++.+..+|+.+. +
T Consensus 43 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~ 119 (233)
T 2gpy_A 43 MESLLHLLKMAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLE--SRIELLFGDALQLGE 119 (233)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCT--TTEEEECSCGGGSHH
T ss_pred HHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECCHHHHHH
Confidence 3444455555677899999999999999999985 4679999999999999999987654422 4799999998773 3
Q ss_pred CC--CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FS--DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~--~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.. +++||+|++....+ +...+++.+.+.|+|||.+++.+..
T Consensus 120 ~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 120 KLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp HHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred hcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 22 46799999977643 6688999999999999999887543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.9e-16 Score=112.58 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=91.5
Q ss_pred HHHHHhh--CCCCCCeEEEecCCCChhHHHHHHHhC----CCCcEEEEeCChhHHHHHhcchhhhhh--hcCCCeeEEeC
Q 027517 24 RMAVSWS--GAKTGDNVLDVCCGSGDLSFLLSEQVG----SQGKVIGLDFSKNQLSMASSRQDLVSK--ACYKNIEWVEG 95 (222)
Q Consensus 24 ~~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~ 95 (222)
..+++.+ ...++.+|||+|||+|..+..+++..+ +..+++++|+++.+++.++++....+. ....++.+..+
T Consensus 68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 147 (227)
T 2pbf_A 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK 147 (227)
T ss_dssp HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC
T ss_pred HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC
Confidence 4445555 467788999999999999999998864 456999999999999999988765431 00258999999
Q ss_pred CCCCcC----CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 96 DALDLP----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 96 d~~~~~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|+.+.. ...++||+|++...++++. +.+.+.|+|||++++....
T Consensus 148 d~~~~~~~~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 148 NIYQVNEEEKKELGLFDAIHVGASASELP------EILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CGGGCCHHHHHHHCCEEEEEECSBBSSCC------HHHHHHEEEEEEEEEEEEE
T ss_pred ChHhcccccCccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEcc
Confidence 988754 3446799999999888764 6788999999999887654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=112.06 Aligned_cols=114 Identities=22% Similarity=0.260 Sum_probs=91.8
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
....+.+.+...++.+|||+|||+|.++..+++..+ .+++++|+++.+++.++++....+. .++.+..+|... +
T Consensus 79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~-~ 152 (235)
T 1jg1_A 79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV---KNVHVILGDGSK-G 152 (235)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGG-C
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEECCccc-C
Confidence 445566677778889999999999999999999863 6999999999999999998765432 468999999732 3
Q ss_pred CCC-CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 102 FSD-CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 102 ~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
++. .+||+|++..+++++++ ++.+.|+|||++++......
T Consensus 153 ~~~~~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 153 FPPKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp CGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEECSSS
T ss_pred CCCCCCccEEEECCcHHHHHH------HHHHhcCCCcEEEEEEecCC
Confidence 332 35999999999988864 67889999999998776543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-16 Score=114.77 Aligned_cols=101 Identities=17% Similarity=0.250 Sum_probs=81.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHH---hCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---CCC-CC
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQ---VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFS-DC 105 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~-~~ 105 (222)
.++.+|||||||+|..+..+++. +.++.+|+++|+++.+++.++.. . .+++++++|+.+. +.. ..
T Consensus 80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~----~----~~v~~~~gD~~~~~~l~~~~~~ 151 (236)
T 2bm8_A 80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD----M----ENITLHQGDCSDLTTFEHLREM 151 (236)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG----C----TTEEEEECCSSCSGGGGGGSSS
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc----C----CceEEEECcchhHHHHHhhccC
Confidence 35679999999999999999887 35677999999999998887621 1 5899999999874 432 33
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhc-ccCCCcEEEEEec
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFR-VLKPGSRISVLDF 144 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~-~l~~gG~l~i~~~ 144 (222)
+||+|++... | .+...++.++.+ .|||||++++.+.
T Consensus 152 ~fD~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 152 AHPLIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp CSSEEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred CCCEEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 7999998765 3 367889999997 9999999998654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-16 Score=112.54 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=87.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~ 111 (222)
.++.+|||+|||+|..+..+++.++++.+++++|+++.+++.++++....+.. ++++++++|+.+. +..++ ||+|+
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~-fD~v~ 131 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI--DRVELQVGDPLGIAAGQRD-IDILF 131 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG--GGEEEEESCHHHHHTTCCS-EEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC--ceEEEEEecHHHHhccCCC-CCEEE
Confidence 45679999999999999999988644679999999999999999887654432 4799999998763 43345 99999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+... ..+...+++++.++|+|||.+++.+..
T Consensus 132 ~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~ 162 (210)
T 3c3p_A 132 MDCD---VFNGADVLERMNRCLAKNALLIAVNAL 162 (210)
T ss_dssp EETT---TSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred EcCC---hhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence 8743 456788999999999999999886544
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=115.38 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=88.5
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C-CCC----
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-FSD---- 104 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~~~---- 104 (222)
...++.+|||+|||+|..+..+++.++++.+++++|+++.+++.+++++...+.. ++++++++|+.+. + ...
T Consensus 61 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~ 138 (225)
T 3tr6_A 61 KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS--DKIGLRLSPAKDTLAELIHAGQA 138 (225)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHHHHTTTCT
T ss_pred HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CceEEEeCCHHHHHHHhhhccCC
Confidence 3456779999999999999999988654779999999999999999988655432 4699999998653 1 111
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++||+|++... ..+...+++.+.++|+|||.+++.+..
T Consensus 139 ~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 139 WQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp TCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred CCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 68999997653 345688999999999999999987654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=111.41 Aligned_cols=117 Identities=20% Similarity=0.293 Sum_probs=90.9
Q ss_pred HHHHHHHhh--CCCCCCeEEEecCCCChhHHHHHHHhCC-----CCcEEEEeCChhHHHHHhcchhhhhh--hcCCCeeE
Q 027517 22 WKRMAVSWS--GAKTGDNVLDVCCGSGDLSFLLSEQVGS-----QGKVIGLDFSKNQLSMASSRQDLVSK--ACYKNIEW 92 (222)
Q Consensus 22 ~~~~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~--~~~~~i~~ 92 (222)
+...+++.+ ...++.+|||+|||+|..+..+++..+. ..+++++|+++++++.++++....+. ....++.+
T Consensus 70 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 149 (227)
T 1r18_A 70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 149 (227)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEE
Confidence 334455555 4677889999999999999999987532 25899999999999999988765430 00158999
Q ss_pred EeCCCCCcCCCC-CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 93 VEGDALDLPFSD-CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 93 ~~~d~~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
..+|..+ +++. ++||+|++..++++++ +++.+.|||||++++....
T Consensus 150 ~~~d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 150 VEGDGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EESCGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred EECCccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence 9999887 3333 6799999999998875 5788999999999887654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-16 Score=110.47 Aligned_cols=119 Identities=10% Similarity=0.065 Sum_probs=89.6
Q ss_pred HHHHHHHHhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 21 IWKRMAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 21 ~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
.....+...+.. +++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++....+ .++++.++|+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~~ 98 (171)
T 1ws6_A 26 RLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTG----LGARVVALPVE 98 (171)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHT----CCCEEECSCHH
T ss_pred HHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHHcC----CceEEEeccHH
Confidence 333444444432 26789999999999999999876 2359999999999999999876543 27899999987
Q ss_pred Cc-C-C--CCCceeEEEEcccccCcccHHHHHHHHh--cccCCCcEEEEEecCCCC
Q 027517 99 DL-P-F--SDCFFDAITMGYGLRNVVDKRKALEESF--RVLKPGSRISVLDFNKST 148 (222)
Q Consensus 99 ~~-~-~--~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~l~~gG~l~i~~~~~~~ 148 (222)
+. + . ..++||+|+++.+++ .+....++.+. ++|+|||.+++.......
T Consensus 99 ~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 99 VFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp HHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred HHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 63 2 1 124799999998775 44556666676 999999999987766544
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=113.89 Aligned_cols=118 Identities=15% Similarity=0.259 Sum_probs=93.0
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF--- 102 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--- 102 (222)
+...+...++.+|||+|||+|..+..+++.++...+++++|+++.+++.++++....+. .++.+++.|+.+++.
T Consensus 75 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~~ 151 (274)
T 3ajd_A 75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV---LNTIIINADMRKYKDYLL 151 (274)
T ss_dssp HHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCHHHHHHHHH
T ss_pred HHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC---CcEEEEeCChHhcchhhh
Confidence 34455667889999999999999999998764447999999999999999998866543 489999999887643
Q ss_pred -CCCceeEEEEcccccCc------------------ccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 103 -SDCFFDAITMGYGLRNV------------------VDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 103 -~~~~~D~v~~~~~l~~~------------------~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
..++||+|++....... .....+++++.+.|||||++++.+.+.
T Consensus 152 ~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 152 KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 24679999987433211 345788999999999999998876554
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-16 Score=121.21 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=82.1
Q ss_pred CCCeEEEecCC------CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC----
Q 027517 34 TGDNVLDVCCG------SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS---- 103 (222)
Q Consensus 34 ~~~~vLdiG~G------~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---- 103 (222)
++.+||||||| +|..+..+++.+.++++|+++|+|+.+. . . .++++++++|+.++++.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~-~--------~~rI~fv~GDa~dlpf~~~l~ 283 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---V-D--------ELRIRTIQGDQNDAEFLDRIA 283 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---G-C--------BTTEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---h-c--------CCCcEEEEecccccchhhhhh
Confidence 45799999999 7777777777655678999999999972 1 1 15899999999987655
Q ss_pred --CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 104 --DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 104 --~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.++||+|++.. .|++++....+++++++|||||++++.++.
T Consensus 284 ~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 284 RRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred cccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 57899999875 467788899999999999999999998776
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.64 E-value=8.7e-16 Score=114.31 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=84.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhh---hhhcCCC-------------------
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLV---SKACYKN------------------- 89 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~~~~~------------------- 89 (222)
.++.+|||+|||+|.++..+++.+ .+..+++++|+|+.+++.++++.... +.. .+
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 127 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLT--ARELERREQSERFGKPSYLEA 127 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHH--HHHHHHHHHHHHHCCHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcccc--ccchhhhhhhhhcccccchhh
Confidence 356799999999999999998762 13458999999999999999776543 211 11
Q ss_pred ------ee-------------EEeCCCCCcCC-----CCCceeEEEEcccccCccc---------HHHHHHHHhcccCCC
Q 027517 90 ------IE-------------WVEGDALDLPF-----SDCFFDAITMGYGLRNVVD---------KRKALEESFRVLKPG 136 (222)
Q Consensus 90 ------i~-------------~~~~d~~~~~~-----~~~~~D~v~~~~~l~~~~~---------~~~~l~~~~~~l~~g 136 (222)
+. +.++|+.+... ...+||+|+++.++.+..+ ...+++++.++|+||
T Consensus 128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 207 (250)
T 1o9g_A 128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH 207 (250)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred hhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence 56 89999887431 3347999999877665432 458899999999999
Q ss_pred cEEEEEecC
Q 027517 137 SRISVLDFN 145 (222)
Q Consensus 137 G~l~i~~~~ 145 (222)
|+++++...
T Consensus 208 G~l~~~~~~ 216 (250)
T 1o9g_A 208 AVIAVTDRS 216 (250)
T ss_dssp CEEEEEESS
T ss_pred cEEEEeCcc
Confidence 999985443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=110.98 Aligned_cols=110 Identities=20% Similarity=0.339 Sum_probs=84.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh-----cCCCeeEEeCCCCC-cC--CCC
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-----CYKNIEWVEGDALD-LP--FSD 104 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~d~~~-~~--~~~ 104 (222)
.++.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.++++....... ...++.++++|+.+ ++ ++.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 356799999999999999999884 5678999999999999999876543100 12589999999987 44 556
Q ss_pred CceeEEEEcccccCccc--------HHHHHHHHhcccCCCcEEEEEe
Q 027517 105 CFFDAITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.++|.|++.+.-.+... ...+++++.++|+|||.+++..
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 78999987543222111 1479999999999999998853
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.6e-16 Score=113.72 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=88.8
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C-C-----
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-F----- 102 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~----- 102 (222)
....++.+|||+|||+|..+..+++.++++.+++++|+++.+++.+++++...+.. ++++++.+|+.+. + .
T Consensus 75 ~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~i~~~~gda~~~l~~l~~~~~ 152 (247)
T 1sui_A 75 LKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD--HKIDFREGPALPVLDEMIKDEK 152 (247)
T ss_dssp HHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG--GGEEEEESCHHHHHHHHHHSGG
T ss_pred HHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CCeEEEECCHHHHHHHHHhccC
Confidence 33456679999999999999999998755789999999999999999987654432 4799999998763 2 1
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+.++||+|++... ..+....++.+.++|+|||.+++.+.
T Consensus 153 ~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 153 NHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp GTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred CCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 1468999998754 34568899999999999999988653
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-15 Score=106.74 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=78.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCC-CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---------
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------- 101 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------- 101 (222)
..++.+|||+|||+|.++..+++.+++ +.+++++|+++.. . .+++.++++|+.+.+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------~--------~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------P--------IPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------C--------CTTCEEEECCTTTTSSCCC-----
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------C--------CCCceEEEccccchhhhhhccccc
Confidence 467789999999999999999988642 5799999999831 1 147899999998765
Q ss_pred ----------------CCCCceeEEEEcccccCc----ccH-------HHHHHHHhcccCCCcEEEEEecC
Q 027517 102 ----------------FSDCFFDAITMGYGLRNV----VDK-------RKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ----------------~~~~~~D~v~~~~~l~~~----~~~-------~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++.++||+|++...+++. .+. ..+++.+.++|+|||.+++..+.
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 455689999998887763 222 24788999999999999886554
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.1e-15 Score=112.58 Aligned_cols=110 Identities=17% Similarity=0.093 Sum_probs=83.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhc-CCCeeEEeCCCCCc-CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC-YKNIEWVEGDALDL-PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~-~~~~~~~D~v 110 (222)
+++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++....... .++++++++|+.+. +..+++||+|
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 456799999999999999998763 45699999999999999999875421001 26899999998763 2234689999
Q ss_pred EEcccccCc--ccH--HHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNV--VDK--RKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~--~~~--~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++...-..- ... ..+++.+++.|+|||.+++..
T Consensus 194 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 194 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 986532211 111 688999999999999998864
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-15 Score=111.38 Aligned_cols=110 Identities=13% Similarity=0.042 Sum_probs=84.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh-cCCCeeEEeCCCCCc-CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL-PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~-~~~~~~~D~v 110 (222)
+++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...... ..++++++.+|+.+. +...++||+|
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 456799999999999999998762 4569999999999999999987432101 126899999998763 3335689999
Q ss_pred EEcccccCccc----HHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNVVD----KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~~~----~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++....+..+. ...+++.++++|+|||.+++..
T Consensus 153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99665432221 2678999999999999998863
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=116.74 Aligned_cols=120 Identities=21% Similarity=0.280 Sum_probs=95.1
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--C
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--F 102 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~ 102 (222)
.+...+...++.+|||+|||+|..+..+++.++..++++++|+++.+++.++++....+. .++.+.+.|+.+.+ +
T Consensus 250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~ 326 (450)
T 2yxl_A 250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI---KIVKPLVKDARKAPEII 326 (450)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCTTCCSSSS
T ss_pred HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEEEcChhhcchhh
Confidence 344556778889999999999999999999874447999999999999999998866543 47999999998865 4
Q ss_pred CCCceeEEEEc------ccccCcccH----------------HHHHHHHhcccCCCcEEEEEecCCC
Q 027517 103 SDCFFDAITMG------YGLRNVVDK----------------RKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 103 ~~~~~D~v~~~------~~l~~~~~~----------------~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
++++||+|++. .++++.++. ..+++++.+.|||||++++.+.+..
T Consensus 327 ~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 327 GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 44679999963 334433432 5789999999999999998776543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.9e-15 Score=111.85 Aligned_cols=110 Identities=15% Similarity=0.025 Sum_probs=82.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh-cCCCeeEEeCCCCCc-CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL-PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~-~~~~~~~D~v 110 (222)
+++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...... ..++++++.+|+.+. +...++||+|
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 167 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 167 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEE
Confidence 445799999999999999999763 4569999999999999999987432111 126899999998763 3345679999
Q ss_pred EEcccccCcc-----cHHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNVV-----DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~~-----~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++...-.+.. ....+++.+++.|+|||.+++..
T Consensus 168 i~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 168 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9864322121 12688999999999999998863
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=114.20 Aligned_cols=118 Identities=19% Similarity=0.152 Sum_probs=88.8
Q ss_pred HHHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCC-CeeEEeCCCCCcC
Q 027517 24 RMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYK-NIEWVEGDALDLP 101 (222)
Q Consensus 24 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~ 101 (222)
..+.+.+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+.. . ++.++++|+.++.
T Consensus 142 ~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~--~~~v~~i~~D~~~~l 216 (332)
T 2igt_A 142 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLE--QAPIRWICEDAMKFI 216 (332)
T ss_dssp HHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCT--TSCEEEECSCHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--ccceEEEECcHHHHH
Confidence 34444443 345679999999999999999875 349999999999999999988655421 2 4899999988743
Q ss_pred C----CCCceeEEEEcccc----------cCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 102 F----SDCFFDAITMGYGL----------RNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 102 ~----~~~~~D~v~~~~~l----------~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
. ..++||+|+++... +...+...+++.+.++|+|||.+++.....
T Consensus 217 ~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 217 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred HHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 1 14579999995542 122356789999999999999987765543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.8e-15 Score=110.39 Aligned_cols=117 Identities=17% Similarity=0.133 Sum_probs=88.5
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+...+++.+...++.+|||+|||+|..+..+++. ++.+++++|+|+.+++.++++....+.. .++.++++|+.+
T Consensus 109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~--~~v~~~~~D~~~ 184 (284)
T 1nv8_A 109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVS--DRFFVRKGEFLE 184 (284)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCT--TSEEEEESSTTG
T ss_pred HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCC--CceEEEECcchh
Confidence 344445555554346679999999999999999987 5679999999999999999988655432 359999999987
Q ss_pred cCCCCCce---eEEEEccccc-----------Cccc--------HHHHHHHHh-cccCCCcEEEEE
Q 027517 100 LPFSDCFF---DAITMGYGLR-----------NVVD--------KRKALEESF-RVLKPGSRISVL 142 (222)
Q Consensus 100 ~~~~~~~~---D~v~~~~~l~-----------~~~~--------~~~~l~~~~-~~l~~gG~l~i~ 142 (222)
. .+ ++| |+|+++.... |.+. ...+++++. +.++|||.+++.
T Consensus 185 ~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 185 P-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp G-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred h-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 3 22 468 9999984332 2221 126899999 999999999874
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-15 Score=111.18 Aligned_cols=111 Identities=17% Similarity=0.089 Sum_probs=85.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh-cCCCeeEEeCCCCCc-CCCCCceeE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL-PFSDCFFDA 109 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~-~~~~~~~D~ 109 (222)
.+++.+|||+|||+|..+..+++. .+..+++++|+++.+++.+++++...... ..++++++.+|+.+. +...++||+
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKY-KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceE
Confidence 445679999999999999999876 34569999999999999999987542110 126899999998763 222568999
Q ss_pred EEEcccccCccc--H--HHHHHHHhcccCCCcEEEEEe
Q 027517 110 ITMGYGLRNVVD--K--RKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 110 v~~~~~l~~~~~--~--~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|++....+..+. . ..+++.+++.|+|||.+++..
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 999654333222 2 689999999999999998763
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-15 Score=108.43 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=90.2
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C--
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-- 101 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-- 101 (222)
.+.......++.+|||+|||+|..+..+++.++++.+++++|+++.+++.+++++...+.. .++.+..+|+.+. +
T Consensus 51 ~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~--~~v~~~~~d~~~~~~~~ 128 (239)
T 2hnk_A 51 FLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE--NKIFLKLGSALETLQVL 128 (239)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG--GGEEEEESCHHHHHHHH
T ss_pred HHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CCEEEEECCHHHHHHHH
Confidence 3444444557789999999999999999998654679999999999999999987654322 3589999997652 2
Q ss_pred ------------CCC--CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 ------------FSD--CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ------------~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++. ++||+|++... .++....++.+.+.|+|||++++.+..
T Consensus 129 ~~~~~~~~~~~~f~~~~~~fD~I~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 129 IDSKSAPSWASDFAFGPSSIDLFFLDAD---KENYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp HHCSSCCGGGTTTCCSTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred HhhcccccccccccCCCCCcCEEEEeCC---HHHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 122 67999998754 345678899999999999999986543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.9e-15 Score=108.34 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=91.1
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+.......++.+|||+|||+|..+..+++. ..+++++|+++.+++.++++....+.. .++.+...|+.+...+
T Consensus 81 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~ 155 (248)
T 2yvl_A 81 FYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLG--KNVKFFNVDFKDAEVP 155 (248)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCC--TTEEEECSCTTTSCCC
T ss_pred HHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCC--CcEEEEEcChhhcccC
Confidence 35556667778899999999999999999987 459999999999999999887544321 4789999999875424
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.++||+|++. .+++..+++++.++|+|||.+++....
T Consensus 156 ~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 156 EGIFHAAFVD-----VREPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp TTCBSEEEEC-----SSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred CCcccEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 5679999983 456678899999999999999987644
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-14 Score=112.09 Aligned_cols=105 Identities=14% Similarity=0.079 Sum_probs=84.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCC-CCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPF-SDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~~D~v 110 (222)
.++.+|||+| |+|.++..+++. ++..+++++|+++.+++.++++....+. .++.++++|+.+ ++. ..++||+|
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~l~~~~~~~fD~V 245 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGY---EDIEIFTFDLRKPLPDYALHKFDTF 245 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTC---CCEEEECCCTTSCCCTTTSSCBSEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC---CCEEEEEChhhhhchhhccCCccEE
Confidence 3578999999 999999999876 4556999999999999999999866542 379999999988 553 34579999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+++.+++.. ....+++++.++|+|||++++..
T Consensus 246 i~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 246 ITDPPETLE-AIRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp EECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEE
T ss_pred EECCCCchH-HHHHHHHHHHHHcccCCeEEEEE
Confidence 998776543 35788999999999999553333
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=111.53 Aligned_cols=110 Identities=18% Similarity=0.191 Sum_probs=87.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----CCCC--
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSD-- 104 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~-- 104 (222)
...++.+|||+|||+|..+..+++.++++.+++++|+++.+++.++++....+.. .++.+..+|+.+. +..+
T Consensus 69 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~--~~i~~~~~d~~~~l~~l~~~~~~ 146 (232)
T 3cbg_A 69 SLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA--EKISLRLGPALATLEQLTQGKPL 146 (232)
T ss_dssp HHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG--GGEEEEESCHHHHHHHHHTSSSC
T ss_pred HhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHHhcCCC
Confidence 3346679999999999999999988655679999999999999999887654432 4689999997542 2222
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++||+|++... .++....++++.+.|+|||.+++.+..
T Consensus 147 ~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 147 PEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp CCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred CCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 67999998764 356688999999999999999886544
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.2e-15 Score=110.53 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=89.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
...++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.++++....+. .++.++++|+.+.+. .++||+|
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~l---~~~~~~~~d~~~~~~-~~~~D~V 190 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNKL---NNVIPILADNRDVEL-KDVADRV 190 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTTC---SSEEEEESCGGGCCC-TTCEEEE
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEECChHHcCc-cCCceEE
Confidence 35678899999999999999999884 456999999999999999998865543 478999999988733 5679999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
++.... +...++..+.+.|+|||.+++.+...
T Consensus 191 i~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 191 IMGYVH----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp EECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred EECCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 997764 55678889999999999999887664
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-15 Score=115.74 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=88.2
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..++..+.......++++|||||||+|.++..+++. + ..+|+++|.|+ +++.|++.....+.. .+|.++.+++++
T Consensus 69 ~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~a-G-A~~V~ave~s~-~~~~a~~~~~~n~~~--~~i~~i~~~~~~ 143 (376)
T 4hc4_A 69 DAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQA-G-ARRVYAVEASA-IWQQAREVVRFNGLE--DRVHVLPGPVET 143 (376)
T ss_dssp HHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-THHHHHHHHHHTTCT--TTEEEEESCTTT
T ss_pred HHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHh-C-CCEEEEEeChH-HHHHHHHHHHHcCCC--ceEEEEeeeeee
Confidence 445555544333446889999999999998776665 2 23799999986 788888877665543 679999999999
Q ss_pred cCCCCCceeEEEE---cccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 100 LPFSDCFFDAITM---GYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 100 ~~~~~~~~D~v~~---~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
+.++ +++|+|++ ...+.+-.....++....++|+|||.++-
T Consensus 144 ~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 144 VELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 8776 67999998 44454555678888889999999998864
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=111.82 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=84.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh-cCCCeeEEeCCCCCc--CCCCCcee
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL--PFSDCFFD 108 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~--~~~~~~~D 108 (222)
.+++.+|||||||+|..+..+++. .+..+++++|+++.+++.+++++.....+ ..++++++++|+.+. ..+.++||
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~-~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD 196 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 196 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence 455679999999999999999976 34569999999999999999987542101 125899999998764 23356899
Q ss_pred EEEEcccccC-ccc---HHHHHHHHhcccCCCcEEEEE
Q 027517 109 AITMGYGLRN-VVD---KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 109 ~v~~~~~l~~-~~~---~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+|++...... ..+ ...+++.++++|+|||.+++.
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9998654211 112 378999999999999999875
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-15 Score=120.58 Aligned_cols=114 Identities=19% Similarity=0.188 Sum_probs=90.2
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+...+++.+...++.+|||+|||+|.++..+++. +..+|+++|+++ +++.++++....+.. .+++++.+|+.+++
T Consensus 146 ~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~--~~v~~~~~d~~~~~ 220 (480)
T 3b3j_A 146 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLT--DRIVVIPGKVEEVS 220 (480)
T ss_dssp HHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCT--TTEEEEESCTTTCC
T ss_pred HHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCC--CcEEEEECchhhCc
Confidence 3444555555567789999999999999988874 345999999998 999998887654432 58999999999876
Q ss_pred CCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEE
Q 027517 102 FSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i 141 (222)
.+ ++||+|++..+++++. +....+.+++++|+|||.+++
T Consensus 221 ~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 221 LP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred cC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 55 5799999988767663 446678889999999999985
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.9e-15 Score=112.15 Aligned_cols=110 Identities=16% Similarity=0.081 Sum_probs=81.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh-cCCCeeEEeCCCCCc-CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALDL-PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~-~~~~~~~D~v 110 (222)
+++.+|||||||+|..+..+++. .+..+++++|+++.+++.+++++...... ..++++++.+|+.+. +...++||+|
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence 45679999999999999999876 35579999999999999999987542101 126899999998763 3345689999
Q ss_pred EEcccccCcccH----HHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNVVDK----RKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~~~~----~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++...-+.-+.. ..+++.++++|+|||.+++..
T Consensus 186 i~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 186 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 986642211211 678999999999999998864
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-15 Score=110.16 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=88.5
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C-C-----
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-F----- 102 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~----- 102 (222)
....++.+|||+|||+|..+..+++.++++.+++++|+++++++.+++++...+.. +++.++++|+.+. + .
T Consensus 66 ~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~--~~i~~~~gda~~~l~~l~~~~~ 143 (237)
T 3c3y_A 66 LKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE--HKINFIESDAMLALDNLLQGQE 143 (237)
T ss_dssp HHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG--GGEEEEESCHHHHHHHHHHSTT
T ss_pred HHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHHhccC
Confidence 34456779999999999999999998755789999999999999999987654432 4799999998763 2 1
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+.++||+|++... ..+....++.+.+.|+|||.+++.+.
T Consensus 144 ~~~~fD~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 144 SEGSYDFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp CTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CCCCcCEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 1468999998643 34567889999999999999987643
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-15 Score=112.81 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=83.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh-cCCCeeEEeCCCCC-cCCCCCceeE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEGDALD-LPFSDCFFDA 109 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~-~~~~~~~~D~ 109 (222)
..++.+|||||||+|..+..+++. .+..+++++|+++.+++.+++++...... ..++++++.+|+.+ ++...++||+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~ 171 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 171 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceE
Confidence 355679999999999999999876 34569999999999999999987542111 12689999999876 3334578999
Q ss_pred EEEcccccCcc----cHHHHHHHHhcccCCCcEEEEEec
Q 027517 110 ITMGYGLRNVV----DKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 110 v~~~~~l~~~~----~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
|++....+..+ ....++++++++|+|||.+++...
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 99866533221 125689999999999999988653
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=111.43 Aligned_cols=110 Identities=14% Similarity=0.030 Sum_probs=85.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh--hcCCCeeEEeCCCCCc-CCCCCceeE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK--ACYKNIEWVEGDALDL-PFSDCFFDA 109 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~d~~~~-~~~~~~~D~ 109 (222)
+++.+|||||||+|..+..+++.. +..+++++|+++.+++.+++++..... -..++++++.+|+.+. +...++||+
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence 456799999999999999998863 456899999999999999988753211 0126899999998763 334578999
Q ss_pred EEEcccccC---cc--c--HHHHHHHHhcccCCCcEEEEEe
Q 027517 110 ITMGYGLRN---VV--D--KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 110 v~~~~~l~~---~~--~--~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|++....+. -+ . ...+++.++++|+|||.+++..
T Consensus 155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 999876544 11 1 3688999999999999998863
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.8e-14 Score=104.72 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=87.6
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
+..+...+ .++.+|||+|||+|.++..+++. ...+|+++|+++.+++.++++....+.. .+++++++|+.+++.
T Consensus 116 r~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~--~~v~~~~~D~~~~~~ 189 (278)
T 3k6r_A 116 RVRMAKVA--KPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVE--DRMSAYNMDNRDFPG 189 (278)
T ss_dssp HHHHHHHC--CTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCT--TTEEEECSCTTTCCC
T ss_pred HHHHHHhc--CCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEeCcHHHhcc
Confidence 34444443 57889999999999999999887 2458999999999999999998766543 579999999988754
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.+.||.|+++.... ...++....+.|++||++.+.+..
T Consensus 190 -~~~~D~Vi~~~p~~----~~~~l~~a~~~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 190 -ENIADRILMGYVVR----THEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp -CSCEEEEEECCCSS----GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred -ccCCCEEEECCCCc----HHHHHHHHHHHcCCCCEEEEEeee
Confidence 46799999875432 245677778899999998765543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=115.22 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=92.0
Q ss_pred HHhhCCC--CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-C
Q 027517 27 VSWSGAK--TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-S 103 (222)
Q Consensus 27 ~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~ 103 (222)
...+... ++.+|||+|||+|..+.++++.+++.+.|+++|+++.+++.+++++...+. .++.+++.|+.+++. .
T Consensus 108 ~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~---~nv~~~~~D~~~~~~~~ 184 (479)
T 2frx_A 108 VAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI---SNVALTHFDGRVFGAAV 184 (479)
T ss_dssp HHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCCSTTHHHHS
T ss_pred HHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCCHHHhhhhc
Confidence 3445555 889999999999999999999876567999999999999999999876543 479999999988653 3
Q ss_pred CCceeEEEEccc------ccCccc----------------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 DCFFDAITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 ~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.++||.|++... +...++ ...+++++.++|||||++++.+.+.
T Consensus 185 ~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 468999998322 222222 2468999999999999998876543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-15 Score=109.61 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=88.5
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCC--C
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFS--D 104 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~--~ 104 (222)
.....++.+|||+|||+|..+..+++.++++.+++++|+++.+++.+++++...+.. .++.++++|+.+. ..+ .
T Consensus 64 l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~--~~i~~~~~d~~~~~~~~~~~~ 141 (229)
T 2avd_A 64 LARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE--HKIDLRLKPALETLDELLAAG 141 (229)
T ss_dssp HHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHHHHHTT
T ss_pred HHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC--CeEEEEEcCHHHHHHHHHhcC
Confidence 334456789999999999999999987644679999999999999999987654322 5899999998653 111 1
Q ss_pred --CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 105 --CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 105 --~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++||+|++... ..+....++.+.+.|+|||.+++.+..
T Consensus 142 ~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 142 EAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp CTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred CCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 57999999654 345678899999999999999886543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-14 Score=105.89 Aligned_cols=100 Identities=15% Similarity=-0.079 Sum_probs=80.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
+.+.+|||||||+|..+..+++. + .+++++|+++.+++.+++++..... -..++++++.+|..+.. ++||+|+
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii 144 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIF 144 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEE
Confidence 45679999999999999999876 3 6999999999999999988754211 11258999999988754 6799999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+.. .++..+++.+++.|+|||.+++..
T Consensus 145 ~d~-----~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 145 CLQ-----EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ESS-----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred ECC-----CChHHHHHHHHHhcCCCcEEEEEc
Confidence 863 345568999999999999998853
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=108.75 Aligned_cols=107 Identities=12% Similarity=0.091 Sum_probs=85.1
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeEEEEc
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAITMG 113 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~ 113 (222)
.+|||||||+|..+..+++.+ ++.+++++|+++.+++.+++++.... .++++++.+|+.+. ..+.++||+|++.
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~---~~rv~v~~~Da~~~l~~~~~~~fDvIi~D 166 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPR---APRVKIRVDDARMVAESFTPASRDVIIRD 166 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCC---TTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccC---CCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence 499999999999999999875 56799999999999999999874321 26899999998764 2345789999986
Q ss_pred ccccCc-cc---HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 114 YGLRNV-VD---KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 114 ~~l~~~-~~---~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
...+.. +. ...+++.++++|+|||.+++.....
T Consensus 167 ~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 167 VFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp CSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred CCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 543322 11 2689999999999999998876543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=104.05 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=86.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.+..+|||||||+|-++..++.. .+..+|+++|+++.+++.+++++...+ .+..+...|....+ +.++||++++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~-~p~a~y~a~DId~~~le~a~~~l~~~g----~~~~~~v~D~~~~~-p~~~~DvaL~ 204 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGL-PAETVYIASDIDARLVGFVDEALTRLN----VPHRTNVADLLEDR-LDEPADVTLL 204 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTC-CTTCEEEEEESBHHHHHHHHHHHHHTT----CCEEEEECCTTTSC-CCSCCSEEEE
T ss_pred CCCceeeeeccCccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHHhcC----CCceEEEeeecccC-CCCCcchHHH
Confidence 44679999999999999988876 467899999999999999999987765 45788888887654 3467999999
Q ss_pred cccccCcccH--HHHHHHHhcccCCCcEEEEEec
Q 027517 113 GYGLRNVVDK--RKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 113 ~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+-+++++++. ...+ ++...|+|+|.++-.+.
T Consensus 205 lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 205 LKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp TTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred HHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 9999999653 3445 89999999998865443
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=114.87 Aligned_cols=119 Identities=19% Similarity=0.274 Sum_probs=93.1
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FS 103 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~ 103 (222)
.+...+...++.+|||+|||+|..+.++++.++..++|+++|+++.+++.+++++...+. .++.+.+.|+.+++ ..
T Consensus 96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~---~nv~v~~~Da~~l~~~~ 172 (456)
T 3m4x_A 96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV---SNAIVTNHAPAELVPHF 172 (456)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC---SSEEEECCCHHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhhhc
Confidence 344556677889999999999999999999876667999999999999999999877654 47899999987754 22
Q ss_pred CCceeEEEEccc------ccCccc----------------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 DCFFDAITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 ~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.++||+|++... +..-++ ...+++.+.++|||||+|+.++-+.
T Consensus 173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 468999998543 222122 1378999999999999998865543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-14 Score=107.33 Aligned_cols=108 Identities=11% Similarity=0.059 Sum_probs=82.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh--hhh------cCCCeeEEeCCCCCc-CC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV--SKA------CYKNIEWVEGDALDL-PF 102 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~------~~~~i~~~~~d~~~~-~~ 102 (222)
..++.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++ .. +.. ..++++++.+|+.+. +.
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~ 149 (281)
T 1mjf_A 73 HPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN 149 (281)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc
Confidence 345679999999999999999876 4569999999999999999887 32 110 126899999998653 22
Q ss_pred CCCceeEEEEcccccCcc--c--HHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVV--D--KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~--~--~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.++||+|++....+.-+ . ...+++.++++|+|||.+++..
T Consensus 150 -~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 150 -NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp -CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 46799999876532211 1 2678999999999999998863
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=114.72 Aligned_cols=118 Identities=14% Similarity=0.234 Sum_probs=92.3
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FS 103 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~ 103 (222)
.+...+...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++++...+. . +.+.+.|+.+++ ..
T Consensus 92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~---~-v~~~~~Da~~l~~~~ 167 (464)
T 3m6w_A 92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA---P-LAVTQAPPRALAEAF 167 (464)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC---C-CEEECSCHHHHHHHH
T ss_pred HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---e-EEEEECCHHHhhhhc
Confidence 344556677889999999999999999999876667999999999999999999876543 3 889999987764 23
Q ss_pred CCceeEEEEccc------ccCccc----------------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 DCFFDAITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 ~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.++||+|++... +...++ ...+++.+.++|||||+|+.++.+.
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 468999996332 222222 2678999999999999998866543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.56 E-value=7e-14 Score=111.71 Aligned_cols=118 Identities=19% Similarity=0.332 Sum_probs=93.1
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-- 101 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-- 101 (222)
..+...+...++.+|||+|||+|..+.++++.. ++++++++|+++.+++.++++....+ .++.+.+.|+.+.+
T Consensus 236 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g----~~~~~~~~D~~~~~~~ 310 (429)
T 1sqg_A 236 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLG----MKATVKQGDGRYPSQW 310 (429)
T ss_dssp HTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEEECCTTCTHHH
T ss_pred HHHHHHcCCCCcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcC----CCeEEEeCchhhchhh
Confidence 344556677888999999999999999999985 44799999999999999999886654 25788999998765
Q ss_pred CCCCceeEEEEcc------cccCcccH----------------HHHHHHHhcccCCCcEEEEEecCC
Q 027517 102 FSDCFFDAITMGY------GLRNVVDK----------------RKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 102 ~~~~~~D~v~~~~------~l~~~~~~----------------~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
++.++||.|++.. ++++.++. ..+++++.+.|||||++++.+.+.
T Consensus 311 ~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 311 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred cccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 4456899999732 23333432 478999999999999999877554
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-15 Score=123.69 Aligned_cols=108 Identities=17% Similarity=0.278 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~ 111 (222)
.+.+|||||||+|.++..+++. +++|+|+|.++.+++.|+.+....+. .++.+.+++++++ ...+++||+|+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~fD~v~ 139 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPD---FAAEFRVGRIEEVIAALEEGEFDLAI 139 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTT---SEEEEEECCHHHHHHHCCTTSCSEEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCC---CceEEEECCHHHHhhhccCCCccEEE
Confidence 4579999999999999999976 67999999999999999988754321 3689999999886 34567899999
Q ss_pred EcccccCcccHHH--HHHHHhcccCCCcEEEEEecCCC
Q 027517 112 MGYGLRNVVDKRK--ALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 112 ~~~~l~~~~~~~~--~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
|..+++|++++.. .+..+.+.|+++|..++..+...
T Consensus 140 ~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~ 177 (569)
T 4azs_A 140 GLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVK 177 (569)
T ss_dssp EESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred ECcchhcCCCHHHHHHHHHHHHHhccccceeeEEeccc
Confidence 9999999987643 34567777888888777665543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-14 Score=106.30 Aligned_cols=97 Identities=14% Similarity=0.028 Sum_probs=73.2
Q ss_pred hCCCCCCeEEEecCCC------ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeE-EeCCCCCcCC
Q 027517 30 SGAKTGDNVLDVCCGS------GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW-VEGDALDLPF 102 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~------G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~d~~~~~~ 102 (222)
....++.+|||+|||+ |. ..+++..+++++|+++|+++. . +++++ +++|+.+.++
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v--------~~v~~~i~gD~~~~~~ 120 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V--------SDADSTLIGDCATVHT 120 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B--------CSSSEEEESCGGGCCC
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C--------CCCEEEEECccccCCc
Confidence 3567888999999955 65 555666555679999999997 1 36888 9999988765
Q ss_pred CCCceeEEEEcccccC-----------cccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLRN-----------VVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~-----------~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+ ++||+|+++...+. ......+++.+.++|||||.+++..+.
T Consensus 121 ~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 121 A-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp S-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred c-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 4 67999999754321 112357899999999999999986544
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=109.36 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=76.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE--eCCCCCcCCCCCcee
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV--EGDALDLPFSDCFFD 108 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~d~~~~~~~~~~~D 108 (222)
...++.+|||+|||+|.++..+++. .+|+++|+++ ++..+++....... ...++.++ ++|+.+++ +++||
T Consensus 79 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~-~~~~v~~~~~~~D~~~l~--~~~fD 150 (276)
T 2wa2_A 79 GVELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVET-FGWNLITFKSKVDVTKME--PFQAD 150 (276)
T ss_dssp SCCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCC-TTGGGEEEECSCCGGGCC--CCCCS
T ss_pred CCCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhh-cCCCeEEEeccCcHhhCC--CCCcC
Confidence 3457889999999999999998865 5899999998 54333322110000 00268888 89998865 56899
Q ss_pred EEEEcccccCccc----HH---HHHHHHhcccCCCc--EEEEEecC
Q 027517 109 AITMGYGLRNVVD----KR---KALEESFRVLKPGS--RISVLDFN 145 (222)
Q Consensus 109 ~v~~~~~l~~~~~----~~---~~l~~~~~~l~~gG--~l~i~~~~ 145 (222)
+|++..+ ++... .. .+++.+.++||||| .+++..+.
T Consensus 151 ~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 151 TVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 9999877 44322 11 37899999999999 98886666
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=97.88 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=71.6
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
...++.+|||+|||+|.++..+++. ...+++++|+++.+++.++++. .++.++++|+.+++ ++||+|
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~--------~~~~~~~~d~~~~~---~~~D~v 114 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEIS---GKYDTW 114 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGCC---CCEEEE
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhc--------CCCEEEECcHHHCC---CCeeEE
Confidence 3456789999999999999998876 2347999999999999999886 27899999998864 679999
Q ss_pred EEcccccCccc--HHHHHHHHhccc
Q 027517 111 TMGYGLRNVVD--KRKALEESFRVL 133 (222)
Q Consensus 111 ~~~~~l~~~~~--~~~~l~~~~~~l 133 (222)
+++.++++..+ ...+++++.+.+
T Consensus 115 ~~~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 115 IMNPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp EECCCC-------CHHHHHHHHHHE
T ss_pred EECCCchhccCchhHHHHHHHHHhc
Confidence 99999998854 356788888887
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=108.30 Aligned_cols=109 Identities=17% Similarity=0.089 Sum_probs=77.2
Q ss_pred HhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE--eCCCCCcCCCCC
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV--EGDALDLPFSDC 105 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~d~~~~~~~~~ 105 (222)
+.....++.+|||+|||+|.++..+++. .+|+++|+++ ++..+++....... ...++.++ ++|+.+++ ++
T Consensus 68 ~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~-~~~~v~~~~~~~D~~~l~--~~ 139 (265)
T 2oxt_A 68 ERGYVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITES-YGWNIVKFKSRVDIHTLP--VE 139 (265)
T ss_dssp HHTSCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCB-TTGGGEEEECSCCTTTSC--CC
T ss_pred HcCCCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhc-cCCCeEEEecccCHhHCC--CC
Confidence 3334567889999999999999988865 5899999998 43333222110000 00168888 89998875 56
Q ss_pred ceeEEEEcccccCcccH----H---HHHHHHhcccCCCc--EEEEEecC
Q 027517 106 FFDAITMGYGLRNVVDK----R---KALEESFRVLKPGS--RISVLDFN 145 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~----~---~~l~~~~~~l~~gG--~l~i~~~~ 145 (222)
+||+|+|..+ ++..+. . .+++.+.++|+||| .+++..+.
T Consensus 140 ~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 140 RTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 8999999877 443221 1 37899999999999 99887766
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-13 Score=96.84 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=78.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+|||+|||+|.++..+++. + ..+++++|+++.+++.++++....+ .++.++++|+.+++ .+||+|+
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~---~~~D~v~ 117 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFK----GKFKVFIGDVSEFN---SRVDIVI 117 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGT----TSEEEEESCGGGCC---CCCSEEE
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcC----CCEEEEECchHHcC---CCCCEEE
Confidence 456789999999999999999876 2 2379999999999999999876543 27899999998864 4799999
Q ss_pred EcccccCcc--cHHHHHHHHhcccCCCcEEEEE
Q 027517 112 MGYGLRNVV--DKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 112 ~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
++.+++... .....++.+.+.+ |+ +++.
T Consensus 118 ~~~p~~~~~~~~~~~~l~~~~~~l--~~-~~~~ 147 (207)
T 1wy7_A 118 MNPPFGSQRKHADRPFLLKAFEIS--DV-VYSI 147 (207)
T ss_dssp ECCCCSSSSTTTTHHHHHHHHHHC--SE-EEEE
T ss_pred EcCCCccccCCchHHHHHHHHHhc--Cc-EEEE
Confidence 999887764 3456788888887 44 4443
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=99.23 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=77.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCC--------CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE-eCCCCCcC-
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQ--------GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV-EGDALDLP- 101 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~--------~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~d~~~~~- 101 (222)
..++.+|||+|||+|.++..+++.++.. .+++++|+++.. .. .++.++ .+|+...+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~--------~~~~~~~~~d~~~~~~ 85 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PL--------EGATFLCPADVTDPRT 85 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CC--------TTCEEECSCCTTSHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------cC--------CCCeEEEeccCCCHHH
Confidence 4678899999999999999999986432 689999999842 01 467888 88877642
Q ss_pred -------CCCCceeEEEEcccccC----cccH-------HHHHHHHhcccCCCcEEEEEecCC
Q 027517 102 -------FSDCFFDAITMGYGLRN----VVDK-------RKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 102 -------~~~~~~D~v~~~~~l~~----~~~~-------~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
++.++||+|++...++. ..+. ..+++++.++|+|||.+++..+..
T Consensus 86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 23457999999765543 2232 478999999999999999876654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-14 Score=107.52 Aligned_cols=114 Identities=22% Similarity=0.275 Sum_probs=84.9
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
....+.+++.+...++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+.. ++++++++|+.+
T Consensus 14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~D~~~ 88 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVA--SKLQVLVGDVLK 88 (285)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTG--GGEEEEESCTTT
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEcceec
Confidence 444566777777778889999999999999999987 358999999999999999886533211 479999999988
Q ss_pred cCCCCCceeEEEEcccccCcccH-HHHHH--------------HH--hcccCCCcEEE
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDK-RKALE--------------ES--FRVLKPGSRIS 140 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~-~~~l~--------------~~--~~~l~~gG~l~ 140 (222)
.+++ +||+|+++..++...+. ..++. ++ +.+++|||.++
T Consensus 89 ~~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 89 TDLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp SCCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ccch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 7654 69999998765543322 12222 12 35889999763
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=98.58 Aligned_cols=98 Identities=16% Similarity=0.311 Sum_probs=74.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC--------C
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF--------S 103 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------~ 103 (222)
..++.+|||+|||+|.++..+++. ..+|+++|+++.. .. +++.++++|+.+.+. .
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~------~~--------~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME------EI--------AGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC------CC--------TTCEEEECCTTSSSHHHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc------cC--------CCeEEEEccccCHHHHHHHHHHhh
Confidence 467889999999999999999876 5699999999841 11 589999999987541 1
Q ss_pred ---CCceeEEEEcccccCc----cc-------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 ---DCFFDAITMGYGLRNV----VD-------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 ---~~~~D~v~~~~~l~~~----~~-------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.++||+|++....... .+ ...+++.+.++|||||.+++..+..
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~ 142 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG 142 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence 0389999997653322 11 2567888999999999998866543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-13 Score=106.94 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=84.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCC-CeeEEeCCCCCc-CC---CCCce
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYK-NIEWVEGDALDL-PF---SDCFF 107 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~~---~~~~~ 107 (222)
.++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.+++++...+.. . ++.++++|+.+. +. ...+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~-g-a~~V~~vD~s~~al~~A~~N~~~n~~~--~~~v~~~~~D~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG-G-AMATTSVDLAKRSRALSLAHFEANHLD--MANHQLVVMDVFDYFKYARRHHLTY 286 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-T-BSEEEEEESCTTHHHHHHHHHHHTTCC--CTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCeEEEEeeccCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCC--ccceEEEECCHHHHHHHHHHhCCCc
Confidence 56789999999999999999875 1 238999999999999999988655431 2 799999998763 21 23579
Q ss_pred eEEEEccccc-----Ccc----cHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 108 DAITMGYGLR-----NVV----DKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 108 D~v~~~~~l~-----~~~----~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
|+|++..... ... ....+++.+.+.|+|||.+++.+...
T Consensus 287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9999865442 222 34567788899999999998876443
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-13 Score=96.97 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=82.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|-++..+. +...|+++|+++.+++.+++.+...+ .+..+...|....+.+ ++||+|++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g----~~~~~~v~D~~~~~~~-~~~DvvLl 174 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKD----WDFTFALQDVLCAPPA-EAGDLALI 174 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTT----CEEEEEECCTTTSCCC-CBCSEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcC----CCceEEEeecccCCCC-CCcchHHH
Confidence 557799999999999998877 46799999999999999999976554 5778899998876654 58999999
Q ss_pred cccccCcccH-HHHHHHHhcccCCCcEEEEEe
Q 027517 113 GYGLRNVVDK-RKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 113 ~~~l~~~~~~-~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+-++|++++. .....++...|+++|.++-..
T Consensus 175 lk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 175 FKLLPLLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp ESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred HHHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 9999988542 223337888999997775443
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=104.79 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=74.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeC----ChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCCcCCCCCc
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF----SKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCF 106 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~ 106 (222)
..++.+|||+|||+|.++..+++. .+|+++|+ ++.+++... ....+ .+++.++++ |+..++ .++
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~---~~~v~~~~~~D~~~l~--~~~ 148 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYG---WNLVRLQSGVDVFFIP--PER 148 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTT---GGGEEEECSCCTTTSC--CCC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcC---CCCeEEEeccccccCC--cCC
Confidence 466789999999999999999865 48999999 554432111 11111 147889988 887764 468
Q ss_pred eeEEEEccccc---CcccHH---HHHHHHhcccCCCcEEEEEecCC
Q 027517 107 FDAITMGYGLR---NVVDKR---KALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 107 ~D~v~~~~~l~---~~~~~~---~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
||+|+|..+++ +..+.. .++..+.++|||||.+++..+..
T Consensus 149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 99999987653 222222 57888999999999988765544
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=102.33 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=81.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~ 111 (222)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+. ...+.++|+.+.. ...+.||+|+
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~----~~~~~~~D~~~~l~~~~~~fD~Ii 285 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGL----RVDIRHGEALPTLRGLEGPFHHVL 285 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTC----CCEEEESCHHHHHHTCCCCEEEEE
T ss_pred cCCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCC----CCcEEEccHHHHHHHhcCCCCEEE
Confidence 35889999999999999999875 34699999999999999999876543 2356688887642 2123499999
Q ss_pred EcccccCc---------ccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 112 MGYGLRNV---------VDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 112 ~~~~l~~~---------~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
+....... .+...+++.+.++|+|||.+++.....
T Consensus 286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 97654221 234678899999999999998665443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.8e-13 Score=103.11 Aligned_cols=110 Identities=21% Similarity=0.235 Sum_probs=86.9
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCC----CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCc
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQ----GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 106 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~----~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (222)
...++.+|||+|||+|.++..+++.+... .+++|+|+++.+++.|+.+....+ .++.+.++|..... +.++
T Consensus 127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g----~~~~i~~~D~l~~~-~~~~ 201 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR----QKMTLLHQDGLANL-LVDP 201 (344)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT----CCCEEEESCTTSCC-CCCC
T ss_pred CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC----CCceEEECCCCCcc-ccCC
Confidence 34466799999999999999998876322 689999999999999998875443 26789999987633 3467
Q ss_pred eeEEEEcccccCcccH------------------HHHHHHHhcccCCCcEEEEEecC
Q 027517 107 FDAITMGYGLRNVVDK------------------RKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~------------------~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
||+|+++.++++++.. ..+++++.+.|+|||+++++.+.
T Consensus 202 fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 202 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 9999999887665322 25799999999999999887644
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=102.47 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=86.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCcCC----CCCce
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLPF----SDCFF 107 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~~----~~~~~ 107 (222)
.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.++++....+. . .+++++++|+.+... ...+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~-g-~~~V~~vD~s~~al~~a~~n~~~ngl~~--~~v~~~~~D~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKLDL--SKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCG--GGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCeEEEeeccCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCc--cceEEEECCHHHHHHHHHhcCCCC
Confidence 46789999999999999999876 2 34899999999999999998865542 2 378999999877421 13579
Q ss_pred eEEEEccccc---------CcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 108 DAITMGYGLR---------NVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 108 D~v~~~~~l~---------~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|+|++..... .......++..+.+.|+|||.+++.+..
T Consensus 295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9999975432 2245678899999999999999887644
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=100.06 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=82.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|.++.. ++ ...+|+++|+++.+++.++++....+.. .++.++++|+.+.. ++||+|++
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l~--~~v~~~~~D~~~~~---~~fD~Vi~ 264 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKLE--HKIIPILSDVREVD---VKGNRVIM 264 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCGGGCC---CCEEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECChHHhc---CCCcEEEE
Confidence 4678999999999999998 75 2568999999999999999998765432 47999999998865 67999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
..... ...+++.+.+.|+|||.+++.+...
T Consensus 265 dpP~~----~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 265 NLPKF----AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp CCTTT----GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred CCcHh----HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 64322 2367888999999999998876654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-12 Score=101.53 Aligned_cols=112 Identities=19% Similarity=0.342 Sum_probs=84.8
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.+...+.+.+...++.+|||+|||+|.++..+++. ..+|+++|+|+++++.|+++....+. .++.++++|+.+.
T Consensus 273 ~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~---~~v~f~~~d~~~~ 346 (433)
T 1uwv_A 273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGL---QNVTFYHENLEED 346 (433)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCTTSC
T ss_pred HHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEECCHHHH
Confidence 34455666666677889999999999999999965 46899999999999999998765442 4899999999872
Q ss_pred ----CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 ----PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 ----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+++.++||+|+++...... ..+++.+.+ ++|++.+++.
T Consensus 347 l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 347 VTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp CSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEE
T ss_pred hhhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEE
Confidence 2345679999996654433 245555543 6888888775
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=101.39 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=85.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC----CCCceeE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF----SDCFFDA 109 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~ 109 (222)
++.+|||+|||+|.++..+++. ..+|+++|+++.+++.++++....+. .++.++++|+.+... ...+||+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~---~~~~~~~~d~~~~~~~~~~~~~~fD~ 282 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL---GNVRVLEANAFDLLRRLEKEGERFDL 282 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC---TTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC---CCceEEECCHHHHHHHHHhcCCCeeE
Confidence 6779999999999999999976 35899999999999999998865543 358999999877421 1467999
Q ss_pred EEEcccccCc---------ccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 110 ITMGYGLRNV---------VDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 110 v~~~~~l~~~---------~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
|++....... .....++..+.+.|+|||.+++.+...
T Consensus 283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9996543221 335678999999999999998876543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-13 Score=104.75 Aligned_cols=110 Identities=18% Similarity=0.223 Sum_probs=86.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC----CCCcee
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF----SDCFFD 108 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D 108 (222)
.++.+|||+|||+|.++..+++. ...+|+++|+++.+++.++++....+.. .++.++++|+.+... ...+||
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~--~~v~~~~~d~~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVE--DRMKFIVGSAFEEMEKLQKKGEKFD 291 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCG--GGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC--ccceEEECCHHHHHHHHHhhCCCCC
Confidence 36789999999999999999875 2348999999999999999988655432 278999999876421 246799
Q ss_pred EEEEcccccCc---------ccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 109 AITMGYGLRNV---------VDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 109 ~v~~~~~l~~~---------~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
+|++....... .+...++..+.+.|+|||.+++.+...
T Consensus 292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 99996543322 345678999999999999998876554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=110.33 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=86.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~ 111 (222)
.++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.++++....+.. ..+++++++|+.+. +...++||+|+
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~-g-a~~V~aVD~s~~al~~a~~N~~~ngl~-~~~v~~i~~D~~~~l~~~~~~fD~Ii 614 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLG-G-ARSTTTVDMSRTYLEWAERNLRLNGLT-GRAHRLIQADCLAWLREANEQFDLIF 614 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCC-STTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHHHHHHhcCCCccEEE
Confidence 36789999999999999998864 2 346999999999999999998765431 03799999999873 33456899999
Q ss_pred Ecccc-----------cCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 112 MGYGL-----------RNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 112 ~~~~l-----------~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+.... ....+...+++.+.++|+|||.+++.+..
T Consensus 615 ~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 615 IDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp ECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 86642 22245678899999999999999977655
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=100.10 Aligned_cols=93 Identities=27% Similarity=0.308 Sum_probs=70.7
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+..+.+.+++.+...++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+. ++++++++|+.
T Consensus 27 ~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~---~~v~~~~~D~~ 100 (299)
T 2h1r_A 27 NPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGY---NNLEVYEGDAI 100 (299)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTC---CCEEC----CC
T ss_pred CHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEECchh
Confidence 3445566777777778889999999999999999865 45899999999999999988753322 58999999998
Q ss_pred CcCCCCCceeEEEEcccccCc
Q 027517 99 DLPFSDCFFDAITMGYGLRNV 119 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~~ 119 (222)
+++. ++||+|+++...+..
T Consensus 101 ~~~~--~~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 101 KTVF--PKFDVCTANIPYKIS 119 (299)
T ss_dssp SSCC--CCCSEEEEECCGGGH
T ss_pred hCCc--ccCCEEEEcCCcccc
Confidence 8764 379999998765533
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-12 Score=101.69 Aligned_cols=113 Identities=23% Similarity=0.234 Sum_probs=85.8
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+...+.+.+.+...++.+|||+|||+|.++..+++..++..+++|+|+++.+++.| .++.+.++|+.+
T Consensus 25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~~~~D~~~ 92 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGILADFLL 92 (421)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEEESCGGG
T ss_pred HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcEEeCChhh
Confidence 34445666666555567999999999999999998764557999999999988665 268899999887
Q ss_pred cCCCCCceeEEEEcccccCcc----------c-------------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 100 LPFSDCFFDAITMGYGLRNVV----------D-------------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~----------~-------------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
... .++||+|+++-.+.... + ...+++.+.+.|+|||.++++.+.
T Consensus 93 ~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 93 WEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp CCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 643 36799999975543221 1 125688999999999999887644
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=98.09 Aligned_cols=91 Identities=25% Similarity=0.348 Sum_probs=76.7
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
...+.+.+++.+...++.+|||||||+|.++..+++. ..+|+++|+++++++.++++... .++++++++|+.
T Consensus 35 d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~-----~~~v~vi~gD~l 106 (295)
T 3gru_A 35 DKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKEL-----YNNIEIIWGDAL 106 (295)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHH-----CSSEEEEESCTT
T ss_pred CHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhcc-----CCCeEEEECchh
Confidence 4455667777778888899999999999999999987 45899999999999999988752 258999999999
Q ss_pred CcCCCCCceeEEEEccccc
Q 027517 99 DLPFSDCFFDAITMGYGLR 117 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~ 117 (222)
+++++..+||.|+++..++
T Consensus 107 ~~~~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 107 KVDLNKLDFNKVVANLPYQ 125 (295)
T ss_dssp TSCGGGSCCSEEEEECCGG
T ss_pred hCCcccCCccEEEEeCccc
Confidence 8877666799999887654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-11 Score=93.71 Aligned_cols=117 Identities=18% Similarity=0.226 Sum_probs=86.8
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC-
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD- 104 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~- 104 (222)
+...+...++.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++++...+. .++.+++.|+.+++...
T Consensus 94 ~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~~ 170 (309)
T 2b9e_A 94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV---SCCELAEEDFLAVSPSDP 170 (309)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGSCTTCG
T ss_pred HHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCChHhcCcccc
Confidence 34455677889999999999999999999876667999999999999999999876553 47999999988764321
Q ss_pred --CceeEEEEccc------ccCcc-----------c-------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 105 --CFFDAITMGYG------LRNVV-----------D-------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 105 --~~~D~v~~~~~------l~~~~-----------~-------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.+||.|++... +..-+ + ...+|+...++++ ||+|+..+-+.
T Consensus 171 ~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 171 RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 47999997322 21111 1 1346778888887 89887765443
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-13 Score=102.35 Aligned_cols=115 Identities=16% Similarity=0.195 Sum_probs=85.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
......+++.+...++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++... ..+++++++|+.+
T Consensus 15 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~---~~~v~~id~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~ 86 (245)
T 1yub_A 15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQ 86 (245)
T ss_dssp TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTT
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHhcc-----CCceEEEECChhh
Confidence 334456667777778889999999999999999987 36899999999999999887641 1579999999998
Q ss_pred cCCCC-CceeEEEEcccccCcc-----------cHHHHH----HHHhcccCCCcEEEEEe
Q 027517 100 LPFSD-CFFDAITMGYGLRNVV-----------DKRKAL----EESFRVLKPGSRISVLD 143 (222)
Q Consensus 100 ~~~~~-~~~D~v~~~~~l~~~~-----------~~~~~l----~~~~~~l~~gG~l~i~~ 143 (222)
++++. ++| .|+++...+... .....+ +.+.++|+|||.+.+..
T Consensus 87 ~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 87 FQFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp TTCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cCcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 87653 578 677765443221 111223 56888999999877644
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=96.95 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=93.2
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhC-------------------------------------CCCcE
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG-------------------------------------SQGKV 62 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-------------------------------------~~~~~ 62 (222)
......++......++..|||++||+|.++..++.... ...++
T Consensus 181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 34555666777777889999999999999988876531 11479
Q ss_pred EEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCc----ccHHHHHHHHhcccCC--C
Q 027517 63 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV----VDKRKALEESFRVLKP--G 136 (222)
Q Consensus 63 ~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~l~~--g 136 (222)
+|+|+++.+++.|++++...+.. .++++.+.|+.+++.+ .+||+|+++-.+..- ++...+.+.+.+.|++ |
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~gl~--~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g 337 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAGVD--EYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKN 337 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCG--GGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBS
T ss_pred EEEECCHHHHHHHHHHHHHcCCC--CceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999998765532 3799999999987654 589999998886533 2345566767777766 8
Q ss_pred cEEEEEecC
Q 027517 137 SRISVLDFN 145 (222)
Q Consensus 137 G~l~i~~~~ 145 (222)
+.+++.+..
T Consensus 338 ~~~~iit~~ 346 (385)
T 3ldu_A 338 WSYYLITSY 346 (385)
T ss_dssp CEEEEEESC
T ss_pred CEEEEEECC
Confidence 888877543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-11 Score=96.36 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=91.4
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCC-------------------------------------CCcE
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS-------------------------------------QGKV 62 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-------------------------------------~~~~ 62 (222)
......++......++..|||++||+|.++..++..... ..++
T Consensus 187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 344456667777788889999999999998877765321 1469
Q ss_pred EEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCc----ccHHHHHHHHhcccCC--C
Q 027517 63 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV----VDKRKALEESFRVLKP--G 136 (222)
Q Consensus 63 ~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~l~~--g 136 (222)
+|+|+++.+++.|++++...+.. .++.+.+.|+.+++.+ .+||+|+++-.+..- .+...+.+.+.+.|++ |
T Consensus 267 ~GvDid~~al~~Ar~Na~~~gl~--~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g 343 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAGLG--DLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPT 343 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCT--TCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred EEEECCHHHHHHHHHHHHHcCCC--CceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCC
Confidence 99999999999999998765532 4699999999987654 579999999775432 2234455656666655 8
Q ss_pred cEEEEEecC
Q 027517 137 SRISVLDFN 145 (222)
Q Consensus 137 G~l~i~~~~ 145 (222)
|.+++.+..
T Consensus 344 ~~~~iit~~ 352 (393)
T 3k0b_A 344 WSVYVLTSY 352 (393)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEECC
Confidence 888887653
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.33 E-value=6e-12 Score=101.03 Aligned_cols=124 Identities=20% Similarity=0.221 Sum_probs=93.2
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhC------------CCCcEEEEeCChhHHHHHhcchhhhhhhcC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG------------SQGKVIGLDFSKNQLSMASSRQDLVSKACY 87 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 87 (222)
+...+.+++.+...++.+|||.|||+|.++..+++.+. ...+++|+|+++.+++.|+.++...+...
T Consensus 157 ~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~- 235 (445)
T 2okc_A 157 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT- 235 (445)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS-
T ss_pred HHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc-
Confidence 34455666777767788999999999999988887541 13579999999999999998765433210
Q ss_pred CCeeEEeCCCCCcCCCCCceeEEEEcccccCccc-----------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 88 KNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD-----------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 88 ~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-----------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.++.+.++|....+.. .+||+|+++.++..... ...+++++.+.|+|||++.++.+.
T Consensus 236 ~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 236 DRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp SCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 1678899998775543 47999999987765421 137899999999999999887653
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-11 Score=94.71 Aligned_cols=123 Identities=13% Similarity=0.065 Sum_probs=93.2
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCC-------------------------------------CCcE
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS-------------------------------------QGKV 62 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-------------------------------------~~~~ 62 (222)
......++......++..++|.+||+|.++...+..... ..++
T Consensus 180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 345566677777788899999999999999877765321 1469
Q ss_pred EEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCc----ccHHHHHHHHhcccCC--C
Q 027517 63 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV----VDKRKALEESFRVLKP--G 136 (222)
Q Consensus 63 ~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~l~~--g 136 (222)
+|+|+++.+++.|++++...+.. .++.+.+.|+.+++.+ .+||+|+++-.+..- .+...+.+.+.+.||+ |
T Consensus 260 ~GvDid~~al~~Ar~Na~~~gl~--~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g 336 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVGLE--DVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKT 336 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCT--TTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred EEEECCHHHHHHHHHHHHHcCCC--CceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999998765543 4699999999987754 479999999776532 2345666666666666 8
Q ss_pred cEEEEEecC
Q 027517 137 SRISVLDFN 145 (222)
Q Consensus 137 G~l~i~~~~ 145 (222)
|.+++....
T Consensus 337 ~~~~iit~~ 345 (384)
T 3ldg_A 337 WSQFILTND 345 (384)
T ss_dssp SEEEEEESC
T ss_pred cEEEEEECC
Confidence 988887653
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-11 Score=96.39 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=77.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+|||+|||+|.++..+++. ..+|+++|+++.+++.++++....+. . +.++++|+.+... .+||+|+
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl---~-v~~~~~d~~~~~~--~~fD~Vv 358 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNV---D-AEFEVASDREVSV--KGFDTVI 358 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTC---C-EEEEECCTTTCCC--TTCSEEE
T ss_pred cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCC---c-EEEEECChHHcCc--cCCCEEE
Confidence 456789999999999999999875 45899999999999999998765432 3 8999999988642 2799999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+...-.... ..+++.+. .|+|+|.+++.+
T Consensus 359 ~dPPr~g~~--~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 359 VDPPRAGLH--PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp ECCCTTCSC--HHHHHHHH-HHCCSEEEEEES
T ss_pred EcCCccchH--HHHHHHHH-hcCCCcEEEEEC
Confidence 965532221 34555554 489999998864
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.30 E-value=7.9e-11 Score=87.06 Aligned_cols=89 Identities=12% Similarity=0.166 Sum_probs=70.0
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
...+...+++.+...++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++.... ++++++++|+.
T Consensus 15 d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~-----~~v~~~~~D~~ 86 (244)
T 1qam_A 15 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDH-----DNFQVLNKDIL 86 (244)
T ss_dssp CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC-----CSEEEECCCGG
T ss_pred CHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc---CCeEEEEECCHHHHHHHHHhhccC-----CCeEEEEChHH
Confidence 3455566777777778889999999999999999987 368999999999999999886431 58999999999
Q ss_pred CcCCCC-CceeEEEEcccc
Q 027517 99 DLPFSD-CFFDAITMGYGL 116 (222)
Q Consensus 99 ~~~~~~-~~~D~v~~~~~l 116 (222)
+++++. .+| .|+++..+
T Consensus 87 ~~~~~~~~~~-~vv~nlPy 104 (244)
T 1qam_A 87 QFKFPKNQSY-KIFGNIPY 104 (244)
T ss_dssp GCCCCSSCCC-EEEEECCG
T ss_pred hCCcccCCCe-EEEEeCCc
Confidence 887653 345 45555444
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=91.15 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=71.8
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+..+...+++.+...++.+|||||||+|.++..+++. ..+++++|+++++++.++++... .++++++++|+.
T Consensus 14 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D~~ 85 (255)
T 3tqs_A 14 DSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ-----QKNITIYQNDAL 85 (255)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT-----CTTEEEEESCTT
T ss_pred CHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcchH
Confidence 3455567778888888999999999999999999976 36899999999999999988754 158999999999
Q ss_pred CcCCC----CCceeEEEEcccc
Q 027517 99 DLPFS----DCFFDAITMGYGL 116 (222)
Q Consensus 99 ~~~~~----~~~~D~v~~~~~l 116 (222)
+++++ .++|| |+++...
T Consensus 86 ~~~~~~~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 86 QFDFSSVKTDKPLR-VVGNLPY 106 (255)
T ss_dssp TCCGGGSCCSSCEE-EEEECCH
T ss_pred hCCHHHhccCCCeE-EEecCCc
Confidence 87653 24688 6665544
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=90.57 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=74.4
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+..+.+.+++.+...++ +|||+|||+|.++..+++. +.+|+++|+++++++.++++... .+++++++|+.
T Consensus 32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~~------~~v~vi~~D~l 101 (271)
T 3fut_A 32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLSG------LPVRLVFQDAL 101 (271)
T ss_dssp CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTTT------SSEEEEESCGG
T ss_pred CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcCC------CCEEEEECChh
Confidence 34566777888888888 9999999999999999986 35899999999999999988641 48999999999
Q ss_pred CcCCCC-CceeEEEEcccccCc
Q 027517 99 DLPFSD-CFFDAITMGYGLRNV 119 (222)
Q Consensus 99 ~~~~~~-~~~D~v~~~~~l~~~ 119 (222)
+++++. ..+|.|+++...+--
T Consensus 102 ~~~~~~~~~~~~iv~NlPy~is 123 (271)
T 3fut_A 102 LYPWEEVPQGSLLVANLPYHIA 123 (271)
T ss_dssp GSCGGGSCTTEEEEEEECSSCC
T ss_pred hCChhhccCccEEEecCccccc
Confidence 877643 258999988766543
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-10 Score=88.43 Aligned_cols=176 Identities=14% Similarity=0.074 Sum_probs=98.7
Q ss_pred CCeEEEecCCCChhHHHHHH--------Hh------CCCCcEEEEeCChhHHHHHhcchhhhh-----------hhcCCC
Q 027517 35 GDNVLDVCCGSGDLSFLLSE--------QV------GSQGKVIGLDFSKNQLSMASSRQDLVS-----------KACYKN 89 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~--------~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~-----------~~~~~~ 89 (222)
..+|+|+|||+|..+..+.. .. .+..+|..-|+.....+..=+.+.... ....+.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 46899999999999887622 21 144578888976654433222221110 000011
Q ss_pred -eeEEeCCCCCcCCCCCceeEEEEcccccCcc--------------------------------------cHHHHHHHHh
Q 027517 90 -IEWVEGDALDLPFSDCFFDAITMGYGLRNVV--------------------------------------DKRKALEESF 130 (222)
Q Consensus 90 -i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--------------------------------------~~~~~l~~~~ 130 (222)
+.-+.+....-.+|++++|+|+++.++|+++ |...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223344444457788999999999999986 2334688889
Q ss_pred cccCCCcEEEEEecCCCCCchhh-----HHH-HHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHH-HcCCe
Q 027517 131 RVLKPGSRISVLDFNKSTQPFTT-----AIQ-EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLAL-EIGFS 203 (222)
Q Consensus 131 ~~l~~gG~l~i~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gf~ 203 (222)
+.|+|||++++......+..... ... ..+...+..-...+....+..... .....+.+.+|+..+++ +.||+
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f-~~P~y~ps~~E~~~~l~~~~~F~ 291 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGF-NIPVYAPSLQDFKEVVDANGSFA 291 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSC-CCCBCCCCHHHHHHHHHHHCSEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccC-CccccCCCHHHHHHHHHhcCCcE
Confidence 99999999999888775532111 000 001000000000000000000000 01124579999999998 59999
Q ss_pred EEEEeeec
Q 027517 204 RAKHYELS 211 (222)
Q Consensus 204 ~~~~~~~~ 211 (222)
+.....+.
T Consensus 292 I~~le~~~ 299 (374)
T 3b5i_A 292 IDKLVVYK 299 (374)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 87765443
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-10 Score=87.31 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=84.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh--hhcCCCeeEEeCCCCCc-CCCCCcee
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--KACYKNIEWVEGDALDL-PFSDCFFD 108 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~d~~~~-~~~~~~~D 108 (222)
.+..++||-||.|.|..+..+++. .+..+++.+|+++..++.+++.+.... ....++++++.+|.... ....++||
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~-~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yD 159 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRH-KNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFD 159 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHc-CCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCC
Confidence 455679999999999999999987 345689999999999999998874321 11227899999999874 33457899
Q ss_pred EEEEcccccCcc----cHHHHHHHHhcccCCCcEEEEEe
Q 027517 109 AITMGYGLRNVV----DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 109 ~v~~~~~l~~~~----~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|+.-..-..-+ -...+++.+++.|+|||.++...
T Consensus 160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 999744311111 12578999999999999998753
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=8.2e-11 Score=96.31 Aligned_cols=124 Identities=14% Similarity=0.082 Sum_probs=90.6
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCC-----------------CCcEEEEeCChhHHHHHhcchhhhhh
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS-----------------QGKVIGLDFSKNQLSMASSRQDLVSK 84 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----------------~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (222)
..+.+++.+...++.+|+|.|||+|.++..+.+.+.. ...++|+|+++.++..|+.++...+.
T Consensus 157 iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi 236 (541)
T 2ar0_A 157 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 236 (541)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC
Confidence 4455667776677889999999999999888776421 13799999999999999987644332
Q ss_pred hc--CCCeeEEeCCCCCcC-CCCCceeEEEEcccccCccc--------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 85 AC--YKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNVVD--------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 85 ~~--~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~--------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.. ..++.+.++|....+ ....+||+|+++-++..... ...+++++.+.|+|||++.++.+.
T Consensus 237 ~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 237 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 10 002678889977643 23467999999887664422 236899999999999999887654
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.9e-11 Score=90.45 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=73.1
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+...+++.+...++.+|||+|||+|..+..+++.+ ++.+++++|.|+.+++.+++++...+ .++.++++|+.+++
T Consensus 14 Ll~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~g----~~v~~v~~d~~~l~ 88 (301)
T 1m6y_A 14 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREAD 88 (301)
T ss_dssp THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHH
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEECCHHHHH
Confidence 44566677777888999999999999999999986 36799999999999999999876543 48999999988764
Q ss_pred --CC---CCceeEEEEcccc
Q 027517 102 --FS---DCFFDAITMGYGL 116 (222)
Q Consensus 102 --~~---~~~~D~v~~~~~l 116 (222)
.. ..+||.|++....
T Consensus 89 ~~l~~~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 89 FLLKTLGIEKVDGILMDLGV 108 (301)
T ss_dssp HHHHHTTCSCEEEEEEECSC
T ss_pred HHHHhcCCCCCCEEEEcCcc
Confidence 11 1479999986543
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-10 Score=88.97 Aligned_cols=161 Identities=12% Similarity=0.070 Sum_probs=95.0
Q ss_pred CCeEEEecCCCChhHHHHHHH-------------h---CCCCcEEEEeCC-----------hhHHHHHhcchhhhhhhcC
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQ-------------V---GSQGKVIGLDFS-----------KNQLSMASSRQDLVSKACY 87 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~-------------~---~~~~~~~~~D~~-----------~~~~~~~~~~~~~~~~~~~ 87 (222)
..+|+|+||++|..+..+... . .|..+|+..|+. +...+..++.. +..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~---g~~-- 127 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN---GRK-- 127 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT---CCC--
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc---cCC--
Confidence 468999999999999877665 1 134477888876 22222221111 000
Q ss_pred CCeeEEeCC---CCCcCCCCCceeEEEEcccccCcccHH---------------------------------------HH
Q 027517 88 KNIEWVEGD---ALDLPFSDCFFDAITMGYGLRNVVDKR---------------------------------------KA 125 (222)
Q Consensus 88 ~~i~~~~~d---~~~~~~~~~~~D~v~~~~~l~~~~~~~---------------------------------------~~ 125 (222)
.+..++.+. +..-.+|.+++|+|+++.++||+.+.+ .+
T Consensus 128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~F 207 (384)
T 2efj_A 128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTF 207 (384)
T ss_dssp TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 123444443 333457889999999999999985432 12
Q ss_pred HHHHhcccCCCcEEEEEecCCCCC--c------hhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHH
Q 027517 126 LEESFRVLKPGSRISVLDFNKSTQ--P------FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLA 197 (222)
Q Consensus 126 l~~~~~~l~~gG~l~i~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (222)
|+..++.|+|||++++......+. . ....+.....+..... +..... .....+.+.+|++.++
T Consensus 208 L~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~--------ek~dsf-~~P~y~ps~~E~~~~l 278 (384)
T 2efj_A 208 LRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEE--------EKLDSF-NVPIYAPSTEEVKRIV 278 (384)
T ss_dssp HHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCH--------HHHHTC-CCSBCCCCHHHHHHHH
T ss_pred HHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcch--------hhhccc-CCcccCCCHHHHHHHH
Confidence 566689999999999998887664 2 1122222111110000 000000 0113467999999999
Q ss_pred HHcC-CeEEEEee
Q 027517 198 LEIG-FSRAKHYE 209 (222)
Q Consensus 198 ~~~G-f~~~~~~~ 209 (222)
++.| |++.....
T Consensus 279 e~~g~F~i~~le~ 291 (384)
T 2efj_A 279 EEEGSFEILYLET 291 (384)
T ss_dssp HHHCSEEEEEEEE
T ss_pred HHcCCceEEEEEE
Confidence 9985 78776543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.2e-11 Score=92.79 Aligned_cols=102 Identities=19% Similarity=0.160 Sum_probs=81.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh---------------hhhcCCCeeEEeCCCC
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV---------------SKACYKNIEWVEGDAL 98 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~~~d~~ 98 (222)
++.+|||+|||+|..+..+++.. +..+|+++|+++++++.+++++... +. .+++++++|+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl---~~i~v~~~Da~ 122 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE---KTIVINHDDAN 122 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS---SEEEEEESCHH
T ss_pred CCCEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC---CceEEEcCcHH
Confidence 67899999999999999999885 3458999999999999999998765 32 34899999987
Q ss_pred CcCC-CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 99 DLPF-SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 99 ~~~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++.. ..++||+|++.- . .....+++.+.+.+++||.++++.
T Consensus 123 ~~~~~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 123 RLMAERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHHHSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHhccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 6421 135799999643 2 123678888999999999888765
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-09 Score=92.07 Aligned_cols=123 Identities=16% Similarity=0.122 Sum_probs=88.9
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHh-----------------------------------------CC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV-----------------------------------------GS 58 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-----------------------------------------~~ 58 (222)
......++......++..|||.+||+|.++...+... .+
T Consensus 176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~ 255 (703)
T 3v97_A 176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY 255 (703)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence 3455666777777788899999999999988776542 01
Q ss_pred CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC--CCceeEEEEcccccCc----ccHHHHHHHH---
Q 027517 59 QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS--DCFFDAITMGYGLRNV----VDKRKALEES--- 129 (222)
Q Consensus 59 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~----~~~~~~l~~~--- 129 (222)
..+++|+|+++.+++.|+.++...+.. ..+.+.++|+.++..+ .++||+|+++-.+..- ++...+.+.+
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~agv~--~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~ 333 (703)
T 3v97_A 256 SSHFYGSDSDARVIQRARTNARLAGIG--ELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRI 333 (703)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCG--GGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCC--CceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHH
Confidence 247999999999999999998766543 3589999999886433 3379999999776432 2233444444
Q ss_pred hcccCCCcEEEEEec
Q 027517 130 FRVLKPGSRISVLDF 144 (222)
Q Consensus 130 ~~~l~~gG~l~i~~~ 144 (222)
.+.+.|||.+++...
T Consensus 334 lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 334 MKNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHHCTTCEEEEEES
T ss_pred HHhhCCCCeEEEEeC
Confidence 444558999988743
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.1e-11 Score=92.54 Aligned_cols=104 Identities=16% Similarity=0.052 Sum_probs=82.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCC-CcEEEEeCChhHHHHHhcchhhhhhhcCCC-eeEEeCCCCCcC--CCCCcee
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKN-IEWVEGDALDLP--FSDCFFD 108 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~--~~~~~~D 108 (222)
.++.+|||++||+|.++..++... .+ .+|+++|+++.+++.+++++...+.. .+ ++++++|+.++. ...++||
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~-~ga~~V~avDi~~~av~~~~~N~~~Ngl~--~~~v~v~~~Da~~~l~~~~~~~fD 127 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLET-SCVEKAYANDISSKAIEIMKENFKLNNIP--EDRYEIHGMEANFFLRKEWGFGFD 127 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHC-SCEEEEEEECSCHHHHHHHHHHHHHTTCC--GGGEEEECSCHHHHHHSCCSSCEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHhCCC--CceEEEEeCCHHHHHHHhhCCCCc
Confidence 457899999999999999999874 23 48999999999999999998766532 23 899999987642 2235799
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|++.- . .....+++.+.+.|+|||.++++.
T Consensus 128 ~V~lDP-~---g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 128 YVDLDP-F---GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECC-C---cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 999865 2 223568888899999999888876
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=86.43 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=69.3
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCC-CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
+..+.+.+++.+...++.+|||||||+|.++..+++.... ..+++++|+++++++.++++. . .+++++++|+
T Consensus 27 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~----~~v~~i~~D~ 99 (279)
T 3uzu_A 27 DHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---G----ELLELHAGDA 99 (279)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G----GGEEEEESCG
T ss_pred CHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C----CCcEEEECCh
Confidence 3456677778888888999999999999999999988532 234999999999999999883 1 5899999999
Q ss_pred CCcCCCCC------ceeEEEEccc
Q 027517 98 LDLPFSDC------FFDAITMGYG 115 (222)
Q Consensus 98 ~~~~~~~~------~~D~v~~~~~ 115 (222)
.++++++- ..+.|+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 100 LTFDFGSIARPGDEPSLRIIGNLP 123 (279)
T ss_dssp GGCCGGGGSCSSSSCCEEEEEECC
T ss_pred hcCChhHhcccccCCceEEEEccC
Confidence 98765321 2345666554
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=90.23 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=78.1
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+...+.+..... +.+|||+|||+|.++..+++. ..+|+++|+++.+++.++++....+. .+++++.+|+.+..
T Consensus 202 l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~---~~v~~~~~d~~~~~ 274 (369)
T 3bt7_A 202 MLEWALDVTKGS-KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHI---DNVQIIRMAAEEFT 274 (369)
T ss_dssp HHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTC---CSEEEECCCSHHHH
T ss_pred HHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEECCHHHHH
Confidence 334555555443 568999999999999988864 35899999999999999998865443 48999999987642
Q ss_pred --CCC--------------CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 --FSD--------------CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 --~~~--------------~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
... .+||+|++...-.. +..++.+.|+++|.++.+..
T Consensus 275 ~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g------~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 275 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG------LDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp HHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC------CCHHHHHHHTTSSEEEEEES
T ss_pred HHHhhccccccccccccccCCCCEEEECcCccc------cHHHHHHHHhCCCEEEEEEC
Confidence 111 27999998543221 22345555668888776643
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.1e-10 Score=82.99 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=72.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh------CCC-----CcEEEEeCCh---hHHHH-----------Hhcchhhh-----
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQV------GSQ-----GKVIGLDFSK---NQLSM-----------ASSRQDLV----- 82 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~------~~~-----~~~~~~D~~~---~~~~~-----------~~~~~~~~----- 82 (222)
.+..+|||+|+|+|..+..+++.. .+. .+++++|..+ +.+.. +++.....
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 355699999999999998877654 443 4899999877 44443 33332210
Q ss_pred ------hhhcCCCeeEEeCCCCC-cCCCC----CceeEEEEcc-cccCccc--HHHHHHHHhcccCCCcEEEE
Q 027517 83 ------SKACYKNIEWVEGDALD-LPFSD----CFFDAITMGY-GLRNVVD--KRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 83 ------~~~~~~~i~~~~~d~~~-~~~~~----~~~D~v~~~~-~l~~~~~--~~~~l~~~~~~l~~gG~l~i 141 (222)
-.....++.+..+|+.+ ++... ..||+|+.-. +-..-++ ...+++.+++.|+|||+++.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 00111357789999876 33222 2799999853 2222233 36789999999999999874
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=6e-10 Score=82.43 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=68.7
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+..+.+.+++.+...++.+|||+|||+|.++..+++. +..+++++|+++.+++.++++ . . .+++++++|+.
T Consensus 16 d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~-~--~----~~v~~i~~D~~ 86 (249)
T 3ftd_A 16 SEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI-G--D----ERLEVINEDAS 86 (249)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS-C--C----TTEEEECSCTT
T ss_pred CHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc-c--C----CCeEEEEcchh
Confidence 3455667777777788899999999999999999875 246899999999999999887 2 1 58999999999
Q ss_pred CcCCCC--CceeEEEEcccc
Q 027517 99 DLPFSD--CFFDAITMGYGL 116 (222)
Q Consensus 99 ~~~~~~--~~~D~v~~~~~l 116 (222)
++++++ +.+ .|+++...
T Consensus 87 ~~~~~~~~~~~-~vv~NlPy 105 (249)
T 3ftd_A 87 KFPFCSLGKEL-KVVGNLPY 105 (249)
T ss_dssp TCCGGGSCSSE-EEEEECCT
T ss_pred hCChhHccCCc-EEEEECch
Confidence 877543 223 55555544
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-10 Score=84.52 Aligned_cols=91 Identities=10% Similarity=0.077 Sum_probs=68.1
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+..+.+.+++.+...++.+|||||||+|.++. +. . ....+++++|+++++++.++++.... ++++++++|+.
T Consensus 6 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~~-----~~v~~i~~D~~ 77 (252)
T 1qyr_A 6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFLG-----PKLTIYQQDAM 77 (252)
T ss_dssp CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTTG-----GGEEEECSCGG
T ss_pred CHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhccC-----CceEEEECchh
Confidence 34455667777777888899999999999999 54 4 22223999999999999999887532 48999999998
Q ss_pred CcCCCC-----CceeEEEEccccc
Q 027517 99 DLPFSD-----CFFDAITMGYGLR 117 (222)
Q Consensus 99 ~~~~~~-----~~~D~v~~~~~l~ 117 (222)
++++++ +..|.|+++...+
T Consensus 78 ~~~~~~~~~~~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 78 TFNFGELAEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp GCCHHHHHHHHTSCEEEEEECCTT
T ss_pred hCCHHHhhcccCCceEEEECCCCC
Confidence 876432 1346777776543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.9e-11 Score=87.05 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=66.2
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCCh-------hHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK-------NQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
...+...++.+|||+|||+|..+..+++. +.+|+++|+++ ++++.++++....+.. .+++++++|+.+
T Consensus 76 ~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~--~ri~~~~~d~~~ 150 (258)
T 2r6z_A 76 AKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA--ARINLHFGNAAE 150 (258)
T ss_dssp HHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH--TTEEEEESCHHH
T ss_pred HHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc--cCeEEEECCHHH
Confidence 33344456789999999999999999875 46899999999 9999998876554432 359999999887
Q ss_pred c-C-CCC--CceeEEEEcccccC
Q 027517 100 L-P-FSD--CFFDAITMGYGLRN 118 (222)
Q Consensus 100 ~-~-~~~--~~~D~v~~~~~l~~ 118 (222)
. + +++ ++||+|++...+.+
T Consensus 151 ~l~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 151 QMPALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHHHHHHHCCCSEEEECCCC--
T ss_pred HHHhhhccCCCccEEEECCCCCC
Confidence 4 2 333 57999999876654
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-09 Score=84.26 Aligned_cols=163 Identities=11% Similarity=0.130 Sum_probs=100.8
Q ss_pred CCeEEEecCCCChhHHHHHHH---------------hCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE---eCC
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQ---------------VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV---EGD 96 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~---------------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~d 96 (222)
..+|+|+||++|..+..+... -.|..+|+..|+.....+..-+.+...... .+..+. .+.
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~--~~~~f~~gvpgS 129 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV--DGVCFINGVPGS 129 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC--TTCEEEEEEESC
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhccc--CCCEEEEecchh
Confidence 458999999999877654432 124457899999888877776665432100 122333 344
Q ss_pred CCCcCCCCCceeEEEEcccccCcccH---------------------------------HHHHHHHhcccCCCcEEEEEe
Q 027517 97 ALDLPFSDCFFDAITMGYGLRNVVDK---------------------------------RKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 97 ~~~~~~~~~~~D~v~~~~~l~~~~~~---------------------------------~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+..-.+|.+++|+|+++.++|++.+. ..+|+..++.|+|||++++..
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 44456788999999999999998542 234888899999999999988
Q ss_pred cCCCCCc--------hhhHHHHHH----hhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCC-eEEEEe
Q 027517 144 FNKSTQP--------FTTAIQEWM----IDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGF-SRAKHY 208 (222)
Q Consensus 144 ~~~~~~~--------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf-~~~~~~ 208 (222)
....+.. .+..+...+ .+..... ... +.+ .....+.+.+|++.++++.|. ++....
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~-ek~----d~f----~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEE-EKM----DKF----NIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCC-STT----GGG----CCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccch-hhh----hcc----CCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 7765542 122222211 1111000 000 000 011246799999999999964 665543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-09 Score=89.30 Aligned_cols=102 Identities=13% Similarity=0.049 Sum_probs=71.4
Q ss_pred CCeEEEecCCCChhHHHH---HHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 35 GDNVLDVCCGSGDLSFLL---SEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l---~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
...|||+|||+|-++... ++..+...+|+++|-++.+ ..+++.....+.+ ++|+++.+|++++..| +++|+|+
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A-~~a~~~v~~N~~~--dkVtVI~gd~eev~LP-EKVDIIV 433 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA-VVTLENWQFEEWG--SQVTVVSSDMREWVAP-EKADIIV 433 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH-HHHHHHHHHHTTG--GGEEEEESCTTTCCCS-SCEEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH-HHHHHHHHhccCC--CeEEEEeCcceeccCC-cccCEEE
Confidence 357999999999985443 3332222378999999854 4556555554444 6899999999998776 6799999
Q ss_pred Eccc--ccCcccHHHHHHHHhcccCCCcEEE
Q 027517 112 MGYG--LRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 112 ~~~~--l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
+=.. +-..+....++....+.|||||.++
T Consensus 434 SEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 434 SELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 7221 1111234467888889999999875
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2e-09 Score=79.23 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=72.7
Q ss_pred HhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCce
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 107 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (222)
+.....++.+|||||||+|.++..+++.. +..++.++|+..++....... ...+ .++.....++....++..+|
T Consensus 68 ek~~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~-~~~g----~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 68 ERGYVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNV-QSLG----WNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp HTTSSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCC-CBTT----GGGEEEECSCCTTTSCCCCC
T ss_pred HhCCCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCccccccc-CcCC----CCeEEEeccceehhcCCCCc
Confidence 33455778899999999999999888652 233688888875531111110 0000 14555666655455566789
Q ss_pred eEEEEcccccCcc----cH---HHHHHHHhcccCCC-cEEEEEecC
Q 027517 108 DAITMGYGLRNVV----DK---RKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 108 D~v~~~~~l~~~~----~~---~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
|+|++..+.+ .. |. ..+++.+.++|+|| |.+++-.+.
T Consensus 142 DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 142 DTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred cEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 9999988666 21 21 23468888999999 999885555
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-09 Score=88.20 Aligned_cols=123 Identities=15% Similarity=0.073 Sum_probs=86.9
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCC--------------CCcEEEEeCChhHHHHHhcchhhhhhh
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS--------------QGKVIGLDFSKNQLSMASSRQDLVSKA 85 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~--------------~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (222)
+...+.+++.+...++ +|+|.+||+|.++..+.+.+.. ...++|+|+++.++..|+.++...+..
T Consensus 231 ~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~ 309 (544)
T 3khk_A 231 KSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID 309 (544)
T ss_dssp HHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 3445566666665555 9999999999998877654310 347999999999999999876544322
Q ss_pred cCCCeeEEeCCCCCcC-CCCCceeEEEEcccccCc-------------------------cc----HHHHHHHHhcccCC
Q 027517 86 CYKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNV-------------------------VD----KRKALEESFRVLKP 135 (222)
Q Consensus 86 ~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~-------------------------~~----~~~~l~~~~~~l~~ 135 (222)
.++.+.++|....+ .+..+||+|+++-.+..- +. .-.+++++.+.|+|
T Consensus 310 --~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~ 387 (544)
T 3khk_A 310 --FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP 387 (544)
T ss_dssp --CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE
T ss_pred --cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc
Confidence 23444677765543 345689999998776631 10 12578999999999
Q ss_pred CcEEEEEecC
Q 027517 136 GSRISVLDFN 145 (222)
Q Consensus 136 gG~l~i~~~~ 145 (222)
||++.++.+.
T Consensus 388 gGr~aiVlP~ 397 (544)
T 3khk_A 388 TGSMALLLAN 397 (544)
T ss_dssp EEEEEEEEET
T ss_pred CceEEEEecc
Confidence 9998887654
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-09 Score=80.17 Aligned_cols=107 Identities=12% Similarity=0.100 Sum_probs=69.0
Q ss_pred HHHHhhCCCCC--CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh----hh--cCCCeeEEeCC
Q 027517 25 MAVSWSGAKTG--DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----KA--CYKNIEWVEGD 96 (222)
Q Consensus 25 ~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~----~~--~~~~i~~~~~d 96 (222)
.+.+.+...++ .+|||+|||+|..+..++.. +++|+++|.++.+.+.+++.+.... .. ...+++++++|
T Consensus 77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 34455555666 89999999999999999987 4589999999977555554433211 00 00378999999
Q ss_pred CCCc-CCCCCceeEEEEcccccCcccHHHHHHHHhcccCC
Q 027517 97 ALDL-PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKP 135 (222)
Q Consensus 97 ~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~ 135 (222)
..+. +...++||+|++...+.+-.. ...+++..+.+++
T Consensus 154 ~~~~L~~~~~~fDvV~lDP~y~~~~~-saavkk~~~~lr~ 192 (258)
T 2oyr_A 154 SLTALTDITPRPQVVYLDPMFPHKQK-SALVKKEMRVFQS 192 (258)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCCCCC------HHHHHHHH
T ss_pred HHHHHHhCcccCCEEEEcCCCCCccc-chHHHHHHHHHHH
Confidence 8773 322246999999887765432 2334444444444
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-08 Score=83.69 Aligned_cols=123 Identities=18% Similarity=0.152 Sum_probs=88.7
Q ss_pred HHHHHHHhhC----CCCCCeEEEecCCCChhHHHHHHHhC--CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC
Q 027517 22 WKRMAVSWSG----AKTGDNVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 95 (222)
Q Consensus 22 ~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 95 (222)
..+.+.+.+. ..++.+|+|.+||+|.++..+.+.+. ...+++|+|+++.++..|+.++...+.. ..++.+.++
T Consensus 205 Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-~~~~~I~~g 283 (542)
T 3lkd_A 205 VAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP-IENQFLHNA 283 (542)
T ss_dssp HHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC-GGGEEEEES
T ss_pred HHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC-cCccceEec
Confidence 4445555554 34677999999999999988887752 2458999999999999998876443321 025688899
Q ss_pred CCCCc--C-CCCCceeEEEEcccccCcc--------c---------------HHHHHHHHhcccC-CCcEEEEEecC
Q 027517 96 DALDL--P-FSDCFFDAITMGYGLRNVV--------D---------------KRKALEESFRVLK-PGSRISVLDFN 145 (222)
Q Consensus 96 d~~~~--~-~~~~~~D~v~~~~~l~~~~--------~---------------~~~~l~~~~~~l~-~gG~l~i~~~~ 145 (222)
|.... + ....+||+|+++-++..-. + .-.+++++.+.|+ |||++.++.+.
T Consensus 284 DtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 284 DTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp CTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred ceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 98765 3 3456899999986653110 0 1247899999999 99999887654
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-08 Score=72.16 Aligned_cols=101 Identities=11% Similarity=0.017 Sum_probs=73.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-------------
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------------- 100 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------------- 100 (222)
+..+|||+|| |..+..+++. ++++++.+|.+++..+.+++.+...+.....+++++.+|+.+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred CCCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 5679999998 4666666653 3679999999999999999988765430025899999996542
Q ss_pred --C--------C-CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 --P--------F-SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 --~--------~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+ . ..++||+|+.-.-. ....+..+.+.|+|||++++-+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSSCEEEEETT
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCCCeEEEEeC
Confidence 1 1 13679999997632 2355666778999999996644
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-09 Score=88.16 Aligned_cols=103 Identities=14% Similarity=-0.014 Sum_probs=71.8
Q ss_pred CCeEEEecCCCChhHHHHHHH---hC---------CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQ---VG---------SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~---~~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
...|||+|||+|-++...++. .+ ...+|+++|.++.+....+.+.. .+.+ .+|+++.+|++++..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~--d~VtVI~gd~eev~l 486 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWK--RRVTIIESDMRSLPG 486 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTT--TCSEEEESCGGGHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCC--CeEEEEeCchhhccc
Confidence 458999999999997533222 11 12389999999977765555442 2222 579999999999765
Q ss_pred C-----CCceeEEEEcccccCc--ccHHHHHHHHhcccCCCcEEE
Q 027517 103 S-----DCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 103 ~-----~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~l~~gG~l~ 140 (222)
+ .+++|+|++=..-... +-....|....+.|||||.++
T Consensus 487 p~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 487 IAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 3 4789999974432111 224567888889999999875
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-08 Score=77.29 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=88.1
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh---cCCCeeEEeCCCCCcC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA---CYKNIEWVEGDALDLP 101 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~ 101 (222)
.....+...|+.+|||++||+|.-+.++++.. ....++++|+++.-++..++++.+.+.. ...++.+...|...++
T Consensus 139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~ 217 (359)
T 4fzv_A 139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWG 217 (359)
T ss_dssp HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHH
T ss_pred HHHHHhCCCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcc
Confidence 34455677899999999999999999999874 5568999999999998888877654321 1147888888887753
Q ss_pred -CCCCceeEEEEcccc--------cCccc----------------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 102 -FSDCFFDAITMGYGL--------RNVVD----------------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l--------~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
...++||.|++-... ..-++ ..++|....+.|||||+|+-++-+-
T Consensus 218 ~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 218 ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 234689999953221 11111 2467888999999999987765443
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-09 Score=85.49 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=61.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh--hhhcCCCeeEEeCCCCCc-CC-CCCceeE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV--SKACYKNIEWVEGDALDL-PF-SDCFFDA 109 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~d~~~~-~~-~~~~~D~ 109 (222)
++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++.+.... +. .+++++++|+.+. +. +.++||+
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl---~~i~~i~~Da~~~L~~~~~~~fDv 166 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG---KDVNILTGDFKEYLPLIKTFHPDY 166 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT---CEEEEEESCGGGSHHHHHHHCCSE
T ss_pred CCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC---CcEEEEECcHHHhhhhccCCCceE
Confidence 4789999999999999988865 469999999999999999998654 32 4799999999874 22 2347999
Q ss_pred EEEcc
Q 027517 110 ITMGY 114 (222)
Q Consensus 110 v~~~~ 114 (222)
|++.-
T Consensus 167 V~lDP 171 (410)
T 3ll7_A 167 IYVDP 171 (410)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99853
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.8e-09 Score=77.34 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=72.9
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
+.+.....++.+|||||||+|.++..+++.. +..++.++|+...+...+... ...+ .++.....++....++..
T Consensus 82 i~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~-~~~g----~~ii~~~~~~dv~~l~~~ 155 (282)
T 3gcz_A 82 MEERGYVKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMR-TTLG----WNLIRFKDKTDVFNMEVI 155 (282)
T ss_dssp HHHTTSCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCC-CBTT----GGGEEEECSCCGGGSCCC
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCcccccccc-ccCC----CceEEeeCCcchhhcCCC
Confidence 3343456788899999999999999988653 334789999987643222210 0001 234444433333334567
Q ss_pred ceeEEEEcccccCcc----cH---HHHHHHHhcccCCC--cEEEEEecC
Q 027517 106 FFDAITMGYGLRNVV----DK---RKALEESFRVLKPG--SRISVLDFN 145 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~----~~---~~~l~~~~~~l~~g--G~l~i~~~~ 145 (222)
++|+|+|..+.+ .. |. ..+++-+.++|+|| |.+++-.+.
T Consensus 156 ~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 156 PGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 899999988766 32 11 23577778899999 999886655
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.8e-08 Score=81.17 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=76.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhC--CCCcEEEEeCChhHHHHH--hcchhhhhh-hcCCCeeEEeCCCCCcC-CCCCc
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKNQLSMA--SSRQDLVSK-ACYKNIEWVEGDALDLP-FSDCF 106 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~--~~~~~~~~~-~~~~~i~~~~~d~~~~~-~~~~~ 106 (222)
.++.+|||.|||+|.++..+++.++ ...+++|+|+++.+++.| +..+..... .......+...|+.... ....+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3577999999999999999988753 134799999999999998 333221000 00022345555665532 23467
Q ss_pred eeEEEEcccccCc-cc----------------------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 107 FDAITMGYGLRNV-VD----------------------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 107 ~D~v~~~~~l~~~-~~----------------------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
||+|+++-.+... .. ...+++.+.+.|+|||++.++.+.
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 9999998887321 10 123678889999999999887665
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.72 E-value=8.1e-08 Score=71.88 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=78.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhC----CCCcEEEEeCChh--------------------------HHHHHhcchhhh
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVG----SQGKVIGLDFSKN--------------------------QLSMASSRQDLV 82 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~~~~~D~~~~--------------------------~~~~~~~~~~~~ 82 (222)
....+|||+|+..|..+..++..+. ++.+++++|..+. .++.+++++...
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 3456999999999999988877653 3678999996432 345566666544
Q ss_pred hhhcCCCeeEEeCCCCC-cC-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 83 SKACYKNIEWVEGDALD-LP-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 83 ~~~~~~~i~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+.. .++++++.+|+.+ ++ .+.++||+|+.-.-. .......++.+...|+|||.+++-+.
T Consensus 185 gl~-~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 185 DLL-DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp TCC-STTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCC-cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 320 1589999999876 33 334689999987632 23346789999999999999988554
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.71 E-value=8.5e-08 Score=71.10 Aligned_cols=87 Identities=22% Similarity=0.293 Sum_probs=70.4
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.+...+++.+...++..++|.+||.|..+..+++. +++++|+|.++.+++.+++ +.. +++.++++++.++
T Consensus 9 VLl~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l 78 (285)
T 1wg8_A 9 VLYQEALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHL 78 (285)
T ss_dssp TTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGH
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchH
Confidence 34566777778888899999999999999999986 5699999999999999998 642 4899999999876
Q ss_pred C-----CCCCceeEEEEccccc
Q 027517 101 P-----FSDCFFDAITMGYGLR 117 (222)
Q Consensus 101 ~-----~~~~~~D~v~~~~~l~ 117 (222)
+ ...+++|.|++...+.
T Consensus 79 ~~~L~~~g~~~vDgIL~DLGvS 100 (285)
T 1wg8_A 79 KRHLAALGVERVDGILADLGVS 100 (285)
T ss_dssp HHHHHHTTCSCEEEEEEECSCC
T ss_pred HHHHHHcCCCCcCEEEeCCccc
Confidence 3 1225799999865544
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-07 Score=63.02 Aligned_cols=90 Identities=14% Similarity=0.062 Sum_probs=63.0
Q ss_pred CCCCeEEEecCCCC-hhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEE
Q 027517 33 KTGDNVLDVCCGSG-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v 110 (222)
.++.+|||+|||+| ..+..|++. .+..|+++|+++.++ .+++.|+.+.... -+.||+|
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~--~g~~V~atDInp~Av------------------~~v~dDiF~P~~~~Y~~~DLI 93 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH--SKVDLVLTDIKPSHG------------------GIVRDDITSPRMEIYRGAALI 93 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH--SCCEEEEECSSCSST------------------TEECCCSSSCCHHHHTTEEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHh--CCCeEEEEECCcccc------------------ceEEccCCCCcccccCCcCEE
Confidence 45679999999999 588888875 367899999998654 2788888874321 1479999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
++... .++....+.++.+ +-|.-++|..+...
T Consensus 94 YsirP---P~El~~~i~~lA~--~v~adliI~pL~~E 125 (153)
T 2k4m_A 94 YSIRP---PAEIHSSLMRVAD--AVGARLIIKPLTGE 125 (153)
T ss_dssp EEESC---CTTTHHHHHHHHH--HHTCEEEEECBTTB
T ss_pred EEcCC---CHHHHHHHHHHHH--HcCCCEEEEcCCCC
Confidence 88554 3445555556655 33567777665543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-07 Score=71.44 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=64.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+|||+||++|+++..+++. +++|+++|+.+-. ...... ++|.+++.|......+.+++|+|+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l~-~~l~~~---------~~V~~~~~d~~~~~~~~~~~D~vv 275 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPMA-QSLMDT---------GQVTWLREDGFKFRPTRSNISWMV 275 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCCC-HHHHTT---------TCEEEECSCTTTCCCCSSCEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhcC-hhhccC---------CCeEEEeCccccccCCCCCcCEEE
Confidence 468999999999999999999876 5699999976421 111111 689999999988766667899999
Q ss_pred EcccccCcccHHHHHHHHhcccCCC
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPG 136 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~g 136 (222)
|-.+. ++..++.-+.+++..+
T Consensus 276 sDm~~----~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 276 CDMVE----KPAKVAALMAQWLVNG 296 (375)
T ss_dssp ECCSS----CHHHHHHHHHHHHHTT
T ss_pred EcCCC----ChHHhHHHHHHHHhcc
Confidence 96654 3445555555555444
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-08 Score=96.69 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=75.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCC----CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CCCCCce
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGS----QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFF 107 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 107 (222)
.+..+|||+|+|+|..+..+.+.++. ..+++..|+|+...+.+++++... ++.....|..+. ++....|
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~~~~~~~y 1312 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPAPGSLGKA 1312 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCCC-----C
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccccCCCCce
Confidence 35679999999999988877776542 127899999999988888886432 233322343332 2234579
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhc
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREF 187 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (222)
|+|++.+++|..++....+.++++.|||||++++.+..... .......|+.. ........
T Consensus 1313 dlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~--~~g~~~~~~~~------------------~~r~~~~~ 1372 (2512)
T 2vz8_A 1313 DLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGH--PLGEMVGFLTS------------------PEQGGRHL 1372 (2512)
T ss_dssp CEEEEECC--------------------CCEEEEEEC-------------------------------------------
T ss_pred eEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEeccccc--ccccccccccc------------------ccccCCcc
Confidence 99999999998888899999999999999999887654310 00000111100 00011234
Q ss_pred CCHHHHHHHHHHcCCeEEEEee
Q 027517 188 LTGKDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 188 ~~~~~~~~~l~~~Gf~~~~~~~ 209 (222)
.+.++|.++|+++||..+....
T Consensus 1373 ~~~~~w~~~l~~~gf~~~~~~~ 1394 (2512)
T 2vz8_A 1373 LSQDQWESLFAGASLHLVALKR 1394 (2512)
T ss_dssp ---CTTTTSSTTTTEEEEEEEE
T ss_pred cCHHHHHHHHHhCCCceeeecc
Confidence 6778899999999999877643
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6e-08 Score=75.03 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=78.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh-----hhcCCCeeEEeCCCCCcC----CC
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-----KACYKNIEWVEGDALDLP----FS 103 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~d~~~~~----~~ 103 (222)
.++++||-||.|.|..+..+++. + ..+++.+|+++..++.+++.+.... ....++++++..|....- ..
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~ 281 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE 281 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence 35679999999999999999986 3 3689999999999999998764211 111146899999986531 12
Q ss_pred CCceeEEEEcccccCc---c----c---HHHHHHHHhcccCCCcEEEEE
Q 027517 104 DCFFDAITMGYGLRNV---V----D---KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~---~----~---~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.++||+|+.-..-... + . ...+++.+++.|+|||.++..
T Consensus 282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4579999975432111 1 1 256789999999999999764
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.8e-07 Score=68.44 Aligned_cols=107 Identities=18% Similarity=0.148 Sum_probs=67.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+||||||++|.++..+++.. +...|.++|+...+....... .... .++.....+.....+...++|+|+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~~-~~~~----~~iv~~~~~~di~~l~~~~~DlVl 152 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIHM-QTLG----WNIVKFKDKSNVFTMPTEPSDTLL 152 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCC-CBTT----GGGEEEECSCCTTTSCCCCCSEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEeccccccccccc-cccC----CceEEeecCceeeecCCCCcCEEe
Confidence 4578899999999999999999753 233788999875431111100 0000 133333333222234456899999
Q ss_pred EcccccCccc-------HHHHHHHHhcccCCC-cEEEEEecC
Q 027517 112 MGYGLRNVVD-------KRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 112 ~~~~l~~~~~-------~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
+..+.+ ... ...+++-+..+|+|| |.+++-.+.
T Consensus 153 sD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 153 CDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp ECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred ecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 977666 321 134577778899999 999886655
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-06 Score=70.54 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=85.9
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCC------------CCcEEEEeCChhHHHHHhcchhhhhhhcC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS------------QGKVIGLDFSKNQLSMASSRQDLVSKACY 87 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~------------~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 87 (222)
+...+.+++.+...++.+|+|.+||+|.++....+.+.. ...++|+|+++.+...|+-++.-.+.
T Consensus 203 ~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~--- 279 (530)
T 3ufb_A 203 RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL--- 279 (530)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC---
Confidence 445567777887788889999999999998877654421 23699999999999998876544332
Q ss_pred CCeeEEeCCCCCcCC----CCCceeEEEEcccccCccc----------------HHHHHHHHhcccC-------CCcEEE
Q 027517 88 KNIEWVEGDALDLPF----SDCFFDAITMGYGLRNVVD----------------KRKALEESFRVLK-------PGSRIS 140 (222)
Q Consensus 88 ~~i~~~~~d~~~~~~----~~~~~D~v~~~~~l~~~~~----------------~~~~l~~~~~~l~-------~gG~l~ 140 (222)
....+..+|....+. ...+||+|+++-.+..-.+ ...+++.+.+.|| |||++.
T Consensus 280 ~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~a 359 (530)
T 3ufb_A 280 EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAA 359 (530)
T ss_dssp SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEE
T ss_pred ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEE
Confidence 244667777665432 2346999999988752211 1245667777775 799988
Q ss_pred EEecC
Q 027517 141 VLDFN 145 (222)
Q Consensus 141 i~~~~ 145 (222)
++.+.
T Consensus 360 vVlP~ 364 (530)
T 3ufb_A 360 VVVPN 364 (530)
T ss_dssp EEEEH
T ss_pred EEecc
Confidence 87654
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.45 E-value=4.9e-06 Score=63.98 Aligned_cols=161 Identities=9% Similarity=0.040 Sum_probs=102.3
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh------------------c
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA------------------C 86 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~------------------~ 86 (222)
.+...+...+...|+.+|||.......+.... ++..++-+|. |+.++..++.+...+.. .
T Consensus 88 ~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~ 165 (334)
T 1rjd_A 88 AILEFLVANEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLID 165 (334)
T ss_dssp HHHHHHHHCSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred HHHHHHHHCCCcEEEEeCCCCccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccC
Confidence 33334433566799999999999999888652 4557777777 88887777766443110 1
Q ss_pred CCCeeEEeCCCCCcC--------C-CCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCC---CCchh
Q 027517 87 YKNIEWVEGDALDLP--------F-SDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKS---TQPFT 152 (222)
Q Consensus 87 ~~~i~~~~~d~~~~~--------~-~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~---~~~~~ 152 (222)
..+..++..|+.+.. . ......++++-+++.+++. ...+++.+.+.. |+|.+++.+...+ .....
T Consensus 166 ~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg 244 (334)
T 1rjd_A 166 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFG 244 (334)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHH
T ss_pred CCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHH
Confidence 257889999998731 1 2245789999999999953 567788888776 7787777776655 22222
Q ss_pred hHHHHHHhh-cccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCe
Q 027517 153 TAIQEWMID-NVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFS 203 (222)
Q Consensus 153 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 203 (222)
..+...+.. .. .+. .....+.++++..+.|.++||+
T Consensus 245 ~~m~~~l~~~rg-~~l--------------~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 245 AIMQSNLKESRN-LEM--------------PTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHHHHHHHC-CCC--------------TTTTTTCSHHHHHGGGTTSSEE
T ss_pred HHHHHHhhcccC-Ccc--------------cccccCCCHHHHHHHHHHCCCC
Confidence 211111111 00 000 0112356889999999999997
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-06 Score=65.33 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=72.0
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+...+++.+...|+..++|..||.|..+..+++.+++.++++++|.++.+++.++ ++. . .+++++.++..++.
T Consensus 45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~--~----~Rv~lv~~nF~~l~ 117 (347)
T 3tka_A 45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID--D----PRFSIIHGPFSALG 117 (347)
T ss_dssp TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC--C----TTEEEEESCGGGHH
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc--C----CcEEEEeCCHHHHH
Confidence 4456677778888999999999999999999998878889999999999999995 441 1 58999999988752
Q ss_pred -----CC-CCceeEEEEcccccC
Q 027517 102 -----FS-DCFFDAITMGYGLRN 118 (222)
Q Consensus 102 -----~~-~~~~D~v~~~~~l~~ 118 (222)
.. .+++|.|++...+..
T Consensus 118 ~~L~~~g~~~~vDgILfDLGVSS 140 (347)
T 3tka_A 118 EYVAERDLIGKIDGILLDLGVSS 140 (347)
T ss_dssp HHHHHTTCTTCEEEEEEECSCCH
T ss_pred HHHHhcCCCCcccEEEECCccCH
Confidence 11 136999998766553
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.1e-06 Score=60.65 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=75.5
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCCcCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSD 104 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~ 104 (222)
+.+.....++.+|+|+||++|.++..++...+ ..+|+++|+-..-.+..+- .. .-+++.+.+..+ |+...+ .
T Consensus 70 i~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~P~~-~~---s~gwn~v~fk~gvDv~~~~--~ 142 (267)
T 3p8z_A 70 FVERNMVIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEEPVP-MS---TYGWNIVKLMSGKDVFYLP--P 142 (267)
T ss_dssp HHHTTSSCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCCCC-CC---CTTTTSEEEECSCCGGGCC--C
T ss_pred HHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccCcch-hh---hcCcCceEEEeccceeecC--C
Confidence 44444667888999999999999998887742 2379999986654321111 11 122367899988 876554 3
Q ss_pred CceeEEEEcccccCcc---cH---HHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 105 CFFDAITMGYGLRNVV---DK---RKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~---~~---~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
.++|.|+|-..=..-. +. .++|+-+.++|++ |.+++-.+.+..
T Consensus 143 ~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 143 EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 5699999966542221 11 2367777889998 777775555444
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-07 Score=66.39 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=66.7
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCCcCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSD 104 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~ 104 (222)
+.+..-..|+.+|+|+||++|.++...++..+ -..+.|.++..+. . ... ..... ....-+.+.++ |+.+++ .
T Consensus 65 IdeK~likpg~~VVDLGaAPGGWSQvAa~~~~-vg~V~G~vig~D~-~-~~P-~~~~~-~Gv~~i~~~~G~Df~~~~--~ 137 (269)
T 2px2_A 65 LVERRFVQPIGKVVDLGCGRGGWSYYAATMKN-VQEVRGYTKGGPG-H-EEP-MLMQS-YGWNIVTMKSGVDVFYKP--S 137 (269)
T ss_dssp HHHTTSCCCCEEEEEETCTTSHHHHHHTTSTT-EEEEEEECCCSTT-S-CCC-CCCCS-TTGGGEEEECSCCGGGSC--C
T ss_pred HHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcC-CCCceeEEEcccc-c-cCC-CcccC-CCceEEEeeccCCccCCC--C
Confidence 33333567899999999999999999987621 1234455544331 0 000 00000 00011245546 888743 4
Q ss_pred CceeEEEEcccccCcc----cHH---HHHHHHhcccCCCc-EEEEEecC
Q 027517 105 CFFDAITMGYGLRNVV----DKR---KALEESFRVLKPGS-RISVLDFN 145 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~----~~~---~~l~~~~~~l~~gG-~l~i~~~~ 145 (222)
.++|+|+|-.+-. -. |.. .+++-+.++|+||| .+++=.+.
T Consensus 138 ~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 138 EISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 5799999976554 22 222 25667778999999 88776666
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.7e-06 Score=60.92 Aligned_cols=113 Identities=17% Similarity=0.153 Sum_probs=73.5
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCCcCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSD 104 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~ 104 (222)
+.+...+.++.+||||||++|.++..++...+ ..+|+++|+-..-.+..+- ....+. .-+.+... |+..++.
T Consensus 86 i~~~~~l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P~~-~~ql~w---~lV~~~~~~Dv~~l~~-- 158 (321)
T 3lkz_A 86 LVERRFLEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEPQL-VQSYGW---NIVTMKSGVDVFYRPS-- 158 (321)
T ss_dssp HHHTTSCCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCCCC-CCBTTG---GGEEEECSCCTTSSCC--
T ss_pred HHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCcch-hhhcCC---cceEEEeccCHhhCCC--
Confidence 44445567888999999999999998887632 2379999986652211000 011122 24677776 7766543
Q ss_pred CceeEEEEcccccCcccH-------HHHHHHHhcccCCC-cEEEEEecCC
Q 027517 105 CFFDAITMGYGLRNVVDK-------RKALEESFRVLKPG-SRISVLDFNK 146 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~-------~~~l~~~~~~l~~g-G~l~i~~~~~ 146 (222)
.++|+|+|-.. ..-+++ .++|+-+.++|++| |.+++-.+.+
T Consensus 159 ~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 159 ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 56999999766 433332 23566668899998 8887755554
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0001 Score=56.06 Aligned_cols=108 Identities=16% Similarity=0.001 Sum_probs=77.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---------CCCC
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---------FSDC 105 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~~ 105 (222)
...|++||||.-.....+.. +.+..++-+| .|+.++..++.+...+.....+..++..|+.+ . +...
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~--~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDW--PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPS 178 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCC--CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTT
T ss_pred CCeEEEeCCCCCchhhhccC--CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCC
Confidence 35799999998777655541 2346899999 59999988888754322222578889999876 2 2223
Q ss_pred ceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 106 FFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
..-++++-++++++++ ...+++.+...+.||+.+++.....
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 4567888899999864 5678899998888999887765543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.4e-05 Score=57.19 Aligned_cols=101 Identities=13% Similarity=-0.009 Sum_probs=67.4
Q ss_pred hCCCCCCeEEEecC------CCChhHHHHHHHhCCC-CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 30 SGAKTGDNVLDVCC------GSGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 30 ~~~~~~~~vLdiG~------G~G~~~~~l~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
+..+-+.+|||+|| .+|.. .++.+.+. +.++++|+.+-.. . .. .++++|......
T Consensus 105 ~~vp~gmrVLDLGA~s~kg~APGS~---VLr~~~p~g~~VVavDL~~~~s------d--------a~-~~IqGD~~~~~~ 166 (344)
T 3r24_A 105 LAVPYNMRVIHFGAGSDKGVAPGTA---VLRQWLPTGTLLVDSDLNDFVS------D--------AD-STLIGDCATVHT 166 (344)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHHH---HHHHHSCTTCEEEEEESSCCBC------S--------SS-EEEESCGGGEEE
T ss_pred EeecCCCEEEeCCCCCCCCCCCcHH---HHHHhCCCCcEEEEeeCccccc------C--------CC-eEEEcccccccc
Confidence 45577899999997 56663 33333454 5899999977321 0 12 458999766443
Q ss_pred CCCceeEEEEcccccCc-----cc------HHHHHHHHhcccCCCcEEEEEecCCCCC
Q 027517 103 SDCFFDAITMGYGLRNV-----VD------KRKALEESFRVLKPGSRISVLDFNKSTQ 149 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~-----~~------~~~~l~~~~~~l~~gG~l~i~~~~~~~~ 149 (222)
.++||+|++-..-... +. .+.++.-+.+.|+|||.+++=.+.....
T Consensus 167 -~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~ 223 (344)
T 3r24_A 167 -ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN 223 (344)
T ss_dssp -SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC
T ss_pred -CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH
Confidence 3779999985442211 11 3667788888999999998876665543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.7e-05 Score=60.08 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=45.0
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 82 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (222)
..+++... .++..|||++||+|..+..+++. +.+++|+|+++.+++.+++++...
T Consensus 226 ~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 226 ERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 34444444 57889999999999999987765 568999999999999999998654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=6.1e-05 Score=56.77 Aligned_cols=134 Identities=14% Similarity=0.078 Sum_probs=77.9
Q ss_pred CCCCeEEEecCCCChhHHHHHH---HhCCCCc--EEEEeCCh--------hHHHH-HhcchhhhhhhcCCC--eeEEeCC
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSE---QVGSQGK--VIGLDFSK--------NQLSM-ASSRQDLVSKACYKN--IEWVEGD 96 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~---~~~~~~~--~~~~D~~~--------~~~~~-~~~~~~~~~~~~~~~--i~~~~~d 96 (222)
.+.-+|||+|-|+|.......+ ..++..+ ++.+|..+ +.... ........+.....+ +.+..+|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 3446899999999987643332 2245544 55666422 11111 111111101000123 4567788
Q ss_pred CCC-cC-CCCCceeEEEEccc-ccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccC
Q 027517 97 ALD-LP-FSDCFFDAITMGYG-LRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 171 (222)
Q Consensus 97 ~~~-~~-~~~~~~D~v~~~~~-l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (222)
+.+ ++ ....++|+++.-.. -..-|+. ..+++.+++.++|||++.-
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT------------------------------ 224 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS------------------------------ 224 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE------------------------------
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE------------------------------
Confidence 765 33 33447999998542 1111332 7899999999999999852
Q ss_pred ChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 172 GLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
+-....+++.|+++||++.+...+.
T Consensus 225 ---------------Ytaag~VRR~L~~aGF~V~k~~G~g 249 (308)
T 3vyw_A 225 ---------------YSSSLSVRKSLLTLGFKVGSSREIG 249 (308)
T ss_dssp ---------------SCCCHHHHHHHHHTTCEEEEEECC-
T ss_pred ---------------EeCcHHHHHHHHHCCCEEEecCCCC
Confidence 1233577899999999988766544
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.002 Score=49.39 Aligned_cols=170 Identities=9% Similarity=0.058 Sum_probs=103.7
Q ss_pred HHHHHhhCCC-CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh------------------
Q 027517 24 RMAVSWSGAK-TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK------------------ 84 (222)
Q Consensus 24 ~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~------------------ 84 (222)
..+...+... +...|+-+|||.=.....+.....++..++-+|. |+.++.-++.+...+.
T Consensus 79 ~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~ 157 (334)
T 3iei_A 79 QLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDG 157 (334)
T ss_dssp HHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCT
T ss_pred HHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhccccccccccccc
Confidence 3344444332 5679999999998887777653113557888886 6666655544432110
Q ss_pred --hcCCCeeEEeCCCCCc----------CCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCc
Q 027517 85 --ACYKNIEWVEGDALDL----------PFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQP 150 (222)
Q Consensus 85 --~~~~~i~~~~~d~~~~----------~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~ 150 (222)
-...+...+..|+.+. .+.....-++++-+++.+++ ....+++.+.+... +|.+++.+...+..+
T Consensus 158 ~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~ 236 (334)
T 3iei_A 158 HILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDR 236 (334)
T ss_dssp TEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSH
T ss_pred ccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCH
Confidence 0125788999998762 13334567888888888885 35677888877664 556666676655544
Q ss_pred hhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 151 FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
+...+.......... . .+...+.++++..+.+.++||+.++..+.
T Consensus 237 fg~~M~~~l~~~g~p-l--------------~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 237 FGQIMIENLRRRQCD-L--------------AGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHHHHHHTTTCC-C--------------TTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHHHHHHhCCC-C--------------cccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 433333322211110 0 11223568889999999999998776544
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=56.60 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=56.6
Q ss_pred hHHHHHHHHhhCCC------CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE
Q 027517 20 RIWKRMAVSWSGAK------TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 93 (222)
Q Consensus 20 ~~~~~~~~~~~~~~------~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (222)
....+.+++.+... ++..|||||.|.|.++..|++.. ...+++++|+++..+...++.. . .++++++
T Consensus 38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~-~~~~vvavE~D~~l~~~L~~~~-~-----~~~l~ii 110 (353)
T 1i4w_A 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKF-E-----GSPLQIL 110 (353)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHT-T-----TSSCEEE
T ss_pred HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhC-CCCEEEEEecCHHHHHHHHHhc-c-----CCCEEEE
Confidence 34445556655544 35899999999999999999864 2348999999999988887765 1 1589999
Q ss_pred eCCCCCc
Q 027517 94 EGDALDL 100 (222)
Q Consensus 94 ~~d~~~~ 100 (222)
.+|+.++
T Consensus 111 ~~D~l~~ 117 (353)
T 1i4w_A 111 KRDPYDW 117 (353)
T ss_dssp CSCTTCH
T ss_pred ECCccch
Confidence 9999764
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00021 Score=53.10 Aligned_cols=108 Identities=8% Similarity=-0.075 Sum_probs=82.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c---CCCCCceeE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L---PFSDCFFDA 109 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~---~~~~~~~D~ 109 (222)
.+..+||+=+|+|.++..++.. +.+++.+|.++...+..++++... .++.++..|... + ..+..+||+
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~~-----~~~~V~~~D~~~~L~~l~~~~~~fdL 162 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHFN-----KKVYVNHTDGVSKLNALLPPPEKRGL 162 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCTT-----SCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred cCCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCcC-----CcEEEEeCcHHHHHHHhcCCCCCccE
Confidence 3557999999999999988753 468999999999999999998642 589999999754 2 123356999
Q ss_pred EEEcccccCcccHHHHHHHHhc--ccCCCcEEEEEecCCCCC
Q 027517 110 ITMGYGLRNVVDKRKALEESFR--VLKPGSRISVLDFNKSTQ 149 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~--~l~~gG~l~i~~~~~~~~ 149 (222)
|++--.+..-.+..++++.+.+ .+.|+|++++.-+.....
T Consensus 163 VfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~ 204 (283)
T 2oo3_A 163 IFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKA 204 (283)
T ss_dssp EEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHH
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchH
Confidence 9998877754566666666665 567899999977665443
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00038 Score=51.63 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=43.5
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
+.+++... .++..|||..||+|..+....+. +.+++|+|+++..++.+++++..
T Consensus 203 ~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 203 ERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp HHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHh
Confidence 33444433 67889999999999999887765 56999999999999999988753
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0047 Score=48.28 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=57.1
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC--------CCCc
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF--------SDCF 106 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~ 106 (222)
.+++|+-||.|.++.-+... +. .+.++|+++.+.+..+.+. ++..++++|+.++.. ....
T Consensus 3 ~~vidLFsG~GGlslG~~~a---G~~~v~avE~d~~a~~t~~~N~--------~~~~~~~~DI~~~~~~~~~~~~~~~~~ 71 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA---GFDVKMAVEIDQHAINTHAINF--------PRSLHVQEDVSLLNAEIIKGFFKNDMP 71 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH---TCEEEEEECSCHHHHHHHHHHC--------TTSEEECCCGGGCCHHHHHHHHCSCCC
T ss_pred CeEEEEccCcCHHHHHHHHC---CCcEEEEEeCCHHHHHHHHHhC--------CCCceEecChhhcCHHHHHhhcccCCC
Confidence 48999999999999998876 34 4679999999988887765 467788889887531 2357
Q ss_pred eeEEEEcccccCc
Q 027517 107 FDAITMGYGLRNV 119 (222)
Q Consensus 107 ~D~v~~~~~l~~~ 119 (222)
+|+|+.......+
T Consensus 72 ~D~i~ggpPCQ~f 84 (376)
T 3g7u_A 72 IDGIIGGPPCQGF 84 (376)
T ss_dssp CCEEEECCCCCTT
T ss_pred eeEEEecCCCCCc
Confidence 9999987775555
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0024 Score=50.35 Aligned_cols=105 Identities=19% Similarity=0.173 Sum_probs=69.7
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
...+..++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.- ...+..+-.+.
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~lG----------a~~i~~~~~~~~~~~~ 246 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLL--GAACVIVGDQNPERLKLLSDAG----------FETIDLRNSAPLRDQI 246 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHTTT----------CEEEETTSSSCHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcC----------CcEEcCCCcchHHHHH
Confidence 445678899999999987 88888888876 45 8999999999888877541 12332211111
Q ss_pred C--CCCCceeEEEEcccccCc--------ccHHHHHHHHhcccCCCcEEEEEec
Q 027517 101 P--FSDCFFDAITMGYGLRNV--------VDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 ~--~~~~~~D~v~~~~~l~~~--------~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
. .....+|+|+-.-.-... .+....++...+.|+++|++++...
T Consensus 247 ~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 247 DQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp HHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred HHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence 0 112359999865443210 0123467888899999999877543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0059 Score=47.59 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=68.2
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
+.....++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.- .-.++..+-.++
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~~~ 252 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQLG---------ATHVINSKTQDPVAAIK 252 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHHHT---------CSEEEETTTSCHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHcC---------CCEEecCCccCHHHHHH
Confidence 344667889999999986 77888888876 45 6999999999888886542 112222211111
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
....+.+|+|+-...- ...++...+.|+++|++++....
T Consensus 253 ~~~~gg~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 253 EITDGGVNFALESTGS------PEILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp HHTTSCEEEEEECSCC------HHHHHHHHHTEEEEEEEEECCCC
T ss_pred HhcCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEeCCC
Confidence 1112369999864431 35678888999999999876543
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.015 Score=42.82 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=70.5
Q ss_pred CCeEEEecCCCChhHHHHHHH---h---CCCCcEEEEeCChhHH---------------------------HHHh---cc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQ---V---GSQGKVIGLDFSKNQL---------------------------SMAS---SR 78 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~---~---~~~~~~~~~D~~~~~~---------------------------~~~~---~~ 78 (222)
...|+|+|+-.|..+..++.. + ++..+++++|.-+.+- +... ++
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 348999999999988876542 2 2456899999321111 1100 00
Q ss_pred hhhhhhhcCCCeeEEeCCCCCc-C-----CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 79 QDLVSKACYKNIEWVEGDALDL-P-----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 79 ~~~~~~~~~~~i~~~~~d~~~~-~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
....+. ...++.++.+++.+. + .+..++|+|+.-.- ........++.+...|+|||.+++-++.
T Consensus 150 ~~~~g~-~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D--~Y~~t~~~le~~~p~l~~GGvIv~DD~~ 219 (257)
T 3tos_A 150 SDFFGH-VTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD--LYEPTKAVLEAIRPYLTKGSIVAFDELD 219 (257)
T ss_dssp TSTTTT-SCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC--CHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred hhhcCC-CCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc--ccchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 011111 016899999998763 2 23457999998763 2244567899999999999999987764
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.003 Score=50.01 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=48.6
Q ss_pred CCCCCeEEEecCCCChhHHHHH-HHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcC-CCeeEEeCCCC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLS-EQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACY-KNIEWVEGDAL 98 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~ 98 (222)
..++..|+|+||+.|..+..++ +..++..+|+++|++|...+..+++......... +++.+++.-+.
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 4678899999999999999888 4433336999999999999999888764100111 36666654443
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0045 Score=47.81 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=67.5
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCc
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 106 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (222)
...+..++.+||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++.- .-.++ .+...+ . +.
T Consensus 170 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~lG---------a~~v~-~~~~~~--~-~~ 234 (348)
T 3two_A 170 KFSKVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALSMG---------VKHFY-TDPKQC--K-EE 234 (348)
T ss_dssp HHTTCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHHTT---------CSEEE-SSGGGC--C-SC
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHhcC---------CCeec-CCHHHH--h-cC
Confidence 344678899999999976 77888888875 569999999999888887642 11222 333222 2 26
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+|+|+-...-. ..++...+.|+++|+++.....
T Consensus 235 ~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~~ 267 (348)
T 3two_A 235 LDFIISTIPTH------YDLKDYLKLLTYNGDLALVGLP 267 (348)
T ss_dssp EEEEEECCCSC------CCHHHHHTTEEEEEEEEECCCC
T ss_pred CCEEEECCCcH------HHHHHHHHHHhcCCEEEEECCC
Confidence 99998644322 1356778899999999886543
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.012 Score=49.62 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=65.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC------C-----CCcEEEEeC---ChhHHHHHhcchhh-----------hh-----
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG------S-----QGKVIGLDF---SKNQLSMASSRQDL-----------VS----- 83 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~------~-----~~~~~~~D~---~~~~~~~~~~~~~~-----------~~----- 83 (222)
+.-+|+|+|-|+|.......+.+. | ..+++.+|. +++.+..+...... ..
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 345999999999998877766531 1 135899998 77777644432110 00
Q ss_pred ------hhcCCCeeEEeCCCCC-cC-CC---CCceeEEEEcccccCc-cc--HHHHHHHHhcccCCCcEEE
Q 027517 84 ------KACYKNIEWVEGDALD-LP-FS---DCFFDAITMGYGLRNV-VD--KRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 84 ------~~~~~~i~~~~~d~~~-~~-~~---~~~~D~v~~~~~l~~~-~~--~~~~l~~~~~~l~~gG~l~ 140 (222)
......+++..+|+.+ ++ .. ...+|+++.-..-... |+ ...+++.+.+.++|||.+.
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 216 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA 216 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 0011234566677654 22 11 3579999984421111 22 2678999999999999885
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.069 Score=45.27 Aligned_cols=159 Identities=14% Similarity=0.171 Sum_probs=93.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC-------CCCcEEEEeCChhHHHHHhcchhhhhh---------------------h
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG-------SQGKVIGLDFSKNQLSMASSRQDLVSK---------------------A 85 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~---------------------~ 85 (222)
+...|+-||||.=....++....+ .+..++-+|. |+.++.-++.+...+. .
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 456899999999888888765411 1345666665 5555554444432110 0
Q ss_pred cCCCeeEEeCCCCCcC----------C-CCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCC---
Q 027517 86 CYKNIEWVEGDALDLP----------F-SDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQ--- 149 (222)
Q Consensus 86 ~~~~i~~~~~d~~~~~----------~-~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~--- 149 (222)
...+..++..|+.+.. + .....-++++-.++.+++ ...++++.+.+. ++|.+++.+...+..
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~~~d 263 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPKGPFE 263 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTTCTTS
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCCCCCC
Confidence 0036788889998731 2 334456788888888885 356778877754 677777766554432
Q ss_pred chhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 150 PFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
.+...+...+.... ..+ .....+.++++..+.|.++||+.+...++
T Consensus 264 ~f~~~m~~~~~~~g-----~~l----------~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 264 PFSKQMLAHFKRND-----SPL----------QSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp HHHHHHHHHHHHTT-----CCC----------CGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred hHHHHHHHHHHHcC-----CCC----------CccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 22222211111000 000 11123568899999999999987766543
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0072 Score=47.59 Aligned_cols=104 Identities=15% Similarity=0.170 Sum_probs=69.8
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-----cC
Q 027517 29 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-----LP 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-----~~ 101 (222)
..+..++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.- ...+...-.+ +.
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~--Ga~~Vi~~~~~~~~~~~a~~lG----------a~~i~~~~~~~~~~~v~ 247 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLL--GAAVVIVGDLNPARLAHAKAQG----------FEIADLSLDTPLHEQIA 247 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTT----------CEEEETTSSSCHHHHHH
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHcC----------CcEEccCCcchHHHHHH
Confidence 45677899999999876 78888888875 45 6999999999888886541 1222221111 10
Q ss_pred --CCCCceeEEEEccccc---------CcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 --FSDCFFDAITMGYGLR---------NVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 --~~~~~~D~v~~~~~l~---------~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.....+|+|+-+-.-. +.+++...++...+.|+++|++++...
T Consensus 248 ~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 248 ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred HHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence 1223699999654322 223445578888999999999977543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0086 Score=50.70 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=65.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC------CC-----CcEEEEeC---ChhHHHHHhcchh-----------hhh-----
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG------SQ-----GKVIGLDF---SKNQLSMASSRQD-----------LVS----- 83 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~------~~-----~~~~~~D~---~~~~~~~~~~~~~-----------~~~----- 83 (222)
+..+|+|+|.|+|.....+.+.+. |. .+++.+|. +.+.+..+..... ..+
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 446999999999999887766531 11 36899998 4455544332211 000
Q ss_pred -----h-hcCCCeeEEeCCCCC-cC-CC---CCceeEEEEcccccC-ccc--HHHHHHHHhcccCCCcEEE
Q 027517 84 -----K-ACYKNIEWVEGDALD-LP-FS---DCFFDAITMGYGLRN-VVD--KRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 84 -----~-~~~~~i~~~~~d~~~-~~-~~---~~~~D~v~~~~~l~~-~~~--~~~~l~~~~~~l~~gG~l~ 140 (222)
. ...-.+++..+|+.+ ++ .. ...+|+++.-..--. -++ ...++..+.++++|||.+.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 208 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFS 208 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 0 011245677788765 22 11 367999998442111 122 2778899999999999875
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.01 Score=41.70 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=62.1
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C
Q 027517 29 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~ 101 (222)
..+..++++||..|+ |.|..+..+++.. +.+|+++|.+++..+.+++. + .. ..+..+-.+. .
T Consensus 33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~~----g----~~-~~~d~~~~~~~~~~~~ 101 (198)
T 1pqw_A 33 VGRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSRL----G----VE-YVGDSRSVDFADEILE 101 (198)
T ss_dssp TSCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHTT----C----CS-EEEETTCSTHHHHHHH
T ss_pred HhCCCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C----CC-EEeeCCcHHHHHHHHH
Confidence 345678899999995 3466666666664 56899999998877766542 1 11 1121111111 0
Q ss_pred -CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
...+.+|+++.+.. ...++...+.|+++|+++....
T Consensus 102 ~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 102 LTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp HTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred HhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence 11235999997543 2457788899999999887543
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.023 Score=43.52 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=53.9
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCc-E-EEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---CCCceeE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGK-V-IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---SDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~-~-~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~ 109 (222)
..+++|+-||.|.++.-+.+. +-..+ + .++|+++.+.+.-+.+.. .. ++..|+.++.. +...+|+
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~--------~~-~~~~DI~~~~~~~i~~~~~Di 79 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFK--------EE-VQVKNLDSISIKQIESLNCNT 79 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHC--------CC-CBCCCTTTCCHHHHHHTCCCE
T ss_pred CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCC--------CC-cccCChhhcCHHHhccCCCCE
Confidence 458999999999999988765 22134 5 699999999888777752 22 56678877532 2225899
Q ss_pred EEEcccccCc
Q 027517 110 ITMGYGLRNV 119 (222)
Q Consensus 110 v~~~~~l~~~ 119 (222)
++.......+
T Consensus 80 l~ggpPCQ~f 89 (327)
T 3qv2_A 80 WFMSPPCQPY 89 (327)
T ss_dssp EEECCCCTTC
T ss_pred EEecCCccCc
Confidence 9987776655
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0089 Score=45.96 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=68.5
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----C
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----F 102 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~ 102 (222)
......++.+||-.|+|. |..+..+++.. +.+|+++|.+++.++.+++.- .-.++...-.+.. .
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~lG---------a~~~i~~~~~~~~~~~~~ 228 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARRLG---------AEVAVNARDTDPAAWLQK 228 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTT---------CSEEEETTTSCHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHcC---------CCEEEeCCCcCHHHHHHH
Confidence 445677899999999986 88888888885 569999999999888877642 1122222111110 0
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
..+.+|+|+-... -...++...+.|+++|+++.....
T Consensus 229 ~~g~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~~ 265 (340)
T 3s2e_A 229 EIGGAHGVLVTAV------SPKAFSQAIGMVRRGGTIALNGLP 265 (340)
T ss_dssp HHSSEEEEEESSC------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred hCCCCCEEEEeCC------CHHHHHHHHHHhccCCEEEEeCCC
Confidence 1125888876432 145678888999999999876443
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0027 Score=49.00 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=54.6
Q ss_pred CeEEEecCCCChhHHHHHHHhCCC-CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---CCCceeEEE
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---SDCFFDAIT 111 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v~ 111 (222)
.+|+|+.||.|.++..+... +-. ..+.++|+++.+++..+.+. ++..++.+|+.++.. +...+|+++
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~--------~~~~~~~~Di~~~~~~~~~~~~~D~l~ 73 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhc--------cccccccCCHHHccHhHcCcCCcCEEE
Confidence 48999999999999998876 211 25899999999999988876 355677888887631 111589999
Q ss_pred EcccccCc
Q 027517 112 MGYGLRNV 119 (222)
Q Consensus 112 ~~~~l~~~ 119 (222)
.......+
T Consensus 74 ~gpPCq~f 81 (343)
T 1g55_A 74 MSPPCQPF 81 (343)
T ss_dssp ECCC----
T ss_pred EcCCCcch
Confidence 87765444
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.011 Score=45.65 Aligned_cols=102 Identities=17% Similarity=0.243 Sum_probs=68.1
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
......++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.- .-.++..+-.++
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~v~ 228 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHL--GAGRIFAVGSRKHCCDIALEYG---------ATDIINYKNGDIVEQIL 228 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTT--TCSSEEEECCCHHHHHHHHHHT---------CCEEECGGGSCHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhC---------CceEEcCCCcCHHHHHH
Confidence 556678899999999876 77778888774 55 7999999998888877642 112222111111
Q ss_pred C-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 101 P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 101 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
. .....+|+|+-...- ...++...+.|+++|+++......
T Consensus 229 ~~t~g~g~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~G~~~ 269 (352)
T 3fpc_A 229 KATDGKGVDKVVIAGGD------VHTFAQAVKMIKPGSDIGNVNYLG 269 (352)
T ss_dssp HHTTTCCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCCCC
T ss_pred HHcCCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEecccC
Confidence 0 123469999864332 235677888999999998765443
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.017 Score=44.71 Aligned_cols=100 Identities=16% Similarity=0.261 Sum_probs=66.8
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC---CCC---
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD---ALD--- 99 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d---~~~--- 99 (222)
......++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.-. . .++..+ ..+
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~lGa--------~-~vi~~~~~~~~~~~~ 233 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKEIGA--------D-LVLQISKESPQEIAR 233 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTTC--------S-EEEECSSCCHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhCC--------C-EEEcCcccccchHHH
Confidence 445678899999999876 77888888875 55 89999999988888775421 1 222221 011
Q ss_pred -c-CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 100 -L-PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 -~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+ ....+.+|+|+-.-.- ...++...+.|+++|+++....
T Consensus 234 ~i~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 234 KVEGQLGCKPEVTIECTGA------EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp HHHHHHTSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECSC
T ss_pred HHHHHhCCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEec
Confidence 1 0001458999864431 3456778889999999987654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.017 Score=44.34 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=65.4
Q ss_pred HhhCCCCCCeEEEecCC--CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----
Q 027517 28 SWSGAKTGDNVLDVCCG--SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 101 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (222)
+.....++.+||-.|+| .|..+..+++.. +.+|+++|.+++.++.+++.- .-..+...-.++.
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~lg---------a~~~~~~~~~~~~~~~~ 206 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLRLG---------AAYVIDTSTAPLYETVM 206 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHHT---------CSEEEETTTSCHHHHHH
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhCC---------CcEEEeCCcccHHHHHH
Confidence 45567889999999987 477788888875 569999999998888877642 1122222111110
Q ss_pred --CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.....+|+|+-+..-. ......+.|+++|+++.....
T Consensus 207 ~~~~~~g~Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~G~~ 245 (340)
T 3gms_A 207 ELTNGIGADAAIDSIGGP-------DGNELAFSLRPNGHFLTIGLL 245 (340)
T ss_dssp HHTTTSCEEEEEESSCHH-------HHHHHHHTEEEEEEEEECCCT
T ss_pred HHhCCCCCcEEEECCCCh-------hHHHHHHHhcCCCEEEEEeec
Confidence 1234699998754321 123344789999999886544
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.029 Score=43.70 Aligned_cols=101 Identities=22% Similarity=0.216 Sum_probs=68.7
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
......++.+||-.|+|. |..+..+++.. +. +|+++|.+++..+.+++.- .-.++...-.++
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~i~ 244 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLA--GATTVILSTRQATKRRLAEEVG---------ATATVDPSAGDVVEAIA 244 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHT---------CSEEECTTSSCHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHcC---------CCEEECCCCcCHHHHHH
Confidence 556778899999999876 77788888875 55 8999999999888877642 112222111111
Q ss_pred C---CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 101 P---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 101 ~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
. ...+.+|+|+-+..- ...++...+.|++||++++....
T Consensus 245 ~~~~~~~gg~Dvvid~~G~------~~~~~~~~~~l~~~G~vv~~G~~ 286 (370)
T 4ej6_A 245 GPVGLVPGGVDVVIECAGV------AETVKQSTRLAKAGGTVVILGVL 286 (370)
T ss_dssp STTSSSTTCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECSCC
T ss_pred hhhhccCCCCCEEEECCCC------HHHHHHHHHHhccCCEEEEEecc
Confidence 1 222369999864321 35677888899999999876544
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0091 Score=45.39 Aligned_cols=93 Identities=14% Similarity=0.028 Sum_probs=62.4
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCc
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 106 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (222)
...+..++.+||-+|+|. |..+..+++.. +.+|++++ +++.++.+++.- .-.++ .|...+ .+.
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~lG---------a~~v~-~d~~~v---~~g 199 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNA--GYVVDLVS-ASLSQALAAKRG---------VRHLY-REPSQV---TQK 199 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEEC-SSCCHHHHHHHT---------EEEEE-SSGGGC---CSC
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEE-ChhhHHHHHHcC---------CCEEE-cCHHHh---CCC
Confidence 455678899999999965 78888888886 55999999 888888876641 11222 242222 457
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|+|+-+-.-. .+....+.|+++|+++...
T Consensus 200 ~Dvv~d~~g~~-------~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 200 YFAIFDAVNSQ-------NAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp EEEEECC--------------TTGGGEEEEEEEEEEC
T ss_pred ccEEEECCCch-------hHHHHHHHhcCCCEEEEEe
Confidence 99998543211 1245778999999998763
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0099 Score=47.02 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=36.5
Q ss_pred CCeEEEecCCCChhHHHHHHHhCC----CCcEEEEeCChhHHHHHhcchhh
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGS----QGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
...|+|+|+|+|.++..+++.+.. ..++..+|+|+...+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 469999999999998887765421 23799999999888777776643
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.049 Score=42.17 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=69.6
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC---CCc--
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA---LDL-- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---~~~-- 100 (222)
...+..++.+||-+|+|. |..+..+++.. +.+ |+++|.+++.++.+++. . ..+.....+. .++
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l-~-------~~~~~~~~~~~~~~~~~~ 242 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAA--GACPLVITDIDEGRLKFAKEI-C-------PEVVTHKVERLSAEESAK 242 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEEESCHHHHHHHHHH-C-------TTCEEEECCSCCHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-c-------hhcccccccccchHHHHH
Confidence 456778899999999876 77888888875 455 99999999998888865 2 1222222111 111
Q ss_pred ----CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 101 ----PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 101 ----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
......+|+|+-...- ...+....+.|+++|++++.....
T Consensus 243 ~v~~~t~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G~~~ 286 (363)
T 3m6i_A 243 KIVESFGGIEPAVALECTGV------ESSIAAAIWAVKFGGKVFVIGVGK 286 (363)
T ss_dssp HHHHHTSSCCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECCCCC
T ss_pred HHHHHhCCCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEccCC
Confidence 0123468999864331 346778888999999998865443
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.042 Score=42.42 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=66.4
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC-CCc----C
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDL----P 101 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~----~ 101 (222)
...+..++.+||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++.-. . .++..+- .+. .
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~lGa--------~-~~~~~~~~~~~~~~i~ 230 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNCGA--------D-VTLVVDPAKEEESSII 230 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTC--------S-EEEECCTTTSCHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCC--------C-EEEcCcccccHHHHHH
Confidence 445678899999999875 77778888875 5579999999998888765421 1 2222110 111 0
Q ss_pred --CC---CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 --FS---DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 --~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.. .+.+|+|+-+..- ...++...+.|+++|+++....
T Consensus 231 ~~~~~~~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 231 ERIRSAIGDLPNVTIDCSGN------EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp HHHHHHSSSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECSC
T ss_pred HHhccccCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence 11 2458999864431 3456778889999999987654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.021 Score=44.30 Aligned_cols=101 Identities=21% Similarity=0.163 Sum_probs=67.7
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 101 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----- 101 (222)
+.....++.+||-+|+|. |..+..+++.. +.+++++|.+++.++.+++.- .-.++..+..++.
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~v~~ 251 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFALG---------ADHGINRLEEDWVERVYA 251 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---------CSEEEETTTSCHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHHcC---------CCEEEcCCcccHHHHHHH
Confidence 445677899999999886 77788888875 569999999998888876542 1122222212210
Q ss_pred -CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.....+|+|+-+..- ..+....+.|+++|++++.....
T Consensus 252 ~~~g~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~~~ 290 (363)
T 3uog_A 252 LTGDRGADHILEIAGG-------AGLGQSLKAVAPDGRISVIGVLE 290 (363)
T ss_dssp HHTTCCEEEEEEETTS-------SCHHHHHHHEEEEEEEEEECCCS
T ss_pred HhCCCCceEEEECCCh-------HHHHHHHHHhhcCCEEEEEecCC
Confidence 123469999965541 13556777899999998875443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.026 Score=43.98 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=64.2
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-CCCCCc
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PFSDCF 106 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~ 106 (222)
....++.+||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++.- .-.++...-.+ . ... +.
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~~~-~g 257 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKALG---------ADEVVNSRNADEMAAHL-KS 257 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHT---------CSEEEETTCHHHHHTTT-TC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcC---------CcEEeccccHHHHHHhh-cC
Confidence 4677899999999975 77778888875 568999999999888877531 11222211111 0 111 46
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+|+|+-...-. ..++...+.|+++|+++....
T Consensus 258 ~Dvvid~~g~~------~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 258 FDFILNTVAAP------HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp EEEEEECCSSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred CCEEEECCCCH------HHHHHHHHHhccCCEEEEecc
Confidence 99998654321 135567789999999877543
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.041 Score=43.00 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=51.8
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhC------CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVG------SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
..+....|+|+|+|.|.++..+++.+. ...++..+|+|+...+.-++++... .++.+. .++.++| .
T Consensus 77 g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~-----~~v~W~-~~l~~lp--~ 148 (387)
T 1zkd_A 77 DEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWH-DSFEDVP--E 148 (387)
T ss_dssp TCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEE-SSGGGSC--C
T ss_pred CCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC-----CCeEEe-CChhhcC--C
Confidence 334445799999999999988876542 2237999999998877666555321 245443 2333443 1
Q ss_pred CceeEEEEcccccCcc
Q 027517 105 CFFDAITMGYGLRNVV 120 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~ 120 (222)
. .-+|+++.++..+|
T Consensus 149 ~-~~~viANE~fDAlP 163 (387)
T 1zkd_A 149 G-PAVILANEYFDVLP 163 (387)
T ss_dssp S-SEEEEEESSGGGSC
T ss_pred C-CeEEEeccccccCc
Confidence 2 35677777766665
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.043 Score=42.82 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=68.1
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC--CCCc---
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD--ALDL--- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d--~~~~--- 100 (222)
......++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.- .-.++... -.++
T Consensus 187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~--Ga~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~~~ 255 (378)
T 3uko_A 187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTA--GASRIIGIDIDSKKYETAKKFG---------VNEFVNPKDHDKPIQEV 255 (378)
T ss_dssp TTTCCCTTCCEEEECCSHHHHHHHHHHHHH--TCSCEEEECSCTTHHHHHHTTT---------CCEEECGGGCSSCHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcC---------CcEEEccccCchhHHHH
Confidence 445677889999999975 77888888876 44 7999999999998887642 11222211 1111
Q ss_pred --CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 101 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 101 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
....+.+|+|+-...- ...++...+.+++| |++++....
T Consensus 256 i~~~~~gg~D~vid~~g~------~~~~~~~~~~l~~g~G~iv~~G~~ 297 (378)
T 3uko_A 256 IVDLTDGGVDYSFECIGN------VSVMRAALECCHKGWGTSVIVGVA 297 (378)
T ss_dssp HHHHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred HHHhcCCCCCEEEECCCC------HHHHHHHHHHhhccCCEEEEEccc
Confidence 1112369999864331 45678888999997 999876543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.024 Score=43.25 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=65.9
Q ss_pred hhCCCCCCeEEEec-CC-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc------
Q 027517 29 WSGAKTGDNVLDVC-CG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------ 100 (222)
Q Consensus 29 ~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------ 100 (222)
.....++.+||-.| +| .|..+..+++.. +.++++++.+++.++.+++.- .-..+..+-.++
T Consensus 135 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~G---------a~~~~~~~~~~~~~~~~~ 203 (325)
T 3jyn_A 135 TYQVKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKALG---------AWETIDYSHEDVAKRVLE 203 (325)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHT---------CSEEEETTTSCHHHHHHH
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcC---------CCEEEeCCCccHHHHHHH
Confidence 34667899999999 34 477788888875 569999999998888877531 112222221111
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
......+|+|+-+..- ..+....+.|+++|+++.....
T Consensus 204 ~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 204 LTDGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFGNA 241 (325)
T ss_dssp HTTTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECCCT
T ss_pred HhCCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEecC
Confidence 0123469999875542 2466778899999999886544
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.033 Score=42.67 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=66.1
Q ss_pred HhhCCCCCCeEEEecCC--CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 28 SWSGAKTGDNVLDVCCG--SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
+.....++++||-.|++ .|..+..+++.. +.+|++++.+++.++.+.+.+. .-..+...-.+.
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~ 212 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVEELG--------FDGAIDYKNEDLAAGLK 212 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTC--------CSEEEETTTSCHHHHHH
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHcC--------CCEEEECCCHHHHHHHH
Confidence 45577889999999983 477777777774 5699999999988887733221 112222111111
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
....+.+|+|+-+.. ...+....+.|+++|++++...
T Consensus 213 ~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 213 RECPKGIDVFFDNVG-------GEILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp HHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred HhcCCCceEEEECCC-------cchHHHHHHHHhhCCEEEEEee
Confidence 011246999987554 1367888899999999987643
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.12 E-value=0.018 Score=44.03 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=52.7
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCCceeEEEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITM 112 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~ 112 (222)
+.+++|+.||.|.++.-+... +. .+.++|+++.+.+..+.+.. ... .+|+.++.. .-..+|+|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a---G~~~v~~~e~d~~a~~t~~~N~~--------~~~--~~Di~~~~~~~~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC---GAECVYSNEWDKYAQEVYEMNFG--------EKP--EGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT---TCEEEEEECCCHHHHHHHHHHHS--------CCC--BSCGGGSCGGGSCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHC---CCeEEEEEeCCHHHHHHHHHHcC--------CCC--cCCHHHcCHhhCCCCCEEEE
Confidence 468999999999999988765 34 57899999999988887752 222 577776532 1135899998
Q ss_pred cccccCc
Q 027517 113 GYGLRNV 119 (222)
Q Consensus 113 ~~~l~~~ 119 (222)
......+
T Consensus 78 gpPCQ~f 84 (327)
T 2c7p_A 78 GFPCQAF 84 (327)
T ss_dssp ECCCTTT
T ss_pred CCCCCCc
Confidence 7665555
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.19 Score=38.56 Aligned_cols=106 Identities=18% Similarity=0.252 Sum_probs=67.5
Q ss_pred HHHhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---
Q 027517 26 AVSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--- 101 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 101 (222)
........++.+||-.|+|. |..+..+++..+ ...++++|.+++-++.+++.- ....+...-.+..
T Consensus 152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~lG---------a~~~i~~~~~~~~~~~ 221 (346)
T 4a2c_A 152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKSFG---------AMQTFNSSEMSAPQMQ 221 (346)
T ss_dssp HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTT---------CSEEEETTTSCHHHHH
T ss_pred HHHHhccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHHcC---------CeEEEeCCCCCHHHHH
Confidence 34445677899999999986 556677777752 235789999999888887652 2233322211110
Q ss_pred ---CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 102 ---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 102 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
.....+|+|+-... ....++...+.++++|.+++......
T Consensus 222 ~~~~~~~g~d~v~d~~G------~~~~~~~~~~~l~~~G~~v~~g~~~~ 264 (346)
T 4a2c_A 222 SVLRELRFNQLILETAG------VPQTVELAVEIAGPHAQLALVGTLHQ 264 (346)
T ss_dssp HHHGGGCSSEEEEECSC------SHHHHHHHHHHCCTTCEEEECCCCSS
T ss_pred HhhcccCCccccccccc------ccchhhhhhheecCCeEEEEEeccCC
Confidence 11234787775432 14567778889999999987655443
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.056 Score=42.07 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=66.8
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC--CCc---
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA--LDL--- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~--~~~--- 100 (222)
...+..++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.- .-.++..+- .++
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~~~ 253 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAA--GASRIIGVGTHKDKFPKAIELG---------ATECLNPKDYDKPIYEV 253 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHcC---------CcEEEecccccchHHHH
Confidence 345667889999999876 77788888876 45 7999999999888877542 112221110 111
Q ss_pred --CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 101 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 101 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
....+.+|+|+-.-.- ...++...+.|+++ |+++.....
T Consensus 254 i~~~t~gg~Dvvid~~g~------~~~~~~~~~~l~~~~G~iv~~G~~ 295 (373)
T 1p0f_A 254 ICEKTNGGVDYAVECAGR------IETMMNALQSTYCGSGVTVVLGLA 295 (373)
T ss_dssp HHHHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred HHHHhCCCCCEEEECCCC------HHHHHHHHHHHhcCCCEEEEEccC
Confidence 0112368999864321 34677888999999 998876543
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.059 Score=42.45 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=63.0
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C-C
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P-F 102 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~ 102 (222)
...++.+||-+|+|. |..+..+++.. +. +|+++|.+++-++.+++.- .-.++..+-.++ . .
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~i~~~t 278 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHA--GASKVILSEPSEVRRNLAKELG---------ADHVIDPTKENFVEAVLDYT 278 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHT---------CSEEECTTTSCHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHcC---------CCEEEcCCCCCHHHHHHHHh
Confidence 467889999999875 77778888875 55 8999999999888887642 112222211121 0 1
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHh----cccCCCcEEEEEecCC
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESF----RVLKPGSRISVLDFNK 146 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~----~~l~~gG~l~i~~~~~ 146 (222)
....+|+|+-.-. .....+..+. +.++++|++++.....
T Consensus 279 ~g~g~D~vid~~g-----~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~ 321 (404)
T 3ip1_A 279 NGLGAKLFLEATG-----VPQLVWPQIEEVIWRARGINATVAIVARAD 321 (404)
T ss_dssp TTCCCSEEEECSS-----CHHHHHHHHHHHHHHCSCCCCEEEECSCCC
T ss_pred CCCCCCEEEECCC-----CcHHHHHHHHHHHHhccCCCcEEEEeCCCC
Confidence 2346999985432 1222333444 4449999998865443
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.039 Score=42.21 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=64.0
Q ss_pred HhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 28 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
+.....++.+||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. + ....+-..+..+.
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~~----g----~~~~~d~~~~~~~~~~~~ 208 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQI----G----FDAAFNYKTVNSLEEALK 208 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----T----CSEEEETTSCSCHHHHHH
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhc----C----CcEEEecCCHHHHHHHHH
Confidence 3446678899999997 4466677777663 56999999998888777432 1 1111111111111
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
....+.+|+++.+..- ..++...+.|+++|++++...
T Consensus 209 ~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 209 KASPDGYDCYFDNVGG-------EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp HHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred HHhCCCCeEEEECCCh-------HHHHHHHHHHhcCCEEEEEec
Confidence 0112469999876542 347788899999999987643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.024 Score=43.27 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=43.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
+.++... ..++..|||.-||+|..+....+. +.+++|+|+++...+.+++++..
T Consensus 243 ~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~ 296 (323)
T 1boo_A 243 EFFIRML-TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLD 296 (323)
T ss_dssp HHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHHh-CCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 3344433 367889999999999998876654 56999999999999999999754
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.052 Score=42.28 Aligned_cols=101 Identities=10% Similarity=0.144 Sum_probs=66.2
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC--CCc---
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA--LDL--- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~--~~~--- 100 (222)
......++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.- .-.++...- .++
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~~~ 254 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSA--GAKRIIAVDLNPDKFEKAKVFG---------ATDFVNPNDHSEPISQV 254 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTT---------CCEEECGGGCSSCHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhC---------CceEEeccccchhHHHH
Confidence 344667889999999875 77778888875 55 7999999999888877541 111221110 111
Q ss_pred --CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 101 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 101 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
....+.+|+|+-+..- ...++...+.|+++ |+++.....
T Consensus 255 ~~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G~~ 296 (374)
T 1cdo_A 255 LSKMTNGGVDFSLECVGN------VGVMRNALESCLKGWGVSVLVGWT 296 (374)
T ss_dssp HHHHHTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred HHHHhCCCCCEEEECCCC------HHHHHHHHHHhhcCCcEEEEEcCC
Confidence 0111368999864421 34677888999999 998876543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.065 Score=41.65 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=66.5
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC--CCc---
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA--LDL--- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~--~~~--- 100 (222)
......++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.- .-.++...- .++
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~--Ga~~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~~~ 252 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVA--GASRIIGVDINKDKFARAKEFG---------ATECINPQDFSKPIQEV 252 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHHHT---------CSEEECGGGCSSCHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcC---------CceEeccccccccHHHH
Confidence 344667889999999875 77778888876 45 7999999999888877541 111221110 111
Q ss_pred --CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 101 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 101 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
....+.+|+|+-+..- ...++...+.|+++ |+++.....
T Consensus 253 v~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G~~ 294 (373)
T 2fzw_A 253 LIEMTDGGVDYSFECIGN------VKVMRAALEACHKGWGVSVVVGVA 294 (373)
T ss_dssp HHHHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred HHHHhCCCCCEEEECCCc------HHHHHHHHHhhccCCcEEEEEecC
Confidence 0112368999864431 34677888999999 999876543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.91 E-value=0.065 Score=41.70 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=66.0
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC--CCc---
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA--LDL--- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~--~~~--- 100 (222)
......++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.- .-.++..+- .++
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~~~ 253 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAA--GAARIIGVDINKDKFAKAKEVG---------ATECVNPQDYKKPIQEV 253 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHhC---------CceEecccccchhHHHH
Confidence 344667889999999876 77778888875 55 7999999999888876531 111221110 111
Q ss_pred --CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 101 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 101 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
....+.+|+|+-+..- ...++...+.|+++ |++++....
T Consensus 254 ~~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G~~ 295 (374)
T 2jhf_A 254 LTEMSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIVGVP 295 (374)
T ss_dssp HHHHTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEECSCC
T ss_pred HHHHhCCCCcEEEECCCC------HHHHHHHHHHhhcCCcEEEEeccC
Confidence 0112368999864421 34577888899999 998876443
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.047 Score=42.03 Aligned_cols=100 Identities=21% Similarity=0.171 Sum_probs=65.4
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
...+. ++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.- .-.++..+-.++
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~~G---------a~~~~~~~~~~~~~~v~ 229 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKKVG---------ADYVINPFEEDVVKEVM 229 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHHT---------CSEEECTTTSCHHHHHH
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhC---------CCEEECCCCcCHHHHHH
Confidence 33456 888999999964 67777888774 56 8999999998888776431 112222211111
Q ss_pred C-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 101 P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 101 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
. .....+|+|+-+... ...++...+.|+++|+++.....
T Consensus 230 ~~~~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g~~ 269 (348)
T 2d8a_A 230 DITDGNGVDVFLEFSGA------PKALEQGLQAVTPAGRVSLLGLY 269 (348)
T ss_dssp HHTTTSCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred HHcCCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEccC
Confidence 0 122359999865431 34677788899999998876543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.032 Score=42.92 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=65.0
Q ss_pred HhhCCCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----
Q 027517 28 SWSGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 101 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (222)
......++.+||-.|+ | .|..+..+++.. +.++++++.+++.++.+++.- .-.++..+ .++.
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~g---------a~~v~~~~-~~~~~~v~ 220 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKSVG---------ADIVLPLE-EGWAKAVR 220 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHT---------CSEEEESS-TTHHHHHH
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhcC---------CcEEecCc-hhHHHHHH
Confidence 4456678999999997 3 477888888875 569999999998888777641 11223222 2211
Q ss_pred --CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.....+|+|+-+..-. .+....+.|+++|++++...
T Consensus 221 ~~~~~~g~Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 221 EATGGAGVDMVVDPIGGP-------AFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp HHTTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC--
T ss_pred HHhCCCCceEEEECCchh-------HHHHHHHhhcCCCEEEEEEc
Confidence 1233699999755421 46677889999999987643
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.061 Score=41.90 Aligned_cols=100 Identities=11% Similarity=0.113 Sum_probs=65.8
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC--CCc---
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA--LDL--- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~--~~~--- 100 (222)
......++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.- .-.++..+- .++
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~~~ 257 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKALG---------ATDCLNPRELDKPVQDV 257 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHhC---------CcEEEccccccchHHHH
Confidence 344667889999999875 77778888875 55 7999999999888876542 111221110 111
Q ss_pred --CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEec
Q 027517 101 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 144 (222)
Q Consensus 101 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~ 144 (222)
....+.+|+|+-+-.- ...++...+.|+++ |++++...
T Consensus 258 v~~~~~~g~Dvvid~~G~------~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 258 ITELTAGGVDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp HHHHHTSCBSEEEESSCC------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred HHHHhCCCccEEEECCCC------HHHHHHHHHHhhcCCCEEEEECC
Confidence 0111368999854321 34677888999999 99887654
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.094 Score=40.65 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=65.1
Q ss_pred hhCCCCCCeEEEec--CCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C
Q 027517 29 WSGAKTGDNVLDVC--CGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG--~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~ 101 (222)
.....++.+||-.| .|.|..+..+++.. +.+|++++.+++.++.+++.- .-.++..+-.++ .
T Consensus 158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~G---------a~~~~~~~~~~~~~~~~~ 226 (362)
T 2c0c_A 158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKSLG---------CDRPINYKTEPVGTVLKQ 226 (362)
T ss_dssp HTCCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT---------CSEEEETTTSCHHHHHHH
T ss_pred hcCCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcC---------CcEEEecCChhHHHHHHH
Confidence 34667889999999 34578888888874 568999999988887776531 112222211111 0
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
...+.+|+|+-+..- ..++...+.|+++|+++....
T Consensus 227 ~~~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 227 EYPEGVDVVYESVGG-------AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp HCTTCEEEEEECSCT-------HHHHHHHHHEEEEEEEEECCC
T ss_pred hcCCCCCEEEECCCH-------HHHHHHHHHHhcCCEEEEEeC
Confidence 112469999875541 367778889999999887643
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.026 Score=43.45 Aligned_cols=97 Identities=11% Similarity=-0.017 Sum_probs=64.3
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC----CC-CCcCCCC
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG----DA-LDLPFSD 104 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----d~-~~~~~~~ 104 (222)
.. ++.+||-+|+|. |..+..+++...++.+|+++|.+++.++.+++.- .-.++.. |. ..+. ..
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~~~~-~g 236 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELG---------ADYVSEMKDAESLINKLT-DG 236 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHT---------CSEEECHHHHHHHHHHHH-TT
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhC---------CCEEeccccchHHHHHhh-cC
Confidence 56 889999999975 6777888887522468999999998888876531 1111111 10 1111 12
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..+|+|+-...- ...++...+.|+++|+++....
T Consensus 237 ~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 237 LGASIAIDLVGT------EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp CCEEEEEESSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCccEEEECCCC------hHHHHHHHHHhhcCCEEEEeCC
Confidence 369999865432 3467788889999999887544
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.035 Score=42.31 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=42.6
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCCh---hHHHHHhcchh
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK---NQLSMASSRQD 80 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~---~~~~~~~~~~~ 80 (222)
+.++... ..++..|||.-||+|..+....+. +.+++|+|+++ ...+.+++++.
T Consensus 233 ~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 233 ERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp HHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred HHHHHHh-CCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHH
Confidence 3444444 367889999999999999887766 56899999999 99999998874
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.044 Score=42.42 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=63.5
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC-Cc--CCCCC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL-DL--PFSDC 105 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~--~~~~~ 105 (222)
.+..++.+||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++.- .-.++..+-. +. ... +
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~lG---------a~~v~~~~~~~~~~~~~~-~ 242 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKMG---------ADHYIATLEEGDWGEKYF-D 242 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHHT---------CSEEEEGGGTSCHHHHSC-S
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHcC---------CCEEEcCcCchHHHHHhh-c
Confidence 4667899999999865 77778888875 558999999998888876531 1122221111 11 011 4
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+|+|+-...-.. ...++...+.|+++|+++....
T Consensus 243 ~~D~vid~~g~~~----~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 243 TFDLIVVCASSLT----DIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp CEEEEEECCSCST----TCCTTTGGGGEEEEEEEEECCC
T ss_pred CCCEEEECCCCCc----HHHHHHHHHHhcCCCEEEEecC
Confidence 6999986554300 1123457788999999877543
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.14 Score=39.71 Aligned_cols=93 Identities=13% Similarity=0.108 Sum_probs=62.0
Q ss_pred CCCeEEEec-CCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC--CCC-c-CCCCCce
Q 027517 34 TGDNVLDVC-CGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD--ALD-L-PFSDCFF 107 (222)
Q Consensus 34 ~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d--~~~-~-~~~~~~~ 107 (222)
++.+||-.| +|. |..+..+++.+ .+.+|+++|.+++.++.+++.- .-.++... ..+ + ....+.+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~-~g~~Vi~~~~~~~~~~~~~~lG---------ad~vi~~~~~~~~~v~~~~~~g~ 240 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQR-TDLTVIATASRPETQEWVKSLG---------AHHVIDHSKPLAAEVAALGLGAP 240 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHTT---------CSEEECTTSCHHHHHHTTCSCCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHcC---------CCEEEeCCCCHHHHHHHhcCCCc
Confidence 678999998 554 77888888864 3569999999998888876542 11222111 110 0 1223469
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
|+|+-+.. -...++...+.|+++|+++..
T Consensus 241 Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 241 AFVFSTTH------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred eEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence 99886432 235678888999999999876
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.023 Score=43.65 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=55.3
Q ss_pred CeEEEecCCCChhHHHHHHHhCCC-CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---CCCceeEEE
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---SDCFFDAIT 111 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v~ 111 (222)
.+++|+-||.|..+.-+.+. +-. ..+.++|+++.+.+.-+.+. +...++..|+.++.. +...+|+++
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~--------~~~~~~~~DI~~~~~~~~~~~~~D~l~ 74 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNF--------PETNLLNRNIQQLTPQVIKKWNVDTIL 74 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECCCGGGCCHHHHHHTTCCEEE
T ss_pred CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhC--------CCCceeccccccCCHHHhccCCCCEEE
Confidence 47999999999999988876 322 24789999999988877765 345567788877532 223589999
Q ss_pred EcccccCc
Q 027517 112 MGYGLRNV 119 (222)
Q Consensus 112 ~~~~l~~~ 119 (222)
.......+
T Consensus 75 ggpPCQ~f 82 (333)
T 4h0n_A 75 MSPPCQPF 82 (333)
T ss_dssp ECCCCCCS
T ss_pred ecCCCcch
Confidence 87766555
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.048 Score=41.04 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=53.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---C-CCce
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---S-DCFF 107 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~-~~~~ 107 (222)
....+++|+-||.|.++.-+.+. +-... +.++|+++.+.+.-+.+. +...+...|+.++.. + .+.+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~--------~~~~~~~~DI~~i~~~~i~~~~~~ 84 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH--------QGKIMYVGDVRSVTQKHIQEWGPF 84 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT--------TTCEEEECCGGGCCHHHHHHTCCC
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC--------CCCceeCCChHHccHHHhcccCCc
Confidence 44569999999999999888765 22222 589999999887766554 345677888887631 1 1358
Q ss_pred eEEEEccccc
Q 027517 108 DAITMGYGLR 117 (222)
Q Consensus 108 D~v~~~~~l~ 117 (222)
|+++......
T Consensus 85 Dll~ggpPCQ 94 (295)
T 2qrv_A 85 DLVIGGSPCN 94 (295)
T ss_dssp SEEEECCCCG
T ss_pred CEEEecCCCc
Confidence 9999755433
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.046 Score=41.84 Aligned_cols=98 Identities=19% Similarity=0.130 Sum_probs=64.6
Q ss_pred hCCCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC------
Q 027517 30 SGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------ 101 (222)
Q Consensus 30 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------ 101 (222)
....++.+||-.|+ | .|..+..+++.. +.++++++.+++.++.+++.- .-.++..+-.+..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~g---------a~~~~~~~~~~~~~~~~~~ 212 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKEYG---------AEYLINASKEDILRQVLKF 212 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT---------CSEEEETTTSCHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcC---------CcEEEeCCCchHHHHHHHH
Confidence 36678999999994 3 477777888774 569999999998888776541 1122222212210
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.....+|+|+-+..- ..++...+.|+++|+++.....
T Consensus 213 ~~~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~~ 249 (334)
T 3qwb_A 213 TNGKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFGNA 249 (334)
T ss_dssp TTTSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECCCT
T ss_pred hCCCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEcCC
Confidence 123469999875542 2466677889999999876443
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.067 Score=41.07 Aligned_cols=100 Identities=19% Similarity=0.170 Sum_probs=64.9
Q ss_pred HhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcC---
Q 027517 28 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLP--- 101 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~--- 101 (222)
+.....++.+||-.|+ |.|..+..+++.. +.++++++.+++.++.+++.+. .-..+. .+..++.
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~~~g--------~~~~~d~~~~~~~~~~~ 218 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKTKFG--------FDDAFNYKEESDLTAAL 218 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTSC--------CSEEEETTSCSCSHHHH
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHcC--------CceEEecCCHHHHHHHH
Confidence 3446678899999997 3477777777764 5689999999988887763321 111221 1111110
Q ss_pred --CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
...+.+|+|+.+.. ...++...+.|+++|++++...
T Consensus 219 ~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 219 KRCFPNGIDIYFENVG-------GKMLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp HHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred HHHhCCCCcEEEECCC-------HHHHHHHHHHHhcCCEEEEEcc
Confidence 11246999987553 1367888899999999987543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.07 Score=40.92 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=64.2
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----CC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS 103 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 103 (222)
....++.+||-+|+|. |..+..+++.. +.+++++|.+++.++.+++.- .-.++...-.++. ..
T Consensus 160 ~~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~lG---------a~~~~d~~~~~~~~~~~~~~ 228 (339)
T 1rjw_A 160 TGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKELG---------ADLVVNPLKEDAAKFMKEKV 228 (339)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTT---------CSEEECTTTSCHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHCC---------CCEEecCCCccHHHHHHHHh
Confidence 4677889999999864 67777778774 569999999998888776431 1112211101110 01
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+.+|+|+-+... ...++...+.|+++|+++....
T Consensus 229 -~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 229 -GGVHAAVVTAVS------KPAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp -SSEEEEEESSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred -CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEecc
Confidence 358999865431 3467788889999999887544
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.062 Score=41.36 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=64.9
Q ss_pred hhCCCCCCeEEEecCC--CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C
Q 027517 29 WSGAKTGDNVLDVCCG--SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~ 101 (222)
..+..++.+||-.|+| .|..+..+++.. .+.+|+++|.+++.++.+++. + ....+...+ .+. .
T Consensus 165 ~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~-~Ga~Vi~~~~~~~~~~~~~~~----g----~~~~~~~~~-~~~~~~~~~ 234 (347)
T 1jvb_A 165 KASLDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRA----G----ADYVINASM-QDPLAEIRR 234 (347)
T ss_dssp HTTCCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHH----T----CSEEEETTT-SCHHHHHHH
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHh----C----CCEEecCCC-ccHHHHHHH
Confidence 3566788999999988 356666777664 146899999999888777543 1 111111112 111 1
Q ss_pred CCC-CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSD-CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
... +.+|+|+.+..- ...++...+.|+++|+++.....
T Consensus 235 ~~~~~~~d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g~~ 273 (347)
T 1jvb_A 235 ITESKGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMVGLF 273 (347)
T ss_dssp HTTTSCEEEEEESCCC------HHHHTTGGGGEEEEEEEEECCSS
T ss_pred HhcCCCceEEEECCCC------HHHHHHHHHHHhcCCEEEEECCC
Confidence 111 469999865432 34677888999999998876443
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.16 Score=38.90 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=64.3
Q ss_pred HHhhCCCCCCeEEEecCCCC-hhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 27 VSWSGAKTGDNVLDVCCGSG-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
+......++.+||=+|+|.+ ..+..+++.. .+.+|+++|.+++-++.+++.-. -.++...-.+.
T Consensus 156 l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~-~g~~Vi~~~~~~~r~~~~~~~Ga---------~~~i~~~~~~~~~~v~ 225 (348)
T 4eez_A 156 IKVSGVKPGDWQVIFGAGGLGNLAIQYAKNV-FGAKVIAVDINQDKLNLAKKIGA---------DVTINSGDVNPVDEIK 225 (348)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHHHTTC---------SEEEEC-CCCHHHHHH
T ss_pred ecccCCCCCCEEEEEcCCCccHHHHHHHHHh-CCCEEEEEECcHHHhhhhhhcCC---------eEEEeCCCCCHHHHhh
Confidence 34456788999999999874 4455556553 35699999999988877776531 12222111111
Q ss_pred C-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 101 P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
. .....+|.++.... -...+....+.++++|++++...
T Consensus 226 ~~t~g~g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 226 KITGGLGVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp HHTTSSCEEEEEECCS------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred hhcCCCCceEEEEecc------CcchhheeheeecCCceEEEEec
Confidence 0 12234666665332 14567788889999999887644
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.063 Score=41.31 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=64.2
Q ss_pred hCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcC-----
Q 027517 30 SGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLP----- 101 (222)
Q Consensus 30 ~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~----- 101 (222)
....++.+||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. + .. ..+. .+..++.
T Consensus 165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~~----g----~~-~~~d~~~~~~~~~~~~~ 233 (347)
T 2hcy_A 165 ANLMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRSI----G----GE-VFIDFTKEKDIVGAVLK 233 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHHT----T----CC-EEEETTTCSCHHHHHHH
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHHc----C----Cc-eEEecCccHhHHHHHHH
Confidence 36678899999998 3467777777764 56999999988877766543 1 11 1221 1111110
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
...+.+|+|+.+... ...++...+.|+++|+++.....
T Consensus 234 ~~~~~~D~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g~~ 271 (347)
T 2hcy_A 234 ATDGGAHGVINVSVS------EAAIEASTRYVRANGTTVLVGMP 271 (347)
T ss_dssp HHTSCEEEEEECSSC------HHHHHHHTTSEEEEEEEEECCCC
T ss_pred HhCCCCCEEEECCCc------HHHHHHHHHHHhcCCEEEEEeCC
Confidence 011258999875542 35678889999999998876443
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.18 Score=33.15 Aligned_cols=92 Identities=16% Similarity=0.066 Sum_probs=55.9
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeE
Q 027517 35 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~ 109 (222)
..+|+=+|+|. |......+.. .+.+|+++|.+++.++.+++. .+.++.+|..+.. ..-..+|+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~~~~~~~~~~----------g~~~i~gd~~~~~~l~~a~i~~ad~ 74 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSRTRVDELRER----------GVRAVLGNAANEEIMQLAHLECAKW 74 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHT----------TCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHc----------CCCEEECCCCCHHHHHhcCcccCCE
Confidence 35799999875 4444333333 356899999999888776642 5677888887632 12246888
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
|++...-. .....+....+.+.|+..++.
T Consensus 75 vi~~~~~~---~~n~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 75 LILTIPNG---YEAGEIVASARAKNPDIEIIA 103 (140)
T ss_dssp EEECCSCH---HHHHHHHHHHHHHCSSSEEEE
T ss_pred EEEECCCh---HHHHHHHHHHHHHCCCCeEEE
Confidence 88743211 112223334455667776654
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.075 Score=40.82 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=67.5
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC------CC
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------FS 103 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~ 103 (222)
...++.+||-+|+|. |..+..+++.. .+.+|+++|.+++-++.+++.- .-.++..+- +.. ..
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~-g~~~Vi~~~~~~~~~~~~~~lG---------a~~~i~~~~-~~~~~v~~~t~ 236 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAV-SAARVIAVDLDDDRLALAREVG---------ADAAVKSGA-GAADAIRELTG 236 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESCHHHHHHHHHTT---------CSEEEECST-THHHHHHHHHG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC---------CCEEEcCCC-cHHHHHHHHhC
Confidence 567889999999976 77788888875 2468999999999888887652 112222211 110 11
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
...+|+|+-.-.- ...++...+.|+++|++++.....
T Consensus 237 g~g~d~v~d~~G~------~~~~~~~~~~l~~~G~iv~~G~~~ 273 (345)
T 3jv7_A 237 GQGATAVFDFVGA------QSTIDTAQQVVAVDGHISVVGIHA 273 (345)
T ss_dssp GGCEEEEEESSCC------HHHHHHHHHHEEEEEEEEECSCCT
T ss_pred CCCCeEEEECCCC------HHHHHHHHHHHhcCCEEEEECCCC
Confidence 2368999864321 346788889999999998765443
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.036 Score=43.32 Aligned_cols=100 Identities=20% Similarity=0.131 Sum_probs=65.7
Q ss_pred hhC-CCCCCeEEEecCCC-ChhHHHHHHHhCCC-CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC---CCC---
Q 027517 29 WSG-AKTGDNVLDVCCGS-GDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD---ALD--- 99 (222)
Q Consensus 29 ~~~-~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d---~~~--- 99 (222)
..+ ..++.+||-+|+|. |..+..+++.. + .+|++++.+++.++.+++.- .-.++..+ -.+
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~~~ 257 (380)
T 1vj0_A 189 EYPESFAGKTVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAEEIG---------ADLTLNRRETSVEERRK 257 (380)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHHHTT---------CSEEEETTTSCHHHHHH
T ss_pred hcCCCCCCCEEEEECcCHHHHHHHHHHHHc--CCceEEEEcCCHHHHHHHHHcC---------CcEEEeccccCcchHHH
Confidence 345 67889999999775 77778888875 5 48999999999888877531 11222222 111
Q ss_pred -c-C-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 100 -L-P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 100 -~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+ . .....+|+|+-+..- ...++...+.|+++|+++.....
T Consensus 258 ~v~~~~~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G~~ 300 (380)
T 1vj0_A 258 AIMDITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAGVA 300 (380)
T ss_dssp HHHHHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred HHHHHhCCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEEecC
Confidence 1 0 122369999865431 23466778889999998876543
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.13 Score=39.14 Aligned_cols=96 Identities=24% Similarity=0.188 Sum_probs=60.8
Q ss_pred HhhCCCCCCeEEEec-CCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCCCC
Q 027517 28 SWSGAKTGDNVLDVC-CGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSD 104 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~ 104 (222)
...+..++.+||-+| +|. |..+..+++.. +.++++++ +++..+.+++. + .-.++..+-.+ +...-
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~~~~~l----G-----a~~~i~~~~~~~~~~~~ 213 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHAFLKAL----G-----AEQCINYHEEDFLLAIS 213 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHHHHHHH----T-----CSEEEETTTSCHHHHCC
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHHHHHHc----C-----CCEEEeCCCcchhhhhc
Confidence 556778899999997 554 78888888875 56888887 45446655543 1 11223222122 11111
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+.+|+|+-+-. ...+....+.|+++|+++..
T Consensus 214 ~g~D~v~d~~g-------~~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 214 TPVDAVIDLVG-------GDVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp SCEEEEEESSC-------HHHHHHHGGGEEEEEEEEEC
T ss_pred cCCCEEEECCC-------cHHHHHHHHhccCCCEEEEe
Confidence 45899886433 12237788999999999865
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.11 Score=39.81 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=62.9
Q ss_pred CCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C-C
Q 027517 31 GAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P-F 102 (222)
Q Consensus 31 ~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~ 102 (222)
...++.+||-.|+ |.|..+..+++.. +.++++++.+++.++.+++. + .. .++...-.+. . .
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~~----g----a~-~~~d~~~~~~~~~~~~~~ 231 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKAL----G----AD-ETVNYTHPDWPKEVRRLT 231 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH----T----CS-EEEETTSTTHHHHHHHHT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhc----C----CC-EEEcCCcccHHHHHHHHh
Confidence 5678899999998 4577788888774 56999999999888877642 1 11 1221111111 0 1
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
....+|+|+-+.. . ..++...+.|+++|+++....
T Consensus 232 ~~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 232 GGKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp TTTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESSC
T ss_pred CCCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEec
Confidence 2246999997665 2 135667788899999877544
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.083 Score=40.78 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=62.7
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----C-
Q 027517 29 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----P- 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~- 101 (222)
..+..++.+||-.|+ |.|..+..+++.. +.++++++.+++.++.+++.- .-..+..+-.+. .
T Consensus 165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~g---------a~~~~d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 165 SACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQNG---------AHEVFNHREVNYIDKIKK 233 (351)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT---------CSEEEETTSTTHHHHHHH
T ss_pred hhCCCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHHcC---------CCEEEeCCCchHHHHHHH
Confidence 345678899999997 3467777777764 568999999998877665431 111222111111 0
Q ss_pred -CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.....+|+|+.+..- ..+....+.++++|+++...
T Consensus 234 ~~~~~~~D~vi~~~G~-------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 234 YVGEKGIDIIIEMLAN-------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHCTTCEEEEEESCHH-------HHHHHHHHHEEEEEEEEECC
T ss_pred HcCCCCcEEEEECCCh-------HHHHHHHHhccCCCEEEEEe
Confidence 122369999875531 24667788999999988764
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.054 Score=41.91 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=62.1
Q ss_pred hCCC-CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCCcCCCCCc
Q 027517 30 SGAK-TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCF 106 (222)
Q Consensus 30 ~~~~-~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~ 106 (222)
.... ++.+||-+|+|. |..+..+++.. +.++++++.+++.++.+++.+.. . .++.. +........+.
T Consensus 175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~~lGa------~--~vi~~~~~~~~~~~~~g 244 (357)
T 2cf5_A 175 FGLKQPGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQDLGA------D--DYVIGSDQAKMSELADS 244 (357)
T ss_dssp TSTTSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHTTSCC------S--CEEETTCHHHHHHSTTT
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHcCC------c--eeeccccHHHHHHhcCC
Confidence 4556 889999999875 67777888876 46899999999888777633311 1 11211 11111101135
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+|+|+-...-. ..++...+.++++|+++....
T Consensus 245 ~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 245 LDYVIDTVPVH------HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp EEEEEECCCSC------CCSHHHHTTEEEEEEEEECSC
T ss_pred CCEEEECCCCh------HHHHHHHHHhccCCEEEEeCC
Confidence 99998654321 123456778999999887644
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.067 Score=41.37 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=62.1
Q ss_pred hhCCCCC------CeEEEecCCC-ChhH-HHHH-HHhCCCCc-EEEEeCChh---HHHHHhcchhhhhhhcCCCeeEEeC
Q 027517 29 WSGAKTG------DNVLDVCCGS-GDLS-FLLS-EQVGSQGK-VIGLDFSKN---QLSMASSRQDLVSKACYKNIEWVEG 95 (222)
Q Consensus 29 ~~~~~~~------~~vLdiG~G~-G~~~-~~l~-~~~~~~~~-~~~~D~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~ 95 (222)
..+..++ .+||-+|+|. |..+ ..++ +.. +.+ |+++|.+++ .++.+++.- ......
T Consensus 161 ~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~~lG----------a~~v~~ 228 (357)
T 2b5w_A 161 HAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIEELD----------ATYVDS 228 (357)
T ss_dssp HHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHHHTT----------CEEEET
T ss_pred hcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHHHcC----------CcccCC
Confidence 3445677 8999999864 6666 7777 654 556 999999888 777776531 111111
Q ss_pred CCCCcC----CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 96 DALDLP----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 96 d~~~~~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+-.++. . .+.+|+|+-...- ...++...+.|+++|+++.....
T Consensus 229 ~~~~~~~i~~~-~gg~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~g~~ 275 (357)
T 2b5w_A 229 RQTPVEDVPDV-YEQMDFIYEATGF------PKHAIQSVQALAPNGVGALLGVP 275 (357)
T ss_dssp TTSCGGGHHHH-SCCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred CccCHHHHHHh-CCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEEeCC
Confidence 111110 1 1268999854321 34577888899999998876543
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.086 Score=40.67 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=65.1
Q ss_pred HhhCCCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----
Q 027517 28 SWSGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 101 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (222)
......++.+||-.|+ | .|..+..+++.. +.+|+++|.+++.++.+++.- .-..+..+-.++.
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~lG---------a~~~~~~~~~~~~~~~~ 229 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACERLG---------AKRGINYRSEDFAAVIK 229 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHT---------CSEEEETTTSCHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhcC---------CCEEEeCCchHHHHHHH
Confidence 3456678999999953 3 377777888774 568999999999888877531 1122222211110
Q ss_pred -CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
...+.+|+|+-+..-. .+....+.|+++|+++.....
T Consensus 230 ~~~~~g~Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~g~~ 267 (353)
T 4dup_A 230 AETGQGVDIILDMIGAA-------YFERNIASLAKDGCLSIIAFL 267 (353)
T ss_dssp HHHSSCEEEEEESCCGG-------GHHHHHHTEEEEEEEEECCCT
T ss_pred HHhCCCceEEEECCCHH-------HHHHHHHHhccCCEEEEEEec
Confidence 0134699998755421 456677899999998876543
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.078 Score=40.37 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=63.4
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C
Q 027517 29 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~ 101 (222)
..+..++.+||-.|+ |.|..+..+++.. +.+++++|.+++.++.+++. + .. ..+..+-.+. .
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~~----g----~~-~~~~~~~~~~~~~~~~ 203 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALKA----G----AW-QVINYREEDLVERLKE 203 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHH
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C----CC-EEEECCCccHHHHHHH
Confidence 345678899999994 3467777777764 56899999998887777652 1 11 1221111111 0
Q ss_pred -CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.....+|+++.+.. ...++...+.|+++|+++.....
T Consensus 204 ~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~~ 241 (327)
T 1qor_A 204 ITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFGNS 241 (327)
T ss_dssp HTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECCCT
T ss_pred HhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEecC
Confidence 11236999987654 13467778899999998876543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.053 Score=42.12 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=61.0
Q ss_pred hCCC-CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCCcCCCCCc
Q 027517 30 SGAK-TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCF 106 (222)
Q Consensus 30 ~~~~-~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~ 106 (222)
.... ++.+||-+|+|. |..+..+++.. +.+|++++.+++.++.+++.+. .-.++.. +...+....+.
T Consensus 182 ~~~~~~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~lG--------a~~v~~~~~~~~~~~~~~~ 251 (366)
T 1yqd_A 182 FGLDEPGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALKNFG--------ADSFLVSRDQEQMQAAAGT 251 (366)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHTSC--------CSEEEETTCHHHHHHTTTC
T ss_pred cCcCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhcC--------CceEEeccCHHHHHHhhCC
Confidence 4556 888999999865 66777778775 5689999999988877663331 1112211 11111101136
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+|+|+-+..... .++...+.|+++|+++....
T Consensus 252 ~D~vid~~g~~~------~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 252 LDGIIDTVSAVH------PLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp EEEEEECCSSCC------CSHHHHHHEEEEEEEEECCC
T ss_pred CCEEEECCCcHH------HHHHHHHHHhcCCEEEEEcc
Confidence 999986544321 13345667899999877544
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.17 Score=40.49 Aligned_cols=97 Identities=20% Similarity=0.165 Sum_probs=63.9
Q ss_pred hCCCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-------
Q 027517 30 SGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------- 100 (222)
Q Consensus 30 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------- 100 (222)
....++.+||-+|+ | .|..+..+++.. +.++++++.+++-++.+++.- .-.++...-.+.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~d~~~~~~~~ 292 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRAMG---------AEAIIDRNAEGYRFWKDEN 292 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHT---------CCEEEETTTTTCCSEEETT
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC---------CcEEEecCcCccccccccc
Confidence 45678899999997 4 377788888875 668999998888888876541 111221111110
Q ss_pred --------------C--CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 101 --------------P--FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 --------------~--~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
. .....+|+|+-+.. ...+....+.++++|+++....
T Consensus 293 ~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G~ 345 (456)
T 3krt_A 293 TQDPKEWKRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTCAS 345 (456)
T ss_dssp EECHHHHHHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEESCC
T ss_pred ccchHHHHHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEEec
Confidence 0 12246999986433 2457778889999999987543
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.16 Score=39.32 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=58.8
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCCh---hHHHHHhcchhhhhhhcCCCeeEEeCC-CCC-cCCCCCcee
Q 027517 35 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSK---NQLSMASSRQDLVSKACYKNIEWVEGD-ALD-LPFSDCFFD 108 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~-~~~~~~~~D 108 (222)
+.+||-.|+|. |..+..+++.. +.+|+++|.++ +.++.+++. + ......+ +.+ +....+.+|
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~~----g------a~~v~~~~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEET----K------TNYYNSSNGYDKLKDSVGKFD 248 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHHH----T------CEEEECTTCSHHHHHHHCCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHHh----C------CceechHHHHHHHHHhCCCCC
Confidence 88999999854 66667777765 45999999988 766666543 1 1222111 110 000014599
Q ss_pred EEEEcccccCcccHHHHH-HHHhcccCCCcEEEEEecC
Q 027517 109 AITMGYGLRNVVDKRKAL-EESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l-~~~~~~l~~gG~l~i~~~~ 145 (222)
+|+.+.... ..+ +...+.|+++|+++.....
T Consensus 249 ~vid~~g~~------~~~~~~~~~~l~~~G~iv~~g~~ 280 (366)
T 2cdc_A 249 VIIDATGAD------VNILGNVIPLLGRNGVLGLFGFS 280 (366)
T ss_dssp EEEECCCCC------THHHHHHGGGEEEEEEEEECSCC
T ss_pred EEEECCCCh------HHHHHHHHHHHhcCCEEEEEecC
Confidence 998755421 245 7788999999998876544
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.16 Score=38.81 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=63.6
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C
Q 027517 29 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~ 101 (222)
..+..++.+||-.|+ |.|..+..+++.. +.+++++|.+++.++.+++. + .. ..+..+-.+. .
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~~----g----~~-~~~d~~~~~~~~~i~~ 208 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARKL----G----CH-HTINYSTQDFAEVVRE 208 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHH
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----C----CC-EEEECCCHHHHHHHHH
Confidence 345678899999995 4577777777764 56999999998877777542 1 11 1221111111 0
Q ss_pred -CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.....+|+++.+..- ..++...+.|+++|+++.....
T Consensus 209 ~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~~ 246 (333)
T 1wly_A 209 ITGGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYGHA 246 (333)
T ss_dssp HHTTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECCCT
T ss_pred HhCCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEecC
Confidence 112359999876542 2466778899999998776543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.019 Score=43.25 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=40.8
Q ss_pred CCeeEEeCCCCC-cC-CCCCceeEEEEcccccCcc--------------------cHHHHHHHHhcccCCCcEEEEEe
Q 027517 88 KNIEWVEGDALD-LP-FSDCFFDAITMGYGLRNVV--------------------DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 88 ~~i~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~--------------------~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.++.++++|+.+ ++ +++++||+|+++-...... ....+++++.++|+|||.+++..
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 467899999877 32 4567899999987764321 12457789999999999997753
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.22 Score=37.75 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=60.5
Q ss_pred eEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CCCCCceeEEEEc
Q 027517 37 NVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFDAITMG 113 (222)
Q Consensus 37 ~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~ 113 (222)
+||-.|+ | .|..+..+++.. +.+|++++.+++.++.+++.-. ...+-..+.... ....+.+|+|+-+
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~lGa--------~~vi~~~~~~~~~~~~~~~~d~v~d~ 218 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKSLGA--------NRILSRDEFAESRPLEKQLWAGAIDT 218 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTC--------SEEEEGGGSSCCCSSCCCCEEEEEES
T ss_pred eEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhcCC--------CEEEecCCHHHHHhhcCCCccEEEEC
Confidence 4999997 4 478888888885 5699999999998888876421 111111111111 1223468988754
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.. ...++...+.|+++|+++.....
T Consensus 219 ~g-------~~~~~~~~~~l~~~G~iv~~G~~ 243 (324)
T 3nx4_A 219 VG-------DKVLAKVLAQMNYGGCVAACGLA 243 (324)
T ss_dssp SC-------HHHHHHHHHTEEEEEEEEECCCT
T ss_pred CC-------cHHHHHHHHHHhcCCEEEEEecC
Confidence 32 22788889999999999876544
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.15 Score=34.11 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=62.6
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CC-
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PF- 102 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~- 102 (222)
++.......++ -|||+|-|+|..-.++.+.+ |+..++++|-.-.. ... .-.+.-.++.+|+.+. +.
T Consensus 32 ~a~~~v~~~~G-pVlElGLGNGRTydHLRe~~-P~R~I~vfDR~~~~------hp~----~~P~~e~~ilGdi~~tL~~~ 99 (174)
T 3iht_A 32 HAIAQTAGLSG-PVYELGLGNGRTYHHLRQHV-QGREIYVFERAVAS------HPD----STPPEAQLILGDIRETLPAT 99 (174)
T ss_dssp HHHHHTTTCCS-CEEEECCTTCHHHHHHHHHC-CSSCEEEEESSCCC------CGG----GCCCGGGEEESCHHHHHHHH
T ss_pred HHHHHhcCCCC-ceEEecCCCChhHHHHHHhC-CCCcEEEEEeeecc------CCC----CCCchHheecccHHHHHHHH
Confidence 33333443333 69999999999999999997 67899999953211 111 1113446788888763 21
Q ss_pred ---CCCceeEEEEcccccCccc----HHHHHHHHhcccCCCcEEEEE
Q 027517 103 ---SDCFFDAITMGYGLRNVVD----KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 103 ---~~~~~D~v~~~~~l~~~~~----~~~~l~~~~~~l~~gG~l~i~ 142 (222)
-..+.-++-+-..-++-.. ...+-.-+..+|.|||.++-.
T Consensus 100 ~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~ 146 (174)
T 3iht_A 100 LERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSS 146 (174)
T ss_dssp HHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred HHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 1233444444333333321 122233456689999998653
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.19 Score=38.57 Aligned_cols=92 Identities=12% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCCeEEEec-CCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC--CCC-c-CCCCCce
Q 027517 34 TGDNVLDVC-CGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD--ALD-L-PFSDCFF 107 (222)
Q Consensus 34 ~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d--~~~-~-~~~~~~~ 107 (222)
++.+||-.| +|. |..+..+++.. +.+|++++.+++.++.+++.- .-.++..+ ..+ + ....+.+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~lG---------a~~vi~~~~~~~~~~~~~~~~g~ 218 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKKMG---------ADIVLNHKESLLNQFKTQGIELV 218 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHHHT---------CSEEECTTSCHHHHHHHHTCCCE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhcC---------CcEEEECCccHHHHHHHhCCCCc
Confidence 788999994 554 77778888874 569999999998888877642 11222111 100 0 1123469
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
|+|+-+.. -...++...+.|+++|+++..
T Consensus 219 Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 219 DYVFCTFN------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEEEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred cEEEECCC------chHHHHHHHHHhccCCEEEEE
Confidence 99986432 245667888899999998654
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.11 Score=39.58 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=52.5
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEEEc
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITMG 113 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 113 (222)
.+|||+-||-|.++.-+.+. +. .+.++|+++.+.+.-+.+. .-.++.+|+.++... -...|+++..
T Consensus 1 mkvidLFsG~GG~~~G~~~a---G~~~v~a~e~d~~a~~ty~~N~---------~~~~~~~DI~~i~~~~~~~~D~l~gg 68 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA---GFRIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGG 68 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT---TCEEEEEEECCTTTHHHHHHHC---------CSEEEESCGGGCCGGGSCCCSEEECC
T ss_pred CeEEEeCcCccHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHHC---------CCCcccCChhhCCHhhCCcccEEEec
Confidence 37999999999999888765 34 4679999999888877664 235678898876421 2358999976
Q ss_pred ccccCc
Q 027517 114 YGLRNV 119 (222)
Q Consensus 114 ~~l~~~ 119 (222)
.....+
T Consensus 69 pPCQ~f 74 (331)
T 3ubt_Y 69 PPSQSW 74 (331)
T ss_dssp CCGGGT
T ss_pred CCCCCc
Confidence 654444
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.27 Score=37.87 Aligned_cols=100 Identities=9% Similarity=0.037 Sum_probs=64.3
Q ss_pred HhhCCCCC--CeEEEecC--CCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--
Q 027517 28 SWSGAKTG--DNVLDVCC--GSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-- 100 (222)
Q Consensus 28 ~~~~~~~~--~~vLdiG~--G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-- 100 (222)
...+..++ .+||-.|+ |.|..+..+++.. +. +|++++.+++.++.+++.+. .-..+..+-.+.
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~~g--------~~~~~d~~~~~~~~ 221 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSELG--------FDAAINYKKDNVAE 221 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSC--------CSEEEETTTSCHHH
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHcC--------CceEEecCchHHHH
Confidence 44567788 99999997 3466677777763 56 89999999887777765321 111221111111
Q ss_pred ---CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 101 ---PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 ---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
....+.+|+++.+.. ...++...+.|+++|+++....
T Consensus 222 ~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 222 QLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp HHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEECC
Confidence 011126899987654 2567788889999999887543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.13 Score=39.76 Aligned_cols=99 Identities=17% Similarity=0.093 Sum_probs=62.7
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C
Q 027517 29 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~ 101 (222)
..+..++.+||-.|+ |.|..+..+++.. +.+++++|.+++.++.+++.- .. ..+..+-.+. .
T Consensus 157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~g--------~~-~~~~~~~~~~~~~~~~ 225 (354)
T 2j8z_A 157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEKLG--------AA-AGFNYKKEDFSEATLK 225 (354)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT--------CS-EEEETTTSCHHHHHHH
T ss_pred hcCCCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcC--------Cc-EEEecCChHHHHHHHH
Confidence 345678899999984 3466777777764 568999999998887774431 11 1222111111 0
Q ss_pred -CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.....+|+++-+..-. .+....+.|+++|+++.....
T Consensus 226 ~~~~~~~d~vi~~~G~~-------~~~~~~~~l~~~G~iv~~G~~ 263 (354)
T 2j8z_A 226 FTKGAGVNLILDCIGGS-------YWEKNVNCLALDGRWVLYGLM 263 (354)
T ss_dssp HTTTSCEEEEEESSCGG-------GHHHHHHHEEEEEEEEECCCT
T ss_pred HhcCCCceEEEECCCch-------HHHHHHHhccCCCEEEEEecc
Confidence 1224699998765421 356677889999998876543
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.16 Score=39.05 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=62.7
Q ss_pred HhhCCCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----
Q 027517 28 SWSGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 101 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (222)
+.....++.+||-+|+ | .|..+..+++.. +.+|+++ .+++.++.+++.- ...+. +-.++.
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~lG----------a~~i~-~~~~~~~~~~ 209 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRDLG----------ATPID-ASREPEDYAA 209 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHHHT----------SEEEE-TTSCHHHHHH
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHHcC----------CCEec-cCCCHHHHHH
Confidence 4456778999999994 4 377788888874 5689999 7888777776531 11122 222211
Q ss_pred --CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 102 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.....+|+|+-+.. ...+....+.|+++|+++...
T Consensus 210 ~~~~~~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 210 EHTAGQGFDLVYDTLG-------GPVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp HHHTTSCEEEEEESSC-------THHHHHHHHHEEEEEEEEESC
T ss_pred HHhcCCCceEEEECCC-------cHHHHHHHHHHhcCCeEEEEc
Confidence 12246999986543 135677788999999988754
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.023 Score=44.43 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=56.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
++.+|+=+|+|. |......++.+ +.+|+++|.+++.++.+++... ..+.....+..++...-...|+|+.
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~g-------~~~~~~~~~~~~l~~~l~~aDvVi~ 237 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEFC-------GRIHTRYSSAYELEGAVKRADLVIG 237 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTT-------TSSEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhcC-------CeeEeccCCHHHHHHHHcCCCEEEE
Confidence 567999999975 55555666654 5589999999988777665321 1222211111111100124799987
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+........+..+.+...+.+||||.++.+.
T Consensus 238 ~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 238 AVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 4322211111112345667889999886543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.49 Score=30.87 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=44.9
Q ss_pred CCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~ 109 (222)
..+|+-+|+|. ....+++.+. .+.+|+++|.+++.++.+++. .+.++.+|..+.. ..-..+|+
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~----------~~~~~~gd~~~~~~l~~~~~~~~d~ 73 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLEDE----------GFDAVIADPTDESFYRSLDLEGVSA 73 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT----------TCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC----------CCcEEECCCCCHHHHHhCCcccCCE
Confidence 45799999854 4444443331 356899999999877766542 4567788887632 12245898
Q ss_pred EEEccc
Q 027517 110 ITMGYG 115 (222)
Q Consensus 110 v~~~~~ 115 (222)
|+....
T Consensus 74 vi~~~~ 79 (141)
T 3llv_A 74 VLITGS 79 (141)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 887544
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.5 Score=36.70 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=58.6
Q ss_pred CCCCCeEEEec-CC-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCc
Q 027517 32 AKTGDNVLDVC-CG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCF 106 (222)
Q Consensus 32 ~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~ 106 (222)
..++.+||-.| +| .|..+..+++.. +.+|++++ +++..+.+++. + .-.++..+-.++. .....
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~--Ga~Vi~~~-~~~~~~~~~~l----G-----a~~v~~~~~~~~~~~~~~~~g 248 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW--DAHVTAVC-SQDASELVRKL----G-----ADDVIDYKSGSVEEQLKSLKP 248 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHHHT----T-----CSEEEETTSSCHHHHHHTSCC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEe-ChHHHHHHHHc----C-----CCEEEECCchHHHHHHhhcCC
Confidence 67889999999 44 377788888875 56899988 67666666433 1 1122221111110 01135
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|+|+-+..- ....+....+.++++|+++...
T Consensus 249 ~D~vid~~g~-----~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 249 FDFILDNVGG-----STETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp BSEEEESSCT-----THHHHGGGGBCSSSCCEEEESC
T ss_pred CCEEEECCCC-----hhhhhHHHHHhhcCCcEEEEeC
Confidence 8998864432 1234567788999999987653
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.029 Score=43.16 Aligned_cols=97 Identities=20% Similarity=0.222 Sum_probs=63.0
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----
Q 027517 29 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----- 101 (222)
..+. ++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++. .. .++..+-.++.
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~l-a~---------~v~~~~~~~~~~~~~~ 226 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARPY-AD---------RLVNPLEEDLLEVVRR 226 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTTT-CS---------EEECTTTSCHHHHHHH
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-HH---------hccCcCccCHHHHHHH
Confidence 4456 889999999864 67777888774 56 899999998877766553 21 11111111110
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
...+.+|+|+-...- ...++...+.|+++|+++....
T Consensus 227 ~~~~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 227 VTGSGVEVLLEFSGN------EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp HHSSCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred hcCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence 012358999865431 3457778889999999887644
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.029 Score=43.75 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=33.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhc
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 77 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (222)
++.+|+=+|+|. |..+..+++.+ +.+|+++|.+++.++.+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 567999999996 66667777776 5689999999988777765
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.31 Score=38.51 Aligned_cols=94 Identities=17% Similarity=0.126 Sum_probs=60.0
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeE
Q 027517 35 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~ 109 (222)
..+|+-+|+|. |......+.. .+..|+++|.+++.++.++.. .+.++.+|..+.. ..-...|+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~--~g~~vvvId~d~~~v~~~~~~----------g~~vi~GDat~~~~L~~agi~~A~~ 71 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLS--SGVKMVVLDHDPDHIETLRKF----------GMKVFYGDATRMDLLESAGAAKAEV 71 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEECCHHHHHHHHHT----------TCCCEESCTTCHHHHHHTTTTTCSE
T ss_pred CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHhC----------CCeEEEcCCCCHHHHHhcCCCccCE
Confidence 45789999865 4444444433 356899999999998887643 5677889988742 22346788
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|++...- +.....+....+.+.|+..++...
T Consensus 72 viv~~~~---~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 72 LINAIDD---PQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp EEECCSS---HHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEECCCC---hHHHHHHHHHHHHhCCCCeEEEEE
Confidence 8874421 222344555566677877776543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.41 Score=32.91 Aligned_cols=93 Identities=13% Similarity=0.142 Sum_probs=52.2
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCC-CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----C-CCCce
Q 027517 35 GDNVLDVCCGS-GDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----F-SDCFF 107 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~-~~~~~ 107 (222)
+.+|+=+|+|. |......+.. . +.+|+++|.+++..+.+++. .+..+.+|..+.. . .-..+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~--~~g~~V~vid~~~~~~~~~~~~----------g~~~~~gd~~~~~~l~~~~~~~~a 106 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRA--RYGKISLGIEIREEAAQQHRSE----------GRNVISGDATDPDFWERILDTGHV 106 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHH--HHCSCEEEEESCHHHHHHHHHT----------TCCEEECCTTCHHHHHTBCSCCCC
T ss_pred CCcEEEECCCHHHHHHHHHHHh--ccCCeEEEEECCHHHHHHHHHC----------CCCEEEcCCCCHHHHHhccCCCCC
Confidence 45899998764 3333333322 2 46899999999877665432 4556667765421 1 12458
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
|+|+....- ......+....+.+.|++.++..
T Consensus 107 d~vi~~~~~---~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 107 KLVLLAMPH---HQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp CEEEECCSS---HHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CEEEEeCCC---hHHHHHHHHHHHHHCCCCEEEEE
Confidence 988874321 11122223344455666676653
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.029 Score=43.57 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=56.5
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 35 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
+.+|+=+|+|. |......++.. +.+|+++|.+++.++.+++... ..+.....+..++...-..+|+|+..
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~DvVI~~ 237 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG-------SRVELLYSNSAEIETAVAEADLLIGA 237 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-------GGSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhC-------ceeEeeeCCHHHHHHHHcCCCEEEEC
Confidence 47999999965 55555666664 4589999999988777765432 12222222211111001247999865
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
-.....+.+..+.+...+.++|||.++...
T Consensus 238 ~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 238 VLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp CCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 544321111111344567789999876543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.036 Score=43.14 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=54.8
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
++.+|+=+|+|. |..+...++.. +.+|+++|.+++.++.+.+... ..+.....+..++...-..+|+|+.
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~g-------~~~~~~~~~~~~l~~~~~~~DvVi~ 235 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVFG-------GRVITLTATEANIKKSVQHADLLIG 235 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTT-------TSEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhcC-------ceEEEecCCHHHHHHHHhCCCEEEE
Confidence 357999999864 44455555553 5699999999987766654321 1222222221111100125799987
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+........+..+.+...+.+++||.++.+.
T Consensus 236 ~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 236 AVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp CCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred CCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 5543321111112456677889999876543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.34 Score=36.84 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=61.8
Q ss_pred CCCCCC-eEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CC--CCCc-CCC
Q 027517 31 GAKTGD-NVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GD--ALDL-PFS 103 (222)
Q Consensus 31 ~~~~~~-~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d--~~~~-~~~ 103 (222)
+..++. +||-.|+ | .|..+..+++.. +.++++++.+++.++.+++.-. . .++. .+ .... ...
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~lGa--------~-~v~~~~~~~~~~~~~~~ 214 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQLGA--------S-EVISREDVYDGTLKALS 214 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHHHTC--------S-EEEEHHHHCSSCCCSSC
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCC--------c-EEEECCCchHHHHHHhh
Confidence 456664 8999997 4 477778888875 4689999998887777765311 1 1111 11 1111 112
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.+.+|+|+-+.. . ..+....+.++++|+++.....
T Consensus 215 ~~~~d~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G~~ 249 (330)
T 1tt7_A 215 KQQWQGAVDPVG-----G--KQLASLLSKIQYGGSVAVSGLT 249 (330)
T ss_dssp CCCEEEEEESCC-----T--HHHHHHHTTEEEEEEEEECCCS
T ss_pred cCCccEEEECCc-----H--HHHHHHHHhhcCCCEEEEEecC
Confidence 346899886543 1 2577888999999999876443
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.041 Score=43.22 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=33.8
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhc
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 77 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (222)
++.+|+=+|+|. |..+..+++.+ +.+|+++|.++..++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 567999999996 66667777765 5699999999988877765
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.45 E-value=0.09 Score=39.57 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=59.9
Q ss_pred CCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC-CCcCCCCCcee
Q 027517 32 AKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLPFSDCFFD 108 (222)
Q Consensus 32 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D 108 (222)
..++.+||-.|+ | .|..+..+++.. +.++++++.+++.++.+++.- .-..+..+- .++...-+.+|
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~g---------a~~~~~~~~~~~~~~~~~~~d 191 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLALG---------AEEAATYAEVPERAKAWGGLD 191 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHHTT---------CSEEEEGGGHHHHHHHTTSEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhcC---------CCEEEECCcchhHHHHhcCce
Confidence 678899999997 3 477778888774 569999999888777765431 111221111 11100004689
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+|+- ..- ..++...+.++++|+++....
T Consensus 192 ~vid-~g~-------~~~~~~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 192 LVLE-VRG-------KEVEESLGLLAHGGRLVYIGA 219 (302)
T ss_dssp EEEE-CSC-------TTHHHHHTTEEEEEEEEEC--
T ss_pred EEEE-CCH-------HHHHHHHHhhccCCEEEEEeC
Confidence 9987 432 246778889999999877543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=93.35 E-value=0.39 Score=38.26 Aligned_cols=98 Identities=14% Similarity=0.030 Sum_probs=62.9
Q ss_pred hCCCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe--CCCC-------
Q 027517 30 SGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE--GDAL------- 98 (222)
Q Consensus 30 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~d~~------- 98 (222)
....++.+||-.|+ | .|..+..+++.. +.++++++.+++.++.+++.-. ...+.. .|..
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~~lGa--------~~~i~~~~~~~~~~~~~~~ 285 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVRALGC--------DLVINRAELGITDDIADDP 285 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTC--------CCEEEHHHHTCCTTGGGCH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhcCC--------CEEEecccccccccccccc
Confidence 45678999999997 4 377778888774 6689999999988887765311 111111 1110
Q ss_pred ------------Cc-CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 99 ------------DL-PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 99 ------------~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+ ......+|+|+-+..- ..++...+.++++|+++....
T Consensus 286 ~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 286 RRVVETGRKLAKLVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEESCC
T ss_pred cccchhhhHHHHHHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEEec
Confidence 00 0012458999865432 356777789999999987643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.03 E-value=0.082 Score=40.35 Aligned_cols=57 Identities=18% Similarity=0.005 Sum_probs=42.3
Q ss_pred CCeeEEeCCCCC-cC-CCCCceeEEEEcccccCc--------------ccHHHHHHHHhcccCCCcEEEEEec
Q 027517 88 KNIEWVEGDALD-LP-FSDCFFDAITMGYGLRNV--------------VDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 88 ~~i~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~--------------~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+..++++|..+ +. ++++++|+|++.-....- ......+++++++|+|||.+++..-
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 467888999765 33 456789999997665432 1356788999999999999988643
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.88 E-value=0.38 Score=36.51 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=60.5
Q ss_pred hCCCCCC-eEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCC-CC-c-CC
Q 027517 30 SGAKTGD-NVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDA-LD-L-PF 102 (222)
Q Consensus 30 ~~~~~~~-~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~-~~-~-~~ 102 (222)
....++. +||-.|+ | .|..+..+++.. +.++++++.+++.++.+++.-. . .++. .+. .+ . ..
T Consensus 144 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~lGa--------~-~~i~~~~~~~~~~~~~ 212 (328)
T 1xa0_A 144 HGLTPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVLGA--------K-EVLAREDVMAERIRPL 212 (328)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHTTC--------S-EEEECC---------C
T ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC--------c-EEEecCCcHHHHHHHh
Confidence 3456664 8999997 3 477788888875 5689999999888877765311 1 1111 111 01 1 11
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..+.+|+|+-+..- ..+....+.++++|+++....
T Consensus 213 ~~~~~d~vid~~g~-------~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 213 DKQRWAAAVDPVGG-------RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp CSCCEEEEEECSTT-------TTHHHHHHTEEEEEEEEECSC
T ss_pred cCCcccEEEECCcH-------HHHHHHHHhhccCCEEEEEee
Confidence 22469998865432 135667788999999887643
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.84 Score=30.37 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=51.3
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCce
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFF 107 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~ 107 (222)
.++.+|+=+|+|. |......+.. .+.+|+++|.+++.++.++.. .....+.+|..+.. ..-..+
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~~~~~~~~~~---------~g~~~~~~d~~~~~~l~~~~~~~a 85 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNEYAFHRLNSE---------FSGFTVVGDAAEFETLKECGMEKA 85 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCGGGGGGSCTT---------CCSEEEESCTTSHHHHHTTTGGGC
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHhc---------CCCcEEEecCCCHHHHHHcCcccC
Confidence 4567999999865 4443333333 256899999988765443311 23455666654321 112358
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
|+|+....- +.....+..+.+.+.+...++.
T Consensus 86 d~Vi~~~~~---~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 86 DMVFAFTND---DSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp SEEEECSSC---HHHHHHHHHHHHHTSCCSEEEE
T ss_pred CEEEEEeCC---cHHHHHHHHHHHHHCCCCeEEE
Confidence 988875431 1223333344444455555544
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=1.1 Score=33.99 Aligned_cols=90 Identities=22% Similarity=0.211 Sum_probs=54.9
Q ss_pred CCeEEEecCCC-Chh-HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCCCCCceeEEE
Q 027517 35 GDNVLDVCCGS-GDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSDCFFDAIT 111 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~v~ 111 (222)
..+|.-||+|. |.. +..+.+. +...+|+++|.+++.++.+.+.- .+.....|..+ . -...|+|+
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~~~~~~a~~~G---------~~~~~~~~~~~~~---~~~aDvVi 99 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDLG---------IIDEGTTSIAKVE---DFSPDFVM 99 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHTT---------SCSEEESCTTGGG---GGCCSEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHCC---------CcchhcCCHHHHh---hccCCEEE
Confidence 36899999886 333 3444433 22228999999998887765431 11122233333 1 13479999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
..-... ....+++++...++++..++
T Consensus 100 lavp~~---~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 100 LSSPVR---TFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp ECSCGG---GHHHHHHHHHHHSCTTCEEE
T ss_pred EeCCHH---HHHHHHHHHhhccCCCcEEE
Confidence 865433 34667888888898886543
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.093 Score=41.10 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=32.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhc
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 77 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (222)
++.+|+=+|+|. |..+..+++.+ +.+|+++|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 578999999986 66666777765 4589999999877766654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.35 E-value=2.5 Score=31.06 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=50.3
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 36 DNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
++||=.|| |....++++.+ ..+.+|++++-++........ .+++++.+|+.++. -..+|+|+.+.
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~----------~~~~~~~~D~~d~~--~~~~d~vi~~a 71 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA----------SGAEPLLWPGEEPS--LDGVTHLLIST 71 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH----------TTEEEEESSSSCCC--CTTCCEEEECC
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh----------CCCeEEEecccccc--cCCCCEEEECC
Confidence 58999994 88887777665 235689999988765433221 37899999998866 45689999877
Q ss_pred cccCc
Q 027517 115 GLRNV 119 (222)
Q Consensus 115 ~l~~~ 119 (222)
.....
T Consensus 72 ~~~~~ 76 (286)
T 3ius_A 72 APDSG 76 (286)
T ss_dssp CCBTT
T ss_pred Ccccc
Confidence 65544
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=91.89 E-value=0.3 Score=39.38 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=53.1
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC------------
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF------------ 102 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------------ 102 (222)
.+++|+-||.|.++.-+.+. +. .+.++|+++.+.+.-+.+.... +...++..|+.++..
T Consensus 89 ~~viDLFaG~GGlslG~~~a---G~~~v~avE~d~~A~~ty~~N~~~~-----p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESI---GGQCVFTSEWNKHAVRTYKANHYCD-----PATHHFNEDIRDITLSHQEGVSDEAAA 160 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTT---TEEEEEEECCCHHHHHHHHHHSCCC-----TTTCEEESCTHHHHCTTCTTSCHHHHH
T ss_pred ceEEEecCCccHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHhcccC-----CCcceeccchhhhhhccccccchhhHH
Confidence 58999999999999988754 44 4789999998887766654211 244567788776431
Q ss_pred -----CCCceeEEEEcccccCc
Q 027517 103 -----SDCFFDAITMGYGLRNV 119 (222)
Q Consensus 103 -----~~~~~D~v~~~~~l~~~ 119 (222)
....+|+++.......+
T Consensus 161 ~~i~~~~~~~Dvl~gGpPCQ~F 182 (482)
T 3me5_A 161 EHIRQHIPEHDVLLAGFPCQPF 182 (482)
T ss_dssp HHHHHHSCCCSEEEEECCCCCC
T ss_pred hhhhhcCCCCCEEEecCCCcch
Confidence 11358999976665554
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=0.077 Score=41.83 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=32.4
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhc
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 77 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (222)
++.+|+=+|+|. |..+..+++.+ +.+|+++|.++..++.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~v~D~~~~~~~~~~~ 213 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS 213 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCGGGHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 467999999986 66666777765 4689999999987776643
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.55 Score=38.02 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=56.9
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 32 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 32 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
..++++|+-+|+|. |......++.+ +.+|+++|.++...+.+.+. .+.. .++.+. -...|+|
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~~----------Ga~~--~~l~e~---l~~aDvV 333 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMME----------GFDV--VTVEEA---IGDADIV 333 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT----------TCEE--CCHHHH---GGGCSEE
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----------CCEE--ecHHHH---HhCCCEE
Confidence 45788999999986 65666666664 56999999999877665533 1221 222222 1357999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+..-.-.++-+ ....+.+|+||+++.+..
T Consensus 334 i~atgt~~~i~-----~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 334 VTATGNKDIIM-----LEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp EECSSSSCSBC-----HHHHHHSCTTCEEEECSS
T ss_pred EECCCCHHHHH-----HHHHHhcCCCcEEEEeCC
Confidence 87543333222 234556899999876544
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=91.56 E-value=1 Score=32.84 Aligned_cols=102 Identities=9% Similarity=0.132 Sum_probs=63.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC----------
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---------- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---------- 102 (222)
.++++|=-|++. .....+++.+ ..+.+|+.++.+++.++...+.. + .++.++..|+.+...
T Consensus 7 ~gk~~lVTGas~-gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (255)
T 4eso_A 7 QGKKAIVIGGTH-GMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G----PRVHALRSDIADLNEIAVLGAAAGQ 78 (255)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G----GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----CcceEEEccCCCHHHHHHHHHHHHH
Confidence 466788888654 4444443332 23668999999988776655443 1 468889999887420
Q ss_pred CCCceeEEEEcccccCcc--------c-----------HHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVV--------D-----------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~--------~-----------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..+..|+++.+....... + .-.+.+.+...++++|.++.+.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 79 TLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp HHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 013689999876654321 1 1234566677777788877654
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=91.43 E-value=2.1 Score=31.49 Aligned_cols=70 Identities=9% Similarity=-0.077 Sum_probs=43.8
Q ss_pred eEEEecCCCChhHHHHHHHhC--CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCceeEEE
Q 027517 37 NVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAIT 111 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~ 111 (222)
+||=.| |+|.....+++.+. ++.+|.+++-+++..... . ..+++++.+|+.+.. ..-+.+|.|+
T Consensus 2 ~ilVtG-atG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-------~---~~~v~~~~~D~~d~~~l~~~~~~~d~vi 70 (289)
T 3e48_A 2 NIMLTG-ATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-------W---RGKVSVRQLDYFNQESMVEAFKGMDTVV 70 (289)
T ss_dssp CEEEET-TTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-------G---BTTBEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred EEEEEc-CCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-------h---hCCCEEEEcCCCCHHHHHHHHhCCCEEE
Confidence 467666 56766666665543 266899998876532111 1 147899999998732 1113579999
Q ss_pred Eccccc
Q 027517 112 MGYGLR 117 (222)
Q Consensus 112 ~~~~l~ 117 (222)
.+....
T Consensus 71 ~~a~~~ 76 (289)
T 3e48_A 71 FIPSII 76 (289)
T ss_dssp ECCCCC
T ss_pred EeCCCC
Confidence 776544
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.91 E-value=2.1 Score=27.44 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=50.5
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~ 109 (222)
+.+|+=+|+| .....+++.+ ..+.+++++|.+++..+...+. ..+.++.+|..+.. ..-..+|+
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---------~~~~~~~~d~~~~~~l~~~~~~~~d~ 72 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADM 72 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---------cCcEEEEcCCCCHHHHHHcCcccCCE
Confidence 4578888875 4444443332 1356899999988776654432 14456666665421 11245899
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
|+....- +.....+..+.+.+.++ .+++
T Consensus 73 vi~~~~~---~~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 73 YIAVTGK---EEVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp EEECCSC---HHHHHHHHHHHHHTTCC-CEEE
T ss_pred EEEeeCC---chHHHHHHHHHHHcCCC-EEEE
Confidence 8876432 12233344455556665 4443
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=3.4 Score=29.04 Aligned_cols=95 Identities=7% Similarity=0.003 Sum_probs=53.1
Q ss_pred eEEEecCCCChhHHHHHHHhC--CCCcEEEEeCChh-HHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---CCCceeEE
Q 027517 37 NVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKN-QLSMASSRQDLVSKACYKNIEWVEGDALDLPF---SDCFFDAI 110 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~--~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v 110 (222)
+||=.| |+|.....+++.+. .+.+|++++-+++ .++..... ..++.++.+|+.+... .-+..|+|
T Consensus 7 ~vlVtG-asg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~~~d~v 77 (221)
T 3r6d_A 7 YITILG-AAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIID--------HERVTVIEGSFQNPGXLEQAVTNAEVV 77 (221)
T ss_dssp EEEEES-TTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHT--------STTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred EEEEEe-CCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccC--------CCceEEEECCCCCHHHHHHHHcCCCEE
Confidence 478777 45555555554432 4678999998876 33222101 1578999999986320 01357999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+.+.....+. ...+++.+.+ ...|+++.+.
T Consensus 78 v~~ag~~n~~-~~~~~~~~~~--~~~~~iv~iS 107 (221)
T 3r6d_A 78 FVGAMESGSD-MASIVKALSR--XNIRRVIGVS 107 (221)
T ss_dssp EESCCCCHHH-HHHHHHHHHH--TTCCEEEEEE
T ss_pred EEcCCCCChh-HHHHHHHHHh--cCCCeEEEEe
Confidence 9877654332 3333333332 1234665543
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=1.7 Score=33.63 Aligned_cols=93 Identities=14% Similarity=0.065 Sum_probs=59.2
Q ss_pred CCCCeEEEecCC--CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----CCCCC
Q 027517 33 KTGDNVLDVCCG--SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----PFSDC 105 (222)
Q Consensus 33 ~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~ 105 (222)
.++.+||-+|++ .|..+..+++.. +.+++++. +++-++.+++.- .-.++...-.++ ....+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~--Ga~Vi~~~-~~~~~~~~~~lG---------a~~vi~~~~~~~~~~v~~~t~g 230 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS--GYIPIATC-SPHNFDLAKSRG---------AEEVFDYRAPNLAQTIRTYTKN 230 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHHHTT---------CSEEEETTSTTHHHHHHHHTTT
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe-CHHHHHHHHHcC---------CcEEEECCCchHHHHHHHHccC
Confidence 678899999984 588888888875 56888875 787777776541 122332221221 11123
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhccc-CCCcEEEEEe
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVL-KPGSRISVLD 143 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l-~~gG~l~i~~ 143 (222)
.+|+|+-+-.- ...++...+.| +++|+++...
T Consensus 231 ~~d~v~d~~g~------~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 231 NLRYALDCITN------VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp CCCEEEESSCS------HHHHHHHHHHSCTTCEEEEESS
T ss_pred CccEEEECCCc------hHHHHHHHHHhhcCCCEEEEEe
Confidence 48998854321 34566677778 6999988754
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=90.38 E-value=0.87 Score=34.91 Aligned_cols=91 Identities=9% Similarity=-0.047 Sum_probs=56.0
Q ss_pred CeEEEe-cCC-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC------CCCCce
Q 027517 36 DNVLDV-CCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------FSDCFF 107 (222)
Q Consensus 36 ~~vLdi-G~G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~ 107 (222)
.+||-. |+| .|..+..+++.. +.+|++++.+++-++.+++.- .-.++..+-.++. .....+
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~~G---------a~~~~~~~~~~~~~~v~~~~~~~g~ 234 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKDIG---------AAHVLNEKAPDFEATLREVMKAEQP 234 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHHHT---------CSEEEETTSTTHHHHHHHHHHHHCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcC---------CCEEEECCcHHHHHHHHHHhcCCCC
Confidence 566654 444 366777778775 569999999998888876531 1122322212211 011358
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
|+|+-+..- ..+....+.|+++|+++....
T Consensus 235 D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 264 (349)
T 3pi7_A 235 RIFLDAVTG-------PLASAIFNAMPKRARWIIYGR 264 (349)
T ss_dssp CEEEESSCH-------HHHHHHHHHSCTTCEEEECCC
T ss_pred cEEEECCCC-------hhHHHHHhhhcCCCEEEEEec
Confidence 999865432 234667789999999988653
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.32 E-value=2.4 Score=31.21 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=62.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCC------------hhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFS------------KNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~------------~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.++++|=-|++.| ....+++.+ ..+.+|+.+|.+ .+.++.........+ .++.++..|+.+.
T Consensus 9 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~ 83 (287)
T 3pxx_A 9 QDKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG----RKAYTAEVDVRDR 83 (287)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT----SCEEEEECCTTCH
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC----CceEEEEccCCCH
Confidence 3567888886544 443333332 236689999986 444544444333222 5788999999874
Q ss_pred CC----------CCCceeEEEEcccccCc------cc-----------HHHHHHHHhcccCCCcEEEEEe
Q 027517 101 PF----------SDCFFDAITMGYGLRNV------VD-----------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ~~----------~~~~~D~v~~~~~l~~~------~~-----------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.. ..+..|+++.+...... .+ ...+++.+...++.+|.++.+.
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 84 AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 20 01358999987665332 11 1234566777778888877653
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=90.06 E-value=3.6 Score=30.62 Aligned_cols=106 Identities=9% Similarity=0.087 Sum_probs=62.1
Q ss_pred CCCeEEEecCCCC-hhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C----
Q 027517 34 TGDNVLDVCCGSG-DLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F---- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G-~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~---- 102 (222)
.++++|=.|++.| .....+++.+ ..+.+|+.++.++...+..++..... .++.++..|+.+.. +
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~ 104 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL-----GAFVAGHCDVADAASIDAVFETLE 104 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH-----TCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-----CCceEEECCCCCHHHHHHHHHHHH
Confidence 4668888887643 2333332222 23568999998865544444333222 36788899988732 0
Q ss_pred -CCCceeEEEEcccccC-------c---c--c-----------HHHHHHHHhcccCCCcEEEEEec
Q 027517 103 -SDCFFDAITMGYGLRN-------V---V--D-----------KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 -~~~~~D~v~~~~~l~~-------~---~--~-----------~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..+..|+++.+..... + + + ...+.+.+.+.++.+|.++.+..
T Consensus 105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 105 KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 1136899998776543 1 0 1 12345666677777888877643
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=90.03 E-value=0.48 Score=35.16 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=55.8
Q ss_pred CCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE-eCCCCCcCCCCCceeEEEEccc----cc
Q 027517 43 CGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV-EGDALDLPFSDCFFDAITMGYG----LR 117 (222)
Q Consensus 43 ~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~d~~~~~~~~~~~D~v~~~~~----l~ 117 (222)
++.|.....+.+. ++..+..+|. -+....++.....+ .+...++ ..|+...+. .+++|+|++... -|
T Consensus 150 ~~~~~~~~~~~k~--~g~~vl~v~~---~~~~p~k~v~wi~P--i~GAt~~~~lDfg~p~~-~~k~DvV~SDMApn~sGh 221 (320)
T 2hwk_A 150 HPQSDFSSFVSKL--KGRTVLVVGE---KLSVPGKMVDWLSD--RPEATFRARLDLGIPGD-VPKYDIIFVNVRTPYKYH 221 (320)
T ss_dssp CCCCCCHHHHHTS--SCSEEEEEES---CCCCTTSEEEEEES--STTCSEECCGGGCSCTT-SCCEEEEEEECCCCCCSC
T ss_pred cCCCCHHHHHhhC--CCcEEEEEec---ccccCCceeEeecc--CCCceeecccccCCccc-cCcCCEEEEcCCCCCCCc
Confidence 5556666655554 5667777753 12222333322221 1344454 566655332 267999998554 34
Q ss_pred Ccc---cH----HHHHHHHhcccCCCcEEEEEecCCC
Q 027517 118 NVV---DK----RKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 118 ~~~---~~----~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
|.. |. .-+++....+|+|||.+++-.+...
T Consensus 222 ~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygga 258 (320)
T 2hwk_A 222 HYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYA 258 (320)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCC
T ss_pred cccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 422 22 2256777889999999998777654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=89.99 E-value=0.91 Score=33.10 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=62.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC--CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-----C---
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-----S--- 103 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~--- 103 (222)
.+++||-.| |+|.....+++.+. .+.+|+.++.+++..+...+.+...+ .++.++..|+.+... .
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG----LSPRFHQLDIDDLQSIRALRDFLR 77 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC----CeeEEEECCCCCHHHHHHHHHHHH
Confidence 356777666 55666666655442 35689999988776655544443221 478889999887420 0
Q ss_pred --CCceeEEEEcccccCc--------cc-----------HHHHHHHHhcccCCCcEEEEE
Q 027517 104 --DCFFDAITMGYGLRNV--------VD-----------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 104 --~~~~D~v~~~~~l~~~--------~~-----------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.+..|+|+.+...... .+ ...+++.+.+.++++|+++.+
T Consensus 78 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~ 137 (276)
T 1wma_A 78 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 137 (276)
T ss_dssp HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence 1268999976654321 11 123456666777667777665
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=89.99 E-value=2.9 Score=30.40 Aligned_cols=108 Identities=8% Similarity=0.113 Sum_probs=63.0
Q ss_pred CCCeEEEecCCCC-hhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---------
Q 027517 34 TGDNVLDVCCGSG-DLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF--------- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G-~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------- 102 (222)
.++++|=.|++.+ .....+++.+ ..+.+|+.++.++...+...+.....+. .++.++..|+.+...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR---NDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS---CCCEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC---CCceEEeCCCCCHHHHHHHHHHHH
Confidence 3567888886622 2332222222 2366899998877655554444332221 368899999987420
Q ss_pred -CCCceeEEEEcccccC-------cc--c---H-----------HHHHHHHhcccCCCcEEEEEec
Q 027517 103 -SDCFFDAITMGYGLRN-------VV--D---K-----------RKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 -~~~~~D~v~~~~~l~~-------~~--~---~-----------~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..+..|+++.+..... +. + . ..+++.+...++++|.++.+..
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 0135799987766543 11 1 1 1356677778888888877653
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=0.98 Score=39.87 Aligned_cols=74 Identities=14% Similarity=0.047 Sum_probs=51.4
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCC--cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc------------
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQG--KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------------ 100 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------------ 100 (222)
..+++|+-||.|.++.-+.+. +. .+.++|+++.+.+.-+.+. +...++..|+.++
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A---G~~~vv~avEid~~A~~ty~~N~--------p~~~~~~~DI~~l~~~~~~~di~~~ 608 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA---GISDTLWAIEMWDPAAQAFRLNN--------PGSTVFTEDCNILLKLVMAGETTNS 608 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH---TSEEEEEEECSSHHHHHHHHHHC--------TTSEEECSCHHHHHHHHHHTCSBCT
T ss_pred CCeEEEeccCccHHHHHHHHC---CCCceEEEEECCHHHHHHHHHhC--------CCCccccccHHHHhhhccchhhhhh
Confidence 448999999999999988766 43 4789999999988776664 3555665554221
Q ss_pred ---CCC-CCceeEEEEcccccCc
Q 027517 101 ---PFS-DCFFDAITMGYGLRNV 119 (222)
Q Consensus 101 ---~~~-~~~~D~v~~~~~l~~~ 119 (222)
..+ .+.+|+|+.......+
T Consensus 609 ~~~~lp~~~~vDll~GGpPCQ~F 631 (1002)
T 3swr_A 609 RGQRLPQKGDVEMLCGGPPCQGF 631 (1002)
T ss_dssp TCCBCCCTTTCSEEEECCCCTTC
T ss_pred hhhhcccCCCeeEEEEcCCCcch
Confidence 111 2468999976665444
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=89.79 E-value=2.7 Score=31.70 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=51.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C-----
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~----- 102 (222)
.+++||-.|++.| ....+++.+ ..+.+|++++.+++.++...+.+...+.. .++.++..|+.+.. .
T Consensus 7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (319)
T 3ioy_A 7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSG--PEVMGVQLDVASREGFKMAADEVEA 83 (319)
T ss_dssp TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCG--GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4567888886654 444443332 24678999999998877766555432211 26888999988732 0
Q ss_pred CCCceeEEEEccccc
Q 027517 103 SDCFFDAITMGYGLR 117 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~ 117 (222)
..+..|+++.+....
T Consensus 84 ~~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 84 RFGPVSILCNNAGVN 98 (319)
T ss_dssp HTCCEEEEEECCCCC
T ss_pred hCCCCCEEEECCCcC
Confidence 113689999877654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.61 E-value=3 Score=27.48 Aligned_cols=95 Identities=13% Similarity=0.006 Sum_probs=54.0
Q ss_pred CCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCCh-hHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCcee
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSK-NQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFD 108 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D 108 (222)
..+|+=+|+ |.....+++.+. .+.+|+.+|.++ +..+...... . ..+.++.+|..+.. ..-+..|
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~---~----~~~~~i~gd~~~~~~l~~a~i~~ad 73 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---G----DNADVIPGDSNDSSVLKKAGIDRCR 73 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---C----TTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh---c----CCCeEEEcCCCCHHHHHHcChhhCC
Confidence 347888886 555555544432 356899999974 4333333221 1 35788889987632 1124578
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
+|++...- ......+....+.+.|...++.
T Consensus 74 ~vi~~~~~---d~~n~~~~~~a~~~~~~~~ii~ 103 (153)
T 1id1_A 74 AILALSDN---DADNAFVVLSAKDMSSDVKTVL 103 (153)
T ss_dssp EEEECSSC---HHHHHHHHHHHHHHTSSSCEEE
T ss_pred EEEEecCC---hHHHHHHHHHHHHHCCCCEEEE
Confidence 88875422 1233444455556666666655
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=89.60 E-value=1 Score=33.62 Aligned_cols=89 Identities=15% Similarity=-0.042 Sum_probs=52.0
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeEE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v 110 (222)
-++++|+=+|+|. |......++.+ +.+|+++|.+++..+.+.+. .+.... .++.+. -...|+|
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~----------g~~~~~~~~l~~~---l~~aDvV 217 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAAL--GAKVKVGARESDLLARIAEM----------GMEPFHISKAAQE---LRDVDVC 217 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----------TSEEEEGGGHHHH---TTTCSEE
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC----------CCeecChhhHHHH---hcCCCEE
Confidence 3578999999875 55555555554 45899999988655443321 222221 122121 1357999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+.....+.+.. . ..+.++||+.++-+
T Consensus 218 i~~~p~~~i~~--~----~l~~mk~~~~lin~ 243 (293)
T 3d4o_A 218 INTIPALVVTA--N----VLAEMPSHTFVIDL 243 (293)
T ss_dssp EECCSSCCBCH--H----HHHHSCTTCEEEEC
T ss_pred EECCChHHhCH--H----HHHhcCCCCEEEEe
Confidence 98776644332 2 33457888877544
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.37 E-value=2.3 Score=29.97 Aligned_cols=91 Identities=8% Similarity=-0.024 Sum_probs=53.6
Q ss_pred eEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeEEE
Q 027517 37 NVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAIT 111 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~ 111 (222)
+|+=+|+ |.....+++.+. .+.+++++|.+++.++...+. ..+.++.+|..+.. ..-..+|+|+
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---------~~~~~i~gd~~~~~~l~~a~i~~ad~vi 70 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---------LKATIIHGDGSHKEILRDAEVSKNDVVV 70 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---------SSSEEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---------cCCeEEEcCCCCHHHHHhcCcccCCEEE
Confidence 5777776 555555544431 356899999999877765433 25678888887632 1124578888
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
+...- +.....+....+.+.+...++.
T Consensus 71 ~~~~~---d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 71 ILTPR---DEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp ECCSC---HHHHHHHHHHHHHTSCCCEEEE
T ss_pred EecCC---cHHHHHHHHHHHHHcCCCeEEE
Confidence 74421 1223344445555555555543
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.23 E-value=1.1 Score=34.26 Aligned_cols=97 Identities=18% Similarity=0.112 Sum_probs=54.9
Q ss_pred HhhCCCCCCeEEEecCC--CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 28 SWSGAKTGDNVLDVCCG--SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
+.....++.+||-.|++ .|..+..+++.. ...+|++++ +++..+.++ . + .-.++..+ .++
T Consensus 136 ~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~-g~~~V~~~~-~~~~~~~~~-~----g-----a~~~~~~~-~~~~~~~~ 202 (349)
T 4a27_A 136 EVANLREGMSVLVHSAGGGVGQAVAQLCSTV-PNVTVFGTA-STFKHEAIK-D----S-----VTHLFDRN-ADYVQEVK 202 (349)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHTTS-TTCEEEEEE-CGGGHHHHG-G----G-----SSEEEETT-SCHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCcEEEEeC-CHHHHHHHH-c----C-----CcEEEcCC-ccHHHHHH
Confidence 44567789999999983 366667777653 245788888 555555554 1 1 11222211 111
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
....+.+|+|+-+-.-. .+....+.|+++|++++...
T Consensus 203 ~~~~~g~Dvv~d~~g~~-------~~~~~~~~l~~~G~~v~~G~ 239 (349)
T 4a27_A 203 RISAEGVDIVLDCLCGD-------NTGKGLSLLKPLGTYILYGS 239 (349)
T ss_dssp HHCTTCEEEEEEECC--------------CTTEEEEEEEEEEC-
T ss_pred HhcCCCceEEEECCCch-------hHHHHHHHhhcCCEEEEECC
Confidence 11234699999644311 23567889999999987654
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.11 E-value=3.1 Score=30.53 Aligned_cols=85 Identities=16% Similarity=0.037 Sum_probs=49.5
Q ss_pred eEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEccc
Q 027517 37 NVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 115 (222)
Q Consensus 37 ~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 115 (222)
+|.-||+|. |......+.. .+.+|+++|.+++.++.+.+. + -......|..+. ...|+|+..-.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~~~~~~~~~~~----g-----~~~~~~~~~~~~----~~~D~vi~av~ 66 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQQSTCEKAVER----Q-----LVDEAGQDLSLL----QTAKIIFLCTP 66 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHT----T-----SCSEEESCGGGG----TTCSEEEECSC
T ss_pred EEEEEcCcHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHhC----C-----CCccccCCHHHh----CCCCEEEEECC
Confidence 577888876 3333222222 245899999998877665432 1 111112333332 34799988554
Q ss_pred ccCcccHHHHHHHHhcccCCCcEE
Q 027517 116 LRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 116 l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
-. ....+++.+...++++..+
T Consensus 67 ~~---~~~~~~~~l~~~~~~~~~v 87 (279)
T 2f1k_A 67 IQ---LILPTLEKLIPHLSPTAIV 87 (279)
T ss_dssp HH---HHHHHHHHHGGGSCTTCEE
T ss_pred HH---HHHHHHHHHHhhCCCCCEE
Confidence 22 3456778888888887654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.04 E-value=4.4 Score=31.45 Aligned_cols=101 Identities=15% Similarity=0.065 Sum_probs=60.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
.+.+||.++.+.|.++..++.. .++.+.-|--.....+.+++..+... .++.+... ..+ ....+|+|+..
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~-~~~~~~~~-~~~---~~~~~~~v~~~ 107 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDE-SSVKFLDS-TAD---YPQQPGVVLIK 107 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCG-GGSEEEET-TSC---CCSSCSEEEEE
T ss_pred CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCc-cceEeccc-ccc---cccCCCEEEEE
Confidence 4568999999999999887643 33444323433334444444332210 12444322 122 23568998884
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.. -+.......|..+...|++|+.+++....
T Consensus 108 lp-k~~~~l~~~L~~l~~~l~~~~~i~~~g~~ 138 (375)
T 4dcm_A 108 VP-KTLALLEQQLRALRKVVTSDTRIIAGAKA 138 (375)
T ss_dssp CC-SCHHHHHHHHHHHHTTCCTTSEEEEEEEG
T ss_pred cC-CCHHHHHHHHHHHHhhCCCCCEEEEEecc
Confidence 43 23344567789999999999998776544
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.93 E-value=0.42 Score=31.26 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=30.6
Q ss_pred CCCCCceeEEEEccccc-C-cccHHHHHHHHhcccCCCcEEEE
Q 027517 101 PFSDCFFDAITMGYGLR-N-VVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~-~-~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
.++..+||.|+....-. . ..-+..++..+...|||||.|.-
T Consensus 54 sLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 54 TLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred cCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 45677899999755433 2 22238899999999999999964
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=88.40 E-value=5.2 Score=29.65 Aligned_cols=105 Identities=12% Similarity=0.029 Sum_probs=60.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhH-HHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C----
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQ-LSMASSRQDLVSKACYKNIEWVEGDALDLP-----F---- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~---- 102 (222)
.++++|=.|++. .....+++.+ ..+.+|+.++.+++. .+...+.....+ .++.++..|+.+.. +
T Consensus 46 ~gk~vlVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~ 120 (291)
T 3ijr_A 46 KGKNVLITGGDS-GIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG----VKCVLLPGDLSDEQHCKDIVQETV 120 (291)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT----CCEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHHHHH
Confidence 356788888654 4444444333 236689999987653 333333222222 47888999998732 0
Q ss_pred -CCCceeEEEEcccccCc----c-----c-----------HHHHHHHHhcccCCCcEEEEEe
Q 027517 103 -SDCFFDAITMGYGLRNV----V-----D-----------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 -~~~~~D~v~~~~~l~~~----~-----~-----------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..+..|+++.+...... . + ...+++.+.+.++.+|.++.+.
T Consensus 121 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 121 RQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp HHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 01358999977553321 1 1 1245667777888888877653
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=88.33 E-value=1.6 Score=32.67 Aligned_cols=90 Identities=12% Similarity=-0.040 Sum_probs=53.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeEE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v 110 (222)
-++++|+=+|+|. |......+..+ +.+|+++|.+++..+.+.+. .+.... .++.+. -...|+|
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~d~~~~~~~~~~~~----------g~~~~~~~~l~~~---l~~aDvV 219 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAAL--GANVKVGARSSAHLARITEM----------GLVPFHTDELKEH---VKDIDIC 219 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----------TCEEEEGGGHHHH---STTCSEE
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHC----------CCeEEchhhHHHH---hhCCCEE
Confidence 3578999999875 44444445553 56899999988655433221 222221 122221 1357999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+.....+.+.. ...+.+|||+.++-+-
T Consensus 220 i~~~p~~~i~~------~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 220 INTIPSMILNQ------TVLSSMTPKTLILDLA 246 (300)
T ss_dssp EECCSSCCBCH------HHHTTSCTTCEEEECS
T ss_pred EECCChhhhCH------HHHHhCCCCCEEEEEe
Confidence 98777644332 2346789988765443
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.18 E-value=2.9 Score=30.92 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=64.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 102 (222)
.++.+|--|++.| ....+++.+ ..+++|..+|.+++.++...+.+ + .+...+..|+.+.. .
T Consensus 28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g----~~~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G----GGAVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C----TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C----CCeEEEEecCCCHHHHHHHHHHHHH
Confidence 4667777776665 333333222 24679999999998887765443 2 46778888987732 0
Q ss_pred CCCceeEEEEcccccCcc---c----------------HHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVV---D----------------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~---~----------------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.-++.|+++.+....... + .-...+.+.+.|+.+|.++.+.
T Consensus 100 ~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 100 EAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp HHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 114689998776543321 1 1244667777888888876654
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=88.11 E-value=3.3 Score=30.61 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=51.8
Q ss_pred CeEEEecCCC-Chh-HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 36 DNVLDVCCGS-GDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 36 ~~vLdiG~G~-G~~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
.+|.=||+|. |.. +..+.+. +.+.+|+++|.+++..+.+.+. + .......|..+. -...|+|+..
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~~~~~~~~~~~----g-----~~~~~~~~~~~~---~~~aDvVila 73 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRD-HPHYKIVGYNRSDRSRDIALER----G-----IVDEATADFKVF---AALADVIILA 73 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CTTSEEEEECSSHHHHHHHHHT----T-----SCSEEESCTTTT---GGGCSEEEEC
T ss_pred ceEEEEeeCHHHHHHHHHHHhC-CCCcEEEEEcCCHHHHHHHHHc----C-----CcccccCCHHHh---hcCCCEEEEc
Confidence 4788999886 333 3344443 3356899999998877665432 1 111122233221 1357998885
Q ss_pred ccccCcccHHHHHHHHhcc-cCCCcEEE
Q 027517 114 YGLRNVVDKRKALEESFRV-LKPGSRIS 140 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~-l~~gG~l~ 140 (222)
-... ....+++.+... ++++..++
T Consensus 74 vp~~---~~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 74 VPIK---KTIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp SCHH---HHHHHHHHHHTSCCCTTCEEE
T ss_pred CCHH---HHHHHHHHHHhcCCCCCCEEE
Confidence 5432 235677788777 88775443
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.03 E-value=0.29 Score=36.01 Aligned_cols=54 Identities=4% Similarity=0.004 Sum_probs=36.1
Q ss_pred CeeEEeCCCCCc--CCCCCceeEEEEcccccCc--------------ccHHHHHHHHhcccCCCcEEEEE
Q 027517 89 NIEWVEGDALDL--PFSDCFFDAITMGYGLRNV--------------VDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 89 ~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~--------------~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
...++++|..+. ..+++++|+|++.-....- .-....++.++++|+|||.+++.
T Consensus 4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345677776542 1345679999886654322 12356788889999999998876
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=87.82 E-value=4.7 Score=28.58 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=46.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCe-eEEeCCCCC-cCCCCCceeEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGDALD-LPFSDCFFDAI 110 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~~~~~~~~D~v 110 (222)
.+++||=.| |+|.....+++.+ ..+.+|++++-+++..+.... .++ .++.+|+.+ +...-+..|+|
T Consensus 20 ~~~~ilVtG-atG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~D~v 88 (236)
T 3e8x_A 20 QGMRVLVVG-ANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----------RGASDIVVANLEEDFSHAFASIDAV 88 (236)
T ss_dssp -CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----------TTCSEEEECCTTSCCGGGGTTCSEE
T ss_pred CCCeEEEEC-CCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----------CCCceEEEcccHHHHHHHHcCCCEE
Confidence 467899888 4565555555443 235689999988876544322 267 888888862 11112358999
Q ss_pred EEcccccC
Q 027517 111 TMGYGLRN 118 (222)
Q Consensus 111 ~~~~~l~~ 118 (222)
+.+.....
T Consensus 89 i~~ag~~~ 96 (236)
T 3e8x_A 89 VFAAGSGP 96 (236)
T ss_dssp EECCCCCT
T ss_pred EECCCCCC
Confidence 98776554
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=87.74 E-value=3.6 Score=30.26 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=49.9
Q ss_pred eEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC-ceeEEEEcc
Q 027517 37 NVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC-FFDAITMGY 114 (222)
Q Consensus 37 ~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~D~v~~~~ 114 (222)
+|.-||+|. |......+...+...+|+++|.+++.++.+++. + -......|..+. -. ..|+|+..-
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~----g-----~~~~~~~~~~~~---~~~~aDvVilav 70 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----G-----IIDEGTTSIAKV---EDFSPDFVMLSS 70 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----T-----SCSEEESCGGGG---GGTCCSEEEECS
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC----C-----CcccccCCHHHH---hcCCCCEEEEcC
Confidence 678899886 443333333322122799999998877765532 1 111112233221 12 479998854
Q ss_pred cccCcccHHHHHHHHhcccCCCcEEE
Q 027517 115 GLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
... ....++..+...++++..++
T Consensus 71 p~~---~~~~v~~~l~~~l~~~~iv~ 93 (281)
T 2g5c_A 71 PVR---TFREIAKKLSYILSEDATVT 93 (281)
T ss_dssp CHH---HHHHHHHHHHHHSCTTCEEE
T ss_pred CHH---HHHHHHHHHHhhCCCCcEEE
Confidence 332 23466777878888887544
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=87.26 E-value=5 Score=29.85 Aligned_cols=98 Identities=7% Similarity=-0.024 Sum_probs=51.7
Q ss_pred CeEEEecCCC-ChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CCCC--CceeEE
Q 027517 36 DNVLDVCCGS-GDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSD--CFFDAI 110 (222)
Q Consensus 36 ~~vLdiG~G~-G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~--~~~D~v 110 (222)
.+|.-+|+|. |... ..+++ .+.+|+++|.+++.++..++.-..... .........+..+. .... ..+|+|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~---~g~~V~~~~r~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQ---GGNDVTLIDQWPAHIEAIRKNGLIADF--NGEEVVANLPIFSPEEIDHQNEQVDLI 78 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHCEEEEE--TTEEEEECCCEECGGGCCTTSCCCSEE
T ss_pred CeEEEECcCHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHhCCEEEEe--CCCeeEecceeecchhhcccCCCCCEE
Confidence 4788999985 3333 33332 245899999998877665543100000 00000000111111 1111 257999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
+..-.-. ....+++.+...++++..++.
T Consensus 79 i~~v~~~---~~~~v~~~l~~~l~~~~~iv~ 106 (316)
T 2ew2_A 79 IALTKAQ---QLDAMFKAIQPMITEKTYVLC 106 (316)
T ss_dssp EECSCHH---HHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEeccc---cHHHHHHHHHHhcCCCCEEEE
Confidence 8755422 346778888888888765543
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=87.24 E-value=6.4 Score=28.57 Aligned_cols=105 Identities=8% Similarity=0.022 Sum_probs=64.3
Q ss_pred CCCeEEEecCCC----Chh-HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-------
Q 027517 34 TGDNVLDVCCGS----GDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------- 101 (222)
Q Consensus 34 ~~~~vLdiG~G~----G~~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 101 (222)
.++.+|=-|+++ |.- +..|++ .+++|...+.+++.++.+.+.....+. .++.+++.|+.+..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~---~Ga~Vvi~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~ 78 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQ---LGAKLVFTYRKERSRKELEKLLEQLNQ---PEAHLYQIDVQSDEEVINGFE 78 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHGGGTC---SSCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCC---CcEEEEEccCCCHHHHHHHHH
Confidence 467888888543 332 334443 367999999998888777666544332 46888899987632
Q ss_pred ---CCCCceeEEEEcccccCc-------cc--H--------------HHHHHHHhcccCCCcEEEEEec
Q 027517 102 ---FSDCFFDAITMGYGLRNV-------VD--K--------------RKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ---~~~~~~D~v~~~~~l~~~-------~~--~--------------~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..-+..|+++.+..+... .+ . ....+.....++.+|.++.+..
T Consensus 79 ~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS 147 (256)
T 4fs3_A 79 QIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY 147 (256)
T ss_dssp HHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred HHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence 011468998877554321 11 1 1123445567788998876653
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=87.17 E-value=6.3 Score=28.01 Aligned_cols=92 Identities=9% Similarity=0.012 Sum_probs=56.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCC-CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCcee
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFD 108 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D 108 (222)
...+|+=+|+ |.....+++.+.. +. |+++|.+++.++.+. . .+.++.+|..+.. ..-...|
T Consensus 8 ~~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~----------~~~~i~gd~~~~~~l~~a~i~~ad 73 (234)
T 2aef_A 8 KSRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR-S----------GANFVHGDPTRVSDLEKANVRGAR 73 (234)
T ss_dssp --CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-T----------TCEEEESCTTCHHHHHHTTCTTCS
T ss_pred CCCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-c----------CCeEEEcCCCCHHHHHhcCcchhc
Confidence 3458998887 5777777776633 34 999999888766554 1 5678889987632 1224578
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.|++...- ......+....+.+.|+..++..
T Consensus 74 ~vi~~~~~---d~~n~~~~~~a~~~~~~~~iia~ 104 (234)
T 2aef_A 74 AVIVDLES---DSETIHCILGIRKIDESVRIIAE 104 (234)
T ss_dssp EEEECCSC---HHHHHHHHHHHHHHCSSSEEEEE
T ss_pred EEEEcCCC---cHHHHHHHHHHHHHCCCCeEEEE
Confidence 88874321 12233344455556776666553
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=87.08 E-value=5.9 Score=30.33 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=53.6
Q ss_pred hCCCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEE-EEeCChh---HHHHHhcchhhhhhhcCCCeeEEeC------CC
Q 027517 30 SGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVI-GLDFSKN---QLSMASSRQDLVSKACYKNIEWVEG------DA 97 (222)
Q Consensus 30 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~-~~D~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~------d~ 97 (222)
.+..++.+||-.|+ | .|..+..+++.. +.+++ .++.++. ..+.+++. + .-.++.. ++
T Consensus 163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~l----G-----a~~vi~~~~~~~~~~ 231 (357)
T 1zsy_A 163 EQLQPGDSVIQNASNSGVGQAVIQIAAAL--GLRTINVVRDRPDIQKLSDRLKSL----G-----AEHVITEEELRRPEM 231 (357)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEECCCSCHHHHHHHHHHT----T-----CSEEEEHHHHHSGGG
T ss_pred hccCCCCEEEEeCCcCHHHHHHHHHHHHc--CCEEEEEecCccchHHHHHHHHhc----C-----CcEEEecCcchHHHH
Confidence 46678999999997 3 478888888876 45554 4554432 23444332 1 1111211 11
Q ss_pred CCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 98 LDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 98 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+.......+|+|+-+-. . . ......+.++++|+++...
T Consensus 232 ~~~~~~~~~~Dvvid~~g-----~-~-~~~~~~~~l~~~G~iv~~G 270 (357)
T 1zsy_A 232 KNFFKDMPQPRLALNCVG-----G-K-SSTELLRQLARGGTMVTYG 270 (357)
T ss_dssp GGTTSSSCCCSEEEESSC-----H-H-HHHHHHTTSCTTCEEEECC
T ss_pred HHHHhCCCCceEEEECCC-----c-H-HHHHHHHhhCCCCEEEEEe
Confidence 111111114898885432 1 1 2245678999999988763
|
| >1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U | Back alignment and structure |
|---|
Probab=87.07 E-value=0.43 Score=41.86 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=64.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCCceeEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAI 110 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v 110 (222)
...+.++||+|.|.-.-.+.+. ++...|+.+|+.|-+-- ..... .+-.+++.|...... ....+|.|
T Consensus 819 ~~~~~~~lDlGTGPE~RiLsLi---P~~~pvtm~D~RP~ae~-----~~~w~----~~T~f~~~DyL~~~~~~~~~~D~v 886 (1289)
T 1ej6_A 819 VYDGDVVLDLGTGPEAKILELI---PATSPVTCVDIRPTAQP-----SGCWN----VRTTFLELDYLSDGWITGVRGDIV 886 (1289)
T ss_dssp CCTTCCEEEESCCSSCGGGGTS---CTTSCEEEEESSCCCSC-----STTBS----SCEEEEESCTTSSSCGGGCCCSEE
T ss_pred ecccceEEEccCCCcceeeeec---CCCCceEEecccCchhh-----hcccc----ccceeeEccccccceeecCCCcEE
Confidence 3567799999999976655554 66779999999774311 11111 467899999877543 23568999
Q ss_pred EEcccccCc-----ccHHHHHHHHhcccCCCc
Q 027517 111 TMGYGLRNV-----VDKRKALEESFRVLKPGS 137 (222)
Q Consensus 111 ~~~~~l~~~-----~~~~~~l~~~~~~l~~gG 137 (222)
.|.++|..- -+....++++.+.+++.|
T Consensus 887 t~i~SLGAA~A~a~~tl~~~~~q~l~~~~~~~ 918 (1289)
T 1ej6_A 887 TCMLSLGAAAAGKSMTFDAAFQQLIKVLSKST 918 (1289)
T ss_dssp EECSCHHHHHHHHTCCHHHHHHHHHHHHHTSC
T ss_pred EEEeechhhhhccCCcHHHHHHHHHHHHHhcC
Confidence 998887643 235667777777776655
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=86.86 E-value=5 Score=29.81 Aligned_cols=105 Identities=12% Similarity=0.088 Sum_probs=62.5
Q ss_pred CCeEEEecCCC-ChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C-----
Q 027517 35 GDNVLDVCCGS-GDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----- 102 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~----- 102 (222)
++++|=.|++. ......+++.+ ..+.+|+.++.+++..+...+..... .++.++..|+.+.. +
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL-----GVKLTVPCDVSDAESVDNMFKVLAE 104 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH-----TCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 56788888753 23333333322 23678999999876555544433222 35678889988742 0
Q ss_pred CCCceeEEEEcccccCc----------c--c-----------HHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLRNV----------V--D-----------KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~----------~--~-----------~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..+..|+++.+..+... + + ...+.+.+...++.+|.++.+..
T Consensus 105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 01358999987765421 1 1 12345667777778888877643
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=86.86 E-value=5.2 Score=29.23 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=61.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCC-hhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---------
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFS-KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF--------- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------- 102 (222)
.++++|--|++. .....+++.+ ..+.+|+.++.. ++..+...+.+...+ .++.++..|+.+...
T Consensus 17 ~~k~~lVTGas~-gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~ 91 (270)
T 3is3_A 17 DGKVALVTGSGR-GIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG----SDAIAIKADIRQVPEIVKLFDQAV 91 (270)
T ss_dssp TTCEEEESCTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 356788777654 4444443332 235688887754 444444444333222 578899999887420
Q ss_pred -CCCceeEEEEcccccCcc--------c-----------HHHHHHHHhcccCCCcEEEEEec
Q 027517 103 -SDCFFDAITMGYGLRNVV--------D-----------KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 -~~~~~D~v~~~~~l~~~~--------~-----------~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..+..|+++.+....... + ...+.+.+.+.++++|.++.+..
T Consensus 92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 013579999776654321 1 12345667777888888877654
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=86.68 E-value=0.49 Score=36.63 Aligned_cols=69 Identities=13% Similarity=0.015 Sum_probs=45.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCceeEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAI 110 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v 110 (222)
...+|+=+|| |.....+++.+....+++..|.+.+.++.+++ .+..+..|+.+.. ..-...|+|
T Consensus 15 ~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~-----------~~~~~~~d~~d~~~l~~~~~~~DvV 81 (365)
T 3abi_A 15 RHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE-----------FATPLKVDASNFDKLVEVMKEFELV 81 (365)
T ss_dssp -CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT-----------TSEEEECCTTCHHHHHHHHTTCSEE
T ss_pred CccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc-----------cCCcEEEecCCHHHHHHHHhCCCEE
Confidence 3468999998 55555666666556789999999988776653 3445566766532 111357998
Q ss_pred EEccc
Q 027517 111 TMGYG 115 (222)
Q Consensus 111 ~~~~~ 115 (222)
++...
T Consensus 82 i~~~p 86 (365)
T 3abi_A 82 IGALP 86 (365)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 87554
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.58 E-value=4.9 Score=29.35 Aligned_cols=81 Identities=20% Similarity=0.174 Sum_probs=52.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 102 (222)
.++.+|--|++.| ....+++.+ ..+++|...|.+++.++...+.+...+ .++..+..|+.+.. .
T Consensus 8 ~gKvalVTGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 8 TGKTALVTGSARG-LGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG----YDAHGVAFDVTDELAIEAAFSKLDA 82 (255)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT----CCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4666777776554 333333322 246799999999988877766654433 57888889987731 1
Q ss_pred CCCceeEEEEcccccCc
Q 027517 103 SDCFFDAITMGYGLRNV 119 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~ 119 (222)
.-++.|+++.+......
T Consensus 83 ~~G~iDiLVNNAG~~~~ 99 (255)
T 4g81_D 83 EGIHVDILINNAGIQYR 99 (255)
T ss_dssp TTCCCCEEEECCCCCCC
T ss_pred HCCCCcEEEECCCCCCC
Confidence 22468999987765443
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=86.31 E-value=2.1 Score=31.13 Aligned_cols=105 Identities=8% Similarity=0.049 Sum_probs=60.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEE-eCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C----
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGL-DFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F---- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~-D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~---- 102 (222)
.++++|--|++.| ....+++.+ ..+.+|+.+ +.+++..+...+.+...+ .++.++..|+.+.. .
T Consensus 7 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (259)
T 3edm_A 7 TNRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG----RSALAIKADLTNAAEVEAAISAAA 81 (259)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT----SCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHHH
Confidence 4567888886554 433333332 235688877 666666555544443222 47888999988742 0
Q ss_pred -CCCceeEEEEccccc-C---ccc----------------HHHHHHHHhcccCCCcEEEEEe
Q 027517 103 -SDCFFDAITMGYGLR-N---VVD----------------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 -~~~~~D~v~~~~~l~-~---~~~----------------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.-+..|+++.+.... . +.+ ...+.+.+.+.++++|.++.+.
T Consensus 82 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 82 DKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp HHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 013689999776433 1 111 1234566667777778776654
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=86.02 E-value=2 Score=33.22 Aligned_cols=89 Identities=9% Similarity=-0.036 Sum_probs=51.7
Q ss_pred CCeEEEecCCC-ChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 35 GDNVLDVCCGS-GDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
..+|.-||+|. |... ..+++ .+.+|+++|.+++.++...+. .+.. ..+..+........|+|++
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~---~G~~V~v~dr~~~~~~~l~~~----------g~~~-~~s~~e~~~~a~~~DvVi~ 87 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRK---GGHECVVYDLNVNAVQALERE----------GIAG-ARSIEEFCAKLVKPRVVWL 87 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTT----------TCBC-CSSHHHHHHHSCSSCEEEE
T ss_pred CCEEEEECchHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHHHHC----------CCEE-eCCHHHHHhcCCCCCEEEE
Confidence 45899999885 3333 33333 256899999999877765543 1111 1122221111123488887
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
.-.-. ....+++.+...+++|..++
T Consensus 88 ~vp~~---~v~~vl~~l~~~l~~g~iiI 112 (358)
T 4e21_A 88 MVPAA---VVDSMLQRMTPLLAANDIVI 112 (358)
T ss_dssp CSCGG---GHHHHHHHHGGGCCTTCEEE
T ss_pred eCCHH---HHHHHHHHHHhhCCCCCEEE
Confidence 55433 45667788888888876553
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=85.99 E-value=1.6 Score=34.97 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=47.7
Q ss_pred CCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~ 109 (222)
.++|+-+||| .....+++.+. .+..|+.+|.+++.++...+.+ .+..+.+|..+.. ..-+..|+
T Consensus 3 ~M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~---------~~~~i~Gd~~~~~~L~~Agi~~ad~ 71 (461)
T 4g65_A 3 AMKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKY---------DLRVVNGHASHPDVLHEAGAQDADM 71 (461)
T ss_dssp CEEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS---------SCEEEESCTTCHHHHHHHTTTTCSE
T ss_pred cCEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc---------CcEEEEEcCCCHHHHHhcCCCcCCE
Confidence 4578877775 56666666653 3458999999999988876653 6788999998742 12245788
Q ss_pred EEE
Q 027517 110 ITM 112 (222)
Q Consensus 110 v~~ 112 (222)
+++
T Consensus 72 ~ia 74 (461)
T 4g65_A 72 LVA 74 (461)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.84 E-value=8.1 Score=27.95 Aligned_cols=107 Identities=7% Similarity=0.016 Sum_probs=63.6
Q ss_pred CCCCeEEEecCC-CChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---------
Q 027517 33 KTGDNVLDVCCG-SGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------- 101 (222)
Q Consensus 33 ~~~~~vLdiG~G-~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------- 101 (222)
.++++||-.|++ +|.....+++.+ ..+.+|+.++.++...+..++..... .++.++..|+.+..
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~ 86 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF-----GSELVFPCDVADDAQIDALFASL 86 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT-----TCCCEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHc-----CCcEEEECCCCCHHHHHHHHHHH
Confidence 456789988974 244444444433 23568999988765544444332221 35788899988742
Q ss_pred -CCCCceeEEEEcccccC-----------cc--c-----------HHHHHHHHhcccCCCcEEEEEec
Q 027517 102 -FSDCFFDAITMGYGLRN-----------VV--D-----------KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~-----------~~--~-----------~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
...++.|+++.+..... .+ + ...+++.+...++++|.++.+..
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 154 (271)
T 3ek2_A 87 KTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY 154 (271)
T ss_dssp HHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence 01136899998766532 11 1 12345666777777888766543
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=85.82 E-value=0.39 Score=35.20 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=30.2
Q ss_pred CceeEEEEccc----ccCcccH-------HHHHHHHhcccCCCcEEEEEecCCC
Q 027517 105 CFFDAITMGYG----LRNVVDK-------RKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 105 ~~~D~v~~~~~----l~~~~~~-------~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
++||+|+++.. .||.... .-+-......|+|||.+++..+..-
T Consensus 210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyA 263 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYA 263 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCC
T ss_pred CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeeccc
Confidence 68999998654 5666432 2234566779999999998776643
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=85.80 E-value=5.6 Score=29.51 Aligned_cols=106 Identities=11% Similarity=0.028 Sum_probs=61.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCCh--hHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C---
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSK--NQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F--- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~--- 102 (222)
.++++|-.|++ |.....+++.+ ..+.+|+.++.+. ...+...+.....+ .++.++..|+.+.. .
T Consensus 48 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~ 122 (294)
T 3r3s_A 48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG----RKAVLLPGDLSDESFARSLVHKA 122 (294)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT----CCEEECCCCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHHHHHH
Confidence 35678888855 44444444433 2356898888763 33333333332222 47888889987732 0
Q ss_pred --CCCceeEEEEcccccCc-c---c----------------HHHHHHHHhcccCCCcEEEEEec
Q 027517 103 --SDCFFDAITMGYGLRNV-V---D----------------KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 --~~~~~D~v~~~~~l~~~-~---~----------------~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..+..|+++.+...... . + ...+.+.+...++.+|.++.+..
T Consensus 123 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 123 REALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 01358999987765321 1 1 12456677778888888877543
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=85.72 E-value=1.5 Score=32.61 Aligned_cols=99 Identities=12% Similarity=0.029 Sum_probs=48.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh-CCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQV-GSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
..++++|=+|+| ..+..++..+ ..+. +++.++-+++..+...+.+.... +.+.+...+..++...-..+|+|
T Consensus 125 l~~k~vlVlGaG--G~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~----~~~~i~~~~~~~l~~~l~~~DiV 198 (283)
T 3jyo_A 125 AKLDSVVQVGAG--GVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAV----GREAVVGVDARGIEDVIAAADGV 198 (283)
T ss_dssp CCCSEEEEECCS--HHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHH----TSCCEEEECSTTHHHHHHHSSEE
T ss_pred cCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhc----CCceEEEcCHHHHHHHHhcCCEE
Confidence 457799999986 3332222211 1244 69999988776554444332211 12333333332321111358999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
+..-+....++....+ -...++++..+
T Consensus 199 InaTp~Gm~~~~~~pi--~~~~l~~~~~v 225 (283)
T 3jyo_A 199 VNATPMGMPAHPGTAF--DVSCLTKDHWV 225 (283)
T ss_dssp EECSSTTSTTSCSCSS--CGGGCCTTCEE
T ss_pred EECCCCCCCCCCCCCC--CHHHhCCCCEE
Confidence 9766654332211011 13456776544
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.56 E-value=5.8 Score=29.04 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=60.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCCh-hHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C----
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSK-NQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F---- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~---- 102 (222)
.++++|=-|++.| ....+++.+ ..+.+|+.++... +..+...+.+...+ .++.++..|+.+.. .
T Consensus 30 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~ 104 (271)
T 3v2g_A 30 AGKTAFVTGGSRG-IGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG----GRAVAIRADNRDAEAIEQAIRETV 104 (271)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHHHHH
Confidence 4668888886554 444333332 2356888886543 44444433332222 57888999988742 0
Q ss_pred -CCCceeEEEEcccccCcc--------c-----------HHHHHHHHhcccCCCcEEEEEe
Q 027517 103 -SDCFFDAITMGYGLRNVV--------D-----------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 -~~~~~D~v~~~~~l~~~~--------~-----------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..+..|+++.+....... + ...+++.+.+.++++|.++.+.
T Consensus 105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 105 EALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 013589999876653221 1 1234666677778888877664
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=84.76 E-value=3.6 Score=30.03 Aligned_cols=104 Identities=14% Similarity=0.244 Sum_probs=61.4
Q ss_pred CCCeEEEecC-CCChhHHHHHHHh-CCCCcEEEEeCChhH-HHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----CC--
Q 027517 34 TGDNVLDVCC-GSGDLSFLLSEQV-GSQGKVIGLDFSKNQ-LSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS-- 103 (222)
Q Consensus 34 ~~~~vLdiG~-G~G~~~~~l~~~~-~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~-- 103 (222)
.++++|-.|+ |+|.....+++.+ ..+.+|+.++.+++. ++...+.. + .++.++..|+.+.. +.
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~----~~~~~~~~Dv~~~~~v~~~~~~~ 78 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL---P----AKAPLLELDVQNEEHLASLAGRV 78 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS---S----SCCCEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc---C----CCceEEEccCCCHHHHHHHHHHH
Confidence 3568888887 3666655555543 235689999987654 33333222 1 36778888987632 00
Q ss_pred ---CC---ceeEEEEcccccC--------cc-----cH-----------HHHHHHHhcccCCCcEEEEEec
Q 027517 104 ---DC---FFDAITMGYGLRN--------VV-----DK-----------RKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ---~~---~~D~v~~~~~l~~--------~~-----~~-----------~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+ ..|+++.+..... +. +. ..+.+.+.+.++++|.++.+..
T Consensus 79 ~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss 149 (269)
T 2h7i_A 79 TEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDF 149 (269)
T ss_dssp HHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcC
Confidence 02 6899998766433 11 11 1345566666677788776543
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=84.75 E-value=3.6 Score=31.59 Aligned_cols=96 Identities=8% Similarity=-0.013 Sum_probs=55.3
Q ss_pred CCCCC-CeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhH----HHHHhcchhhhhhhcCCCeeEEeC------CC
Q 027517 31 GAKTG-DNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQ----LSMASSRQDLVSKACYKNIEWVEG------DA 97 (222)
Q Consensus 31 ~~~~~-~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~------d~ 97 (222)
+..++ .+||-.|+ | .|..+..+++.. +.+++++.-+++. .+.+++. + .-.++.. |+
T Consensus 163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~l----G-----a~~vi~~~~~~~~~~ 231 (364)
T 1gu7_A 163 KLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKEL----G-----ATQVITEDQNNSREF 231 (364)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHH----T-----CSEEEEHHHHHCGGG
T ss_pred ccCCCCcEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCccccHHHHHHHHhc----C-----CeEEEecCccchHHH
Confidence 56788 99999997 4 377788888876 5577777654443 3333321 1 1112211 11
Q ss_pred CC-cC-C---CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 98 LD-LP-F---SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 98 ~~-~~-~---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+ +. . ..+.+|+|+-+-.- .... ...+.|+++|+++....
T Consensus 232 ~~~i~~~t~~~~~g~Dvvid~~G~------~~~~-~~~~~l~~~G~~v~~g~ 276 (364)
T 1gu7_A 232 GPTIKEWIKQSGGEAKLALNCVGG------KSST-GIARKLNNNGLMLTYGG 276 (364)
T ss_dssp HHHHHHHHHHHTCCEEEEEESSCH------HHHH-HHHHTSCTTCEEEECCC
T ss_pred HHHHHHHhhccCCCceEEEECCCc------hhHH-HHHHHhccCCEEEEecC
Confidence 11 10 0 12469999864331 2223 56789999999887644
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.71 E-value=4.2 Score=29.61 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=47.7
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----CC-----
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS----- 103 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~----- 103 (222)
++++|=.|++ |.....+++.+ ..+.+|+.++.+++..+...+.+...... .++.++..|+.+.. +.
T Consensus 7 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 7 GKVALVTGAA-QGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEP--QKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCG--GGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-CcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 5578888854 44444444332 23568999998887665443333211000 35788889988732 00
Q ss_pred CCceeEEEEcccccCc
Q 027517 104 DCFFDAITMGYGLRNV 119 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~ 119 (222)
.+..|+++.+......
T Consensus 84 ~g~id~lv~~Ag~~~~ 99 (267)
T 2gdz_A 84 FGRLDILVNNAGVNNE 99 (267)
T ss_dssp HSCCCEEEECCCCCCS
T ss_pred cCCCCEEEECCCCCCh
Confidence 1357999987765433
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=84.62 E-value=8.1 Score=28.04 Aligned_cols=105 Identities=8% Similarity=-0.007 Sum_probs=60.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChh---HHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C--
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKN---QLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-- 102 (222)
.++++|=-|++ |.....+++.+ ..+.+|+.++.+.. .++...+.+...+ .++.++..|+.+.. +
T Consensus 10 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~ 84 (262)
T 3ksu_A 10 KNKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG----AKVALYQSDLSNEEEVAKLFDF 84 (262)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT----CEEEEEECCCCSHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHHH
Confidence 35678877755 55555555554 34568888876543 3333333322211 46888999988742 0
Q ss_pred ---CCCceeEEEEcccccCcc--------c-----------HHHHHHHHhcccCCCcEEEEEe
Q 027517 103 ---SDCFFDAITMGYGLRNVV--------D-----------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ---~~~~~D~v~~~~~l~~~~--------~-----------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..+..|+++.+....... + ...+.+.+.+.|+++|.++.+.
T Consensus 85 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 85 AEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp HHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 013689999876643221 1 1234556666777788877653
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=84.59 E-value=6.6 Score=29.59 Aligned_cols=96 Identities=13% Similarity=0.011 Sum_probs=53.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE-----eCCCCCcCCCCCce
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV-----EGDALDLPFSDCFF 107 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~d~~~~~~~~~~~ 107 (222)
...+|.-+|+|. |......+.. .+.+|+.+ .+++.++..++.-..... +...+. ..|... ...+
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~--~G~~V~l~-~~~~~~~~i~~~g~~~~~---~~~~~~~~~~~~~~~~~----~~~~ 87 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLAR--AGHEVILI-ARPQHVQAIEATGLRLET---QSFDEQVKVSASSDPSA----VQGA 87 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHH--TTCEEEEE-CCHHHHHHHHHHCEEEEC---SSCEEEECCEEESCGGG----GTTC
T ss_pred cCCcEEEECcCHHHHHHHHHHHH--CCCeEEEE-EcHhHHHHHHhCCeEEEc---CCCcEEEeeeeeCCHHH----cCCC
Confidence 356899999986 4333333333 24589999 888777766543111000 111110 112211 1358
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
|+|+..-.-. ....+++.+...++++..++..
T Consensus 88 D~vilavk~~---~~~~~l~~l~~~l~~~~~iv~~ 119 (318)
T 3hwr_A 88 DLVLFCVKST---DTQSAALAMKPALAKSALVLSL 119 (318)
T ss_dssp SEEEECCCGG---GHHHHHHHHTTTSCTTCEEEEE
T ss_pred CEEEEEcccc---cHHHHHHHHHHhcCCCCEEEEe
Confidence 9988755433 4577889999999888765443
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.29 E-value=6.5 Score=28.75 Aligned_cols=81 Identities=14% Similarity=0.014 Sum_probs=47.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-----C----
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-----S---- 103 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~---- 103 (222)
.++++|-.|+ +|.....+++.+ ..+.+|++++.+++.++...+.+...+. ..++.++..|+.+... .
T Consensus 31 ~~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~ 107 (279)
T 1xg5_A 31 RDRLALVTGA-SGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY--PGTLIPYRCDLSNEEDILSMFSAIRS 107 (279)
T ss_dssp TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--SSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCC--CceEEEEEecCCCHHHHHHHHHHHHH
Confidence 3567887775 455555544433 2356899999988766655443322111 1357788889876420 0
Q ss_pred -CCceeEEEEccccc
Q 027517 104 -DCFFDAITMGYGLR 117 (222)
Q Consensus 104 -~~~~D~v~~~~~l~ 117 (222)
.+.+|+|+.+....
T Consensus 108 ~~g~iD~vi~~Ag~~ 122 (279)
T 1xg5_A 108 QHSGVDICINNAGLA 122 (279)
T ss_dssp HHCCCSEEEECCCCC
T ss_pred hCCCCCEEEECCCCC
Confidence 12589999776543
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=83.95 E-value=1.4 Score=31.84 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=46.0
Q ss_pred CeEEEecCCC-Chh-HHHHHHHhCCCC----cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeE
Q 027517 36 DNVLDVCCGS-GDL-SFLLSEQVGSQG----KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 109 (222)
Q Consensus 36 ~~vLdiG~G~-G~~-~~~l~~~~~~~~----~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (222)
.+|.-||+|. |.. ...+.+. +. +++++|.+++.++...+.. .+.. ..|..+. -...|+
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~---g~~~~~~V~~~~r~~~~~~~~~~~~---------g~~~-~~~~~e~---~~~aDv 66 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK---NIVSSNQIICSDLNTANLKNASEKY---------GLTT-TTDNNEV---AKNADI 66 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT---TSSCGGGEEEECSCHHHHHHHHHHH---------CCEE-CSCHHHH---HHHCSE
T ss_pred CeEEEECccHHHHHHHHHHHhC---CCCCCCeEEEEeCCHHHHHHHHHHh---------CCEE-eCChHHH---HHhCCE
Confidence 4688899886 332 3344432 33 8999999998777665432 2221 1121111 123688
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
|+..-. ......+++.+...+++|..+
T Consensus 67 Vilav~---~~~~~~v~~~l~~~l~~~~~v 93 (247)
T 3gt0_A 67 LILSIK---PDLYASIINEIKEIIKNDAII 93 (247)
T ss_dssp EEECSC---TTTHHHHC---CCSSCTTCEE
T ss_pred EEEEeC---HHHHHHHHHHHHhhcCCCCEE
Confidence 877552 233456677777777776544
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=83.92 E-value=5.2 Score=29.89 Aligned_cols=88 Identities=18% Similarity=0.099 Sum_probs=49.1
Q ss_pred CCeEEEecCCC-ChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 35 GDNVLDVCCGS-GDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
..+|.-||+|. |... ..+++ .+.+|+++|.+++.++...+. .......+..+. -...|+|+.
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~~~~~----------g~~~~~~~~~e~---~~~aDvvi~ 70 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLR---AGLSTWGADLNPQACANLLAE----------GACGAAASAREF---AGVVDALVI 70 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHT----------TCSEEESSSTTT---TTTCSEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHHc----------CCccccCCHHHH---HhcCCEEEE
Confidence 35788899886 3332 33333 356899999999887766543 112223333332 134688887
Q ss_pred cccccCcccHHHHH---HHHhcccCCCcEEE
Q 027517 113 GYGLRNVVDKRKAL---EESFRVLKPGSRIS 140 (222)
Q Consensus 113 ~~~l~~~~~~~~~l---~~~~~~l~~gG~l~ 140 (222)
.-.-. .....++ +.+...+++|..++
T Consensus 71 ~vp~~--~~~~~v~~~~~~l~~~l~~g~ivv 99 (303)
T 3g0o_A 71 LVVNA--AQVRQVLFGEDGVAHLMKPGSAVM 99 (303)
T ss_dssp CCSSH--HHHHHHHC--CCCGGGSCTTCEEE
T ss_pred ECCCH--HHHHHHHhChhhHHhhCCCCCEEE
Confidence 44211 1123344 55566777776553
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=83.84 E-value=5.5 Score=29.41 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=49.9
Q ss_pred CeEEEecC-CC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 36 DNVLDVCC-GS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 36 ~~vLdiG~-G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
.+|.=||+ |. |......+.. .+.+|+++|.+++..+...+. .+.. .+..+. -...|+|+..
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~--~g~~V~~~~r~~~~~~~~~~~----------g~~~--~~~~~~---~~~aDvVi~a 74 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHD--SAHHLAAIEIAPEGRDRLQGM----------GIPL--TDGDGW---IDEADVVVLA 74 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH--SSSEEEEECCSHHHHHHHHHT----------TCCC--CCSSGG---GGTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHhc----------CCCc--CCHHHH---hcCCCEEEEc
Confidence 48999998 75 4333322222 246899999998877665441 1111 122221 1347999875
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
-.-. ....+++.+...++++..++
T Consensus 75 v~~~---~~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 75 LPDN---IIEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp SCHH---HHHHHHHHHGGGSCTTCEEE
T ss_pred CCch---HHHHHHHHHHHhCCCCCEEE
Confidence 5432 24667778888888776443
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=83.60 E-value=1.9 Score=32.11 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=30.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC---CCCcEEEEeCChh
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG---SQGKVIGLDFSKN 70 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~~~~D~~~~ 70 (222)
++..|+-+|||.|.....+++.++ ...+.+.+|..+.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~ 99 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHH 99 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCC
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcc
Confidence 467999999999999999988763 2358999998664
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=83.40 E-value=0.68 Score=35.20 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=38.3
Q ss_pred eeEE-eCCCCCc--CCCCCceeEEEEcccccCc-----------ccHHHHHHHHhcccCCCcEEEEEe
Q 027517 90 IEWV-EGDALDL--PFSDCFFDAITMGYGLRNV-----------VDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 90 i~~~-~~d~~~~--~~~~~~~D~v~~~~~l~~~-----------~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..++ ++|..+. ..+++++|+|++.-....- ......+..+.++|+|||.+++..
T Consensus 39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 106 (319)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 4566 8887652 2455689999986665421 124567888899999999998754
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=83.14 E-value=7 Score=29.62 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=57.0
Q ss_pred CCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~ 109 (222)
..+|+=+|+ |.....+++.+. .+. ++.+|.+++.++ .++ ..+.++.+|..+.. ..-+..|.
T Consensus 115 ~~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~----------~~~~~i~gd~~~~~~L~~a~i~~a~~ 180 (336)
T 1lnq_A 115 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR----------SGANFVHGDPTRVSDLEKANVRGARA 180 (336)
T ss_dssp -CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH----------TTCEEEESCTTSHHHHHHTCSTTEEE
T ss_pred cCCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh----------CCcEEEEeCCCCHHHHHhcChhhccE
Confidence 457888886 567777776653 244 999999998877 443 36789999988742 22356888
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+++... -++.........+.+.|...++..
T Consensus 181 vi~~~~---~d~~n~~~~~~ar~~~~~~~iiar 210 (336)
T 1lnq_A 181 VIVDLE---SDSETIHCILGIRKIDESVRIIAE 210 (336)
T ss_dssp EEECCS---SHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred EEEcCC---ccHHHHHHHHHHHHHCCCCeEEEE
Confidence 887432 112233344455566676666543
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=83.05 E-value=3 Score=35.87 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=33.8
Q ss_pred CCeEEEecCCCChhHHHHHHHhC---CCC-cEEEEeCChhHHHHHhcch
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVG---SQG-KVIGLDFSKNQLSMASSRQ 79 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~---~~~-~~~~~D~~~~~~~~~~~~~ 79 (222)
..+|||+-||-|+++.-+.+... ... .+.++|+++.+.+.-+.+.
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 35899999999999988876520 012 4689999999888777664
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=82.88 E-value=13 Score=27.90 Aligned_cols=101 Identities=10% Similarity=0.026 Sum_probs=49.3
Q ss_pred eEEEecCCCChh-HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeEEEEcc
Q 027517 37 NVLDVCCGSGDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 37 ~vLdiG~G~G~~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~~~~ 114 (222)
+|.=+|+|.-.. ....+...+.+.+++.+|.+++.++.....+............+.. .|..++ ...|+|+...
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~l----~~aDvViiav 77 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADT----ANSDIVIITA 77 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGG----TTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHHH----CCCCEEEEeC
Confidence 577788876333 2222222112568999999987666432111110000001222222 344332 3468888766
Q ss_pred cccCccc-----H--------HHHHHHHhcccCCCcEEEEE
Q 027517 115 GLRNVVD-----K--------RKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 115 ~l~~~~~-----~--------~~~l~~~~~~l~~gG~l~i~ 142 (222)
....-+. . ..+.+.+.+. .|++++++.
T Consensus 78 ~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~viv~ 117 (310)
T 1guz_A 78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVV 117 (310)
T ss_dssp SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEE
Confidence 4332221 1 3444555555 588887664
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=82.78 E-value=8.9 Score=28.86 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=51.4
Q ss_pred CeEEEecCCC-ChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE----eCCCCCcCCCCCceeE
Q 027517 36 DNVLDVCCGS-GDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV----EGDALDLPFSDCFFDA 109 (222)
Q Consensus 36 ~~vLdiG~G~-G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~d~~~~~~~~~~~D~ 109 (222)
.+|.-+|+|. |... ..|++. +.+|+.++-++ .+..++.--...........+. ..|..+. .+.+|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~---g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~---~~~~Dl 74 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT---GHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAEL---ETKPDC 74 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT---TCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGC---SSCCSE
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHc---CCCCCE
Confidence 4788899986 4333 334432 46899999876 2433332000000000122221 1122221 236899
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
|+..---.... .+++.+...++++..++..
T Consensus 75 VilavK~~~~~---~~l~~l~~~l~~~t~Iv~~ 104 (320)
T 3i83_A 75 TLLCIKVVEGA---DRVGLLRDAVAPDTGIVLI 104 (320)
T ss_dssp EEECCCCCTTC---CHHHHHTTSCCTTCEEEEE
T ss_pred EEEecCCCChH---HHHHHHHhhcCCCCEEEEe
Confidence 99866655554 4677888889888766544
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=82.72 E-value=5.1 Score=24.62 Aligned_cols=69 Identities=19% Similarity=0.090 Sum_probs=42.4
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCC-CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCceeE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~ 109 (222)
..+|+-+|+ |.....+++.+ ..+ .+++++|.+++.++.... ..+.....|..+.. ..-..+|+
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~d~ 72 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR----------MGVATKQVDAKDEAGLAKALGGFDA 72 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT----------TTCEEEECCTTCHHHHHHHTTTCSE
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh----------CCCcEEEecCCCHHHHHHHHcCCCE
Confidence 468999998 44444333322 124 589999999877665541 35667777776521 01135799
Q ss_pred EEEccc
Q 027517 110 ITMGYG 115 (222)
Q Consensus 110 v~~~~~ 115 (222)
|+.+..
T Consensus 73 vi~~~~ 78 (118)
T 3ic5_A 73 VISAAP 78 (118)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 887654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=82.72 E-value=2.6 Score=31.21 Aligned_cols=98 Identities=14% Similarity=0.073 Sum_probs=54.6
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh----hc-----------CCCeeEEeCCCCC
Q 027517 36 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK----AC-----------YKNIEWVEGDALD 99 (222)
Q Consensus 36 ~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~----~~-----------~~~i~~~~~d~~~ 99 (222)
.+|.=||+|. |......+.. .+.+|+.+|.+++.++.+.+....... .. ..++.. ..|..+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~ 81 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAF--HGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQ 81 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHH
Confidence 4788889886 3333333333 356999999999988887765321100 00 001222 223322
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
. -...|+|+..-. ........+++++...++|+..++
T Consensus 82 ~---~~~aDlVi~av~-~~~~~~~~v~~~l~~~~~~~~il~ 118 (283)
T 4e12_A 82 A---VKDADLVIEAVP-ESLDLKRDIYTKLGELAPAKTIFA 118 (283)
T ss_dssp H---TTTCSEEEECCC-SCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred H---hccCCEEEEecc-CcHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 134688887432 122234667888888888877653
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=82.28 E-value=5.4 Score=29.49 Aligned_cols=90 Identities=11% Similarity=0.045 Sum_probs=51.9
Q ss_pred CeEEEecCCC-Chh-HHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 36 DNVLDVCCGS-GDL-SFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 36 ~~vLdiG~G~-G~~-~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.+|.-||||. |.. ...+.+. + +..+|+.+|.+++.++...+.. .+... .|..+. -...|+|+.
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~-g~~~~~V~v~dr~~~~~~~l~~~~---------gi~~~-~~~~~~---~~~aDvVil 69 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIAN-GYDPNRICVTNRSLDKLDFFKEKC---------GVHTT-QDNRQG---ALNADVVVL 69 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHT-TCCGGGEEEECSSSHHHHHHHHTT---------CCEEE-SCHHHH---HSSCSEEEE
T ss_pred CEEEEEcccHHHHHHHHHHHHC-CCCCCeEEEEeCCHHHHHHHHHHc---------CCEEe-CChHHH---HhcCCeEEE
Confidence 5788899986 332 3334433 1 1127999999998877766542 33332 222221 124688887
Q ss_pred cccccCcccHHHHHHHHhcc-cCCCcEEEEEe
Q 027517 113 GYGLRNVVDKRKALEESFRV-LKPGSRISVLD 143 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~-l~~gG~l~i~~ 143 (222)
.-.. .....+++++... ++++- ++++.
T Consensus 70 av~p---~~~~~vl~~l~~~~l~~~~-iiiS~ 97 (280)
T 3tri_A 70 AVKP---HQIKMVCEELKDILSETKI-LVISL 97 (280)
T ss_dssp CSCG---GGHHHHHHHHHHHHHTTTC-EEEEC
T ss_pred EeCH---HHHHHHHHHHHhhccCCCe-EEEEe
Confidence 5532 3456778888877 76654 44443
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=81.78 E-value=4.9 Score=30.19 Aligned_cols=97 Identities=18% Similarity=0.106 Sum_probs=51.0
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 34 TGDNVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
+..+|.=+|+|. |. .+..++.. +...++..+|++++....+..... .. .+++... .|..++ ...|+|+
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~-g~~~ev~L~Di~~~~~g~a~dl~~-~~---~~~i~~t-~d~~~l----~~aD~Vi 82 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAK-GIADRLVLLDLSEGTKGATMDLEI-FN---LPNVEIS-KDLSAS----AHSKVVI 82 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECCC-----CHHHHHH-HT---CTTEEEE-SCGGGG----TTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEcCCcchHHHHHHHhh-hc---CCCeEEe-CCHHHH----CCCCEEE
Confidence 346899999996 32 44444444 333489999999863333333321 11 1345542 454332 2469998
Q ss_pred Eccccc------------CcccHHHHHHHHhcccCCCcEEEE
Q 027517 112 MGYGLR------------NVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 112 ~~~~l~------------~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
...... ..+-...+++.+.+.. |++++++
T Consensus 83 ~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv 123 (303)
T 2i6t_A 83 FTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLV 123 (303)
T ss_dssp ECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEE
T ss_pred EcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 765332 1111345666666664 8998766
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=81.71 E-value=3.7 Score=26.31 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=39.8
Q ss_pred CCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~ 109 (222)
..+|+-+|+| .....+++.+. .+.+++.+|.+++..+..++. ....+.+|..+.. ...+.+|+
T Consensus 6 ~~~v~I~G~G--~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~----------~~~~~~~d~~~~~~l~~~~~~~~d~ 73 (144)
T 2hmt_A 6 NKQFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASY----------ATHAVIANATEENELLSLGIRNFEY 73 (144)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTT----------CSEEEECCTTCHHHHHTTTGGGCSE
T ss_pred CCcEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------CCEEEEeCCCCHHHHHhcCCCCCCE
Confidence 4579999974 44444443321 245899999988665543321 2345666665421 11245899
Q ss_pred EEEccc
Q 027517 110 ITMGYG 115 (222)
Q Consensus 110 v~~~~~ 115 (222)
|+....
T Consensus 74 vi~~~~ 79 (144)
T 2hmt_A 74 VIVAIG 79 (144)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 887553
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=81.08 E-value=6 Score=29.99 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=53.3
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCCh----hHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----CCCC
Q 027517 36 DNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSK----NQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FSDC 105 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 105 (222)
++||=.| |+|.....+++.+ ..+.+|++++-++ +..+..... .. .+++++.+|+.+.. +...
T Consensus 11 ~~IlVtG-atG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l----~~---~~v~~~~~Dl~d~~~l~~~~~~~ 82 (346)
T 3i6i_A 11 GRVLIAG-ATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKAL----ED---KGAIIVYGLINEQEAMEKILKEH 82 (346)
T ss_dssp CCEEEEC-TTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHH----HH---TTCEEEECCTTCHHHHHHHHHHT
T ss_pred CeEEEEC-CCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHH----Hh---CCcEEEEeecCCHHHHHHHHhhC
Confidence 4788888 4666666555543 2346899998765 222221111 11 47899999998732 1112
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhc
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFR 131 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~ 131 (222)
.+|+|+.+....++.....+++.+.+
T Consensus 83 ~~d~Vi~~a~~~n~~~~~~l~~aa~~ 108 (346)
T 3i6i_A 83 EIDIVVSTVGGESILDQIALVKAMKA 108 (346)
T ss_dssp TCCEEEECCCGGGGGGHHHHHHHHHH
T ss_pred CCCEEEECCchhhHHHHHHHHHHHHH
Confidence 58999988877666555555555544
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=80.87 E-value=6.4 Score=28.61 Aligned_cols=88 Identities=7% Similarity=0.009 Sum_probs=51.4
Q ss_pred CCeEEEecCCC-ChhH-HHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 35 GDNVLDVCCGS-GDLS-FLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~-~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..+|.-+|+|. |... ..+.+. +.+ +.++|.+++..+...+.. .+.. ..|..+. -...|+|+
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~---g~~~v~~~~~~~~~~~~~~~~~---------g~~~-~~~~~~~---~~~~Dvvi 73 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRK---GFRIVQVYSRTEESARELAQKV---------EAEY-TTDLAEV---NPYAKLYI 73 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHH---TCCEEEEECSSHHHHHHHHHHT---------TCEE-ESCGGGS---CSCCSEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC---CCeEEEEEeCCHHHHHHHHHHc---------CCce-eCCHHHH---hcCCCEEE
Confidence 35799999975 4333 333333 346 899999988776655432 2222 2233332 13479998
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
..-.-. ....+++.+...+++|..++-
T Consensus 74 ~av~~~---~~~~v~~~l~~~~~~~~ivv~ 100 (266)
T 3d1l_A 74 VSLKDS---AFAELLQGIVEGKREEALMVH 100 (266)
T ss_dssp ECCCHH---HHHHHHHHHHTTCCTTCEEEE
T ss_pred EecCHH---HHHHHHHHHHhhcCCCcEEEE
Confidence 755332 235667777777877765543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=80.79 E-value=16 Score=27.53 Aligned_cols=104 Identities=15% Similarity=0.079 Sum_probs=52.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
+..+|.-+|+|. |......+...+...++..+|++++..+.....+..........+.+...+...+ ...|+|+.
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al----~~aDvVii 80 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDC----RDADLVVI 80 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGT----TTCSEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHh----CCCCEEEE
Confidence 346899999986 3322222322233348999999987444321111111111001344443332222 24699987
Q ss_pred cccccCcc-----c--------HHHHHHHHhcccCCCcEEEEE
Q 027517 113 GYGLRNVV-----D--------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 113 ~~~l~~~~-----~--------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.......+ + ...+.+.+.+. .|++++++.
T Consensus 81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~~iv~ 122 (316)
T 1ldn_A 81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVA 122 (316)
T ss_dssp CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEEC
T ss_pred cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH-CCCCEEEEe
Confidence 65443322 1 13344555554 588887663
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=80.63 E-value=5.5 Score=29.13 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=48.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCC------------hhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFS------------KNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~------------~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.++++|=-|++. .....+++.+ ..+.+|+.+|.+ ++.++...+.....+ .++.++..|+.+.
T Consensus 12 ~gk~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~ 86 (278)
T 3sx2_A 12 TGKVAFITGAAR-GQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG----SRIVARQADVRDR 86 (278)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT----CCEEEEECCTTCH
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC----CeEEEEeCCCCCH
Confidence 356788888554 4444433332 236789999976 455544444333222 5789999999874
Q ss_pred C-----CC-----CCceeEEEEcccccCc
Q 027517 101 P-----FS-----DCFFDAITMGYGLRNV 119 (222)
Q Consensus 101 ~-----~~-----~~~~D~v~~~~~l~~~ 119 (222)
. +. .+..|+++.+......
T Consensus 87 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~ 115 (278)
T 3sx2_A 87 ESLSAALQAGLDELGRLDIVVANAGIAPM 115 (278)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 2 00 1368999987765543
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.35 E-value=5.1 Score=29.29 Aligned_cols=105 Identities=13% Similarity=0.116 Sum_probs=58.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEe-CChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C----
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLD-FSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F---- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~---- 102 (222)
.++++|=-|++.| ....+++.+ ..+.+|+..+ .+++..+...+.....+ .++.++..|+.+.. .
T Consensus 26 ~~k~~lVTGas~G-IG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~~~~~~~ 100 (267)
T 3u5t_A 26 TNKVAIVTGASRG-IGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG----GKALTAQADVSDPAAVRRLFATAE 100 (267)
T ss_dssp -CCEEEEESCSSH-HHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHHHHHHH
Confidence 4567888886554 333333222 1256777764 44445554444333222 47888899988742 0
Q ss_pred -CCCceeEEEEcccccCcc---c----------------HHHHHHHHhcccCCCcEEEEEe
Q 027517 103 -SDCFFDAITMGYGLRNVV---D----------------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 -~~~~~D~v~~~~~l~~~~---~----------------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..+..|+++.+....... + ...+++.+.+.++++|.++.+.
T Consensus 101 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 101 EAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp HHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 013689999877654321 1 1134556666777788877654
|
| >3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A | Back alignment and structure |
|---|
Probab=80.16 E-value=0.88 Score=40.27 Aligned_cols=92 Identities=17% Similarity=0.093 Sum_probs=63.7
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCC-eeEEeCCCCCcCC-CCCceeEEEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN-IEWVEGDALDLPF-SDCFFDAITM 112 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~-~~~~~D~v~~ 112 (222)
+..+||+|.|.-.-.+.+. ++...|+.+|..|-+--.+--+ .. -++++.|...... ....+|.+.|
T Consensus 828 ~~~~lDLGTGPEcRiLsli---P~~~pvtmvD~RP~ae~~~~w~---------~~~T~yi~~DYl~~~~~~~~~~d~vta 895 (1299)
T 3iyl_W 828 LAHLLDLGTGPECRILSLI---PPTLQVTMSDSRPCAELMASFD---------PALTAYVQGDYSTAAFWNGIRCDSATA 895 (1299)
T ss_dssp GCSEEEETCCSSCSGGGSS---CTTSCEEEEESSCCSSCGGGBC---------TTTEEEEESCSSSGGGGSSCCCSEEEE
T ss_pred CCEEEEcCCCccceeeecC---CCCCceEEEecCCccccccccc---------cccceeEEeccccceeEecCCCCEEEE
Confidence 4799999999866555444 6777999999977432222111 35 7899999887543 3456899999
Q ss_pred cccccCc-----ccHHHHHHHHhcccCCCcE
Q 027517 113 GYGLRNV-----VDKRKALEESFRVLKPGSR 138 (222)
Q Consensus 113 ~~~l~~~-----~~~~~~l~~~~~~l~~gG~ 138 (222)
..+|..- -+....++++.+.+++.|.
T Consensus 896 ilSLGAA~a~a~~tl~~~l~~~l~~~~~~~v 926 (1299)
T 3iyl_W 896 IFTIGAAAAAAGTDLIAFVQQLIPRIVAAGG 926 (1299)
T ss_dssp TTTHHHHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred eeechhhhhhCCCcHHHHHHHHHHHHHhcCc
Confidence 8877643 2456777777777777663
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=80.11 E-value=11 Score=27.67 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=58.3
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhH-HHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----CC----
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQ-LSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS---- 103 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~---- 103 (222)
++++|-.|++ |.....+++.+ ..+.+|+.++.+++. .+...+.+...+ .++.++..|+.+.. +.
T Consensus 29 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 29 GKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG----SDAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp TCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 4577777754 55555444433 235689999877643 333222222111 46888888987632 00
Q ss_pred -CCceeEEEEcccccCcc--------cH-----------HHHHHHHhcccCCCcEEEEEe
Q 027517 104 -DCFFDAITMGYGLRNVV--------DK-----------RKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 104 -~~~~D~v~~~~~l~~~~--------~~-----------~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+..|+++.+....... +. ..+++.+.+.|+.+|.++.+.
T Consensus 104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 13579999876654321 11 124455666666778877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 222 | ||||
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 3e-19 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 2e-17 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 5e-17 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-15 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 2e-15 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-14 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 4e-14 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 5e-14 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-13 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 3e-13 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 3e-12 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 5e-12 | |
| d1i1na_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 1e-11 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 1e-11 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 2e-11 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 8e-11 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 8e-10 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-09 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 3e-09 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 4e-09 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 2e-08 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 5e-08 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 9e-08 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 1e-07 | |
| d1dl5a1 | 213 | c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methylt | 1e-07 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 1e-07 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 2e-07 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-07 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 4e-07 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 3e-06 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 4e-06 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 5e-06 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 6e-06 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 9e-06 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 3e-05 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-05 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 4e-05 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 1e-04 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 3e-04 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 4e-04 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 8e-04 | |
| d2ih2a1 | 223 | c.66.1.27 (A:21-243) DNA methylase TaqI, N-termina | 0.001 | |
| d1vbfa_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 0.004 | |
| d1dusa_ | 194 | c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo | 0.004 | |
| d1wg8a2 | 182 | c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransf | 0.004 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 80.8 bits (198), Expect = 3e-19
Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 6/165 (3%)
Query: 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78
H + + + + VLD+ G+G + S V + IG+D +K + +ASS
Sbjct: 1 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSF 57
Query: 79 QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSR 138
+ + PF D FD IT Y + D RKA+ E RVLK R
Sbjct: 58 AQEKGVENVRFQQGTAESL---PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGR 114
Query: 139 ISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183
++D P + L+E ++
Sbjct: 115 FLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSAN 159
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 76.8 bits (188), Expect = 2e-17
Identities = 29/194 (14%), Positives = 67/194 (34%), Gaps = 20/194 (10%)
Query: 11 NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 70
+D +SF + +WK +++D CG G L +L + K G+D +
Sbjct: 12 DDYVSFLVNTVWK--------ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGET 63
Query: 71 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESF 130
L+ A L+ L + +D L ++ L++
Sbjct: 64 LLAEARELFRLLPYDSEFLEGDATEIEL-----NDKYDIAICHAFLLHMTTPETMLQKMI 118
Query: 131 RVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEY--QYLKSSIREFL 188
+K G +I + + + + + +++D G+ ++ + + ++
Sbjct: 119 HSVKKGGKIICFEPH-----WISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 173
Query: 189 TGKDLEKLALEIGF 202
G + E+G
Sbjct: 174 IGMKIPIYLSELGV 187
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 75.0 bits (184), Expect = 5e-17
Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 5/117 (4%)
Query: 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 84
V G VL+ GSG L+ L VG G+VI + + A
Sbjct: 87 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG 146
Query: 85 ACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141
N V D D D D + +++ + L+ R+L G + V
Sbjct: 147 QPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMV 198
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.0 bits (176), Expect = 2e-15
Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 18/169 (10%)
Query: 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQ---- 79
K GD +D+ G G+ + + G G + + + +
Sbjct: 206 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELK 264
Query: 80 ---DLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY--GLRNVVDKRKALEESFRVLK 134
L ++ +D + D K +E+ + K
Sbjct: 265 KRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAK 324
Query: 135 PGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183
G +I L S + T I + ++N + Y + S
Sbjct: 325 VGCKIISLK---SLRSLTYQINFYNVEN-----IFNRLKVQRYDLKEDS 365
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.4 bits (174), Expect = 2e-15
Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 21/152 (13%)
Query: 6 LKLQLNDLLSFGQHR---IWKRMA---VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ 59
+ L D + + + + +S GD VL+ GSG +S LS+ VGSQ
Sbjct: 64 RRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQ 123
Query: 60 GKVIGLDFSKNQLSMA--------SSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDA 109
G+VI + K+ +A S + + N++++ D FDA
Sbjct: 124 GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDA 183
Query: 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141
+ + ++++ L + LK G +V
Sbjct: 184 VAL-----DMLNPHVTLPVFYPHLKHGGVCAV 210
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (168), Expect = 1e-14
Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 8/127 (6%)
Query: 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83
+ D +D+ G G + ++ + G++ + A +
Sbjct: 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFR 199
Query: 84 KAC------YKNIEWVEGDALDLPFSDCFFDA-ITMGYGLRNVVDKRKALEESFRVLKPG 136
K + GD L + + + + + L+E F +K G
Sbjct: 200 KWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEG 259
Query: 137 SRISVLD 143
RI
Sbjct: 260 GRIVSSK 266
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 66.9 bits (162), Expect = 4e-14
Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 12/172 (6%)
Query: 14 LSFGQHRIWK-------RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD 66
+S +HRI K G +LD+ GSG++ + G G+D
Sbjct: 6 ISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGIT--GTGID 63
Query: 67 FSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKAL 126
S + A R + + + ++ D A
Sbjct: 64 MSSLFTAQAKRRAE---ELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAE 120
Query: 127 EESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQ 178
E + LKPG + + + P T I + + + GL +
Sbjct: 121 ELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFD 172
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 67.0 bits (163), Expect = 5e-14
Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC 86
+ G + G ++L+V GSG++S + + +G + ++ ++ L A +L
Sbjct: 78 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKA--MDNLSEFYD 135
Query: 87 YKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141
N+ D D + I ++ D +++ ++KPGS +
Sbjct: 136 IGNVRTSRSDIADFISDQMYDAVIA------DIPDPWNHVQKIASMMKPGSVATF 184
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 64.7 bits (156), Expect = 2e-13
Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 6/157 (3%)
Query: 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC 86
+ + K + VLDV G G ++ + V KV+ D +++ L +A + +
Sbjct: 8 MQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQ 64
Query: 87 YKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146
+ ++ PF+D F +T + + + E++RVLK G ++ ++D +
Sbjct: 65 VEYVQGDAEQM---PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 121
Query: 147 STQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183
++ + ++ + L+ +
Sbjct: 122 PENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEA 158
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 64.7 bits (157), Expect = 3e-13
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC 86
K GD ++D GSG + +L+ VGS GKV + + +A ++
Sbjct: 96 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLA--------ESN 147
Query: 87 YKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142
+E + + FD + +V D +++ + LK G R + +
Sbjct: 148 LTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATV 203
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.9 bits (149), Expect = 3e-12
Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 11/139 (7%)
Query: 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFL-----LSEQVGSQGKVIGLDFSKNQLS 73
+ + K+ +L + G+G++ ++ G ++ S Q++
Sbjct: 25 DKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIA 84
Query: 74 M------ASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALE 127
S + V A +K + +D I M L V D L+
Sbjct: 85 KYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLK 144
Query: 128 ESFRVLKPGSRISVLDFNK 146
+L +++ ++ +
Sbjct: 145 FFHSLLGTNAKMLIIVVSG 163
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 60.2 bits (145), Expect = 5e-12
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 11/154 (7%)
Query: 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 84
+ + + D +DV CG+G ++ E G +V +D + +S +L
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTL---ELAGRVRRVYAIDRNPEAISTT--EMNLQRH 78
Query: 85 ACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144
N+ +EGDA + D +G + + + + LKPG RI V
Sbjct: 79 GLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRII---KDKLKPGGRIIVTAI 135
Query: 145 NKSTQPFTTAIQE---WMIDNVVVPVASGYGLAE 175
T+ + ++ + +A G L
Sbjct: 136 LLETKFEAMECLRDLGFDVNITELNIARGRALDR 169
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (144), Expect = 1e-11
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 9/136 (6%)
Query: 6 LKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGL 65
+ +S + + + G LDV GSG L+ + VG GKVIG+
Sbjct: 49 QSIGFQATISAPHMHAYALELL-FDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGI 107
Query: 66 DFSKNQLSMASSRQDL--VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKR 123
D K + + + + ++ V GD + +DAI +G V
Sbjct: 108 DHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVV---- 163
Query: 124 KALEESFRVLKPGSRI 139
+ LKPG R+
Sbjct: 164 --PQALIDQLKPGGRL 177
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.3 bits (145), Expect = 1e-11
Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 9/133 (6%)
Query: 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81
+K + VLDV CG+G S +L E+ S V D +
Sbjct: 44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRK 103
Query: 82 VSKACYKNIEWVEGDALD--LPFSDCFFDAITMGYGL-------RNVVDKRKALEESFRV 132
IE LD +P D F I +G + + R AL+ +
Sbjct: 104 EPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASM 163
Query: 133 LKPGSRISVLDFN 145
++PG + + N
Sbjct: 164 VRPGGLLVIDHRN 176
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 58.9 bits (142), Expect = 2e-11
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 18/171 (10%)
Query: 16 FGQHRIW-----KRMAVSWSGA----KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD 66
F +R W K A+ G + + VL + SG L++ V + ++
Sbjct: 29 FDGYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEG-IIYAVE 87
Query: 67 FSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG-LRNVVDKRKA 125
+S NI + DA + + + Y +
Sbjct: 88 YSAKPFEKLLEL-----VRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEIL 142
Query: 126 LEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEE 176
+ LK + ++ +S TA E + +V+ + + + +
Sbjct: 143 KANAEFFLKEKGEVVIMVKARSIDS--TAEPEEVFKSVLKEMEGDFKIVKH 191
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 57.4 bits (138), Expect = 8e-11
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 4/124 (3%)
Query: 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC 86
+ K G +VL + SG + +S+ VG +GK+ G++FS L +
Sbjct: 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRN-- 123
Query: 87 YKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146
I + D I + ++ + LK G + ++
Sbjct: 124 IVPILGDATKPEEYRALVPKVDVIFEDVAQPT--QAKILIDNAEVYLKRGGYGMIAVKSR 181
Query: 147 STQP 150
S
Sbjct: 182 SIDV 185
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 54.8 bits (130), Expect = 8e-10
Identities = 24/176 (13%), Positives = 55/176 (31%), Gaps = 7/176 (3%)
Query: 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNI 90
NV D+ C G + + K+IG+D S+ + + +
Sbjct: 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA--AYHSEIPV 94
Query: 91 EWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 150
E + D + + + D+ L + + L P + + + +
Sbjct: 95 EILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDT 154
Query: 151 FTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS--SIREFLTGKDLEKLALEIGFSR 204
+ + A+GY E Q + ++ + + + +GFS+
Sbjct: 155 KINHLLIDLHHQFK--RANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQ 208
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.2 bits (132), Expect = 1e-09
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 8/108 (7%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94
VLDV G+G L ++ KVIG++ S + + ++
Sbjct: 34 DKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKA---NKLDHVVTIIK 88
Query: 95 GDALDLPFSDCFFDAITM---GYGLRNVVDKRKALEESFRVLKPGSRI 139
G ++ D I GY L L + L P I
Sbjct: 89 GKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLI 136
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 53.4 bits (127), Expect = 3e-09
Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 18/195 (9%)
Query: 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81
+ + + K GD+VLD+ CG G G+ G+D ++ ++ A R
Sbjct: 12 FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARN 69
Query: 82 VSKACYKNIEWVEGDALDLPFSDCFFDAI-----TMGYGLRNVVDKRKALEESFRVLKPG 136
+ + + + D+ + + Y A R L+PG
Sbjct: 70 MKRRFK--VFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 127
Query: 137 SRISVLDFN-----KSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE----F 187
+ + + + + + I+ + + E L S+ F
Sbjct: 128 GYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYF 187
Query: 188 LTGKDLEKLALEIGF 202
+ + +G
Sbjct: 188 VDFTRMVDGFKRLGL 202
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (125), Expect = 4e-09
Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 7/150 (4%)
Query: 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA---SSRQDLVSKACYK 88
+ G VL+V G + + E + ++ + + RQ
Sbjct: 51 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG 108
Query: 89 NIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148
E V D F +D + + +FR+LKPG ++ +
Sbjct: 109 LWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG 168
Query: 149 QPFTTAIQE--WMIDNVVVPVASGYGLAEE 176
+ + + M + VP G E
Sbjct: 169 ELMKSKYSDITIMFEETQVPALLEAGFRRE 198
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 50.7 bits (120), Expect = 2e-08
Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 19/137 (13%)
Query: 12 DLLSFGQHRIWKRMAVSW---SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
L G ++ + V+ VLD+ CG G + ++ + GLD S
Sbjct: 59 AFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADA-LPEITTFGLDVS 117
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
K + + Y + + + LPFSD DAI Y EE
Sbjct: 118 KVAIKA--------AAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEE 162
Query: 129 SFRVLKPGSRISVLDFN 145
RV+KPG +
Sbjct: 163 LARVVKPGGWVITATPG 179
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (119), Expect = 5e-08
Identities = 29/143 (20%), Positives = 41/143 (28%), Gaps = 13/143 (9%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94
VLDV CG+G LS ++ VIG+D S ++ + I +
Sbjct: 39 DKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMA---KELVELNGFSDKITLLR 93
Query: 95 GDALDLPF---SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF 151
G D+ + MGY L L L G I F
Sbjct: 94 GKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI----FPDKCSIH 149
Query: 152 TTAI-QEWMIDNVVVPVASGYGL 173
+ D + YG
Sbjct: 150 LAGLEDSQYKDEKLNYWQDVYGF 172
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 48.6 bits (115), Expect = 9e-08
Identities = 9/121 (7%), Positives = 31/121 (25%), Gaps = 5/121 (4%)
Query: 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 90
K +L + +G +++ V ++++ + I
Sbjct: 71 PIKRDSKILYLGASAGTTPSHVADIADKG-IVYAIEYAPRIMRELLDA----CAERENII 125
Query: 91 EWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 150
+ +++ + + ++ + LK G + +S
Sbjct: 126 PILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDV 185
Query: 151 F 151
Sbjct: 186 T 186
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 48.2 bits (114), Expect = 1e-07
Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%)
Query: 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 85
+ + + +LD G G S + E ++IG+D L +A + S
Sbjct: 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDR 73
Query: 86 CYKNIEW-VEGDALDLPFSDCFFDAITMGYGL---------RNVVDKRKALEESFRVLKP 135
E D L D I M G+ R + + ++ L+++ +L P
Sbjct: 74 VSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP 133
Query: 136 GSRISVLDFNKSTQP 150
G RI V+ F+
Sbjct: 134 GGRIVVISFHSLEDR 148
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 48.4 bits (114), Expect = 1e-07
Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 18/158 (11%)
Query: 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83
+ + W G G VL++ G+G + ++S VG +G V+ +++S+ +A +
Sbjct: 65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE--- 121
Query: 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143
+ +N+ +V GD +D I + G+ V E F LK G R+ V
Sbjct: 122 RLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 175
Query: 144 FNKSTQPFT---------TAIQEWMIDNVVVPVASGYG 172
K ++ + + ++ + G
Sbjct: 176 NLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNLG 213
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (115), Expect = 1e-07
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
Query: 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94
VLDV CG+G LS ++ KV+G+D S+ + + + I ++
Sbjct: 36 DKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEI---LYQAMDIIRLNKLEDTITLIK 90
Query: 95 GDALDLPFSDCFFDAI---TMGYGLRNVVDKRKALEESFRVLKPGSRI 139
G ++ D I MGY L L + L G +
Sbjct: 91 GKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSV 138
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 48.2 bits (114), Expect = 2e-07
Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 10/144 (6%)
Query: 15 SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM 74
F + +R+ + AK + V+D+ G G LS L V + KVI ++
Sbjct: 89 MFSPANVKERVRM-AKVAKPDELVVDMFAGIGHLS--LPIAVYGKAKVIAIEKDPYTFKF 145
Query: 75 ASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLK 134
+++ + D D P + D I MGY +R + + ++ + K
Sbjct: 146 L--VENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVVR----THEFIPKALSIAK 198
Query: 135 PGSRISVLDFNKSTQPFTTAIQEW 158
G+ I + + +
Sbjct: 199 DGAIIHYHNTVPEKLMPREPFETF 222
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 48.2 bits (113), Expect = 2e-07
Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 6/134 (4%)
Query: 11 NDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 70
+ + + VLD+ CG+G + L+E+ +V+GLD +
Sbjct: 18 RRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEE 74
Query: 71 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESF 130
L +A + + V A F + D RK +
Sbjct: 75 MLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVT--MFFSTIMYFDEEDLRKLFSKVA 132
Query: 131 RVLKPGSRISVLDF 144
LKPG + DF
Sbjct: 133 EALKPGGVF-ITDF 145
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 46.8 bits (110), Expect = 4e-07
Identities = 29/207 (14%), Positives = 71/207 (34%), Gaps = 13/207 (6%)
Query: 15 SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM 74
+F + M +++ N+L++ GD + L E + ++ S+ +S
Sbjct: 1 NFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISH 57
Query: 75 ASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE-SFRVL 133
A R + E +D I + + L ++ D L+ + L
Sbjct: 58 AQGRLKDGITYIHSRFED--------AQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWL 109
Query: 134 KPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 193
G R+ ++ N + A++ +I + + + Y ++ + L
Sbjct: 110 AEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 169
Query: 194 EKLALE-IGFSRAKHYELSGGLMGNLV 219
+ I F +++ L +++
Sbjct: 170 QVTYRSGIFFKALANFQWDQILQTDIL 196
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 44.4 bits (103), Expect = 3e-06
Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 16/189 (8%)
Query: 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92
K VLD+ CG G SFLL + + + +K+ N+E+
Sbjct: 36 KKRGKVLDLACGVGGFSFLLEDYGFEV-------VGVDISEDMIRKAREYAKSRESNVEF 88
Query: 93 VEGDALDLPFSDCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGSRISVLDFN----- 145
+ GDA L F D FD + + + ++ + +E RVLKP + + +
Sbjct: 89 IVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELL 148
Query: 146 KSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLAL-EIGFSR 204
+ Q++ I V+P + E++ + S R + L +
Sbjct: 149 PRLKESLVVGQKYWISK-VIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFT 207
Query: 205 AKHYELSGG 213
+ E G
Sbjct: 208 KEAEEKVGN 216
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 44.3 bits (103), Expect = 4e-06
Identities = 28/209 (13%), Positives = 55/209 (26%), Gaps = 22/209 (10%)
Query: 19 HRIWKRMAVSW--SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS 76
++ W + D+ LD+ CG+G+L+ L + + L +
Sbjct: 20 YKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENK 78
Query: 77 SRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG 136
R + C D+ + D +K + LK G
Sbjct: 79 FRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYII---DSDDLKKYFKAVSNHLKEG 135
Query: 137 SR--ISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG-------------LAEEYQYLK 181
+ + K +Q + D V + + E Y+
Sbjct: 136 GVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFD 195
Query: 182 SSIRE-FLTGKDLEKLALEIGFSRAKHYE 209
E +D+EK + +
Sbjct: 196 EEHEERAYKEEDIEKYLKHGQLNILDKVD 224
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 5e-06
Identities = 19/154 (12%), Positives = 31/154 (20%), Gaps = 37/154 (24%)
Query: 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD--------- 80
G GD ++D+ G L + + DF+
Sbjct: 47 PGGLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWT 104
Query: 81 ----------------------LVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 118
L + V P D + +
Sbjct: 105 PAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMEC 164
Query: 119 VV----DKRKALEESFRVLKPGSRISVLDFNKST 148
R AL +LKPG + +
Sbjct: 165 ACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP 198
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 43.4 bits (101), Expect = 6e-06
Identities = 32/207 (15%), Positives = 63/207 (30%), Gaps = 24/207 (11%)
Query: 11 NDLLSFGQHRIWKRMA--VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
+ L+S + ++ A WS + VLDV G+G + ++ + + ++ +
Sbjct: 59 DALMSCDEDLAYEAPADAYDWSAVRH---VLDVGGGNGGMLAAIALRA-PHLRGTLVELA 114
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
+R+ + EGD ++ + D L
Sbjct: 115 GP---AERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRG 171
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
R L+PG R+ VLD ++D ++ G
Sbjct: 172 CVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGG----RVR----------- 216
Query: 189 TGKDLEKLALEIGFSRAKHYELSGGLM 215
T ++ LA G + A +
Sbjct: 217 TRDEVVDLAGSAGLALASERTSGSTTL 243
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 43.2 bits (100), Expect = 9e-06
Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 7/144 (4%)
Query: 18 QHRIWKRMA---VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM 74
R + +A + LD+ G G + L + G + L+ + Q
Sbjct: 48 SLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVS--IDCLNIAPVQNKR 105
Query: 75 ASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLK 134
+ A +++ ++P D +D I + DK K +E RVLK
Sbjct: 106 NEEYNNQAGLADNITVKYGSFL--EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK 163
Query: 135 PGSRISVLDFNKSTQPFTTAIQEW 158
P +++ D K ++IQ
Sbjct: 164 PRGVMAITDPMKEDGIDKSSIQPI 187
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 41.6 bits (96), Expect = 3e-05
Identities = 32/204 (15%), Positives = 65/204 (31%), Gaps = 25/204 (12%)
Query: 11 NDLLSFGQHRIWKRMA--VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
+ LL+ Q + A W+ + VLDV G G + ++ + L+ +
Sbjct: 58 DSLLACDQDVAFDAPAAAYDWTNVRH---VLDVGGGKGGFAAAIARR-APHVSATVLEMA 113
Query: 69 KNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEE 128
+ ++R L + ++ VEGD + ++ D + L
Sbjct: 114 GT---VDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTR 170
Query: 129 SFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188
L+PG RI + + + + + D ++ G
Sbjct: 171 CAEALEPGGRILIHERDDLHENSFNEQFTEL-DLRMLVFLGGA---------------LR 214
Query: 189 TGKDLEKLALEIGFSRAKHYELSG 212
T + + LA G + +L
Sbjct: 215 TREKWDGLAASAGLVVEEVRQLPS 238
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 41.2 bits (95), Expect = 3e-05
Identities = 18/149 (12%), Positives = 37/149 (24%), Gaps = 24/149 (16%)
Query: 9 QLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFS 68
++N L + W + G VL CG LS Q V+G + S
Sbjct: 4 EVNKDL----QQYWSSL-----NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELS 51
Query: 69 KNQLSMASSRQ----------DLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 118
+ + + + D A W A +
Sbjct: 52 EAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIA 111
Query: 119 VVDK--RKALEESFRVLKPGSRISVLDFN 145
+ + ++ ++ ++
Sbjct: 112 LPADMRERYVQHLEALMPQACSGLLITLE 140
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 41.3 bits (95), Expect = 4e-05
Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 14/138 (10%)
Query: 9 QLNDLLSFG-QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDF 67
+ + + HR+ + K VLD+ G+G S +V+ +D
Sbjct: 18 SMYETPKWKLYHRLIGSFLEEY--LKNPCRVLDLGGGTGKWSL---FLQERGFEVVLVDP 72
Query: 68 SKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALE 127
SK L +A + S F + +G L V +K KA
Sbjct: 73 SKEMLEVAREKGVKNVVEAKAEDLP--------FPSGAFEAVLALGDVLSYVENKDKAFS 124
Query: 128 ESFRVLKPGSRISVLDFN 145
E RVL P + N
Sbjct: 125 EIRRVLVPDGLLIATVDN 142
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 39.2 bits (90), Expect = 1e-04
Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 5/107 (4%)
Query: 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97
LD+ CG+G S L+ V D + ++ + +
Sbjct: 34 TLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL 90
Query: 98 LDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144
D + M + + R KPG ++
Sbjct: 91 TFDGEYDFILSTVVMMF--LEAQTIPGLIANMQRCTKPGGYNLIVAA 135
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 5/126 (3%)
Query: 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81
R ++ LD G G ++ L ++ + L+ K+ L A
Sbjct: 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYAT--TDLLEPVKHMLEEAKRELAG 138
Query: 82 VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141
+ + + + D K + + L P I
Sbjct: 139 MPVGKFILASMETATLPPNTYDLIVIQWTAIYL---TDADFVKFFKHCQQALTPNGYIFF 195
Query: 142 LDFNKS 147
+ +
Sbjct: 196 KENCST 201
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 37.6 bits (86), Expect = 4e-04
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 8/116 (6%)
Query: 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97
++V G G +++Q IG+D K+ LS A + V K + D
Sbjct: 35 HVEVGSGKGAFVSGMAKQ-NPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL 93
Query: 98 LDLPFSDCFFDAITM-------GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146
D + + + L+ R+L I N+
Sbjct: 94 TDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR 149
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 8e-04
Identities = 15/147 (10%), Positives = 39/147 (26%), Gaps = 39/147 (26%)
Query: 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMA-------------- 75
+G +G ++D+ G L + + DF +
Sbjct: 50 TGEVSGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQEEPGAFNWS 107
Query: 76 ----------------SSRQDLVSKACYKNIEWV---EGDALDLPFSDCFFDAITMGYGL 116
++ + + + + DA+ + L
Sbjct: 108 MYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCL 167
Query: 117 ----RNVVDKRKALEESFRVLKPGSRI 139
++ ++AL+ +L+PG +
Sbjct: 168 EAVSPDLASFQRALDHITTLLRPGGHL 194
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Score = 36.6 bits (83), Expect = 0.001
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM 74
VS + A G VL+ C G E G+ + +G++ L +
Sbjct: 9 DFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL 59
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Score = 35.2 bits (80), Expect = 0.004
Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 17/129 (13%)
Query: 14 LSFGQHRIWKRM---AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN 70
+ G + + + G VL++ G G + L++E V KV+ ++ ++
Sbjct: 47 ILPGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEK 103
Query: 71 QLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESF 130
+ AS + Y NI+ + GD + +D + + ++ + +
Sbjct: 104 MYNYASKL-----LSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLC------KPY 152
Query: 131 RVLKPGSRI 139
LK G +
Sbjct: 153 EQLKEGGIM 161
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 35.0 bits (79), Expect = 0.004
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 5/158 (3%)
Query: 15 SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM 74
S+G+ ++ V D++LD+ CG G + L+++V S +
Sbjct: 33 SYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKE 92
Query: 75 ASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLK 134
+I V D + + IT + +EE +LK
Sbjct: 93 NIKLN----NLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLK 148
Query: 135 PGSRIS-VLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 171
I V+ + + +++ + V + GY
Sbjct: 149 DNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGY 186
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Score = 34.7 bits (79), Expect = 0.004
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 14/133 (10%)
Query: 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA 85
A+ + G +D G + + E+ G+VIGLD ++ A
Sbjct: 10 ALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLHLPGLTV 66
Query: 86 CYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKR---------KALEESFRVLKPG 136
N ++ L D I G+ + + LE++ VL PG
Sbjct: 67 VQGNFRHLKRHLAALGVER--VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG 124
Query: 137 SRISVLDFNKSTQ 149
R+ V+ F+
Sbjct: 125 GRLVVIAFHSLED 137
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 222 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.97 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.96 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.95 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.95 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.94 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.94 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.94 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.93 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.92 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.92 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.9 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.9 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.9 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.9 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.9 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.89 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.89 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.88 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.88 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.88 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.87 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.87 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.87 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.85 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.85 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.84 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.84 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.83 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.83 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.83 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.82 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.82 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.81 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.81 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.81 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.8 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.8 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.8 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.79 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.78 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.77 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.75 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.75 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.75 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.73 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.73 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.7 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.69 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.69 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.65 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.64 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.62 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.62 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.61 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.59 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.58 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.58 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.48 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.48 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.46 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.44 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.42 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.41 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.41 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.4 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.37 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.34 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.32 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.32 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.31 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.28 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.23 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.23 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.2 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.19 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 99.19 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.17 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.17 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 99.17 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.15 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 99.12 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 99.1 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 99.09 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 99.08 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.04 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.03 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 99.01 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.86 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.85 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.85 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.84 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.83 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.77 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.77 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.71 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.68 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.66 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.41 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.35 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.26 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.93 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.91 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.84 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.82 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.77 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 97.76 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.74 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.72 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.67 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.64 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.63 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.62 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.58 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.53 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.51 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.39 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.38 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.29 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.23 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.2 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.11 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.92 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.72 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 96.71 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.71 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.67 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.62 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.52 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.43 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.41 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.35 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.09 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.07 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.05 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.97 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.87 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.69 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.23 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.2 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 95.08 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.69 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.55 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 94.24 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.04 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.94 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.7 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 93.43 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.15 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 93.11 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 93.07 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 91.88 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 91.2 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 90.99 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 90.68 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 90.23 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 90.0 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 89.92 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.76 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 89.29 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 89.24 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 89.17 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 88.59 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 88.05 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 87.47 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 87.26 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 86.97 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 86.91 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 86.9 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 86.58 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 85.87 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.46 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 85.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 84.92 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 84.8 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 84.54 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 84.32 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 83.29 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 82.97 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 82.44 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 82.31 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 82.17 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 81.64 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 81.64 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 81.61 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 81.51 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 81.06 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.99 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 80.8 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.97 E-value=1.5e-29 Score=185.12 Aligned_cols=164 Identities=21% Similarity=0.311 Sum_probs=132.8
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+++..+..++.+|||||||+|.++..+++. +.+++|+|+|+++++.|+++....+. +++.+.++|+++++++
T Consensus 5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~---~~i~~~~~d~~~l~~~ 78 (231)
T d1vl5a_ 5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGH---QQVEYVQGDAEQMPFT 78 (231)
T ss_dssp HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCC-CCCSC
T ss_pred HHHHHhcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhccccccc---cccccccccccccccc
Confidence 34667788899999999999999999999876 35899999999999999988755443 6899999999999988
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+++||+|++..+++|++++..+++++.++|||||++++.++..+..........+... .....
T Consensus 79 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 141 (231)
T d1vl5a_ 79 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEK-----------------ERDYS 141 (231)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHH-----------------HHCTT
T ss_pred ccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHh-----------------hcccC
Confidence 8999999999999999999999999999999999999998877665444433322211 11112
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
+.+.++.+++.++++++||++++...+
T Consensus 142 ~~~~~~~~~~~~~l~~aGf~~~~~~~~ 168 (231)
T d1vl5a_ 142 HHRAWKKSDWLKMLEEAGFELEELHCF 168 (231)
T ss_dssp CCCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 335678899999999999998876544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.96 E-value=8.3e-29 Score=181.36 Aligned_cols=164 Identities=23% Similarity=0.308 Sum_probs=134.2
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+.+....+|+.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++....+. +++.+.++|+++++++
T Consensus 6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~---~~~v~gvD~S~~~l~~A~~~~~~~~~---~~~~~~~~d~~~~~~~ 79 (234)
T d1xxla_ 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPY---VQECIGVDATKEMVEVASSFAQEKGV---ENVRFQQGTAESLPFP 79 (234)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHHTC---CSEEEEECBTTBCCSC
T ss_pred HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh---CCeEEEEeCChhhhhhhhhhhccccc---cccccccccccccccc
Confidence 45677888999999999999999999999976 35899999999999999998765433 5899999999999998
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+++||+|+|.++++|++++..++++++++|||||++++.++..+..+....+...+. ......
T Consensus 80 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 142 (234)
T d1xxla_ 80 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLN-----------------RLRDPS 142 (234)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHH-----------------HHHCTT
T ss_pred ccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHH-----------------hhCCCc
Confidence 899999999999999999999999999999999999999887766554443322221 011122
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
+.+.++..++..+++++||.+.....+
T Consensus 143 ~~~~~~~~~~~~~~~~~gf~~~~~~~~ 169 (234)
T d1xxla_ 143 HVRESSLSEWQAMFSANQLAYQDIQKW 169 (234)
T ss_dssp CCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHCCCceeEEEEe
Confidence 334568899999999999988765544
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.95 E-value=1.1e-26 Score=169.05 Aligned_cols=183 Identities=14% Similarity=0.194 Sum_probs=131.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
.+++.+|||+|||+|..+..+++... ++.+|+|+|+|++|++.|+++....... .++.+...|..+.+. .++|+|
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~--~~~~~~~~d~~~~~~--~~~d~i 112 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE--IPVEILCNDIRHVEI--KNASMV 112 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS--SCEEEECSCTTTCCC--CSEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc--chhhhccchhhcccc--ccceee
Confidence 46788999999999999999998643 5679999999999999999987644322 567888888877653 568999
Q ss_pred EEcccccCc--ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhH-HHHHHhhcccccccccCChhH-HHHHh-HHhHh
Q 027517 111 TMGYGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTA-IQEWMIDNVVVPVASGYGLAE-EYQYL-KSSIR 185 (222)
Q Consensus 111 ~~~~~l~~~--~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~ 185 (222)
+++.++|++ +++.+++++++++|||||.+++.++..+..+.... ...++..-.. ..++.... ..... ..+..
T Consensus 113 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 189 (225)
T d1im8a_ 113 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKR---ANGYSELEVSQKRTALENVM 189 (225)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHH---HTTGGGSTTHHHHHHHHHHC
T ss_pred EEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHH---HcCCCHHHHHHHHHHhhccc
Confidence 999999998 47789999999999999999999988766654322 1111111000 00100000 11111 12334
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
..++.+++.++|+++||+.++++ +....+..++|+|
T Consensus 190 ~~~s~~~~~~~L~~aGF~~v~~~-~~~~~f~~~~a~k 225 (225)
T d1im8a_ 190 RTDSIETHKVRLKNVGFSQVELW-FQCFNFGSMIAVK 225 (225)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEE-EEETTEEEEEEEC
T ss_pred CCCCHHHHHHHHHHcCCCceEEe-eeeCceEEEEEEC
Confidence 56799999999999999999876 3445577888887
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.95 E-value=3.8e-27 Score=176.99 Aligned_cols=161 Identities=20% Similarity=0.181 Sum_probs=129.6
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCc
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 106 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (222)
......+++.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.++++....+.. .++++.++|+.++++++++
T Consensus 60 ~~~~~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~--~~v~~~~~d~~~l~~~~~s 135 (282)
T d2o57a1 60 AMTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLA--DNITVKYGSFLEIPCEDNS 135 (282)
T ss_dssp HHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCT--TTEEEEECCTTSCSSCTTC
T ss_pred HHhcCCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhccccccccc--ccccccccccccccccccc
Confidence 334467889999999999999999999875 568999999999999999987665433 6899999999999988899
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhh
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 186 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (222)
||+|++..+++|++++..++++++++|||||++++.++.............+... .....
T Consensus 136 fD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 195 (282)
T d2o57a1 136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDR--------------------IKLHD 195 (282)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHH--------------------HTCSS
T ss_pred cchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHH--------------------hccCC
Confidence 9999999999999999999999999999999999988765443322222222110 01123
Q ss_pred cCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 187 FLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 187 ~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
+.+.+++.++++++||+.+.....+
T Consensus 196 ~~s~~~~~~~l~~~Gf~~i~~~d~~ 220 (282)
T d2o57a1 196 MGSLGLYRSLAKECGLVTLRTFSRP 220 (282)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred CCCHHHHHHHHHHcCCceEEEEECc
Confidence 5688999999999999998877654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=3e-26 Score=168.72 Aligned_cols=162 Identities=19% Similarity=0.131 Sum_probs=129.8
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
+.+.+.++..|+.+|||||||+|..+..+++.. +++++|+|+|+.+++.++++....+.+ +++++.++|+.++ .+
T Consensus 23 ~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~--~~v~~~~~d~~~~-~~ 97 (245)
T d1nkva_ 23 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVS--ERVHFIHNDAAGY-VA 97 (245)
T ss_dssp HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEESCCTTC-CC
T ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhcc--ccchhhhhHHhhc-cc
Confidence 567788889999999999999999999998874 469999999999999999987655433 5799999999987 35
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+++||+|++..+++|++++..++++++++|||||++++.++.....+........+. ...
T Consensus 98 ~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~--------------------~~~ 157 (245)
T d1nkva_ 98 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACG--------------------VSS 157 (245)
T ss_dssp SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTT--------------------CSC
T ss_pred cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhc--------------------cCC
Confidence 678999999999999999999999999999999999998876544333222222111 011
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
...+.+..++...++++||+++.....
T Consensus 158 ~~~~~~~~~~~~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 158 TSDFLTLPGLVGAFDDLGYDVVEMVLA 184 (245)
T ss_dssp GGGSCCHHHHHHHHHTTTBCCCEEEEC
T ss_pred CcccCCHHHHHHHHHHcCCEEEEEEeC
Confidence 224568889999999999998876543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=1.9e-26 Score=165.79 Aligned_cols=142 Identities=23% Similarity=0.285 Sum_probs=111.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||||||+|.++..+. +++|+|+|+.+++.++++ ++.++++|++++++++++||+|++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~----------~~~~~~~d~~~l~~~~~~fD~I~~ 97 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALM 97 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEE
T ss_pred CCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc----------cccccccccccccccccccccccc
Confidence 456689999999999887663 568999999999998864 689999999999988889999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
.++++|++++..++++++++|+|||.+++.++...... ........... ....+.+++|.++
T Consensus 98 ~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-----~~~~~~~~~~~-------------~~~~~~~~~s~~~ 159 (208)
T d1vlma_ 98 VTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFL-----GREYEKNKEKS-------------VFYKNARFFSTEE 159 (208)
T ss_dssp ESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHH-----HHHHHHTTTC--------------CCSTTCCCCCHHH
T ss_pred ccccccccccccchhhhhhcCCCCceEEEEecCCcchh-----HHhhhhccccc-------------cccccccCCCHHH
Confidence 99999999999999999999999999999887654311 11111000000 0012235689999
Q ss_pred HHHHHHHcCCeEEEEee
Q 027517 193 LEKLALEIGFSRAKHYE 209 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~ 209 (222)
+.++|+++||+++++..
T Consensus 160 l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 160 LMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHcCCeEEEEEE
Confidence 99999999999887664
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-26 Score=168.41 Aligned_cols=149 Identities=14% Similarity=0.101 Sum_probs=118.9
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
...++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.|+++....+. .++++.++|++++++++++||+|
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~---~~~~f~~~d~~~~~~~~~~fD~I 131 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK---RVRNYFCCGLQDFTPEPDSYDVI 131 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG---GEEEEEECCGGGCCCCSSCEEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhccccccccccc---ccccccccccccccccccccccc
Confidence 45667899999999999999887553 34899999999999999998765433 47899999999988878899999
Q ss_pred EEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcC
Q 027517 111 TMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188 (222)
Q Consensus 111 ~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (222)
++..+++|+++. ..++++++++|+|||.+++.+............ .....+
T Consensus 132 ~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~---------------------------~~~~~~ 184 (222)
T d2ex4a1 132 WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDV---------------------------DSSVCR 184 (222)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETT---------------------------TTEEEE
T ss_pred ccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccC---------------------------CceeeC
Confidence 999999999764 579999999999999999987665443211100 011245
Q ss_pred CHHHHHHHHHHcCCeEEEEeeec
Q 027517 189 TGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 189 ~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
+.+++.++++++||++++.....
T Consensus 185 ~~~~~~~l~~~aGf~ii~~~~q~ 207 (222)
T d2ex4a1 185 DLDVVRRIICSAGLSLLAEERQE 207 (222)
T ss_dssp BHHHHHHHHHHTTCCEEEEEECC
T ss_pred CHHHHHHHHHHcCCEEEEEEEeC
Confidence 88999999999999999877643
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.93 E-value=1.5e-24 Score=160.07 Aligned_cols=167 Identities=19% Similarity=0.174 Sum_probs=125.2
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+...+...+..+|||||||+|..+..+++.+ ++.+++++|+ +++++.++++....+.. .++.++.+|+.+. .+
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~--~rv~~~~~D~~~~-~~ 144 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLS--DRVDVVEGDFFEP-LP 144 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCT--TTEEEEECCTTSC-CS
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcc--cchhhccccchhh-cc
Confidence 445566677778899999999999999999985 7789999998 77899998887654432 6899999998763 23
Q ss_pred CCceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 104 DCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
.+||+|++.+++|++++. .++|++++++|||||++++.+................. ...+.
T Consensus 145 -~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~d----------------l~~~~ 207 (253)
T d1tw3a2 145 -RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELD----------------LRMLV 207 (253)
T ss_dssp -SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHH----------------HHHHH
T ss_pred -cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhh----------------HHHHh
Confidence 569999999999999764 57899999999999999998876433222111111110 11111
Q ss_pred HhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 182 SSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
......+|.++|.++++++||+++++...+.
T Consensus 208 ~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~ 238 (253)
T d1tw3a2 208 FLGGALRTREKWDGLAASAGLVVEEVRQLPS 238 (253)
T ss_dssp HHSCCCCBHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred hCCCcCCCHHHHHHHHHHCCCeEEEEEECCC
Confidence 1122456899999999999999999887754
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.92 E-value=5.9e-25 Score=162.06 Aligned_cols=156 Identities=14% Similarity=0.070 Sum_probs=122.0
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
..+.+++.+...+..+|||+|||+|..+..++... ..+|+++|+++.+++.|+++.... +++.+.+.|+.+++
T Consensus 81 ~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~--~~~v~~vD~s~~~l~~a~~~~~~~-----~~~~~~~~d~~~~~ 153 (254)
T d1xtpa_ 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETAT 153 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCC
T ss_pred HHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhc--CceEEEEcCCHHHHHhhhcccccc-----ccceeEEccccccc
Confidence 34456666666778899999999999999888764 338999999999999999886432 46899999999988
Q ss_pred CCCCceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 102 FSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
+++++||+|++..+++|+++. ..++++++++|+|||.+++.+........... .
T Consensus 154 ~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d-----------~------------- 209 (254)
T d1xtpa_ 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD-----------K------------- 209 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE-----------T-------------
T ss_pred cCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceec-----------c-------------
Confidence 877899999999999999764 57899999999999999998765433211000 0
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
......++.++++++++++||++++....
T Consensus 210 --~d~~~~rs~~~~~~l~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 210 --EDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp --TTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred --cCCceeCCHHHHHHHHHHcCCEEEEEEee
Confidence 00112458899999999999999987764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.92 E-value=1.5e-24 Score=157.54 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=117.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+|||||||+|.++..+++. +.+|+|+|+|+++++.++++.. .++.++.+|+.+.++ +++||+|+
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~-------~~~~~~~~~~~~~~~-~~~fD~I~ 86 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK-------DGITYIHSRFEDAQL-PRRYDNIV 86 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGCCC-SSCEEEEE
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc-------ccccccccccccccc-cccccccc
Confidence 345668999999999999998865 4589999999999999987752 479999999988765 47899999
Q ss_pred EcccccCcccHHHHHHHHh-cccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCH
Q 027517 112 MGYGLRNVVDKRKALEESF-RVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~-~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (222)
+..+++|++++..++++++ ++|+|||.+++..++.... ......+.. ....... ... ......+.+.++.
T Consensus 87 ~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~--~~~~~~~~~---~~~~~~~--~~~--~~~~~~h~~~~~~ 157 (225)
T d2p7ia1 87 LTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAV--SRQIAVKMG---IISHNSA--VTE--AEFAHGHRCTYAL 157 (225)
T ss_dssp EESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCH--HHHHHHHTT---SSSSTTC--CCH--HHHHTTCCCCCCH
T ss_pred ccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccH--HHHHHHHhh---hhhhhhh--cCc--cccceeeeeccCH
Confidence 9999999999999999998 7899999999987764331 111111110 0000000 001 1112234567899
Q ss_pred HHHHHHHHHcCCeEEEEee
Q 027517 191 KDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 191 ~~~~~~l~~~Gf~~~~~~~ 209 (222)
++++++++++||++++...
T Consensus 158 ~~l~~~l~~~Gf~i~~~~~ 176 (225)
T d2p7ia1 158 DTLERDASRAGLQVTYRSG 176 (225)
T ss_dssp HHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEE
Confidence 9999999999999988654
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.90 E-value=1.2e-22 Score=149.78 Aligned_cols=167 Identities=19% Similarity=0.178 Sum_probs=122.7
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+++.+..++..+|||||||+|.++..+++++ |+.+++++|+ +++++.++++....+.. .++.+..+|..+ +.+
T Consensus 72 ~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~--~ri~~~~~d~~~-~~p- 145 (256)
T d1qzza2 72 APADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLA--DRVTVAEGDFFK-PLP- 145 (256)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT--TTEEEEECCTTS-CCS-
T ss_pred HHHhcCCCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCc--ceeeeeeeeccc-ccc-
Confidence 34455566777899999999999999999995 7889999997 88899998887654433 689999999876 333
Q ss_pred CceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchh-hHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 105 CFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
..||+|++.+++|++++. .++|+++++.|||||+++|.+...+..... ......+. ...+.
T Consensus 146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d----------------~~ml~ 209 (256)
T d1qzza2 146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLD----------------LRMLT 209 (256)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHH----------------HHHHH
T ss_pred ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHH----------------HHHHh
Confidence 459999999999999754 578999999999999999998653322111 11111111 11111
Q ss_pred HhHhhcCCHHHHHHHHHHcCCeEEEEeeecCC
Q 027517 182 SSIREFLTGKDLEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
......+|.++|.++++++||++++.......
T Consensus 210 ~~~g~~rt~~e~~~ll~~AGf~~~~~~~~~~~ 241 (256)
T d1qzza2 210 FMGGRVRTRDEVVDLAGSAGLALASERTSGST 241 (256)
T ss_dssp HHSCCCCCHHHHHHHHHTTTEEEEEEEEECCS
T ss_pred hCCCccCCHHHHHHHHHHCCCceeEEEEeCCc
Confidence 12234578999999999999999998876543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.90 E-value=1.3e-23 Score=154.57 Aligned_cols=116 Identities=22% Similarity=0.242 Sum_probs=92.1
Q ss_pred hHHHHHHHHhhC--CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 20 RIWKRMAVSWSG--AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 20 ~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
..|...+.+.+. ..++.+|||+|||+|..+..+++. +.+++|+|+|+.|++.|+++....+ .+++++++|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~----~~v~~~~~d~ 93 (246)
T d1y8ca_ 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQG----LKPRLACQDI 93 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTT----CCCEEECCCG
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccC----ccceeeccch
Confidence 444455544432 244579999999999999999976 4589999999999999998875433 4799999999
Q ss_pred CCcCCCCCceeEEEEc-ccccCcc---cHHHHHHHHhcccCCCcEEEEEe
Q 027517 98 LDLPFSDCFFDAITMG-YGLRNVV---DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 98 ~~~~~~~~~~D~v~~~-~~l~~~~---~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+++.+ ++||+|+|. .+++|+. ++.+++++++++|+|||.+++..
T Consensus 94 ~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 94 SNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 988764 689999975 5677764 56779999999999999998743
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.90 E-value=1.8e-22 Score=150.54 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=127.0
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
.+.+.+.+...++.+|||||||.|.++.++++.. +++++|+++|+++++.++++....+.. .++.+...|...
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~--~~v~~~~~d~~~--- 122 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSP--RRKEVRIQGWEE--- 122 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCS--SCEEEEECCGGG---
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccc--hhhhhhhhcccc---
Confidence 3456777889999999999999999999999886 569999999999999999987755433 567777777543
Q ss_pred CCCceeEEEEcccccCccc---------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhH-----------HHHHHhhc
Q 027517 103 SDCFFDAITMGYGLRNVVD---------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTA-----------IQEWMIDN 162 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~---------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~-----------~~~~~~~~ 162 (222)
.+++||.|++..+++|+++ ...+++++.++|||||++++.++..+....... ...|+...
T Consensus 123 ~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~ky 202 (291)
T d1kpia_ 123 FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE 202 (291)
T ss_dssp CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHH
Confidence 3578999999999999965 478999999999999999998887654322111 01111110
Q ss_pred ccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCC
Q 027517 163 VVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
.. +...+.|..++...++++||++.....+..+
T Consensus 203 iF------------------pgg~lps~~~~~~~~e~~gl~v~~~~~~~~h 235 (291)
T d1kpia_ 203 IF------------------PGGRLPRISQVDYYSSNAGWKVERYHRIGAN 235 (291)
T ss_dssp TC------------------TTCCCCCHHHHHHHHHHHTCEEEEEEECGGG
T ss_pred hc------------------CCCCCCCHHHHHhhhcccccccceeeecccc
Confidence 00 1123568899999999999999988776544
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.90 E-value=7.7e-23 Score=152.99 Aligned_cols=110 Identities=21% Similarity=0.307 Sum_probs=97.5
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
...++.+|||+|||+|..+..+++.++.+.+|+|+|+|+.+++.|+++....+ .++.+.+.|+.+++++ ++||+|
T Consensus 24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~----~~~~f~~~d~~~~~~~-~~fD~v 98 (281)
T d2gh1a1 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIELN-DKYDIA 98 (281)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS----SEEEEEESCTTTCCCS-SCEEEE
T ss_pred ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc----cccccccccccccccc-CCceEE
Confidence 55677899999999999999999887656789999999999999998875543 4789999999988765 579999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++..+++|++++..++++++++|||||.+++.++.
T Consensus 99 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 99 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 99999999999999999999999999999998854
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.90 E-value=5.8e-23 Score=149.09 Aligned_cols=107 Identities=30% Similarity=0.477 Sum_probs=94.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.++..+|||||||+|.++..+++. +.+++|+|+|+++++.|+++..... .++.+++.|+.++++++++||+|+
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~----~~~~~~~~d~~~l~~~~~~fD~I~ 107 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFEDKTFDYVI 107 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTSCCSCTTCEEEEE
T ss_pred cCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhcccc----ccccccccccccccccCcCceEEE
Confidence 357789999999999999999865 5689999999999999998875443 478889999999998889999999
Q ss_pred EcccccCcc--cHHHHHHHHhcccCCCcEEEEEecC
Q 027517 112 MGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 112 ~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+..+++|++ ++.++++++.++|||||++++...+
T Consensus 108 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 108 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 999999996 6778999999999999999887654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=3.8e-22 Score=148.40 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=126.4
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+.+.+...|+.+|||||||.|..+.++++.. +++|+|+++|+++++.++++....+.. .++.+...|..+++
T Consensus 52 ~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~--~~v~~~~~d~~~~~-- 125 (285)
T d1kpga_ 52 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENL--RSKRVLLAGWEQFD-- 125 (285)
T ss_dssp HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCC--SCEEEEESCGGGCC--
T ss_pred HHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhh--hhhHHHHhhhhccc--
Confidence 456677788999999999999999999999986 579999999999999999987655433 68899999987764
Q ss_pred CCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhh-----------HHHHHHhhccccccccc
Q 027517 104 DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTT-----------AIQEWMIDNVVVPVASG 170 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 170 (222)
++||.|++..+++|+. +...+++++.++|||||++++.++......... ....|+.....
T Consensus 126 -~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiF------ 198 (285)
T d1kpga_ 126 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIF------ 198 (285)
T ss_dssp -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTS------
T ss_pred -ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhc------
Confidence 5799999999999994 558999999999999999999877643221110 00111111000
Q ss_pred CChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 171 YGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
+...+.+..++..+++++||++.++..+..
T Consensus 199 ------------pgg~lPsl~~~~~~~e~agf~v~~~~~~~~ 228 (285)
T d1kpga_ 199 ------------PGGRLPSIPMVQECASANGFTVTRVQSLQP 228 (285)
T ss_dssp ------------TTCCCCCHHHHHHHHHTTTCEEEEEEECHH
T ss_pred ------------cCCCCCChhhHHHHHHHhchhhcccccchh
Confidence 012356889999999999999998876643
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=2.1e-22 Score=149.87 Aligned_cols=171 Identities=16% Similarity=0.140 Sum_probs=122.6
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
+.+++.+...|+.+|||||||.|.++..+++.. +.+|+|+|+|+++++.++++....+.. .++.+...|..++
T Consensus 42 ~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~--~~~~~~~~d~~~~--- 114 (280)
T d2fk8a1 42 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTN--RSRQVLLQGWEDF--- 114 (280)
T ss_dssp HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCS--SCEEEEESCGGGC---
T ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccc--cchhhhhhhhhhh---
Confidence 456667788999999999999999999999885 569999999999999999988665432 4677777776655
Q ss_pred CCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 104 DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
+++||.|++..+++|+.+ ...+++++.++|||||++++.+................... ......++.
T Consensus 115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~----------~~~~~dfI~ 184 (280)
T d2fk8a1 115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFE----------TARFIKFIV 184 (280)
T ss_dssp CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHH----------HHHHHHHHH
T ss_pred ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccc----------cccccchhh
Confidence 367999999999999954 58999999999999999999776543321111000000000 000000111
Q ss_pred H---hHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 182 S---SIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 182 ~---~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
. +...+.|.+++...++++||++.+...+.
T Consensus 185 kyifPgg~lPS~~~l~~~~e~aGf~v~~~~~~~ 217 (280)
T d2fk8a1 185 TEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLR 217 (280)
T ss_dssp HHTSTTCCCCCHHHHHHHHHHTTCBCCCCEECH
T ss_pred hhccCCCcccchHhhhhhHHhhccccceeeecc
Confidence 1 11135688999999999999998876553
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=1.8e-22 Score=148.26 Aligned_cols=102 Identities=34% Similarity=0.345 Sum_probs=88.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.+++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+++. ...++.+|+.++++++++||+|+
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~---------~~~~~~~~~~~l~~~~~~fD~ii 107 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG---------VKNVVEAKAEDLPFPSGAFEAVL 107 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT---------CSCEEECCTTSCCSCTTCEEEEE
T ss_pred cCCCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc---------cccccccccccccccccccccee
Confidence 346779999999999999999865 569999999999999999863 23467889999998889999999
Q ss_pred Ec-ccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 112 MG-YGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 112 ~~-~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+. .++||++++.++++++.++|||||.+++..++
T Consensus 108 ~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 108 ALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp ECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 85 67899999999999999999999999987654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.88 E-value=1.1e-21 Score=139.44 Aligned_cols=107 Identities=19% Similarity=0.157 Sum_probs=91.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||||||+|..+..++++ +.+++++|+|+.+++.++++....+. +++.+...|+.+.+. +++||+|++
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~d~~~~~~-~~~fD~I~~ 101 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGL---DNLQTDLVDLNTLTF-DGEYDFILS 101 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC---TTEEEEECCTTTCCC-CCCEEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccc---cchhhhheecccccc-cccccEEEE
Confidence 34459999999999999999976 56999999999999999988754433 578999999988765 468999999
Q ss_pred cccccCccc--HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 113 GYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 113 ~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
..+++|+++ ...+++++.++|+|||++++.+...
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 999999964 5689999999999999999877654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.88 E-value=2.7e-21 Score=140.81 Aligned_cols=171 Identities=20% Similarity=0.165 Sum_probs=124.7
Q ss_pred HHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 25 MAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 25 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
.+.+... .+...+|||||||+|.++..+++++ |+.+++.+|. |+.++.+... .++++..+|+.+ +.|
T Consensus 71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~~~~~---------~ri~~~~gd~~~-~~p 138 (244)
T d1fp1d2 71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPPL---------SGIEHVGGDMFA-SVP 138 (244)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC---------TTEEEEECCTTT-CCC
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhhhccCCC---------CCeEEecCCccc-ccc
Confidence 3444444 4566799999999999999999995 7889999997 5555433322 689999999876 333
Q ss_pred CCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 104 DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
..|++++.+++|++++ ..++|+++++.|+|||+++|.+...+............. .-+..++.
T Consensus 139 --~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~-------------~~d~~m~~ 203 (244)
T d1fp1d2 139 --QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVS-------------TLDNLMFI 203 (244)
T ss_dssp --CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHH-------------HHHHHHHH
T ss_pred --cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHH-------------HHHHHHHh
Confidence 4699999999999976 568899999999999999999976544322111111100 00011111
Q ss_pred HhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 182 SSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
....+.+|.+||.++++++||+.+++.....+.+.++.++|
T Consensus 204 ~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~viE~~K 244 (244)
T d1fp1d2 204 TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 244 (244)
T ss_dssp HHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred hCCCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEEEEeC
Confidence 12234568999999999999999999888778888999987
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.87 E-value=2.2e-21 Score=140.13 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=114.2
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCce
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFF 107 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~ 107 (222)
.++..|+.+|||+|||+|..+.++++.. +++.|+++|+|+.+++.++++.... +++..+..|..... ..+..+
T Consensus 69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~ 142 (230)
T d1g8sa_ 69 VMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANIVE 142 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTTCC
T ss_pred hCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhh-----cccceEEEeeccCcccccccc
Confidence 4567899999999999999999999984 6779999999999999998876543 58888888887643 344567
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhc
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREF 187 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (222)
|++++...+++.++...++.++++.|||||.+++............. .
T Consensus 143 ~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~--------------------------------~ 190 (230)
T d1g8sa_ 143 KVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP--------------------------------K 190 (230)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH--------------------------------H
T ss_pred eeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCH--------------------------------H
Confidence 88787788888888999999999999999999887654322110000 0
Q ss_pred CCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 188 LTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 188 ~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
...++..+.|+++||++++..++..
T Consensus 191 ~~~~e~~~~L~~aGF~ive~idL~p 215 (230)
T d1g8sa_ 191 EIFKEQKEILEAGGFKIVDEVDIEP 215 (230)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEECTT
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 0125778999999999999887754
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.87 E-value=1e-21 Score=144.69 Aligned_cols=113 Identities=28% Similarity=0.392 Sum_probs=93.2
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+.......+..+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++..... .++.+.++|+++++++
T Consensus 31 ~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~----~~i~~~~~d~~~l~~~ 103 (251)
T d1wzna1 31 EEIFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERN----LKIEFLQGDVLEIAFK 103 (251)
T ss_dssp HHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT----CCCEEEESCGGGCCCC
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeecccccccccccccccc----ccchheehhhhhcccc
Confidence 33444455667789999999999999999976 4689999999999999999875433 4799999999998876
Q ss_pred CCceeEEEEc-ccccCc--ccHHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMG-YGLRNV--VDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~-~~l~~~--~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
++||+|+|. .+++|+ ++...+|++++++|||||++++...
T Consensus 104 -~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 104 -NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp -SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 579999986 466666 4567899999999999999988543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.87 E-value=9.3e-22 Score=145.00 Aligned_cols=110 Identities=21% Similarity=0.296 Sum_probs=90.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCCceeEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAI 110 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v 110 (222)
.+++.+|||+|||+|..+..+++. ...+|+|+|+|+.+++.|+++....+.. .++.+.++|+...++ .+++||+|
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~--~~v~f~~~D~~~~~~~~~~~fD~V 97 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRR--FKVFFRAQDSYGRHMDLGKEFDVI 97 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCS--SEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCC--cceEEEEcchhhhcccccccceEE
Confidence 467889999999999999998876 2347999999999999999886543321 478999999977654 35689999
Q ss_pred EEcccccCcc----cHHHHHHHHhcccCCCcEEEEEecC
Q 027517 111 TMGYGLRNVV----DKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 111 ~~~~~l~~~~----~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+|.+++||+. +...+++++.++|||||.+++..+.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 9999999983 3467899999999999999887654
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.2e-21 Score=145.12 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=108.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhC---C--CCcEEEEeCChhHHHHHhcchhhhhhhcCCCee--EEeCCCCC------
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVG---S--QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIE--WVEGDALD------ 99 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~---~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~d~~~------ 99 (222)
++..+|||+|||+|..+..+++.+. + ...++++|+|+.+++.++++....... +++. +...++.+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL--ENVKFAWHKETSSEYQSRML 116 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC--TTEEEEEECSCHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc--ccccccchhhhhhhhcchhc
Confidence 4445899999999999888766531 1 236899999999999999887543211 2333 34444432
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
.+.++++||+|++.++++|++++..++++++++|+|||.+++..+.... .+...+..... ..
T Consensus 117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~-~~~~l~~~~~~-~~---------------- 178 (280)
T d1jqea_ 117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS-GWDKLWKKYGS-RF---------------- 178 (280)
T ss_dssp TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS-HHHHHHHHHGG-GS----------------
T ss_pred ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc-hHHHHHHHHHH-hc----------------
Confidence 2345678999999999999999999999999999999999988776433 22222211111 00
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEEE
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAKH 207 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 207 (222)
........++.+++.++|++.||..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 179 PQDDLCQYITSDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp CCCTTSCCCCHHHHHHHHHHHTCCEEEE
T ss_pred CCCcccccCCHHHHHHHHHHCCCceEEE
Confidence 0011234578899999999999986543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=8.5e-22 Score=145.67 Aligned_cols=150 Identities=16% Similarity=0.122 Sum_probs=104.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcC-------------------------
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACY------------------------- 87 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~------------------------- 87 (222)
.++.+|||+|||+|..+..++.. ...+|+|+|+|+.+++.++++.........
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 45679999999999988766654 233799999999999999987643221000
Q ss_pred -CCe-eEEeCCC----CCcCCCCCceeEEEEcccccCcc----cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHH
Q 027517 88 -KNI-EWVEGDA----LDLPFSDCFFDAITMGYGLRNVV----DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQE 157 (222)
Q Consensus 88 -~~i-~~~~~d~----~~~~~~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~ 157 (222)
..+ .....+. ...+.+.++||+|++.+++||+. +...+++++.+.|||||.+++.++.........
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~---- 203 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVG---- 203 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET----
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceec----
Confidence 001 1111111 12245567899999999999984 567899999999999999999887643321000
Q ss_pred HHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 158 WMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
. .......++.+++.++|+++||+++++...
T Consensus 204 ----------~------------~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 204 ----------K------------REFSCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp ----------T------------EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----------c------------ccccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 0 001123578999999999999999887544
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.84 E-value=1.1e-20 Score=138.19 Aligned_cols=117 Identities=22% Similarity=0.240 Sum_probs=103.5
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..++..+...|+.+|||+|||+|.++..+++.+++.++++++|+++++++.|++++.........++.+.+.|+.+.+++
T Consensus 86 s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~ 165 (264)
T d1i9ga_ 86 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP 165 (264)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred HHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc
Confidence 46777889999999999999999999999999989999999999999999999988765433347899999999988888
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+++||.|++ +++++..++.+++++|||||++++..++
T Consensus 166 ~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 166 DGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp TTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCc
Confidence 889999987 6788899999999999999999876544
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=2.2e-20 Score=136.52 Aligned_cols=137 Identities=20% Similarity=0.195 Sum_probs=106.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++....+ -++.+.++|+.+. .+.++||+|+
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~----~~~~~~~~d~~~~-~~~~~fD~V~ 189 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNG----VRPRFLEGSLEAA-LPFGPFDLLV 189 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTT----CCCEEEESCHHHH-GGGCCEEEEE
T ss_pred cCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcC----CceeEEecccccc-ccccccchhh
Confidence 467889999999999999877754 4689999999999999999886654 3567888887653 3457899999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHH
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 191 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (222)
++...+ ....+++.++++|||||+++++.+.. ...+
T Consensus 190 ani~~~---~l~~l~~~~~~~LkpGG~lilSgil~-----------------------------------------~~~~ 225 (254)
T d2nxca1 190 ANLYAE---LHAALAPRYREALVPGGRALLTGILK-----------------------------------------DRAP 225 (254)
T ss_dssp EECCHH---HHHHHHHHHHHHEEEEEEEEEEEEEG-----------------------------------------GGHH
T ss_pred hccccc---cHHHHHHHHHHhcCCCcEEEEEecch-----------------------------------------hhHH
Confidence 975443 34677889999999999999865321 0235
Q ss_pred HHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 192 DLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 192 ~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
++.+.++++||++++...... |..++.+|
T Consensus 226 ~v~~~~~~~Gf~~~~~~~~~~--Wv~l~~~r 254 (254)
T d2nxca1 226 LVREAMAGAGFRPLEEAAEGE--WVLLAYGR 254 (254)
T ss_dssp HHHHHHHHTTCEEEEEEEETT--EEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEEECC--EEEEEEeC
Confidence 788999999999988775443 66666665
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=7.9e-20 Score=132.65 Aligned_cols=126 Identities=20% Similarity=0.209 Sum_probs=101.4
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh--------------h
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--------------K 84 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--------------~ 84 (222)
+..+.+.+.+.+...++.+|||+|||+|..+..|++. +.+|+|+|+|+.+++.++++..... .
T Consensus 30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (229)
T d2bzga1 30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFK 106 (229)
T ss_dssp CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceee
Confidence 4555566667777788899999999999999999975 6799999999999999887643211 0
Q ss_pred hcCCCeeEEeCCCCCcC-CCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 85 ACYKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 85 ~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
....++++.++|+.+++ .....||+|+...++++++ +....++++.++|||||++++......
T Consensus 107 ~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~ 172 (229)
T d2bzga1 107 SSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYD 172 (229)
T ss_dssp ETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred ecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccC
Confidence 11157899999998864 4567899999999999994 568899999999999999888776653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.83 E-value=1.5e-20 Score=133.59 Aligned_cols=118 Identities=15% Similarity=0.086 Sum_probs=95.2
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh---------hcCCCeeEEeCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK---------ACYKNIEWVEGD 96 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~d 96 (222)
....+..+|+.+|||+|||+|..+..|+++ +.+|+|+|+|+.+++.++++...... .....+.+.++|
T Consensus 12 ~~~~l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 88 (201)
T d1pjza_ 12 YWSSLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 88 (201)
T ss_dssp HHHHHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHHcCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence 445567889999999999999999999986 67999999999999999988643211 011456788888
Q ss_pred CCCcCC-CCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 97 ALDLPF-SDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 97 ~~~~~~-~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
+.+++. ...+||+|++..+++++++ ....++++.++|||||.+++.....
T Consensus 89 ~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 89 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred ccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 887653 3457999999999999964 6789999999999999988876554
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=2.7e-19 Score=128.50 Aligned_cols=154 Identities=20% Similarity=0.158 Sum_probs=112.6
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---CCCCC
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDC 105 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~ 105 (222)
.+...|+.+|||+|||+|.++.++++.+++.++|+++|+++.+++.++++.... .++..+..|.... +....
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-----~~~~~i~~d~~~~~~~~~~~~ 142 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTCC
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-----CCceEEEEECCCccccccccc
Confidence 456789999999999999999999999988899999999999999999886543 4788888887653 23345
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
.+|+|++. +.+.++...+++++++.|||||.+++............. ..
T Consensus 143 ~vD~i~~d--~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~-~~---------------------------- 191 (227)
T d1g8aa_ 143 KVDVIFED--VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP-EQ---------------------------- 191 (227)
T ss_dssp CEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH-HH----------------------------
T ss_pred ceEEEEEE--ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCH-HH----------------------------
Confidence 68888763 455667788999999999999999887543211100000 00
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeecCC--eeeeEeeeC
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELSGG--LMGNLVATR 222 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~--~~~~~~~~k 222 (222)
-.++.+++ .+.||++++..+.... ....++++|
T Consensus 192 ---v~~~v~~l-~~~gf~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 192 ---VFREVERE-LSEYFEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp ---HHHHHHHH-HHTTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred ---HHHHHHHH-HHcCCEEEEEEcCCCCCCceEEEEEEe
Confidence 01234444 4579999998776442 356788887
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.82 E-value=4.4e-20 Score=134.22 Aligned_cols=112 Identities=21% Similarity=0.328 Sum_probs=93.2
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.++..+...|+.+|||+|||+|.++..+++.+++.++|+++|.++++++.|++++..... ..++++...|+.+. +++
T Consensus 76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~--~~nv~~~~~Di~~~-~~~ 152 (250)
T d1yb2a1 76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD--IGNVRTSRSDIADF-ISD 152 (250)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC--CTTEEEECSCTTTC-CCS
T ss_pred HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC--CCceEEEEeeeecc-ccc
Confidence 456677889999999999999999999999888888999999999999999998865432 26899999999875 345
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
++||.|++ +++++..+++++.++|||||++++..+
T Consensus 153 ~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 153 QMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp CCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred ceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeC
Confidence 78999987 567888899999999999999987543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.4e-19 Score=134.08 Aligned_cols=100 Identities=29% Similarity=0.435 Sum_probs=88.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.++++. +++.+.++|+.++++++++||+|++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~--------~~~~~~~~d~~~l~~~~~sfD~v~~ 153 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY--------PQVTFCVASSHRLPFSDTSMDAIIR 153 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC--------TTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc--------ccccceeeehhhccCCCCCEEEEee
Confidence 456799999999999999999884 6779999999999999998764 5899999999999999999999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
.+++++ ++++.++|||||.+++..+....
T Consensus 154 ~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~~ 182 (268)
T d1p91a_ 154 IYAPCK-------AEELARVVKPGGWVITATPGPRH 182 (268)
T ss_dssp ESCCCC-------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred cCCHHH-------HHHHHHHhCCCcEEEEEeeCCcc
Confidence 988876 46789999999999999876543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.81 E-value=1.1e-19 Score=129.39 Aligned_cols=108 Identities=15% Similarity=0.029 Sum_probs=88.2
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC---
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC--- 105 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 105 (222)
.+...|+.+|||+|||+|..+.++++.. +.++|+|+|+|+.+++.++++.... +++.++..|+...+....
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~ 124 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIVE 124 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTCC
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhcc-----CCceEEEeeccCccccccccc
Confidence 3577899999999999999999999987 4569999999999999999886543 589999999887654333
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+|+|+ ..+.+..+...+++++.+.|||||.+++...
T Consensus 125 ~vd~v~--~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 125 KVDLIY--QDIAQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp CEEEEE--ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEE--ecccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence 344443 3466667788999999999999999988754
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2e-19 Score=132.98 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=102.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhc-------------------------
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC------------------------- 86 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~------------------------- 86 (222)
...+.+|||+|||+|.++...+... ..+|+++|+|+.+++.+++.+.......
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 3457899999999998875544332 3479999999999999987654321000
Q ss_pred --CCCeeEEeCCCCCc------CCCCCceeEEEEcccccCcc----cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhH
Q 027517 87 --YKNIEWVEGDALDL------PFSDCFFDAITMGYGLRNVV----DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTA 154 (222)
Q Consensus 87 --~~~i~~~~~d~~~~------~~~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~ 154 (222)
.........|+... +...++||+|++.+++++++ +...+++++.++|||||.|++.+..........
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~- 208 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG- 208 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET-
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC-
Confidence 00113344565432 23345799999999999984 568899999999999999999876532210000
Q ss_pred HHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEee
Q 027517 155 IQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 209 (222)
.. ......++.+++.++++++||++++...
T Consensus 209 -------------~~------------~~~~~~~t~e~v~~~l~~aGf~v~~~~~ 238 (263)
T d2g72a1 209 -------------EA------------RLTVVPVSEEEVREALVRSGYKVRDLRT 238 (263)
T ss_dssp -------------TE------------EEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred -------------Cc------------ccccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 00 0001247999999999999999887553
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.81 E-value=8.2e-19 Score=123.96 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=96.0
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
.+.+++.+...++.+|||+|||+|.++..+++. ..+++++|+|+.+++.+++++...+... .++++..+|+.+ +.
T Consensus 41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~---~~~v~~iD~s~~~i~~a~~n~~~~~l~~-~~i~~~~~d~~~-~~ 115 (194)
T d1dusa_ 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDN-YDIRVVHSDLYE-NV 115 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTT-SCEEEEECSTTT-TC
T ss_pred HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhh---ccccceeeeccccchhHHHHHHHhCCcc-ceEEEEEcchhh-hh
Confidence 356777788888999999999999999998865 3489999999999999999876544321 468999999877 45
Q ss_pred CCCceeEEEEcccccCccc-HHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVVD-KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~-~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++++||+|+++.++++..+ ...+++++.+.|+|||.+++..
T Consensus 116 ~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 116 KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 5678999999999887765 4778999999999999987754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=1.6e-19 Score=129.09 Aligned_cols=112 Identities=25% Similarity=0.395 Sum_probs=96.1
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
....+++.+...++.+|||+|||+|..+..+++.+++.+.|+++|+++++++.+++++..... .++.+.++|..+..
T Consensus 63 ~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~---~n~~~~~~d~~~~~ 139 (213)
T d1dl5a1 63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI---ENVIFVCGDGYYGV 139 (213)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGCC
T ss_pred hhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc---cccccccCchHHcc
Confidence 345677888899999999999999999999999888888999999999999999999865543 58899999988765
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
...++||+|++..+++++++ .+.+.|||||+|++.
T Consensus 140 ~~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 140 PEFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp GGGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEE
T ss_pred ccccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEE
Confidence 55678999999999998874 356779999999874
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=3.2e-19 Score=131.19 Aligned_cols=113 Identities=23% Similarity=0.328 Sum_probs=96.6
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..++..+...|+.+|||+|||+|.++..+++.+++.++++++|+++++++.|++++...+.. .++.+...|+.. .++
T Consensus 93 ~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~--~~v~~~~~d~~~-~~~ 169 (266)
T d1o54a_ 93 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI--ERVTIKVRDISE-GFD 169 (266)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG--GGEEEECCCGGG-CCS
T ss_pred HHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc--cCcEEEeccccc-ccc
Confidence 46778889999999999999999999999999888889999999999999999998765533 578888888654 344
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
...+|.|+. +++++..+++++.++|||||++++..+
T Consensus 170 ~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 170 EKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp CCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred ccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeC
Confidence 567998875 678899999999999999999987654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.80 E-value=1.7e-19 Score=126.68 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=98.8
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
...+..++..+...++.+|||+|||+|.++..+++. ..+|+++|+++++++.++++....+.. ++++++++|+.+
T Consensus 19 ~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~--~~v~~~~gda~~ 93 (186)
T d1l3ia_ 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLG--DNVTLMEGDAPE 93 (186)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC--TTEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCC--cceEEEECchhh
Confidence 445677788889999999999999999999998864 458999999999999999998766543 589999999988
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
...+.+.||.|++....++ ...+++.+.+.|||||++++...
T Consensus 94 ~~~~~~~~D~v~~~~~~~~---~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 94 ALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp HHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccccCCcCEEEEeCcccc---chHHHHHHHHHhCcCCEEEEEee
Confidence 7666678999999876654 46789999999999999987643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.79 E-value=3.2e-18 Score=124.49 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=114.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
....+|+|||||+|.++..+++++ |+.+++++|. ++.++.+... .+++++.+|+.+. . ..+|++++
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~~~~~---------~rv~~~~gD~f~~-~--p~aD~~~l 144 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGS---------NNLTYVGGDMFTS-I--PNADAVLL 144 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCB---------TTEEEEECCTTTC-C--CCCSEEEE
T ss_pred cCceEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHHHhCccc---------CceEEEecCcccC-C--CCCcEEEE
Confidence 445689999999999999999996 7789999998 5555544322 6999999998863 2 35799999
Q ss_pred cccccCcccH--HHHHHHHhcccCCC---cEEEEEecCCCCCchhhHHH--HHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 113 GYGLRNVVDK--RKALEESFRVLKPG---SRISVLDFNKSTQPFTTAIQ--EWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 113 ~~~l~~~~~~--~~~l~~~~~~l~~g---G~l~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
.+++|++++. .++|+++++.|+|| |+++|.+...++........ ....+- .+.. ...
T Consensus 145 ~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl---------------~m~~-~~G 208 (244)
T d1fp2a2 145 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDV---------------NMAC-LNG 208 (244)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHH---------------HGGG-GTC
T ss_pred EeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHH---------------HHHh-CCC
Confidence 9999999764 67899999999998 78888876654433221111 111100 0000 112
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeee
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 221 (222)
+.+|.++|+++++++||+++++....+. ..++.++
T Consensus 209 ~ert~~e~~~ll~~AGf~~~~i~~~~~~-~svIE~~ 243 (244)
T d1fp2a2 209 KERNEEEWKKLFIEAGFQHYKISPLTGF-LSLIEIY 243 (244)
T ss_dssp CCEEHHHHHHHHHHTTCCEEEEEEEETT-EEEEEEE
T ss_pred cCCCHHHHHHHHHHcCCceEEEEECCCC-eEEEEEe
Confidence 4568999999999999999999877654 4565543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.78 E-value=4.9e-18 Score=123.78 Aligned_cols=161 Identities=20% Similarity=0.138 Sum_probs=112.7
Q ss_pred HHHHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 25 MAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 25 ~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
.++..... .+..+|+|||||+|.++..+++++ |+.+++++|.. ..++.++.. +++.+..+|+.+ +.|
T Consensus 71 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~~~~~---------~r~~~~~~d~~~-~~P 138 (243)
T d1kyza2 71 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLP-HVIEDAPSY---------PGVEHVGGDMFV-SIP 138 (243)
T ss_dssp HHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECT-TTTTTCCCC---------TTEEEEECCTTT-CCC
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccH-HhhhhcccC---------CceEEecccccc-cCC
Confidence 34443333 345789999999999999999996 78899999984 444433332 689999999876 333
Q ss_pred CCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCch---hhHHHHHHhhcccccccccCChhHHHH
Q 027517 104 DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPF---TTAIQEWMIDNVVVPVASGYGLAEEYQ 178 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (222)
..|.+++.+++|.+++ ...+|+++++.|+|||++++.+...+.... ......... ..
T Consensus 139 --~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d----------------~~ 200 (243)
T d1kyza2 139 --KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHID----------------VI 200 (243)
T ss_dssp --CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHH----------------HH
T ss_pred --CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHH----------------HH
Confidence 3577888999999964 678999999999999999998876432221 111111111 11
Q ss_pred HhHH-hHhhcCCHHHHHHHHHHcCCeEEEEeeecCCee
Q 027517 179 YLKS-SIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 215 (222)
Q Consensus 179 ~~~~-~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 215 (222)
.+.. .....+|.+||+++++++||+.++++....+.+
T Consensus 201 ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~ 238 (243)
T d1kyza2 201 MLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTY 238 (243)
T ss_dssp HHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEE
T ss_pred HHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCE
Confidence 1110 112346899999999999999999887766554
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=7.8e-20 Score=132.57 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=85.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v 110 (222)
.++.+|||||||+|..+..+++. ...+++++|+|+.+++.++++..... .++..+..++... ++++++||.|
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~--~~~~v~~id~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~fD~i 125 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVAPTLPDGHFDGI 125 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHc--CCCeEEEeCCCHHHHHHHHHHhhhcc----cccccccccccccccccccccccce
Confidence 56789999999999999999876 23589999999999999998875443 4677777776543 4566789988
Q ss_pred E-----EcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 111 T-----MGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 111 ~-----~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+ +...++|+++...++++++++|||||++++.
T Consensus 126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 7 4667788888999999999999999999763
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=5.2e-18 Score=121.92 Aligned_cols=116 Identities=27% Similarity=0.299 Sum_probs=94.9
Q ss_pred HHHHHHhh--CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh--hcCCCeeEEeCCCC
Q 027517 23 KRMAVSWS--GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK--ACYKNIEWVEGDAL 98 (222)
Q Consensus 23 ~~~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~d~~ 98 (222)
...+++.+ ...|+.+|||+|||+|..+..+++..++.++|+++|+++++++.+++++..... -...++.+..+|..
T Consensus 63 ~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~ 142 (224)
T d1i1na_ 63 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR 142 (224)
T ss_dssp HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence 34556665 668899999999999999999999888888999999999999999988765321 12257899999988
Q ss_pred CcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 99 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
....+..+||+|++..+++++++ .+.+.|||||+|++...
T Consensus 143 ~~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 143 MGYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPVG 182 (224)
T ss_dssp GCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred cccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEEc
Confidence 76666678999999999998864 46788999999988543
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.8e-17 Score=124.77 Aligned_cols=115 Identities=27% Similarity=0.436 Sum_probs=94.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh--------hcCCCeeEEeC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK--------ACYKNIEWVEG 95 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~ 95 (222)
..++..+...|+.+|||+|||+|.++..+++.++++++|+++|+++++++.|++++..... ....++.+...
T Consensus 88 ~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~ 167 (324)
T d2b25a1 88 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 167 (324)
T ss_dssp HHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEec
Confidence 4677788999999999999999999999999998889999999999999999998765321 12268999999
Q ss_pred CCCCcC--CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 96 DALDLP--FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 96 d~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|+.+.. .+...||.|++ +++++..++.++.++|||||++++..
T Consensus 168 di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 168 DISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp CTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred chhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEe
Confidence 988753 34567999987 56777789999999999999998753
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=4.7e-17 Score=119.60 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=119.2
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
.+.+...++.... ..+.+|||+|||+|..+..++... +..+++++|+|+.+++.|+++....+. .+++++++|+.
T Consensus 94 TE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~---~~v~~~~~d~~ 168 (274)
T d2b3ta1 94 TECLVEQALARLP-EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWF 168 (274)
T ss_dssp HHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTT
T ss_pred hhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCc---ccceeeecccc
Confidence 3444455555443 345689999999999999999885 778999999999999999999876654 47999999987
Q ss_pred CcCCCCCceeEEEEcccccCccc-------------------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhh
Q 027517 99 DLPFSDCFFDAITMGYGLRNVVD-------------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTT 153 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~~~~-------------------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~ 153 (222)
+ +.+..+||+|+++-..-...+ ..+++....+.|+|||.+++. ...
T Consensus 169 ~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE-ig~------- 239 (274)
T d2b3ta1 169 S-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE-HGW------- 239 (274)
T ss_dssp G-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE-CCS-------
T ss_pred c-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE-ECc-------
Confidence 7 344568999999866432111 246888999999999999773 221
Q ss_pred HHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeee
Q 027517 154 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 221 (222)
-..+.+.+++++.||..+++.....|.-.+++|+
T Consensus 240 ----------------------------------~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 240 ----------------------------------QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp ----------------------------------SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ----------------------------------hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 1235778999999999888888888888777775
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=2.5e-18 Score=129.09 Aligned_cols=120 Identities=24% Similarity=0.251 Sum_probs=87.9
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhc-CCCeeEEeCCCCCc
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC-YKNIEWVEGDALDL 100 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~ 100 (222)
...++.+.++..++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++........ .....+...+....
T Consensus 44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (292)
T d1xvaa_ 44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL 120 (292)
T ss_dssp HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc
Confidence 4455666666677789999999999999999876 5689999999999999988764332110 01334455555432
Q ss_pred C---CCCCceeEEEEc-ccccCccc-------HHHHHHHHhcccCCCcEEEEEec
Q 027517 101 P---FSDCFFDAITMG-YGLRNVVD-------KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 ~---~~~~~~D~v~~~-~~l~~~~~-------~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+ ...++||.|++. .+++|+++ ...++++++++|||||.+++...
T Consensus 121 ~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 121 DKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp HHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 1 124679999875 57888753 56799999999999999988654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=1.5e-17 Score=117.50 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CCCCceeEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~ 111 (222)
+...|||||||+|..+..+++. .|+..++|+|+++.++..+.++....+. .|+.++++|+..+. ++++++|.|+
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~l---~Nv~~~~~Da~~l~~~~~~~~~d~v~ 104 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQ-NPDINYIGIELFKSVIVTAVQKVKDSEA---QNVKLLNIDADTLTDVFEPGEVKRVY 104 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHSCC---SSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred CCceEEEEEecCcHHHHHHHHh-CCCCcEEEeecchHHHHHHHHHHHHHhc---cCchhcccchhhhhcccCchhhhccc
Confidence 3458999999999999999998 5888999999999999999988765543 68999999998754 6778899999
Q ss_pred EcccccCcccH--------HHHHHHHhcccCCCcEEEEEe
Q 027517 112 MGYGLRNVVDK--------RKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 112 ~~~~l~~~~~~--------~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+++...+.... ..+++.+.++|||||.|.+.+
T Consensus 105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 99887766432 579999999999999998863
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2e-17 Score=125.62 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=95.6
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh------hcCCCeeEEeC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK------ACYKNIEWVEG 95 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~ 95 (222)
....+++.+...++.+|||+|||+|..+..+++.. +..+++|+|+++.+++.|++....... ....++.++++
T Consensus 139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g 217 (328)
T d1nw3a_ 139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 217 (328)
T ss_dssp HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence 34566777888999999999999999999999875 445799999999999999877543221 12257999999
Q ss_pred CCCCcCCCCCc--eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 96 DALDLPFSDCF--FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 96 d~~~~~~~~~~--~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|+.+.++.+.. +|+|+++. +.+.++....+.++.+.|||||+++.....
T Consensus 218 d~~~~~~~~~~~~advi~~~~-~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~ 268 (328)
T d1nw3a_ 218 DFLSEEWRERIANTSVIFVNN-FAFGPEVDHQLKERFANMKEGGRIVSSKPF 268 (328)
T ss_dssp CTTSHHHHHHHHHCSEEEECC-TTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred cccccccccccCcceEEEEcc-eecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 99987654333 46777654 556788899999999999999999876543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.69 E-value=3e-16 Score=110.79 Aligned_cols=106 Identities=23% Similarity=0.239 Sum_probs=88.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CCCCceeEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~ 111 (222)
....|||||||+|.++..+++.. |+..++|+|+++.++..+.++....+. +|+.+..+|+.++. +++.++|.|+
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l---~Ni~~~~~da~~l~~~~~~~~~~~i~ 106 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV---PNIKLLWVDGSDLTDYFEDGEIDRLY 106 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC---SSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhcc---ccceeeecCHHHHhhhccCCceehhc
Confidence 34589999999999999999994 788999999999999999888765543 59999999998754 5678899999
Q ss_pred EcccccCcccH--------HHHHHHHhcccCCCcEEEEEe
Q 027517 112 MGYGLRNVVDK--------RKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 112 ~~~~l~~~~~~--------~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+++.-.+.... ..+++.+.++|||||.+.+.+
T Consensus 107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 98876554331 678999999999999998753
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.69 E-value=1.3e-16 Score=114.05 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=87.8
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
...+++.+...++.+|||+|||+|..+..+++. ..+|+++|++++.++.++++.... .++.++.+|......
T Consensus 59 ~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l---~~~V~aiE~~~~~~~~A~~~~~~~-----~nv~~~~~d~~~g~~ 130 (224)
T d1vbfa_ 59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI---VDKVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLGYE 130 (224)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGCCG
T ss_pred HHHHHHHhhhcccceEEEecCCCCHHHHHHHHH---hcccccccccHHHHHHHHHHHhcc-----cccccccCchhhcch
Confidence 345677888999999999999999999988876 358999999999999999876532 689999999876433
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
...+||.|++..++.++++ .+.+.|+|||+|++.
T Consensus 131 ~~~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 131 EEKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILP 164 (224)
T ss_dssp GGCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred hhhhHHHHHhhcchhhhhH------HHHHhcCCCCEEEEE
Confidence 4577999999999888764 356789999999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=5.6e-16 Score=117.82 Aligned_cols=116 Identities=23% Similarity=0.242 Sum_probs=89.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+++.+.......++++|||||||+|.++..+++. + ..+|+++|.++ +++.+++........ .++.++.+|+.+
T Consensus 24 ~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~-G-a~~V~avd~s~-~~~~a~~~~~~~~~~--~~i~~i~~~~~~ 98 (328)
T d1g6q1_ 24 LSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMSS-IIEMAKELVELNGFS--DKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESST-HHHHHHHHHHHTTCT--TTEEEEESCTTT
T ss_pred HHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHh-C-CCEEEEEeCCH-HHHHHHHHHHHhCcc--ccceEEEeehhh
Confidence 445555555444557889999999999999887765 2 24899999986 567777665544432 689999999999
Q ss_pred cCCCCCceeEEEEcccccCc---ccHHHHHHHHhcccCCCcEEE
Q 027517 100 LPFSDCFFDAITMGYGLRNV---VDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~l~~gG~l~ 140 (222)
+++++++||+|++....+.+ .....++....++|||||.++
T Consensus 99 l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 99 VHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 98888899999986655544 457888999999999999985
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.64 E-value=9.7e-16 Score=108.74 Aligned_cols=111 Identities=22% Similarity=0.246 Sum_probs=93.3
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
....+++.+...++.+|||||||+|+.+..+++.. +.+|+++|.+++.++.+++++...+. .|+.+.++|..+-.
T Consensus 66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~---~nv~~~~gd~~~g~ 140 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGV---KNVHVILGDGSKGF 140 (215)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGCC
T ss_pred hHHHHHHhhccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCC---ceeEEEECccccCC
Confidence 34567788889999999999999999999999876 45799999999999999999876654 69999999988754
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
....+||.|++..+..++|+. +.+.|+|||+|++..
T Consensus 141 ~~~~pfD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 141 PPKAPYDVIIVTAGAPKIPEP------LIEQLKIGGKLIIPV 176 (215)
T ss_dssp GGGCCEEEEEECSBBSSCCHH------HHHTEEEEEEEEEEE
T ss_pred cccCcceeEEeecccccCCHH------HHHhcCCCCEEEEEE
Confidence 456789999999999888753 556789999998743
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=1.5e-15 Score=114.86 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=87.1
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+++.+.......++++|||||||+|.++..+++. +. .+|+++|.++.+ ..+++.....+.. .++.++++|+.+
T Consensus 19 ~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~-Ga-~~V~avd~s~~~-~~a~~~~~~n~~~--~~v~~~~~~~~~ 93 (316)
T d1oria_ 19 LTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA-GA-RKVIGIECSSIS-DYAVKIVKANKLD--HVVTIIKGKVEE 93 (316)
T ss_dssp HHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEECSTTH-HHHHHHHHHTTCT--TTEEEEESCTTT
T ss_pred HHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHh-CC-CEEEEEcCcHHH-hhhhhHHHHhCCc--cccceEeccHHH
Confidence 444455543333457889999999999999888875 22 379999999865 4555544433322 679999999999
Q ss_pred cCCCCCceeEEEEcccccCc---ccHHHHHHHHhcccCCCcEEE
Q 027517 100 LPFSDCFFDAITMGYGLRNV---VDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~l~~gG~l~ 140 (222)
++.+.++||+|++....+.+ .....++..+.++|||||.++
T Consensus 94 ~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 94 VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp CCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred cccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 98888899999987665554 357889999999999999986
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.62 E-value=1.1e-15 Score=109.35 Aligned_cols=114 Identities=20% Similarity=0.285 Sum_probs=89.5
Q ss_pred HHHHHhh--CCCCCCeEEEecCCCChhHHHHHHHhCC-----CCcEEEEeCChhHHHHHhcchhhhhh--hcCCCeeEEe
Q 027517 24 RMAVSWS--GAKTGDNVLDVCCGSGDLSFLLSEQVGS-----QGKVIGLDFSKNQLSMASSRQDLVSK--ACYKNIEWVE 94 (222)
Q Consensus 24 ~~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~--~~~~~i~~~~ 94 (222)
..+++.+ ...++.+|||||||+|+.+..+++..++ ..+|+++|.+++.++.+++++..... ....++.+..
T Consensus 68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~ 147 (223)
T d1r18a_ 68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 147 (223)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence 4455555 5678999999999999999988887543 23799999999999999887644221 1226899999
Q ss_pred CCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 95 GDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 95 ~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|..+...+..+||.|++..++.++|+ .+.+.|+|||++++..
T Consensus 148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 148 GDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPV 190 (223)
T ss_dssp SCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred cccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEE
Confidence 998875555678999999999988875 3677899999997743
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.1e-15 Score=111.71 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=88.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+++.+.......++++|||||||+|.++..+++. +. .+|+++|.++.+... ++.....+. ..++.++++|+.+
T Consensus 21 ~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~-Ga-~~V~aid~s~~~~~a-~~~~~~~~~--~~~i~~~~~~~~~ 95 (311)
T d2fyta1 21 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GA-KKVLGVDQSEILYQA-MDIIRLNKL--EDTITLIKGKIEE 95 (311)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEESSTHHHHH-HHHHHHTTC--TTTEEEEESCTTT
T ss_pred HHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHc-CC-CEEEEEeCHHHHHHH-HHHHHHhCC--CccceEEEeeHHH
Confidence 455566665556667889999999999999988876 22 489999999987654 333333222 2689999999999
Q ss_pred cCCCCCceeEEEEcccccCcc---cHHHHHHHHhcccCCCcEEEE
Q 027517 100 LPFSDCFFDAITMGYGLRNVV---DKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~---~~~~~l~~~~~~l~~gG~l~i 141 (222)
++.+.++||+|++....++.. ....++....++|+|||.++-
T Consensus 96 l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 96 VHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp SCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred hcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 888878999999976666553 356777778889999999863
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.59 E-value=3.9e-14 Score=103.55 Aligned_cols=112 Identities=20% Similarity=0.261 Sum_probs=87.2
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
.+..+...+ .++.+|||+|||+|.++..+++. ..++|+++|+++.+++.++++....+.. .+++++++|+.++.
T Consensus 97 er~ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~--~~v~~~~~D~~~~~ 170 (260)
T d2frna1 97 ERVRMAKVA--KPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVE--DRMSAYNMDNRDFP 170 (260)
T ss_dssp HHHHHHHHC--CTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCT--TTEEEECSCTTTCC
T ss_pred HHHHHHhhc--CCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCC--ceEEEEEcchHHhc
Confidence 334444443 57889999999999999999987 2458999999999999999998766543 57999999998875
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
. ...||.|+++..- ....++....+.|++||++.+.+.
T Consensus 171 ~-~~~~D~Ii~~~p~----~~~~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 171 G-ENIADRILMGYVV----RTHEFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp C-CSCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred c-CCCCCEEEECCCC----chHHHHHHHHhhcCCCCEEEEEec
Confidence 4 4679999986432 234567778888999999866543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=3.9e-15 Score=114.71 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=89.3
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh------hcCCCeeE-Ee
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK------ACYKNIEW-VE 94 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~------~~~~~i~~-~~ 94 (222)
+...+++.+...++++|||||||.|..+..+++..+ ..+++|+|+++.+++.|+++...... .......+ ..
T Consensus 204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence 446677788899999999999999999999998863 34899999999999999988754321 11122333 33
Q ss_pred CCCCCcCC---CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 95 GDALDLPF---SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 95 ~d~~~~~~---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
++..+.+. .-..+|+|+++. +.+.++....+.++.+.|||||+++..+.
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred echhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence 44433221 113478888765 45678889999999999999999987653
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=9.4e-15 Score=101.85 Aligned_cols=121 Identities=21% Similarity=0.342 Sum_probs=99.8
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.+...+++++...++..+||++||+|..+..+++.+ ++++++++|.++++++.+++++...+ .++.++++++.++
T Consensus 10 Vll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~----~r~~~~~~~f~~~ 84 (192)
T d1m6ya2 10 VMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREA 84 (192)
T ss_dssp TTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGH
T ss_pred hHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc----ccccchhHHHhhH
Confidence 345667788888899999999999999999999997 67899999999999999999886654 5899999988764
Q ss_pred C-----CCCCceeEEEEcccccC---------cccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 101 P-----FSDCFFDAITMGYGLRN---------VVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 101 ~-----~~~~~~D~v~~~~~l~~---------~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
. ...+++|.|+....+.. +......+....++|+|||.+++..++.
T Consensus 85 ~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 85 DFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 2 34568999998666532 2345788999999999999999988764
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.48 E-value=2e-13 Score=103.16 Aligned_cols=121 Identities=19% Similarity=0.253 Sum_probs=90.4
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
++..+.++... ..++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++++...+.. .+++++++|+.
T Consensus 132 qr~~r~~~~~~--~~~g~~VLDl~~g~G~~si~~a~~-g-a~~V~~vD~s~~al~~a~~N~~~ngl~--~~~~~~~~d~~ 205 (324)
T d2as0a2 132 QRENRLALEKW--VQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVE--DRMKFIVGSAF 205 (324)
T ss_dssp THHHHHHHGGG--CCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCG--GGEEEEESCHH
T ss_pred hhhHHHHHHhh--cCCCCeeecccCcccchhhhhhhc-C-CcEEEeecCCHHHHHHHHHHHHHcCCC--ccceeeechhh
Confidence 33434444433 357889999999999999988865 2 348999999999999999998776643 57899999987
Q ss_pred Cc----CCCCCceeEEEEcccccCcc---------cHHHHHHHHhcccCCCcEEEEEecC
Q 027517 99 DL----PFSDCFFDAITMGYGLRNVV---------DKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 99 ~~----~~~~~~~D~v~~~~~l~~~~---------~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+. +....+||+|++........ +...++....++|+|||+|+....+
T Consensus 206 ~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 206 EEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred hhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 63 23456899999865533221 2356788889999999999886544
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.9e-12 Score=94.04 Aligned_cols=84 Identities=13% Similarity=0.047 Sum_probs=65.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc------CCCCCce
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------PFSDCFF 107 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~~ 107 (222)
+..++||+|||+|.....+++.. ++.+++|+|+++++++.|+++....... .++.+...+.... ....++|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~--~~~~~~~~~~~~~~~~~~~~~~~~~f 137 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLS--DLIKVVKVPQKTLLMDALKEESEIIY 137 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCT--TTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred ccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCC--cceeeeeeccHHhhhhhhhhcccCce
Confidence 44599999999999999999886 6789999999999999999998776543 5788777654432 1234679
Q ss_pred eEEEEcccccCcc
Q 027517 108 DAITMGYGLRNVV 120 (222)
Q Consensus 108 D~v~~~~~l~~~~ 120 (222)
|+|+|+-.+....
T Consensus 138 D~ivsNPPY~~~~ 150 (250)
T d2h00a1 138 DFCMCNPPFFANQ 150 (250)
T ss_dssp SEEEECCCCC---
T ss_pred eEEEecCcccccc
Confidence 9999999887543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=2.4e-13 Score=102.29 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=84.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----CCCCCcee
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFFD 108 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D 108 (222)
.++.+|||++||+|.++.+++.. ..+|+++|+|+.+++.++++....+. .++.+++.|+.+. +...++||
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl---~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL---GNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC---TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCC---CCcceeeccHHHHhhhhHhhhcCCC
Confidence 46889999999999999988754 45899999999999999999876654 5799999998763 23456899
Q ss_pred EEEEcccccCc---------ccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 109 AITMGYGLRNV---------VDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 109 ~v~~~~~l~~~---------~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+|++...-... .+...++..+.++|+|||.|+...-+
T Consensus 218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99986543222 12356788999999999999876443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=1.6e-13 Score=97.48 Aligned_cols=121 Identities=10% Similarity=0.132 Sum_probs=89.6
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C--
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-- 101 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-- 101 (222)
.+..++...+.++|||+|||+|..+..+++.++++++++++|++++..+.+++++...+.. .+++++.+|..+. +
T Consensus 47 lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~--~~i~l~~Gd~~e~l~~l 124 (214)
T d2cl5a1 47 IMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ--DKVTILNGASQDLIPQL 124 (214)
T ss_dssp HHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG--GGEEEEESCHHHHGGGH
T ss_pred HHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC--ccceeeeccccccccch
Confidence 3334444455679999999999999999998877789999999999999999988765543 5799999998763 2
Q ss_pred ---CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 102 ---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 102 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
...++||+|+.-+.-.. ......+.+..+.|+|||.+++-+...+.
T Consensus 125 ~~~~~~~~~D~ifiD~~~~~-~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g 173 (214)
T d2cl5a1 125 KKKYDVDTLDMVFLDHWKDR-YLPDTLLLEKCGLLRKGTVLLADNVIVPG 173 (214)
T ss_dssp HHHSCCCCEEEEEECSCGGG-HHHHHHHHHHTTCEEEEEEEEESCCCCCC
T ss_pred hhcccccccceeeecccccc-cccHHHHHHHhCccCCCcEEEEeCcCCCC
Confidence 33467999998642111 11233467778899999998775544433
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.42 E-value=9.1e-13 Score=92.18 Aligned_cols=112 Identities=18% Similarity=0.169 Sum_probs=77.0
Q ss_pred CCCCCCeEEEecCCCChhHHHHH----HHhC---CCCcEEEEeCChhHHHHHhcchhhhh--------------------
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLS----EQVG---SQGKVIGLDFSKNQLSMASSRQDLVS-------------------- 83 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~----~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~-------------------- 83 (222)
+..+..+|+++|||+|.-...++ +... ...+++++|+++.+++.|++..-...
T Consensus 21 ~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~ 100 (193)
T d1af7a2 21 RRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGP 100 (193)
T ss_dssp HSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTT
T ss_pred ccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCC
Confidence 34455699999999998654433 2211 12379999999999999874321000
Q ss_pred --------hhcCCCeeEEeCCCCCcC-CCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEE
Q 027517 84 --------KACYKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 84 --------~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~ 142 (222)
......+.+...+..... .+.++||+|+|.+++.++++ ..++++++.+.|+|||.|++.
T Consensus 101 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 101 HEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 001123445555554432 33467999999999999965 478999999999999999874
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.2e-12 Score=93.03 Aligned_cols=116 Identities=15% Similarity=0.181 Sum_probs=92.4
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C--
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-- 101 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-- 101 (222)
.+..+......++|||+|||+|..+..+++.++++++++.+|.+++..+.|++.+...+.. .+++++.+|+.+. +
T Consensus 50 lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~--~~i~~~~Gda~e~l~~~ 127 (219)
T d2avda1 50 LLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE--HKIDLRLKPALETLDEL 127 (219)
T ss_dssp HHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT--TTEEEEESCHHHHHHHH
T ss_pred HHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc--ceEEEEEeehhhcchhh
Confidence 3444444566779999999999999999998877889999999999999999998766544 6899999998652 1
Q ss_pred ---CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 ---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
....+||+|+.... -......++.+.+.|+|||.+++-+..
T Consensus 128 ~~~~~~~~fD~ifiD~d---k~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 128 LAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp HHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred hhhcccCCccEEEEeCC---HHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 23467999999652 345567788889999999999886543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.41 E-value=5.5e-13 Score=89.79 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=80.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~ 111 (222)
-.+.+|||+|||+|.++..++.+ +. .+|+++|.++.+++.++++....... .+++++++|+... +...++||+|+
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~r-ga-~~v~~ve~~~~a~~~~~~n~~~~~~~--~~~~ii~~D~~~~l~~~~~~fDiIf 88 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSR-GM-SAAVLVEKNRKAQAIIQDNIIMTKAE--NRFTLLKMEAERAIDCLTGRFDLVF 88 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TC-CEEEEECCCHHHHHHHHHHHHTTTCG--GGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCCeEEEcCCccCHHHHHHHHh-Cc-ceeeeehhchhhhhhhhhhhhhcccc--cchhhhcccccccccccccccceeE
Confidence 36889999999999999887765 33 38999999999999999988766543 5799999998763 34457899999
Q ss_pred EcccccCcccHHHHHHHHh--cccCCCcEEEEEec
Q 027517 112 MGYGLRNVVDKRKALEESF--RVLKPGSRISVLDF 144 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~--~~l~~gG~l~i~~~ 144 (222)
+..+.. .......+..+. ++|+|+|.+++...
T Consensus 89 ~DPPy~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 89 LDPPYA-KETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp ECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred echhhc-cchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 965432 222344555553 57999999987543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=3e-12 Score=93.53 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=71.2
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
...+...+.+.....+..+|+|+|||+|..+..+++. +..+|+++|+|+++++.|+++....+.. .++.+...|..
T Consensus 95 TE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~--~~~~i~~~~~~ 170 (271)
T d1nv8a_ 95 TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVS--DRFFVRKGEFL 170 (271)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCT--TSEEEEESSTT
T ss_pred hhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCC--ceeEEeecccc
Confidence 4455555555555455668999999999999888764 6789999999999999999998765543 46778888887
Q ss_pred CcC-CCCCceeEEEEccc
Q 027517 99 DLP-FSDCFFDAITMGYG 115 (222)
Q Consensus 99 ~~~-~~~~~~D~v~~~~~ 115 (222)
+.. ...++||+|+++-.
T Consensus 171 ~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 171 EPFKEKFASIEMILSNPP 188 (271)
T ss_dssp GGGGGGTTTCCEEEECCC
T ss_pred cccccccCcccEEEEccc
Confidence 642 23368999999865
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.37 E-value=2.7e-12 Score=96.20 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=84.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----CCCCCce
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFF 107 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~ 107 (222)
..++.+|||++||+|.++.+++.. ...+|+++|+|+.+++.++++....+... .+++++++|+.+. ....++|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~~-~~~~~i~~d~~~~l~~~~~~~~~f 218 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDM-ANHQLVVMDVFDYFKYARRHHLTY 218 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCC-TTEEEEESCHHHHHHHHHHTTCCE
T ss_pred hhCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhcccC-cceEEEEccHHHHHHHHHhhcCCC
Confidence 356889999999999999887754 23379999999999999999987655421 4789999998763 2234689
Q ss_pred eEEEEccccc---------CcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 108 DAITMGYGLR---------NVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 108 D~v~~~~~l~---------~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|+|++.-.-. ...+...+++.+.++|+|||.|+++.-+
T Consensus 219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999854411 1123567888999999999999886543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.34 E-value=5.8e-12 Score=93.36 Aligned_cols=123 Identities=19% Similarity=0.124 Sum_probs=87.5
Q ss_pred hHHHHHHHHhh-CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 20 RIWKRMAVSWS-GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 20 ~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+.-++++.+.+ ...++.+|||++||+|.++..++.. +++|+++|.|+.+++.++++....+... .++.+++.|+.
T Consensus 117 r~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~-~~~~~i~~D~~ 192 (309)
T d2igta1 117 IVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQ-APIRWICEDAM 192 (309)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTT-SCEEEECSCHH
T ss_pred hHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccC-CcEEEEeCCHH
Confidence 33334444433 3456789999999999999988864 5689999999999999999987654321 36899999987
Q ss_pred CcC----CCCCceeEEEEccccc---------Cc-ccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 99 DLP----FSDCFFDAITMGYGLR---------NV-VDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 99 ~~~----~~~~~~D~v~~~~~l~---------~~-~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
+.- ...++||+|++.-.-. .+ .+...+++.+.++|+|||.+++...+.
T Consensus 193 ~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 193 KFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp HHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred HhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 641 2346799999853311 11 124567778889999999876665543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.32 E-value=4.7e-12 Score=88.11 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=60.5
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
..-.+++|||+|||+|.++..++.. + ..+|+++|+++.+++.++++. .++.+.+.|+.+++ ++||+|
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~-g-a~~V~~vDid~~a~~~ar~N~--------~~~~~~~~D~~~l~---~~fD~V 111 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEIS---GKYDTW 111 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGCC---CCEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHc-C-CCcccccccCHHHHHHHHHcc--------ccccEEEEehhhcC---CcceEE
Confidence 3346889999999999998776654 2 247999999999999999886 57899999998763 679999
Q ss_pred EEccccc
Q 027517 111 TMGYGLR 117 (222)
Q Consensus 111 ~~~~~l~ 117 (222)
+++-.+.
T Consensus 112 i~NPPfg 118 (197)
T d1ne2a_ 112 IMNPPFG 118 (197)
T ss_dssp EECCCC-
T ss_pred EeCcccc
Confidence 9987764
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.32 E-value=1.9e-11 Score=85.77 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=64.8
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeE
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 109 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (222)
...-.+.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++++.... .+..++..|...+ +++||+
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~-g-~~~v~~vdi~~~~~~~a~~N~~~~~----~~~~~~~~d~~~~---~~~fD~ 112 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFK----GKFKVFIGDVSEF---NSRVDI 112 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGT----TSEEEEESCGGGC---CCCCSE
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHc-C-CCEEEEEcCcHHHHHHHHHHHHHcC----CCceEEECchhhh---CCcCcE
Confidence 34446789999999999999887754 2 3489999999999999999876554 4778899998775 367999
Q ss_pred EEEcccccCc
Q 027517 110 ITMGYGLRNV 119 (222)
Q Consensus 110 v~~~~~l~~~ 119 (222)
|+++-.+...
T Consensus 113 Vi~nPP~~~~ 122 (201)
T d1wy7a1 113 VIMNPPFGSQ 122 (201)
T ss_dssp EEECCCCSSS
T ss_pred EEEcCccccc
Confidence 9998876544
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.31 E-value=5.6e-12 Score=86.33 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=72.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC----cCCCCCce
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD----LPFSDCFF 107 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~~ 107 (222)
..++.+|||+|||+|.++..++.. +++++++|.++.+++.+++++...+. ...+...+... .....++|
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~----~~~v~~~~~d~~~~~~~~~~~~f 111 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGL----GARVVALPVEVFLPEAKAQGERF 111 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTC----CCEEECSCHHHHHHHHHHTTCCE
T ss_pred ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhcc----ccceeeeehhcccccccccCCcc
Confidence 356789999999999999887765 56899999999999999999876653 33445444432 12345689
Q ss_pred eEEEEcccccCcccHHHHHHHH--hcccCCCcEEEEEe
Q 027517 108 DAITMGYGLRNVVDKRKALEES--FRVLKPGSRISVLD 143 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~--~~~l~~gG~l~i~~ 143 (222)
|+|++.-.++. +....+..+ ..+|+|||.+++..
T Consensus 112 D~If~DPPY~~--~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 112 TVAFMAPPYAM--DLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp EEEEECCCTTS--CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred ceeEEcccccc--CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 99999765442 222233333 35799999887754
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.28 E-value=6.2e-12 Score=89.61 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=89.1
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C------CC
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P------FS 103 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~------~~ 103 (222)
...+.++|||+|+++|..+..+++.++++++++.+|.+++..+.|++.+...+.. +++.++.+++.+. + ..
T Consensus 56 ~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~--~~i~~~~g~a~~~L~~l~~~~~~ 133 (227)
T d1susa1 56 KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD--HKIDFREGPALPVLDEMIKDEKN 133 (227)
T ss_dssp HHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG--GGEEEEESCHHHHHHHHHHCGGG
T ss_pred HhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc--cceeeeehHHHHHHHHHHhcccc
Confidence 3445679999999999999999999877889999999999999999998876554 6899999998763 1 12
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.++||+|+.-. .-......++.+.+.|+|||.+++-+.
T Consensus 134 ~~~fD~iFiDa---~k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 134 HGSYDFIFVDA---DKDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp TTCBSEEEECS---CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred CCceeEEEecc---chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 45799999964 234567788889999999999987543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.23 E-value=7.4e-11 Score=88.01 Aligned_cols=111 Identities=14% Similarity=0.055 Sum_probs=83.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh--hhcCCCeeEEeCCCCCc-CCCCCcee
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--KACYKNIEWVEGDALDL-PFSDCFFD 108 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~d~~~~-~~~~~~~D 108 (222)
.+..++||.||.|.|..+..+++. .+..+++++|+++++++.+++.+.... ....++++++.+|+... ...+++||
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD 153 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence 455679999999999999998876 456699999999999999998874321 11237899999998774 23346799
Q ss_pred EEEEccc--ccC--cc-c--HHHHHHHHhcccCCCcEEEEEe
Q 027517 109 AITMGYG--LRN--VV-D--KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 109 ~v~~~~~--l~~--~~-~--~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|++-.. ... .+ . ...+++.+++.|+|||.+++..
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 9996442 111 11 1 2678999999999999998743
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.23 E-value=1.1e-10 Score=86.15 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=82.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCc-CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDL-PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~-~~~~~~~D~v 110 (222)
+...+||-||.|.|..+..+++. .+..+++++|+++++++.+++.+..... -..++++++..|+... ....++||+|
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKH-DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTS-TTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhc-CCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 45679999999999999999876 3556899999999999999987643221 1237899999998763 3345679999
Q ss_pred EEcccccCc-c----cHHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNV-V----DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~-~----~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++-..-... + -...+++.+++.|+|||.+++..
T Consensus 167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 975432111 1 12678999999999999998753
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.20 E-value=3.5e-10 Score=85.42 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=83.8
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhC----CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG----SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
..+....++.+|||.|||+|.++..+.+.+. ...+++|+|+++.++..|+....... .+......|.....
T Consensus 110 ~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~- 184 (328)
T d2f8la1 110 EKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR----QKMTLLHQDGLANL- 184 (328)
T ss_dssp HHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT----CCCEEEESCTTSCC-
T ss_pred HHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh----hhhhhhcccccccc-
Confidence 3444566778999999999999988876542 22379999999999999887765443 46677777765533
Q ss_pred CCCceeEEEEcccccCccc------------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLRNVVD------------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~------------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+..+||+|+++-++..... ...+++.+.+.|+|||++.++.+.
T Consensus 185 ~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 185 LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 3468999999988643321 124689999999999998776544
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=4.9e-11 Score=82.48 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=80.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~ 112 (222)
.+.+|||++||+|.++..++.+ +. .+|+.+|.++.+++.+++++..... .++.++..|+.+. .....+||+|++
T Consensus 43 ~~~~vLDlfaGsG~~giealsr-Ga-~~v~~VE~~~~a~~~~k~N~~~~~~---~~~~ii~~d~~~~l~~~~~~fDlIf~ 117 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR-YA-AGATLIEMDRAVSQQLIKNLATLKA---GNARVVNSNAMSFLAQKGTPHNIVFV 117 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TC-SEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred chhhhhhhhccccceeeeEEec-Cc-ceeEEEEEeechhhHHHHHHhhccc---cceeeeeecccccccccccccCEEEE
Confidence 5679999999999999988876 22 3899999999999999998865443 5789999998763 334578999999
Q ss_pred cccccCcccHHHHHHHHhc--ccCCCcEEEEE
Q 027517 113 GYGLRNVVDKRKALEESFR--VLKPGSRISVL 142 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~--~l~~gG~l~i~ 142 (222)
.-+... .....++..+.+ +|+++|.+++.
T Consensus 118 DPPY~~-~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 118 DPPFRR-GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp CCSSST-TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cCcccc-chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 876543 334556666654 69999988774
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.19 E-value=2.3e-10 Score=83.79 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=83.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh-hhcCCCeeEEeCCCCCc-CCCCCceeE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-KACYKNIEWVEGDALDL-PFSDCFFDA 109 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~d~~~~-~~~~~~~D~ 109 (222)
.++..+||-||.|.|..+..+++. .+..+++.+|++++.++.+++.+.... ....++++++..|.... ....++||+
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~-~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv 151 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV 151 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhc-CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence 345679999999999999999976 345689999999999999999864321 11237899999998763 334568999
Q ss_pred EEEcccccCc--cc--HHHHHHHHhcccCCCcEEEEEe
Q 027517 110 ITMGYGLRNV--VD--KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 110 v~~~~~l~~~--~~--~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|+.-..-..- .. ...+++.+++.|+|||.++...
T Consensus 152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 9975432111 11 3678999999999999998753
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.17 E-value=1.3e-10 Score=80.13 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=87.8
Q ss_pred HHHHHHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 21 IWKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 21 ~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..++.+..++. ..++.+|||++||+|.++..++.+ + ..+|+++|.++.+++.+++++...... .++++++.|+..
T Consensus 27 ~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~sr-G-a~~v~~ve~~~~a~~~~~~N~~~~~~~--~~~~i~~~D~~~ 102 (182)
T d2fhpa1 27 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEP--EKFEVRKMDANR 102 (182)
T ss_dssp HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCG--GGEEEEESCHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEcccccccccceeeec-c-hhHHHHHHHHHHHHHHHHHHhhhhhcc--cccccccccchh
Confidence 44455556554 347889999999999999988876 2 237999999999999999998765433 578999999876
Q ss_pred c----CCCCCceeEEEEcccccCcccHHHHHHHHh--cccCCCcEEEEEe
Q 027517 100 L----PFSDCFFDAITMGYGLRNVVDKRKALEESF--RVLKPGSRISVLD 143 (222)
Q Consensus 100 ~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~l~~gG~l~i~~ 143 (222)
. .....+||+|++.-.+. ..+....+..+. .+|+++|.+++..
T Consensus 103 ~l~~~~~~~~~fDlIflDPPY~-~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 103 ALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhhhcccCCCcceEEechhhh-hhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 3 12345799999977643 334566677765 4799999887643
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.17 E-value=1.5e-10 Score=84.96 Aligned_cols=110 Identities=11% Similarity=0.077 Sum_probs=81.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh-------hhcCCCeeEEeCCCCCcCCCC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-------KACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.++..+||.+|+|.|..+..+++. +..+++.+|+++++++.+++.+.... ....++++++.+|+...-...
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~ 147 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN 147 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred CCCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence 455679999999999999988865 34589999999999999997653211 112368999999987642234
Q ss_pred CceeEEEEcccccCcc-c---HHHHHHHHhcccCCCcEEEEEe
Q 027517 105 CFFDAITMGYGLRNVV-D---KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~-~---~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++||+|++-..-..-+ . ...+++.+++.|+|||.+++..
T Consensus 148 ~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 148 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 6799999744322111 1 2578999999999999998754
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.4e-10 Score=83.99 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=84.0
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh-hhcCCCeeEEeCCCCCc-CCCCCce
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-KACYKNIEWVEGDALDL-PFSDCFF 107 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~d~~~~-~~~~~~~ 107 (222)
...+..++||-+|.|.|..+..+.+. .+..+++.+|+++++++.+++.+.... ....++++++..|+... ....++|
T Consensus 74 ~~~~~pk~vLiiGgG~G~~~~~~l~~-~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y 152 (285)
T d2o07a1 74 CSHPNPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAF 152 (285)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCE
T ss_pred hhCcCcCeEEEeCCCchHHHHHHHHc-CCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCC
Confidence 34456679999999999999999876 345699999999999999998874321 12237999999998763 2334689
Q ss_pred eEEEEcccccCc-cc---HHHHHHHHhcccCCCcEEEEEecC
Q 027517 108 DAITMGYGLRNV-VD---KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 108 D~v~~~~~l~~~-~~---~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|+|++-..-..- +. ...+++.+++.|+|||.+++...+
T Consensus 153 DvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 153 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 999975421111 11 246799999999999999876433
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.15 E-value=1.5e-10 Score=82.90 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=69.9
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
...+.+++.....++++|||||||+|.++..+++. ..+++++|+++.+.+..+++.... +++.++.+|+.++
T Consensus 8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~~-----~n~~i~~~D~l~~ 79 (235)
T d1qama_ 8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDH-----DNFQVLNKDILQF 79 (235)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC-----CSEEEECCCGGGC
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhcc-----cchhhhhhhhhhc
Confidence 34456777777889999999999999999999987 358999999999999998876432 6899999999998
Q ss_pred CCCCCceeEEEEcccc
Q 027517 101 PFSDCFFDAITMGYGL 116 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l 116 (222)
+.+......|+++...
T Consensus 80 ~~~~~~~~~vv~NLPY 95 (235)
T d1qama_ 80 KFPKNQSYKIFGNIPY 95 (235)
T ss_dssp CCCSSCCCEEEEECCG
T ss_pred cccccccceeeeeehh
Confidence 7654444456655544
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.12 E-value=1.4e-10 Score=85.93 Aligned_cols=110 Identities=15% Similarity=0.049 Sum_probs=80.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh-hhhcCCCeeEEeCCCCCc-CCCCCceeE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALDL-PFSDCFFDA 109 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~d~~~~-~~~~~~~D~ 109 (222)
.+..++||-||.|.|..+..+++. .+..+++.+|+++++++.+++.+... .....++++++..|.... ....++||+
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~-~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDv 182 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV 182 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHc-CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence 345679999999999999999976 34568999999999999999876432 112237899999998763 234568999
Q ss_pred EEEcccccCcc----cHHHHHHHHhcccCCCcEEEEE
Q 027517 110 ITMGYGLRNVV----DKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 110 v~~~~~l~~~~----~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
|++-..-..-+ -...+++.+++.|+|||.++..
T Consensus 183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp EEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 99754321111 1256799999999999999875
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.10 E-value=2e-09 Score=79.21 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=83.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh-hhcCCCeeEEeCCCCCc--CCCCCcee
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS-KACYKNIEWVEGDALDL--PFSDCFFD 108 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~d~~~~--~~~~~~~D 108 (222)
.+..++||-+|.|.|..+..+.+. .+..+++.+|+++++++.+++.+.... ....++++++..|.... ..++++||
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD 156 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 156 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCCcceEEecCCchHHHHHHHhc-ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence 345679999999999999999886 344589999999999999998763211 12237899999998763 23346899
Q ss_pred EEEEcccccCc-cc---HHHHHHHHhcccCCCcEEEEEe
Q 027517 109 AITMGYGLRNV-VD---KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 109 ~v~~~~~l~~~-~~---~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|+.-..-..- +. ...+++.+++.|+|||.++...
T Consensus 157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 99974432111 11 2678999999999999998764
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=99.09 E-value=3.9e-10 Score=77.39 Aligned_cols=114 Identities=24% Similarity=0.337 Sum_probs=90.0
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP- 101 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~- 101 (222)
...+++.+...++..++|..+|.|+.+..+++. +++|+++|.++++++.+++... +++.+++.+..++.
T Consensus 7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~~~-------~~~~~~~~~f~~~~~ 76 (182)
T d1wg8a2 7 YQEALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLHL-------PGLTVVQGNFRHLKR 76 (182)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHTCC-------TTEEEEESCGGGHHH
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhccc-------cceeEeehHHHHHHH
Confidence 355667778889999999999999999999875 4699999999999999887531 58899998877642
Q ss_pred ----CCCCceeEEEEcccccCcc---------cHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 102 ----FSDCFFDAITMGYGLRNVV---------DKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 102 ----~~~~~~D~v~~~~~l~~~~---------~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
...+++|.|++...+..+. .....|......++|||.+++..++.
T Consensus 77 ~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs 134 (182)
T d1wg8a2 77 HLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS 134 (182)
T ss_dssp HHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred HHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence 3346799999866554331 23557888899999999999987764
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=99.08 E-value=2.6e-11 Score=87.35 Aligned_cols=89 Identities=16% Similarity=0.224 Sum_probs=72.8
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.....+++.+...++++|||||||+|.++..+++. +.+++++|+++.+++.++++.... +++.++++|+.++
T Consensus 16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~~~-----~n~~ii~~D~l~~ 87 (245)
T d1yuba_ 16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLKLN-----TRVTLIHQDILQF 87 (245)
T ss_dssp TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTTTC-----SEEEECCSCCTTT
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhhhc-----cchhhhhhhhhcc
Confidence 33456777778888999999999999999999987 358999999999998888776432 5899999999998
Q ss_pred CCCCCceeEEEEccccc
Q 027517 101 PFSDCFFDAITMGYGLR 117 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~ 117 (222)
+.+...++.|+++...+
T Consensus 88 ~~~~~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 88 QFPNKQRYKIVGNIPYH 104 (245)
T ss_dssp TCCCSSEEEEEEECCSS
T ss_pred ccccceeeeEeeeeehh
Confidence 87766777788777654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.04 E-value=2.9e-09 Score=79.42 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=91.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
......+...++.+|||++||+|.-+.+++...+..+.+++.|.++.-+...+++..+.+. .++.....|...++..
T Consensus 106 ~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~---~~i~~~~~d~~~~~~~ 182 (313)
T d1ixka_ 106 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHIGEL 182 (313)
T ss_dssp HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGGGGG
T ss_pred cchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh---hccccccccccccccc
Confidence 3444566778999999999999999999999887778999999999999998888776654 5788888887776555
Q ss_pred CCceeEEEEccc------ccCccc----------------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 DCFFDAITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 ~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
...||.|++-.. +..-++ ..+++.+..+.+||||+++-++-+-
T Consensus 183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 678999995222 221121 2567899999999999987765443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.03 E-value=9.9e-10 Score=78.20 Aligned_cols=110 Identities=24% Similarity=0.266 Sum_probs=81.0
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
...+++++...++.+|||.|||+|.++..+.+.......++|+|+++..++.+ .....+++|......
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~------------~~~~~~~~~~~~~~~ 75 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGILADFLLWEP 75 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEEESCGGGCCC
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc------------ccceeeeeehhcccc
Confidence 45566777778889999999999999998888766666899999998654322 245667777766443
Q ss_pred CCCceeEEEEcccccCccc-----------------------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLRNVVD-----------------------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~-----------------------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
..+||+|+++..+..... ...++....+.|++||++.++.+.
T Consensus 76 -~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 76 -GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp -SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred -ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 467999999877543210 134567888999999998887543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=4.8e-09 Score=73.25 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=88.6
Q ss_pred hhHHHHHHHHhh---CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC
Q 027517 19 HRIWKRMAVSWS---GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG 95 (222)
Q Consensus 19 ~~~~~~~~~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 95 (222)
...|.+++++-+ ..-++.+|+|+|+|.|.-...++-. .|+.+++.+|.+..-+...++-....+. .++++++.
T Consensus 47 ~~~~~rHi~DSl~~~~~~~~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~L~L---~nv~v~~~ 122 (207)
T d1jsxa_ 47 NEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHELKL---ENIEPVQS 122 (207)
T ss_dssp -CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTC---SSEEEEEC
T ss_pred HHHHHHHhcchHhhhhhhcCCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHHcCC---cceeeecc
Confidence 355656555422 3335679999999999999988876 4788999999999888887776655543 58999999
Q ss_pred CCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 96 DALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 96 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.+++... ..+||+|++..+ .+...++.-+...++++|.+++.
T Consensus 123 R~E~~~~-~~~fD~V~sRA~----~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 123 RVEEFPS-EPPFDGVISRAF----ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CTTTSCC-CSCEEEEECSCS----SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred chhhhcc-ccccceehhhhh----cCHHHHHHHHHHhcCCCcEEEEE
Confidence 9988643 457999998653 45678888899999999998875
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=3.6e-08 Score=72.44 Aligned_cols=118 Identities=18% Similarity=0.302 Sum_probs=85.8
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FS 103 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~ 103 (222)
.....+...++.+|||++||.|.-+.++++.. .++.++++|+++.-+...++++.+.+. .++.....|..... ..
T Consensus 93 l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g~---~~~~~~~~~~~~~~~~~ 168 (284)
T d1sqga2 93 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGM---KATVKQGDGRYPSQWCG 168 (284)
T ss_dssp THHHHHCCCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEEECCTTCTHHHHT
T ss_pred ccccccCccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhcccc---cceeeeccccccchhcc
Confidence 34456677889999999999999999999874 557899999999999999988877653 34555554443322 23
Q ss_pred CCceeEEEEc------ccccCccc----------------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 DCFFDAITMG------YGLRNVVD----------------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 ~~~~D~v~~~------~~l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.+.||.|++- +++..-++ ..++|.+..+.|||||+|+-++-+-
T Consensus 169 ~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 169 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 4679999952 22322232 3578999999999999987765443
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=9.1e-08 Score=70.56 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=69.3
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC--
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-- 103 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-- 103 (222)
....+...++.+|||++||+|.-+.+++..+++.+.++++|+++.-++..++++.+.+. .++.+...|...+...
T Consensus 86 ~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~---~~~~~~~~d~~~~~~~~~ 162 (293)
T d2b9ea1 86 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV---SCCELAEEDFLAVSPSDP 162 (293)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGSCTTCG
T ss_pred cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc---cceeeeehhhhhhccccc
Confidence 33455678899999999999999999998887778999999999999999988877654 5888988888765422
Q ss_pred -CCceeEEEEc
Q 027517 104 -DCFFDAITMG 113 (222)
Q Consensus 104 -~~~~D~v~~~ 113 (222)
.++||.|++.
T Consensus 163 ~~~~fD~VL~D 173 (293)
T d2b9ea1 163 RYHEVHYILLD 173 (293)
T ss_dssp GGTTEEEEEEC
T ss_pred ccceeeEEeec
Confidence 2569999953
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.85 E-value=1.1e-08 Score=70.43 Aligned_cols=119 Identities=21% Similarity=0.221 Sum_probs=83.4
Q ss_pred HHHHHHHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 22 WKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 22 ~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.++.+..++.. -.+.+|||+.||+|.++...+.+ + ..+++.+|.+..+++..+++....+... ....+...|..+.
T Consensus 30 vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSR-G-A~~v~fVE~~~~a~~~ik~Ni~~l~~~~-~~~~~~~~d~~~~ 106 (183)
T d2ifta1 30 VKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSR-Q-AKKVTFLELDKTVANQLKKNLQTLKCSS-EQAEVINQSSLDF 106 (183)
T ss_dssp HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHT-T-CSEEEEECSCHHHHHHHHHHHHHTTCCT-TTEEEECSCHHHH
T ss_pred HHHHHHHHhhhhcccceEeecccCccceeeeeeee-c-ceeeEEeecccchhhhHhhHHhhhcccc-ccccccccccccc
Confidence 34444444432 35779999999999999999876 2 2389999999999999999887654321 2456677775542
Q ss_pred ---CCCCCceeEEEEcccccCcccHHHHHHHHhc--ccCCCcEEEEEec
Q 027517 101 ---PFSDCFFDAITMGYGLRNVVDKRKALEESFR--VLKPGSRISVLDF 144 (222)
Q Consensus 101 ---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~--~l~~gG~l~i~~~ 144 (222)
.....+||+|++.-+... ......+..+.+ +|+++|.+++...
T Consensus 107 l~~~~~~~~fDlIFlDPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 107 LKQPQNQPHFDVVFLDPPFHF-NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp TTSCCSSCCEEEEEECCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccccccCCcccEEEechhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 223457999999777553 334566666654 7999998877543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=1.2e-08 Score=69.76 Aligned_cols=100 Identities=24% Similarity=0.320 Sum_probs=75.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--------CC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------FS 103 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~ 103 (222)
..++.+||||||++|.++..+.+..+....++++|+.+. +. .+++.++++|..+.. ..
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~------~~--------i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM------DP--------IVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC------CC--------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc------cc--------cCCceEeecccccchhhhhhhhhcc
Confidence 367889999999999999999988777779999998662 11 158899999987631 23
Q ss_pred CCceeEEEEcccccCccc-----------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 104 DCFFDAITMGYGLRNVVD-----------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
..++|+|++-.+..--.+ ....+.-+.+.|++||.+++=.+.
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 467999999777553311 135677788899999999886554
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=9.1e-08 Score=72.78 Aligned_cols=113 Identities=17% Similarity=0.308 Sum_probs=82.8
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+.+.+.+.+++...++.+|||+-||.|.++..+++. ..+|+++|.++++++.|+++....+. .|+.++.++..+
T Consensus 198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i---~n~~~~~~~~~~ 271 (358)
T d1uwva2 198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGL---QNVTFYHENLEE 271 (358)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCTTS
T ss_pred hHHHHHHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhccc---ccceeeecchhh
Confidence 444456677777788889999999999999999865 45899999999999999998866554 689999999876
Q ss_pred cC----CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 100 LP----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 100 ~~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.. ....++|+|++.-.=.- ....++.+.+. +|.-+++++
T Consensus 272 ~~~~~~~~~~~~d~vilDPPR~G---~~~~~~~l~~~-~~~~ivYVS 314 (358)
T d1uwva2 272 DVTKQPWAKNGFDKVLLDPARAG---AAGVMQQIIKL-EPIRIVYVS 314 (358)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTC---CHHHHHHHHHH-CCSEEEEEE
T ss_pred hhhhhhhhhccCceEEeCCCCcc---HHHHHHHHHHc-CCCEEEEEe
Confidence 32 22356899988432111 23455665553 566666665
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.77 E-value=1.3e-08 Score=72.25 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=67.4
Q ss_pred CCCeEEEecCCCChhHHHHHHH---hCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQ---VGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCF 106 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 106 (222)
++++|||+|++.|..+..++.. .+..++++++|+++......... .+++.++++|..+.. .....
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~--------~~~I~~i~gDs~~~~~~~~l~~~~ 151 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD--------MENITLHQGDCSDLTTFEHLREMA 151 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG--------CTTEEEEECCSSCSGGGGGGSSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc--------ccceeeeecccccHHHHHHHHhcC
Confidence 4569999999999887766543 35677999999987543222211 168999999976532 22345
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+|+|+.-.. |+......-+ .+...|++||++++.+.
T Consensus 152 ~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 152 HPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred CCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 788876543 4433222223 35679999999988654
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=3.7e-08 Score=71.73 Aligned_cols=89 Identities=20% Similarity=0.311 Sum_probs=69.5
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.....+.+.....+++.|||||+|+|.++..+++. +.+++++|+++.+++..++........ .+++++.+|+...
T Consensus 8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~--~~~~~i~~D~l~~ 82 (278)
T d1zq9a1 8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVA--SKLQVLVGDVLKT 82 (278)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTG--GGEEEEESCTTTS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccc--cchhhhHHHHhhh
Confidence 34456667777788899999999999999999987 358999999999999998876543211 4899999999887
Q ss_pred CCCCCceeEEEEcccc
Q 027517 101 PFSDCFFDAITMGYGL 116 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l 116 (222)
+.+ .++.|+.+...
T Consensus 83 ~~~--~~~~vV~NLPY 96 (278)
T d1zq9a1 83 DLP--FFDTCVANLPY 96 (278)
T ss_dssp CCC--CCSEEEEECCG
T ss_pred hhh--hhhhhhcchHH
Confidence 654 34677776654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.71 E-value=5.2e-08 Score=75.82 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=90.1
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCC------------CCcEEEEeCChhHHHHHhcchhhhhhhcC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS------------QGKVIGLDFSKNQLSMASSRQDLVSKACY 87 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~------------~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 87 (222)
+...+.+++.+...++.+|+|.+||+|.++..+.+.+.. ...+.|+|+++.....++.+..-.+.. .
T Consensus 148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~-~ 226 (425)
T d2okca1 148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG-T 226 (425)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC-S
T ss_pred hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc-c
Confidence 445667778887778889999999999999887765421 125999999999999888765433221 1
Q ss_pred CCeeEEeCCCCCcCCCCCceeEEEEcccccCccc-----------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 88 KNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD-----------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 88 ~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-----------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
....+...|..... +..+||+|+++-.+..... ...++..+.+.|++||++.++.+.
T Consensus 227 ~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 227 DRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp SCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 34566777766533 3467999999888753210 245899999999999998887653
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.68 E-value=6.3e-08 Score=68.80 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=87.2
Q ss_pred hhHHHHHHHHhh------CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeE
Q 027517 19 HRIWKRMAVSWS------GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92 (222)
Q Consensus 19 ~~~~~~~~~~~~------~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (222)
...|.+++++-+ ...+..+|+|+|+|.|.-...++-.. |+.+++.+|.+..-....+.-....+. .++.+
T Consensus 49 ~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L---~n~~i 124 (239)
T d1xdza_ 49 KEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQL---ENTTF 124 (239)
T ss_dssp HHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEE
T ss_pred HHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCC---CCcEE
Confidence 455666655532 22346799999999999998887664 678999999999877776665555443 58899
Q ss_pred EeCCCCCcCC---CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 93 VEGDALDLPF---SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 93 ~~~d~~~~~~---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+...+++... ..++||+|++.. +.....++.-+...+++||.+++.
T Consensus 125 ~~~R~E~~~~~~~~~~~~D~v~sRA----va~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 125 CHDRAETFGQRKDVRESYDIVTARA----VARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp EESCHHHHTTCTTTTTCEEEEEEEC----CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred EeehhhhccccccccccceEEEEhh----hhCHHHHHHHHhhhcccCCEEEEE
Confidence 9888876532 135799999965 446788899999999999998775
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=4.4e-08 Score=70.44 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=60.0
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
....+++.+...+++.|||||||+|.++..+++. ..+++++|+++.+++..+++.... ++++++.+|+.+++
T Consensus 9 ~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~~-----~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 9 VIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPFLG-----PKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTTTG-----GGEEEECSCGGGCC
T ss_pred HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhhhc-----cchhHHhhhhhhhc
Confidence 3456677777788999999999999999999975 458999999999999988765432 58999999998864
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.41 E-value=1.3e-06 Score=61.60 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=69.2
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCCcCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFS 103 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~ 103 (222)
++.+.....|..+|+|+|||.|.++..++... +...+.++++--+..+... ....... .-+.+... |+.. .+
T Consensus 57 ~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~-~~~~~~~---ni~~~~~~~dv~~--l~ 129 (257)
T d2p41a1 57 WFVERNLVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPI-PMSTYGW---NLVRLQSGVDVFF--IP 129 (257)
T ss_dssp HHHHTTSSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCC-CCCSTTG---GGEEEECSCCTTT--SC
T ss_pred HHHHhcCccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCc-ccccccc---ccccchhhhhHHh--cC
Confidence 34444556788899999999999999998762 3347788877322111000 0000010 12233332 2222 24
Q ss_pred CCceeEEEEcccccCccc-------HHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 104 DCFFDAITMGYGLRNVVD-------KRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~-------~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
....|+|+|-.+-+ -++ ..++++-+.++|+|||.+++=.+.+..
T Consensus 130 ~~~~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~ 180 (257)
T d2p41a1 130 PERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM 180 (257)
T ss_dssp CCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS
T ss_pred CCcCCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCC
Confidence 56799999976543 222 135677778899999998876665433
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=1e-06 Score=70.21 Aligned_cols=126 Identities=15% Similarity=0.091 Sum_probs=84.0
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCC-----------------CcEEEEeCChhHHHHHhcchhhh
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ-----------------GKVIGLDFSKNQLSMASSRQDLV 82 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-----------------~~~~~~D~~~~~~~~~~~~~~~~ 82 (222)
+...+.+++.+...++.+|+|.+||+|.++....+.+... ..++|+|+++.+...++-++.-.
T Consensus 150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~ 229 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH 229 (524)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence 4455677778877888899999999999998766643211 15899999999998887655322
Q ss_pred hhhc--CCCeeEEeCCCCCcC-CCCCceeEEEEcccccCccc--------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 83 SKAC--YKNIEWVEGDALDLP-FSDCFFDAITMGYGLRNVVD--------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 83 ~~~~--~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~--------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+... ...-.....+....+ ....+||+|+++-.+..... .-.++.++.+.|+|||++.++.+.
T Consensus 230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~ 309 (524)
T d2ar0a1 230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 309 (524)
T ss_dssp TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence 2110 011223333433211 23457999999887753211 235899999999999998887653
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.26 E-value=1.8e-06 Score=65.52 Aligned_cols=106 Identities=18% Similarity=0.110 Sum_probs=78.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh------------cCCCeeEEeCCCCCcC
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA------------CYKNIEWVEGDALDLP 101 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~------------~~~~i~~~~~d~~~~~ 101 (222)
++.+|||..||+|..+.+.+... +..+|+..|+|+++++.+++++...... ....+.+.+.|+....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 56799999999999999888875 3458999999999999999987654321 1123555666655432
Q ss_pred -CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
...+.||+|..-- +-.+..+++...+.++.||.|.++..
T Consensus 124 ~~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 124 AERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HhhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEec
Confidence 1245799998753 34557788889999999999988743
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.93 E-value=5.7e-05 Score=50.36 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=66.8
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 101 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----- 101 (222)
......++.+|+=+|+|. |..+..+++.. +.+++++|.+++.++.+++.- ...++..+-.+..
T Consensus 21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~G---------a~~~i~~~~~~~~~~~~~ 89 (166)
T d1llua2 21 KQTNARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLG---------ASLTVNARQEDPVEAIQR 89 (166)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTT---------CSEEEETTTSCHHHHHHH
T ss_pred HHhCCCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhccC---------ccccccccchhHHHHHHH
Confidence 446678899999999987 66677888875 579999999999998887652 2233332222210
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
...+.++.|.+... ...++...+.|+|+|++++.-..
T Consensus 90 ~~~g~~~~i~~~~~-------~~~~~~~~~~l~~~G~iv~~G~~ 126 (166)
T d1llua2 90 DIGGAHGVLVTAVS-------NSAFGQAIGMARRGGTIALVGLP 126 (166)
T ss_dssp HHSSEEEEEECCSC-------HHHHHHHHTTEEEEEEEEECCCC
T ss_pred hhcCCccccccccc-------chHHHHHHHHhcCCcEEEEEEec
Confidence 11233444444332 34677888999999999886543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.91 E-value=6.8e-05 Score=50.83 Aligned_cols=105 Identities=20% Similarity=0.179 Sum_probs=69.3
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc------
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------ 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------ 100 (222)
+.....++.+||-+|||. |..+..+++..+. .+|+++|.+++.++.+++.- .-.++...-.+.
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~lG---------a~~vi~~~~~~~~~~~~~ 91 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEIG---------ADLTLNRRETSVEERRKA 91 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHTT---------CSEEEETTTSCHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCccchhheeccccccc-cccccccccccccccccccc---------ceEEEeccccchHHHHHH
Confidence 444567899999999986 7788888888632 27999999999999887652 112222211110
Q ss_pred --C-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 101 --P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 101 --~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
. .....+|+|+-.-.- ...++...+.+++||++++.....+.
T Consensus 92 i~~~~~~~g~Dvvid~vG~------~~~~~~a~~~l~~~G~iv~~G~~~~~ 136 (182)
T d1vj0a2 92 IMDITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAGVAVPQ 136 (182)
T ss_dssp HHHHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCCCSCC
T ss_pred HHHhhCCCCceEEeecCCc------hhHHHHHHHHhcCCCEEEEEeecCCC
Confidence 0 122458998853321 33567788899999999887654433
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.84 E-value=0.00015 Score=48.49 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=70.3
Q ss_pred HHhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c----
Q 027517 27 VSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L---- 100 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~---- 100 (222)
+...+..++.+||-+|||. |..+..+++.. +.+++++|.+++-++.+++.-. ...+...+..+ .
T Consensus 19 ~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~ga--------~~~~~~~~~~~~~~~~~ 88 (170)
T d1e3ja2 19 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNCGA--------DVTLVVDPAKEEESSII 88 (170)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTC--------SEEEECCTTTSCHHHHH
T ss_pred HHHhCCCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHcCC--------cEEEeccccccccchhh
Confidence 3456778899999999995 67777788775 5699999999999999887631 22222211111 0
Q ss_pred ----CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 101 ----PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 101 ----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
......+|+|+-.-. -...+....+.++|+|++++.....
T Consensus 89 ~~~~~~~g~g~D~vid~~g------~~~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 89 ERIRSAIGDLPNVTIDCSG------NEKCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp HHHHHHSSSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred hhhhcccccCCceeeecCC------ChHHHHHHHHHHhcCCceEEEecCC
Confidence 011245888875332 1456788889999999998876543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.82 E-value=0.00023 Score=47.73 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=70.4
Q ss_pred HHHhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----
Q 027517 26 AVSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---- 100 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---- 100 (222)
+....+.+|+.+||-+|||. |..+..+++..+. ..++.+|.+++-++.+++.- ...++..+-.+.
T Consensus 20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~G---------a~~~i~~~~~~~~~~i 89 (174)
T d1f8fa2 20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLG---------ATHVINSKTQDPVAAI 89 (174)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHT---------CSEEEETTTSCHHHHH
T ss_pred HHHhhCCCCCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcC---------CeEEEeCCCcCHHHHH
Confidence 44556778999999999986 5566777777643 36888999999988888652 223443332221
Q ss_pred -CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 101 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
...++.+|+|+-+-. ....++...+.++|+|++++...
T Consensus 90 ~~~t~gg~D~vid~~G------~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 90 KEITDGGVNFALESTG------SPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp HHHTTSCEEEEEECSC------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHcCCCCcEEEEcCC------cHHHHHHHHhcccCceEEEEEee
Confidence 122346999885332 14567788899999999988654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.77 E-value=6.6e-05 Score=53.19 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=63.0
Q ss_pred HHHHhhCCCCC--CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh------cCCCeeEEeCC
Q 027517 25 MAVSWSGAKTG--DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA------CYKNIEWVEGD 96 (222)
Q Consensus 25 ~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~d 96 (222)
.+...++..++ .+|||+-||.|..+..++.. +++|+++|-++......+..+...... ...+++++.+|
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D 153 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence 34444444433 48999999999999999976 569999999997655555433322110 11478999999
Q ss_pred CCCc-CCCCCceeEEEEcccccCc
Q 027517 97 ALDL-PFSDCFFDAITMGYGLRNV 119 (222)
Q Consensus 97 ~~~~-~~~~~~~D~v~~~~~l~~~ 119 (222)
..+. ....++||+|++--.+.+-
T Consensus 154 s~~~L~~~~~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 154 SLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCCC
T ss_pred HHHHHhccCCCCCEEEECCCCccc
Confidence 7663 3234679999987766544
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=97.76 E-value=0.00045 Score=50.38 Aligned_cols=120 Identities=14% Similarity=-0.039 Sum_probs=78.1
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL- 100 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~- 100 (222)
+...+.+.+.. ....|+.+|||.-.-...+. .+++..++-+|. |++++..++.+...+.....+...+..|+.+.
T Consensus 78 ~D~~~~~~~~~-g~~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~ 153 (297)
T d2uyoa1 78 FDTYFNNAVID-GIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDW 153 (297)
T ss_dssp HHHHHHHHHHT-TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCH
T ss_pred HHHHHHHHHhh-CCCeEEEeCcccCChhhhcC--CCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchH
Confidence 33344444433 33467779999877666552 134557888884 88888777776554332224567777887652
Q ss_pred -------CCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecC
Q 027517 101 -------PFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 101 -------~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.+.....-++++-+++.+++ +...+++.+.+...||+.+++....
T Consensus 154 ~~~L~~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~ 207 (297)
T d2uyoa1 154 PPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 207 (297)
T ss_dssp HHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred HHHHHhcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 12223456777777888885 4678899999999999998765433
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.74 E-value=2.1e-05 Score=52.75 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=67.5
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCCc-CCCC
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDL-PFSD 104 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~-~~~~ 104 (222)
......++++||-+|+|. |..+..+++.. +++++++|.+++.++.+++.-. . .++.. +..+. ....
T Consensus 21 ~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~lGa--------~-~~i~~~~~~~~~~~~~ 89 (168)
T d1piwa2 21 VRNGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKMGA--------D-HYIATLEEGDWGEKYF 89 (168)
T ss_dssp HHTTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHHTC--------S-EEEEGGGTSCHHHHSC
T ss_pred HHhCcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhccCC--------c-EEeeccchHHHHHhhh
Confidence 345778999999999984 77778888876 5699999999999988876521 1 22221 11111 1123
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+.+|.++..-.-.+-. .+....+.++|+|++++....
T Consensus 90 ~~~d~vi~~~~~~~~~----~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1piwa2 90 DTFDLIVVCASSLTDI----DFNIMPKAMKVGGRIVSISIP 126 (168)
T ss_dssp SCEEEEEECCSCSTTC----CTTTGGGGEEEEEEEEECCCC
T ss_pred cccceEEEEecCCccc----hHHHHHHHhhccceEEEeccc
Confidence 5699888643322111 134578899999999887543
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.72 E-value=0.00044 Score=51.58 Aligned_cols=112 Identities=16% Similarity=0.188 Sum_probs=69.4
Q ss_pred CeEEEecCCCChhHHH--------HHHHh-------CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCC--eeEEeCCCC
Q 027517 36 DNVLDVCCGSGDLSFL--------LSEQV-------GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN--IEWVEGDAL 98 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~--------l~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~d~~ 98 (222)
-+|.|+||.+|..+.. +.+.+ .+..+|..-|.-..-.+..=+.+..... ..++ +.-+.+.+.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~-~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND-VDGVCFINGVPGSFY 131 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS-CTTCEEEEEEESCSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcccccc-CCCCeEEEecCCchh
Confidence 5799999999988732 21111 1233677778655433333222211110 0012 233456666
Q ss_pred CcCCCCCceeEEEEcccccCccc---------------------------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 99 DLPFSDCFFDAITMGYGLRNVVD---------------------------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~~~~---------------------------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.--+|.++.+++++.+++|+++. ...+|+.=.+-|+|||+++++...
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 64578899999999999998742 124677777789999999998877
Q ss_pred CCC
Q 027517 146 KST 148 (222)
Q Consensus 146 ~~~ 148 (222)
+++
T Consensus 212 r~~ 214 (359)
T d1m6ex_ 212 RRS 214 (359)
T ss_dssp CSS
T ss_pred cCC
Confidence 644
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00028 Score=47.10 Aligned_cols=105 Identities=16% Similarity=0.234 Sum_probs=70.3
Q ss_pred HHhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----
Q 027517 27 VSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 101 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (222)
++..+..++.+|+=+|||+ |..+..+++..+ ..+++++|.+++-++.+++.- .-.++..+-.+..
T Consensus 19 ~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~G---------a~~~~~~~~~~~~~~~~ 88 (171)
T d1pl8a2 19 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEIG---------ADLVLQISKESPQEIAR 88 (171)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTT---------CSEEEECSSCCHHHHHH
T ss_pred HHHhCCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHhC---------Ccccccccccccccccc
Confidence 4456778899999999997 555667777752 237999999999999988752 1122222222210
Q ss_pred ----CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 102 ----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 102 ----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
.....+|+|+-.-.- ...++...+.+++||++++......
T Consensus 89 ~~~~~~g~g~Dvvid~~G~------~~~~~~a~~~~~~gG~iv~~G~~~~ 132 (171)
T d1pl8a2 89 KVEGQLGCKPEVTIECTGA------EASIQAGIYATRSGGTLVLVGLGSE 132 (171)
T ss_dssp HHHHHHTSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECSCCCS
T ss_pred cccccCCCCceEEEeccCC------chhHHHHHHHhcCCCEEEEEecCCC
Confidence 012458988864321 4578888999999999988765443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.64 E-value=0.00011 Score=49.32 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=70.2
Q ss_pred HHhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 27 VSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
++.....++.+||-+|||. |..+..+++..+. .+|+++|.+++-++.+++.- -..++...-.+.
T Consensus 20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lG---------a~~~i~~~~~~~~~~v~ 89 (174)
T d1jqba2 20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYG---------ATDILNYKNGHIEDQVM 89 (174)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHT---------CSEEECGGGSCHHHHHH
T ss_pred HHHhCCCCCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHhhC---------ccccccccchhHHHHHH
Confidence 4556788999999999997 7778888887532 37999999999888887652 122332221111
Q ss_pred C-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 101 P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 101 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
. .....+|+|+-+-.- ...++...+.++|+|++++.-...
T Consensus 90 ~~t~g~G~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G~~~ 130 (174)
T d1jqba2 90 KLTNGKGVDRVIMAGGG------SETLSQAVKMVKPGGIISNINYHG 130 (174)
T ss_dssp HHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCCCC
T ss_pred HHhhccCcceEEEccCC------HHHHHHHHHHHhcCCEEEEEeecC
Confidence 1 122449998864432 235667778899999998876544
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.63 E-value=0.00015 Score=53.66 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=48.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
.+..|||||+|.|.++..+.+..++ .+++++|+++...+..++.... .++.++..|+..
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~~------~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFEG------SPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTTT------SSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhccC------CCcEEEeCchhh
Confidence 4668999999999999999987422 3899999999999988776531 478999999865
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=0.00044 Score=45.97 Aligned_cols=101 Identities=19% Similarity=0.154 Sum_probs=67.8
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CCCCC
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDC 105 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~ 105 (222)
......++++||=+|||. |..+..+++.+ +.+++++|.+++-.+.+++.- .-.++...-.+. ....+
T Consensus 24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~lG---------ad~~i~~~~~~~~~~~~~ 92 (168)
T d1uufa2 24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKALG---------ADEVVNSRNADEMAAHLK 92 (168)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHT---------CSEEEETTCHHHHHTTTT
T ss_pred HHhCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhccC---------CcEEEECchhhHHHHhcC
Confidence 456778999999999986 77788888875 668889999998887776542 223333222211 12235
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.+|.++-.-.-. ..+....+.++++|++++.-..
T Consensus 93 ~~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1uufa2 93 SFDFILNTVAAP------HNLDDFTTLLKRDGTMTLVGAP 126 (168)
T ss_dssp CEEEEEECCSSC------CCHHHHHTTEEEEEEEEECCCC
T ss_pred CCceeeeeeecc------hhHHHHHHHHhcCCEEEEeccC
Confidence 699988644321 2355677899999999886543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.58 E-value=0.00039 Score=46.16 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=64.4
Q ss_pred HHhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----
Q 027517 27 VSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---- 101 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (222)
+...+..|+.+||-.|+|+ |.....+++.. +.+++++|.+++-++.+++.- ...++...-.+..
T Consensus 20 l~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~~G---------a~~~~~~~~~~~~~~~~ 88 (168)
T d1rjwa2 20 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKELG---------ADLVVNPLKEDAAKFMK 88 (168)
T ss_dssp HHHHTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTT---------CSEEECTTTSCHHHHHH
T ss_pred HHHhCCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhhcC---------cceecccccchhhhhcc
Confidence 3455778999999999998 44456666663 568999999999988887652 1122211111110
Q ss_pred -CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
...+.+|+|++... ...+....+.++|+|++++....
T Consensus 89 ~~~~~~~~~v~~~~~-------~~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 89 EKVGGVHAAVVTAVS-------KPAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp HHHSSEEEEEESSCC-------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred cccCCCceEEeecCC-------HHHHHHHHHHhccCCceEecccc
Confidence 11233444443221 45678888999999999886544
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.53 E-value=0.0011 Score=44.10 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=69.8
Q ss_pred HHhhCCCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---
Q 027517 27 VSWSGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--- 101 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 101 (222)
+......++.+||=+|| | .|..+..+++..+ ..+|+++|.+++-++.+++.- --.++..+-.+..
T Consensus 20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~~G---------a~~~i~~~~~~~~~~~ 89 (170)
T d1jvba2 20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRAG---------ADYVINASMQDPLAEI 89 (170)
T ss_dssp HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHHT---------CSEEEETTTSCHHHHH
T ss_pred HHHhCCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHHcC---------CceeeccCCcCHHHHH
Confidence 44567788999999997 4 3556666777653 358999999999888887652 1133333322210
Q ss_pred ---CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 102 ---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 102 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
...+.+|+|+-... -...++...+.++|+|++++.-....
T Consensus 90 ~~~~~~~~~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~~~~ 132 (170)
T d1jvba2 90 RRITESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGLFGA 132 (170)
T ss_dssp HHHTTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCSSCC
T ss_pred HHHhhcccchhhhcccc------cchHHHhhhhhcccCCEEEEeccccC
Confidence 12356998886432 14566778899999999988765443
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.51 E-value=0.00038 Score=47.54 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=72.9
Q ss_pred HHhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 27 VSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
++....+++.+||-+|||. |..+..+++.. ...+++++|.+++-++.+++.- ...++...-.++
T Consensus 18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~G---------a~~~~~~~~~~~~~~i~ 87 (195)
T d1kola2 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQG---------FEIADLSLDTPLHEQIA 87 (195)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTT---------CEEEETTSSSCHHHHHH
T ss_pred HHHhCCCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhcc---------ccEEEeCCCcCHHHHHH
Confidence 4556788999999999998 55667777764 3448999999999999988762 112222111111
Q ss_pred C-CCCCceeEEEEccccc------Cc---ccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 101 P-FSDCFFDAITMGYGLR------NV---VDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 101 ~-~~~~~~D~v~~~~~l~------~~---~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
. .....+|+++-.-... +. ......++.+.+.++|||++++.-...
T Consensus 88 ~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~ 143 (195)
T d1kola2 88 ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV 143 (195)
T ss_dssp HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred HHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence 0 1234589988533211 11 123578999999999999998876543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.39 E-value=3.5e-05 Score=50.97 Aligned_cols=98 Identities=12% Similarity=0.068 Sum_probs=69.4
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
++.+|+-||+|. |..+...+..+ +.+|+.+|.+++.++..+.... .+++....+-..+...-...|+|+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~-------~~~~~~~~~~~~l~~~~~~aDivI~ 101 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG-------SRVELLYSNSAEIETAVAEADLLIG 101 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-------GGSEEEECCHHHHHHHHHTCSEEEE
T ss_pred CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhc-------ccceeehhhhhhHHHhhccCcEEEE
Confidence 467999999997 67777888775 6799999999999888776543 3455555443333211135799998
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
.-.+.--+-+.-+-+++.+.||||..++
T Consensus 102 aalipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 102 AVLVPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred eeecCCcccCeeecHHHHhhcCCCcEEE
Confidence 7765444445556678899999998775
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00044 Score=46.28 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=66.9
Q ss_pred HHhhCCCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----
Q 027517 27 VSWSGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---- 100 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---- 100 (222)
.+..+..++.+||-.|+ | .|..+..+++.. +.++++++.+++..+.+++.- --.++...-.++
T Consensus 21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~~G---------a~~vi~~~~~~~~~~i 89 (174)
T d1yb5a2 21 IHSACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQNG---------AHEVFNHREVNYIDKI 89 (174)
T ss_dssp HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT---------CSEEEETTSTTHHHHH
T ss_pred HHHhCCCCCCEEEEEecccccccccccccccc--CcccccccccccccccccccC---------cccccccccccHHHHh
Confidence 34456788999999996 3 467778888875 678999998888888777642 112332221111
Q ss_pred --CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
....+.+|+|+.+.. ...++...+.++|+|+++...
T Consensus 90 ~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 90 KKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp HHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred hhhhccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEEe
Confidence 123456999987542 345777888999999998763
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.29 E-value=0.0018 Score=43.24 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=70.9
Q ss_pred HHhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c----
Q 027517 27 VSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L---- 100 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~---- 100 (222)
......+++.+|+=+|||. |..+..+++..+ ...++.+|.+++-++.+++.- ...++...-.+ .
T Consensus 21 ~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~G---------a~~~i~~~~~~~~~~~~ 90 (174)
T d1e3ia2 21 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKALG---------ATDCLNPRELDKPVQDV 90 (174)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHHH
T ss_pred HHhhCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHhC---------CCcccCCccchhhhhhh
Confidence 3455678999999999998 778888888863 237999999999998888762 22223211111 0
Q ss_pred --CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecCC
Q 027517 101 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFNK 146 (222)
Q Consensus 101 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~~ 146 (222)
......+|+|+-+-. ....+....+.+++| |++++.-...
T Consensus 91 ~~~~~~~G~d~vie~~G------~~~~~~~a~~~~~~g~G~~v~vG~~~ 133 (174)
T d1e3ia2 91 ITELTAGGVDYSLDCAG------TAQTLKAAVDCTVLGWGSCTVVGAKV 133 (174)
T ss_dssp HHHHHTSCBSEEEESSC------CHHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred HhhhhcCCCcEEEEecc------cchHHHHHHHHhhcCCeEEEecCCCC
Confidence 012345888875332 256788889999996 9998876543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.23 E-value=0.0025 Score=42.29 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=67.0
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----C-CCC
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----P-FSD 104 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~-~~~ 104 (222)
...|+.+||-+|+|. |..+..+++..+ ...++++|.+++-++.+++.. ...++..+-... . ...
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~g---------a~~~i~~~~~~~~~~~~~~~~ 98 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERLG---------ADHVVDARRDPVKQVMELTRG 98 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHTT---------CSEEEETTSCHHHHHHHHTTT
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhcc---------cceeecCcccHHHHHHHhhCC
Confidence 357889999999987 455567777753 347899999999888888753 223343322111 1 123
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
..+|+|+-...- ...++...+.++++|++++.-..
T Consensus 99 ~g~d~vid~~g~------~~~~~~a~~~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 99 RGVNVAMDFVGS------QATVDYTPYLLGRMGRLIIVGYG 133 (172)
T ss_dssp CCEEEEEESSCC------HHHHHHGGGGEEEEEEEEECCCS
T ss_pred CCceEEEEecCc------chHHHHHHHHHhCCCEEEEEeCc
Confidence 458988864431 44678889999999999886543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.20 E-value=0.0042 Score=41.33 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=66.9
Q ss_pred HHHhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----
Q 027517 26 AVSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---- 100 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---- 100 (222)
+.+.....++++||=+|||. |..+..+++..+ ..+|+++|.+++-++.+++.- ...++...-.+.
T Consensus 19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~lG---------a~~~i~~~~~d~~~~~ 88 (174)
T d1p0fa2 19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIELG---------ATECLNPKDYDKPIYE 88 (174)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHHcC---------CcEEEcCCCchhHHHH
Confidence 44556788999999999997 445566777753 248999999999999998762 223332111110
Q ss_pred ---CCCCCceeEEEEcccccCcccHHHHHHHHhccc-CCCcEEEEEecCCCC
Q 027517 101 ---PFSDCFFDAITMGYGLRNVVDKRKALEESFRVL-KPGSRISVLDFNKST 148 (222)
Q Consensus 101 ---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l-~~gG~l~i~~~~~~~ 148 (222)
....+.+|+|+-.-. . ...+......+ +++|.+++.-...+.
T Consensus 89 ~~~~~~~~G~d~vid~~g-----~-~~~~~~~~~~~~~~~G~~v~vG~~~~~ 134 (174)
T d1p0fa2 89 VICEKTNGGVDYAVECAG-----R-IETMMNALQSTYCGSGVTVVLGLASPN 134 (174)
T ss_dssp HHHHHTTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECCCCCTT
T ss_pred HHHHhcCCCCcEEEEcCC-----C-chHHHHHHHHHHHhcCceEEEEEecCc
Confidence 112345888875332 1 34455555555 556998887655433
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.0039 Score=41.54 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=66.9
Q ss_pred HHhhCCCCCCeEEEecCCC--ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---
Q 027517 27 VSWSGAKTGDNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--- 101 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 101 (222)
.+....+|+.+||=.|+|. |.....+++.. +.++++++.+++-.+.+++.- .-.++...-.++.
T Consensus 21 ~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~lG---------a~~vi~~~~~d~~~~v 89 (179)
T d1qora2 21 RKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALKAG---------AWQVINYREEDLVERL 89 (179)
T ss_dssp HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHT---------CSEEEETTTSCHHHHH
T ss_pred HHHhCCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHhcC---------CeEEEECCCCCHHHHH
Confidence 3445678899999987665 67778888885 679999999999988887652 1233332222211
Q ss_pred ---CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 102 ---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.....+|+|+-...- ..+......++++|++++..
T Consensus 90 ~~~t~g~g~d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 90 KEITGGKKVRVVYDSVGR-------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp HHHTTTCCEEEEEECSCG-------GGHHHHHHTEEEEEEEEECC
T ss_pred HHHhCCCCeEEEEeCccH-------HHHHHHHHHHhcCCeeeecc
Confidence 124568988865432 23567788999999987644
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.92 E-value=0.00036 Score=46.70 Aligned_cols=106 Identities=19% Similarity=0.098 Sum_probs=63.9
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh---hcCCCeeEEeCCCCCcC--C-----
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK---ACYKNIEWVEGDALDLP--F----- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~d~~~~~--~----- 102 (222)
++.+|+-||+|. |..+...+..+ ++.|+.+|.+++.++..+......-. ......+...+.+.... +
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 456999999997 66677777775 77999999999999888876432110 00000000000000000 0
Q ss_pred -----CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 103 -----SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 103 -----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
.-...|+|+..-.+.--+.+.-+-+++.+.||||..++=
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD 149 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID 149 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence 012479999876655444445566788999999988753
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.72 E-value=0.0054 Score=40.47 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=57.1
Q ss_pred eEEEecCCC-Ch-hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 37 NVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 37 ~vLdiG~G~-G~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
+|+-+|||. |. ++..+.+. +...+++++|.+++.++.+++.- .+.....+..... ....|+|+..-
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~~~---------~~~~~~~~~~~~~--~~~~dlIila~ 70 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDLG---------IIDEGTTSIAKVE--DFSPDFVMLSS 70 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHTT---------SCSEEESCGGGGG--GTCCSEEEECS
T ss_pred EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHHhh---------cchhhhhhhhhhh--ccccccccccC
Confidence 688899996 43 34444443 44568999999999999888762 2322333332221 23469998755
Q ss_pred cccCcccHHHHHHHHhcccCCCcEE
Q 027517 115 GLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
.. .....++.++...++++..+
T Consensus 71 p~---~~~~~vl~~l~~~~~~~~ii 92 (171)
T d2g5ca2 71 PV---RTFREIAKKLSYILSEDATV 92 (171)
T ss_dssp CH---HHHHHHHHHHHHHSCTTCEE
T ss_pred Cc---hhhhhhhhhhhccccccccc
Confidence 43 24567788899899887554
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=96.71 E-value=0.0062 Score=45.55 Aligned_cols=82 Identities=11% Similarity=0.044 Sum_probs=50.6
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhC------CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVG------SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
...++..+|+|+|+|+|.++..+++.+. ...+++.+|.|+...+.-++.+... .++.+. .++.+.+
T Consensus 75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~-----~~i~w~-~~~~~~~-- 146 (365)
T d1zkda1 75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWH-DSFEDVP-- 146 (365)
T ss_dssp TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEE-SSGGGSC--
T ss_pred hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc-----ccceec-cChhhcc--
Confidence 3444556899999999999988877653 1236899999998777766655422 234332 2333332
Q ss_pred CCceeEEEEcccccCcc
Q 027517 104 DCFFDAITMGYGLRNVV 120 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~ 120 (222)
...-+|+++-.+..+|
T Consensus 147 -~~~g~iiaNE~fDAlP 162 (365)
T d1zkda1 147 -EGPAVILANEYFDVLP 162 (365)
T ss_dssp -CSSEEEEEESSGGGSC
T ss_pred -cCCeEEEecccCcccc
Confidence 1124556665555554
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.71 E-value=0.0048 Score=41.19 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=65.6
Q ss_pred HHhhCCCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---
Q 027517 27 VSWSGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--- 101 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 101 (222)
.+..+..++++||=.|+ | .|..+..+++.. +.+++++.-+++..+.+++.- .-.++...-.++.
T Consensus 18 ~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~~G---------a~~vi~~~~~~~~~~v 86 (183)
T d1pqwa_ 18 CEVGRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSRLG---------VEYVGDSRSVDFADEI 86 (183)
T ss_dssp HTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHTTC---------CSEEEETTCSTHHHHH
T ss_pred HHHhCCCCCCEEEEECCCCCcccccchhhccc--cccceeeeccccccccccccc---------ccccccCCccCHHHHH
Confidence 34456788899999874 3 367788888886 568888888888777777542 1223322222210
Q ss_pred ---CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 102 ---FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 102 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.....+|+|+.+.. ...++.+.+.|+++|+++..
T Consensus 87 ~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 87 LELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred HHHhCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence 23456999997554 23567778899999998875
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.67 E-value=0.015 Score=38.61 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=64.7
Q ss_pred HHHhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCc---
Q 027517 26 AVSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDL--- 100 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~--- 100 (222)
+.+..+.+++++|+-+|||. |..+..+++.. ...+|+++|.+++-++.+++.-+ ..++. .+....
T Consensus 21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~kl~~Ak~~GA---------~~~in~~~~~~~~~~ 90 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKDKFEKAMAVGA---------TECISPKDSTKPISE 90 (176)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHHTC---------SEEECGGGCSSCHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHc-CCceEEEecCcHHHHHHHHhcCC---------cEEECccccchHHHH
Confidence 34455678899999999997 44556667664 23589999999999999998732 22222 111110
Q ss_pred --C-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 101 --P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 101 --~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
. .....+|+++-... ........+....+++|++++.-....
T Consensus 91 ~~~~~~g~G~d~vi~~~g-----~~~~~~~a~~~~~~~~G~~v~vG~~~~ 135 (176)
T d1d1ta2 91 VLSEMTGNNVGYTFEVIG-----HLETMIDALASCHMNYGTSVVVGVPPS 135 (176)
T ss_dssp HHHHHHTSCCCEEEECSC-----CHHHHHHHHTTSCTTTCEEEECSCCCT
T ss_pred HHHHhccccceEEEEeCC-----chHHHHHHHHHhhcCCeEEEEEEcccc
Confidence 0 12245887775332 222333334445566699888655443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.62 E-value=0.015 Score=38.70 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=69.4
Q ss_pred HHHHhhCCCCCCeEEEecCCC--ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--
Q 027517 25 MAVSWSGAKTGDNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-- 100 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-- 100 (222)
.+.+..+.+++++||-.|++. |..+..+++.. +++++++.-+++..+.+++.- .-.++..+-.+.
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~G---------a~~vi~~~~~~~~~ 88 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQIG---------FDAAFNYKTVNSLE 88 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT---------CSEEEETTSCSCHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhhh---------hhhhcccccccHHH
Confidence 344566778999999888866 56677888875 679999999988887777663 222333222221
Q ss_pred ----CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 ----PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
....+.+|+|+-+-. ...++...+.|+++|.++..-
T Consensus 89 ~~~~~~~~~Gvd~v~D~vG-------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 89 EALKKASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp HHHHHHCTTCEEEEEESSC-------HHHHHHHGGGEEEEEEEEECC
T ss_pred HHHHHhhcCCCceeEEecC-------chhhhhhhhhccCCCeEEeec
Confidence 113345999886432 346788999999999998753
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.52 E-value=0.0035 Score=44.20 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=42.7
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD 80 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (222)
+.+++... .++..|||.-||+|..+....+. +.+++|+|++++.++.|++++.
T Consensus 203 ~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 203 ERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence 33444443 67889999999999999876654 5699999999999999998863
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.43 E-value=0.0025 Score=46.48 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=43.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD 80 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (222)
+.++... ..++..|||.-||+|..+....+. +.+++|+|++++.++.+++++.
T Consensus 241 ~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~ 293 (320)
T d1booa_ 241 EFFIRML-TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFL 293 (320)
T ss_dssp HHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGS
T ss_pred HHhhhhc-ccCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHH
Confidence 3444444 367889999999999999877654 6699999999999999999874
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.41 E-value=0.038 Score=36.31 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=67.0
Q ss_pred HHHhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC-CCc---
Q 027517 26 AVSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDL--- 100 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~--- 100 (222)
+.+....+|+.+||=.|||. |..+..+++..+ ...|+++|.+++-++.+++.- ...++...- .+.
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~lG---------a~~~i~~~~~~~~~~~ 89 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEFG---------ATECINPQDFSKPIQE 89 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHHT---------CSEEECGGGCSSCHHH
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHHhC---------CcEEEeCCchhhHHHH
Confidence 44556778999999999885 455667777753 247999999999988888652 222332211 110
Q ss_pred ---CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 101 ---PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 ---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
....+.+|+|+-+-. ....++.....+++||.+++...
T Consensus 90 ~~~~~~~~g~D~vid~~G------~~~~~~~~~~~~~~g~~~~~v~~ 130 (176)
T d2fzwa2 90 VLIEMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVVVG 130 (176)
T ss_dssp HHHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred HHHHHcCCCCcEeeecCC------CHHHHHHHHHhhcCCceeEEEEe
Confidence 012345899886432 14567788889999988766543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.35 E-value=0.013 Score=38.35 Aligned_cols=85 Identities=20% Similarity=0.104 Sum_probs=54.5
Q ss_pred eEEEecCCC-C-hhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 37 NVLDVCCGS-G-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 37 ~vLdiG~G~-G-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
+|.=||+|. | .++..+.+ .+.+|+++|.+++.++.+++.- .+.....+...+ ...|+|+..-
T Consensus 2 kI~iIG~G~mG~~lA~~l~~---~g~~V~~~d~~~~~~~~a~~~~---------~~~~~~~~~~~~----~~~DiIilav 65 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRR---RGHYLIGVSRQQSTCEKAVERQ---------LVDEAGQDLSLL----QTAKIIFLCT 65 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHTT---------SCSEEESCGGGG----TTCSEEEECS
T ss_pred EEEEEeecHHHHHHHHHHHH---CCCEEEEEECCchHHHHHHHhh---------ccceeeeecccc----cccccccccC
Confidence 677888885 2 33445543 3669999999999888876642 222222233322 3469988744
Q ss_pred cccCcccHHHHHHHHhcccCCCcEEE
Q 027517 115 GLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
. ......+++++...++++..++
T Consensus 66 p---~~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 66 P---IQLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp C---HHHHHHHHHHHGGGSCTTCEEE
T ss_pred c---Hhhhhhhhhhhhhhccccccee
Confidence 3 2345778899998888877553
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.09 E-value=0.088 Score=34.41 Aligned_cols=103 Identities=12% Similarity=0.144 Sum_probs=61.7
Q ss_pred HHHhhCCCCCCeEEEecCCCChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---- 100 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---- 100 (222)
+.+....+++.+|+=+|+|.+..+ ..+++.. ....|+++|.+++-++.+++.- ...++..+-.+.
T Consensus 20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~-g~~~Vi~~~~~~~rl~~a~~~G---------Ad~~in~~~~~~~~~~ 89 (175)
T d1cdoa2 20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFG---------ATDFVNPNDHSEPISQ 89 (175)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTT---------CCEEECGGGCSSCHHH
T ss_pred HHHhhCCCCCCEEEEEecCCccchHHHHHHHH-hhchheeecchHHHHHHHHHcC---------CcEEEcCCCcchhHHH
Confidence 344557789999999999986554 4445543 3458999999999999888762 223332211111
Q ss_pred ---CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEec
Q 027517 101 ---PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 144 (222)
Q Consensus 101 ---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~ 144 (222)
......+|+|+-.-.- ...+......++++ |.+++.-.
T Consensus 90 ~~~~~~~~G~d~vid~~G~------~~~~~~a~~~~~~g~~~~~~~g~ 131 (175)
T d1cdoa2 90 VLSKMTNGGVDFSLECVGN------VGVMRNALESCLKGWGVSVLVGW 131 (175)
T ss_dssp HHHHHHTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHhhccCCcceeeeecCC------HHHHHHHHHHhhCCCcceeEEEe
Confidence 0112458888754331 34455666666665 55544433
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.07 E-value=0.0051 Score=43.94 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=44.4
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 82 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (222)
..+++.. ..++..|||.-||+|..+....+. +.+++|+|++++..+.+++++...
T Consensus 198 ~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 198 ERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred HHHHHhh-cCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3344443 367889999999999998877765 569999999999999999998653
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.05 E-value=0.16 Score=37.02 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=79.0
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh------------------hh
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS------------------KA 85 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~------------------~~ 85 (222)
..+...+...+...|+-+|||.=.....+.... ++..++-+|. |+.++.-++.+...+ ..
T Consensus 86 ~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~-~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~ 163 (328)
T d1rjda_ 86 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLI 163 (328)
T ss_dssp HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEE
T ss_pred HHHHHHHHHCCCcEEEEeCCccchHHHHhhccC-CCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccC
Confidence 334444444566789999999988877776653 4445666665 445544443322110 00
Q ss_pred cCCCeeEEeCCCCCcC---------CCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCC---CCCch
Q 027517 86 CYKNIEWVEGDALDLP---------FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNK---STQPF 151 (222)
Q Consensus 86 ~~~~i~~~~~d~~~~~---------~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~---~~~~~ 151 (222)
..++...+..|+.+.. +.....-++++=+++.+++. ..++++.+.+..+ +|.+++-++.. +..++
T Consensus 164 ~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~p~D~F 242 (328)
T d1rjda_ 164 DQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQPNDRF 242 (328)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCSTTCCH
T ss_pred CCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCCCCChH
Confidence 1246788888887641 22334568888889998853 5677887777775 56666767663 33444
Q ss_pred hhHHHH
Q 027517 152 TTAIQE 157 (222)
Q Consensus 152 ~~~~~~ 157 (222)
...+..
T Consensus 243 G~~M~~ 248 (328)
T d1rjda_ 243 GAIMQS 248 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.97 E-value=0.0034 Score=41.65 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=62.3
Q ss_pred HHhhCCCCCCeEEEecC-CC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 27 VSWSGAKTGDNVLDVCC-GS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
+...+..|+++||-.|+ |. |.....+++.. +.++++++.+++..+.+++.-. ...+...+........
T Consensus 20 l~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~lGa--------~~~i~~~~~~~~~~~~ 89 (171)
T d1iz0a2 20 LKRAQARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLALGA--------EEAATYAEVPERAKAW 89 (171)
T ss_dssp HHHTTCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHHTTC--------SEEEEGGGHHHHHHHT
T ss_pred HHHhCCCCCCEEEEEeccccchhhhhhhhccc--cccccccccccccccccccccc--------ceeeehhhhhhhhhcc
Confidence 34456789999999885 43 67777888875 6689999998887777775421 1111111111100123
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+.+|+|+-... + .+....+.++|+|+++..-
T Consensus 90 ~g~D~v~d~~G----~----~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 90 GGLDLVLEVRG----K----EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp TSEEEEEECSC----T----THHHHHTTEEEEEEEEEC-
T ss_pred ccccccccccc----h----hHHHHHHHHhcCCcEEEEe
Confidence 45999886322 1 2456778999999988753
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.87 E-value=0.1 Score=34.11 Aligned_cols=105 Identities=14% Similarity=0.127 Sum_probs=64.5
Q ss_pred HHHhhCCCCCCeEEEecCCCCh-hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCc---
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDL--- 100 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~--- 100 (222)
+.+....+|+++||=+|+|.+. ....+++.. ...+|+++|.+++-.+.+++.- ....+. .+..+.
T Consensus 20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~-g~~~Vi~~~~~~~k~~~a~~~G---------a~~~i~~~~~~~~~~~ 89 (176)
T d2jhfa2 20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVG---------ATECVNPQDYKKPIQE 89 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHH
T ss_pred HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHc-CCceEEeecCcHHHHHHHHHhC---------CeeEEecCCchhHHHH
Confidence 3455678899999999998654 445556654 3458999999999999888763 222222 121111
Q ss_pred ---CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecCC
Q 027517 101 ---PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFNK 146 (222)
Q Consensus 101 ---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~~ 146 (222)
....+.+|+|+-.... ...++.....++++ |.+++.....
T Consensus 90 ~~~~~~~~G~D~vid~~G~------~~~~~~a~~~~~~~~g~~~~~~~~~ 133 (176)
T d2jhfa2 90 VLTEMSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIVGVPP 133 (176)
T ss_dssp HHHHHTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEECSCCC
T ss_pred HHHHHhcCCCCEEEecCCc------hhHHHHHHHHHhcCCcceEEecCCC
Confidence 0123468998865432 34455566677776 5555544433
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.69 E-value=0.074 Score=33.09 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=55.0
Q ss_pred eEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeEEE
Q 027517 37 NVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAIT 111 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~ 111 (222)
+|+=+|+ |.....+++.+. .+.+|+.+|.+++.++.+.+.. .+.++.+|..+.. ..-+..|.++
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~---------~~~vi~Gd~~~~~~l~~~~i~~a~~vv 70 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---------DALVINGDCTKIKTLEDAGIEDADMYI 70 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---------SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh---------hhhhccCcccchhhhhhcChhhhhhhc
Confidence 5677776 556655555442 3568999999999888776542 5678889988742 2234578888
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
+... -++.........+.+.+...+
T Consensus 71 ~~t~---~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 71 AVTG---KEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp ECCS---CHHHHHHHHHHHHHTTCCCEE
T ss_pred ccCC---cHHHHHHHHHHHHHcCCceEE
Confidence 7432 122233344455556666443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.23 E-value=0.056 Score=35.71 Aligned_cols=104 Identities=12% Similarity=0.051 Sum_probs=66.1
Q ss_pred HhhCCCCCCeEEEecCCC--ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-CCC
Q 027517 28 SWSGAKTGDNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PFS 103 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~ 103 (222)
+.-..+++.+||--|++. |..+..+++.. +.++++.--+++-.+.+++.-.. .+.-...+..+ . ...
T Consensus 25 ~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~lGa~-------~vi~~~~~~~~~~~~~~ 95 (176)
T d1xa0a2 25 EHGLTPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVLGAK-------EVLAREDVMAERIRPLD 95 (176)
T ss_dssp HTTCCGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHTTCS-------EEEECC---------CC
T ss_pred HhCCCCCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHhcccc-------eeeecchhHHHHHHHhh
Confidence 334556688999998655 56677888875 77999999988888888765321 11111111111 1 123
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
.+.+|+|+=+-.- ..+....+.|+|||+++..-....
T Consensus 96 ~~gvD~vid~vgg-------~~~~~~l~~l~~~Griv~~G~~~g 132 (176)
T d1xa0a2 96 KQRWAAAVDPVGG-------RTLATVLSRMRYGGAVAVSGLTGG 132 (176)
T ss_dssp SCCEEEEEECSTT-------TTHHHHHHTEEEEEEEEECSCCSS
T ss_pred ccCcCEEEEcCCc-------hhHHHHHHHhCCCceEEEeecccC
Confidence 4579988864432 236678889999999988765543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.20 E-value=0.062 Score=38.80 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=52.7
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEEEc
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITMG 113 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 113 (222)
.+|||+-||-|.+..-+... +.+ +.++|+++.+.+.-+.+. .-.+...|+.++... -...|+++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a---G~~~~~a~e~d~~a~~~~~~N~---------~~~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA---GFRIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH---TCEEEEEEECCHHHHHHHHHHC---------CSEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred CeEEEeCcCcCHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHHC---------CCCCccCChhhCCHhHcccccEEeec
Confidence 37999999999999887765 344 669999998888776664 235677888886422 2458999977
Q ss_pred ccccCc
Q 027517 114 YGLRNV 119 (222)
Q Consensus 114 ~~l~~~ 119 (222)
.....+
T Consensus 69 ~PCq~f 74 (324)
T d1dcta_ 69 PPCQSW 74 (324)
T ss_dssp CCCTTT
T ss_pred cccccc
Confidence 665544
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=95.08 E-value=0.023 Score=39.78 Aligned_cols=110 Identities=18% Similarity=0.111 Sum_probs=69.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHh---CC------------------------------------CCcEEEEeCChhH
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQV---GS------------------------------------QGKVIGLDFSKNQ 71 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~---~~------------------------------------~~~~~~~D~~~~~ 71 (222)
...++..++|-.||+|.+....+-.. .| ...++|.|+++.+
T Consensus 47 ~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~a 126 (249)
T d1o9ga_ 47 PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEA 126 (249)
T ss_dssp SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHH
Confidence 44556689999999999986554321 00 1246688888888
Q ss_pred HHHHh---cchhhhhhhcCCCeeEEeCCCCCcC-----CCCCceeEEEEcccccCcc---------cHHHHHHHHhcccC
Q 027517 72 LSMAS---SRQDLVSKACYKNIEWVEGDALDLP-----FSDCFFDAITMGYGLRNVV---------DKRKALEESFRVLK 134 (222)
Q Consensus 72 ~~~~~---~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~---------~~~~~l~~~~~~l~ 134 (222)
++.++ +++...+.. ..+.+.+.|+.+.. .+....++|++|-....-- ....+...+.+.++
T Consensus 127 i~~A~~~r~n~~~Agl~--~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p 204 (249)
T d1o9ga_ 127 AQAARRLRERLTAEGGA--LPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP 204 (249)
T ss_dssp HHHHHHHHHHHHHTTSS--CCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCCC--ceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCC
Confidence 88874 344333332 56888889886632 1234579999988765431 13556666777786
Q ss_pred CCcEEEEE
Q 027517 135 PGSRISVL 142 (222)
Q Consensus 135 ~gG~l~i~ 142 (222)
....++++
T Consensus 205 ~~s~~~it 212 (249)
T d1o9ga_ 205 AHAVIAVT 212 (249)
T ss_dssp TTCEEEEE
T ss_pred CCcEEEEe
Confidence 55555554
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.018 Score=42.28 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=52.3
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---CCCceeEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---SDCFFDAI 110 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v 110 (222)
..+|+|+-||.|.++.-+... +-..+ +.++|+++.+.+.-+.+. +...++..|+.++.. +...+|++
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dll 72 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMI 72 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEE
T ss_pred CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC--------CCCCcccCchhhCCHhHcCCCCccEE
Confidence 358999999999998877654 32223 678999999888777664 456777888877542 22358999
Q ss_pred EEcccccCc
Q 027517 111 TMGYGLRNV 119 (222)
Q Consensus 111 ~~~~~l~~~ 119 (222)
+.......+
T Consensus 73 ~ggpPCq~f 81 (343)
T d1g55a_ 73 LMSPPCQPF 81 (343)
T ss_dssp EECCC----
T ss_pred Eeecccccc
Confidence 987766555
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.55 E-value=0.52 Score=33.86 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=52.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~ 111 (222)
.+.+|||+-||-|.++.-+.+. +.+ +.++|+++.+.+.-+.+.. .. ...|+.++... -..+|+++
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a---G~~~v~a~e~d~~a~~~~~~N~~--------~~--~~~Di~~~~~~~~~~~Dll~ 76 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC---GAECVYSNEWDKYAQEVYEMNFG--------EK--PEGDITQVNEKTIPDHDILC 76 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT---TCEEEEEECCCHHHHHHHHHHHS--------CC--CBSCGGGSCGGGSCCCSEEE
T ss_pred CCCeEEEECccccHHHHHHHHC---CCeEEEEEeCCHHHHHHHHHHCC--------CC--CcCchhcCchhhcceeeeee
Confidence 4679999999999999887654 344 5679999999888776652 21 24677765422 24589999
Q ss_pred EcccccCc
Q 027517 112 MGYGLRNV 119 (222)
Q Consensus 112 ~~~~l~~~ 119 (222)
.......+
T Consensus 77 ggpPCq~f 84 (327)
T d2c7pa1 77 AGFPCQAF 84 (327)
T ss_dssp EECCCTTT
T ss_pred cccccchh
Confidence 76665544
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=94.24 E-value=0.044 Score=41.19 Aligned_cols=50 Identities=10% Similarity=0.017 Sum_probs=40.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCC-CCcEEEEeCChhHHHHHhcchhh
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
..++..++|+||-.|..+..+++.... ..+|+++|+++...+..+++...
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~ 260 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 260 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 456779999999999999888776533 35899999999999888876543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.04 E-value=0.18 Score=31.11 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=55.9
Q ss_pred CCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeEEEEcccccC
Q 027517 43 CGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAITMGYGLRN 118 (222)
Q Consensus 43 ~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~~~~l~~ 118 (222)
||.|..+..+++.+ .+..+..+|.+++..+..+. ..+.++.+|..+.. ..-++.+.+++...
T Consensus 6 ~G~g~~g~~l~~~L-~~~~i~vi~~d~~~~~~~~~----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~--- 71 (129)
T d2fy8a1 6 CGWSESTLECLREL-RGSEVFVLAEDENVRKKVLR----------SGANFVHGDPTRVSDLEKANVRGARAVIVNLE--- 71 (129)
T ss_dssp ESCCHHHHHHHHTS-CGGGEEEEESCTTHHHHHHH----------TTCEEEESCTTSHHHHHHTTCTTCSEEEECCS---
T ss_pred ECCCHHHHHHHHHH-cCCCCEEEEcchHHHHHHHh----------cCccccccccCCHHHHHHhhhhcCcEEEEecc---
Confidence 45677888888887 45589999999998776643 36788999987732 22245677776331
Q ss_pred cccHHHHHHHHhcccCCCcEEEEE
Q 027517 119 VVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 119 ~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
-+.....+....+.+.|...++..
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~iia~ 95 (129)
T d2fy8a1 72 SDSETIHCILGIRKIDESVRIIAE 95 (129)
T ss_dssp SHHHHHHHHHHHHHHCSSSCEEEE
T ss_pred chhhhHHHHHHHHHHCCCceEEEE
Confidence 122233344455567787776554
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.94 E-value=0.48 Score=31.15 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=60.7
Q ss_pred HHhhCCCCC--CeEEEec--CCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-
Q 027517 27 VSWSGAKTG--DNVLDVC--CGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP- 101 (222)
Q Consensus 27 ~~~~~~~~~--~~vLdiG--~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~- 101 (222)
.+..+.+++ ..||-.| .|-|..+..+++.++. ..++++..+++......... ..-.++...-.++.
T Consensus 21 ~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga-~~vi~~~~~~e~~~~l~~~~--------gad~vi~~~~~~~~~ 91 (187)
T d1vj1a2 21 QEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGC-SRVVGICGTQEKCLFLTSEL--------GFDAAVNYKTGNVAE 91 (187)
T ss_dssp HHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTC-SEEEEEESSHHHHHHHHHHS--------CCSEEEETTSSCHHH
T ss_pred HHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCC-cceecccchHHHHhhhhhcc--------cceEEeeccchhHHH
Confidence 344455555 6799877 3458999999998632 25777776665544433322 12233333222211
Q ss_pred ----CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 102 ----FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 102 ----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
..++.+|+|+=.-. ...+....+.|+++|+++..
T Consensus 92 ~~~~~~~~GvDvv~D~vG-------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 92 QLREACPGGVDVYFDNVG-------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHhccCceEEEecCC-------chhHHHHhhhccccccEEEe
Confidence 12345999985432 34678899999999999875
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.27 Score=34.35 Aligned_cols=82 Identities=11% Similarity=-0.005 Sum_probs=53.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 102 (222)
+++.+|--|++.|- ...+++.+ ..+.+|+..+.+++.++...+.+...... .++..++.|+.+.. .
T Consensus 9 k~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~--~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 9 RDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYP--GTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCS--SEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--ceEEEEEccCCCHHHHHHHHHHHHH
Confidence 46688888877653 32232222 34679999999998888877666543321 36788899998732 0
Q ss_pred CCCceeEEEEcccccC
Q 027517 103 SDCFFDAITMGYGLRN 118 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~ 118 (222)
..+..|+++.+....+
T Consensus 86 ~~g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 86 QHSGVDICINNAGLAR 101 (257)
T ss_dssp HHCCCSEEEECCCCCC
T ss_pred hcCCCCEEEecccccC
Confidence 1246899987665443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=93.43 E-value=0.32 Score=29.97 Aligned_cols=90 Identities=12% Similarity=0.054 Sum_probs=50.4
Q ss_pred eEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC----CCCceeEEE
Q 027517 37 NVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF----SDCFFDAIT 111 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~v~ 111 (222)
+++=+|+ |.....+++.+. .+.+|+.+|.+++.++.++.. ....+.+|..+... .-...|.++
T Consensus 2 ~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~----------~~~~~~gd~~~~~~l~~a~i~~a~~vi 69 (134)
T d2hmva1 2 QFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY----------ATHAVIANATEENELLSLGIRNFEYVI 69 (134)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT----------CSEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh----------CCcceeeecccchhhhccCCccccEEE
Confidence 3555665 455555554432 356899999999998887654 34566788876431 123577776
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
+...= .+....+..+.+.+.+...++.
T Consensus 70 ~~~~~---~~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 70 VAIGA---NIQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp ECCCS---CHHHHHHHHHHHHHTTCSEEEE
T ss_pred EEcCc---hHHhHHHHHHHHHHcCCCcEEe
Confidence 63321 1122233333333445556544
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.15 E-value=0.25 Score=32.07 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=63.0
Q ss_pred CCCCCeEEEecCCC--ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC-CC-c-CCCCCc
Q 027517 32 AKTGDNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LD-L-PFSDCF 106 (222)
Q Consensus 32 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~-~-~~~~~~ 106 (222)
.+++..||--|++. |.....+++.+ +++|+++.-+++..+.+++.-. ..+ +...|. .+ . ....+.
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k~~~~~~lGa-------d~v-i~~~~~~~~~~~~~~~~g 90 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQLGA-------SEV-ISREDVYDGTLKALSKQQ 90 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHHHTC-------SEE-EEHHHHCSSCCCSSCCCC
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHHHHHHHhhcc-------cce-EeccchhchhhhcccCCC
Confidence 34455688777533 67788889886 6799999998888877766531 111 111111 11 1 123456
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
+|+|+-+-. ...+....+.|+|+|+++..-...
T Consensus 91 vd~vid~vg-------g~~~~~~~~~l~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 91 WQGAVDPVG-------GKQLASLLSKIQYGGSVAVSGLTG 123 (167)
T ss_dssp EEEEEESCC-------THHHHHHHTTEEEEEEEEECCCSS
T ss_pred ceEEEecCc-------HHHHHHHHHHhccCceEEEeeccC
Confidence 898875432 346788999999999998765544
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=93.11 E-value=0.24 Score=32.75 Aligned_cols=104 Identities=9% Similarity=0.006 Sum_probs=57.5
Q ss_pred HHHhhCCCCCCeEEEecCCC---ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC---CCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGS---GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG---DALD 99 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~---G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~~ 99 (222)
+....+..|+.+||=+.+|+ |.....+++.. +.+++++--+++..+...+.+...+ .-.++.. +..+
T Consensus 20 l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lG-----ad~vi~~~~~~~~~ 92 (189)
T d1gu7a2 20 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELG-----ATQVITEDQNNSRE 92 (189)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHT-----CSEEEEHHHHHCGG
T ss_pred HHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhcc-----ccEEEeccccchhH
Confidence 33455678888888773333 56677888886 5688776444444333333322222 1122222 2111
Q ss_pred cC--------CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 100 LP--------FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 100 ~~--------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.. ...+.+|+|+-+- . ...+....+.|+|+|+++..-
T Consensus 93 ~~~~v~~~~~~~g~~vdvv~D~v-----g--~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 93 FGPTIKEWIKQSGGEAKLALNCV-----G--GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp GHHHHHHHHHHHTCCEEEEEESS-----C--HHHHHHHHHTSCTTCEEEECC
T ss_pred HHHHHHHHHhhccCCceEEEECC-----C--cchhhhhhhhhcCCcEEEEEC
Confidence 10 0124588888432 1 334567788999999998754
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.35 Score=33.99 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=69.5
Q ss_pred CCeEEEecCCCChhHHHHHHHhC--CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------C
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 102 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 102 (222)
+++|.=|-.|++.+...+++.+- .+..|+..+.+++.++.+.+.+...+ .++.++..|+.+.. .
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dvs~~~sv~~~~~~~~~ 77 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG----LSPRFHQLDIDDLQSIRALRDFLRK 77 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEEecCCHHHHHHHHHHHHH
Confidence 56775554455555555544331 25689999999998888877765433 57889999998742 1
Q ss_pred CCCceeEEEEcccccCcc---c----------------HHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVV---D----------------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~---~----------------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..+..|+++.+..+.... + ...+.+.+...|+++|+++.+.
T Consensus 78 ~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 78 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 124699999887754331 1 1245677788888899877653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=91.88 E-value=0.97 Score=29.16 Aligned_cols=98 Identities=11% Similarity=0.099 Sum_probs=54.9
Q ss_pred CeEEEecCCCChh-HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC---CcCCCCCceeEEE
Q 027517 36 DNVLDVCCGSGDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL---DLPFSDCFFDAIT 111 (222)
Q Consensus 36 ~~vLdiG~G~G~~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~---~~~~~~~~~D~v~ 111 (222)
++|--+|+|.... ....+.. .+.+|+.+|.+++.++..++.-...... +.......... +....-+..|+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~e~~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDAQRIKEIQDRGAIIAEG--PGLAGTAHPDLLTSDIGLAVKDADVIL 77 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHTSEEEES--SSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHcCCCchhh--hhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence 5788899987433 3333333 3679999999998887766542110000 11111111110 1100013478888
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
..-. -.....+++++...++++-.++
T Consensus 78 i~v~---~~~~~~~~~~i~~~l~~~~~iv 103 (184)
T d1bg6a2 78 IVVP---AIHHASIAANIASYISEGQLII 103 (184)
T ss_dssp ECSC---GGGHHHHHHHHGGGCCTTCEEE
T ss_pred EEEc---hhHHHHHHHHhhhccCCCCEEE
Confidence 7432 2345788999999999887654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.20 E-value=0.31 Score=34.07 Aligned_cols=53 Identities=23% Similarity=0.214 Sum_probs=37.9
Q ss_pred eEEeCCCCCc--CCCCCceeEEEEcccccC-----------cccHHHHHHHHhcccCCCcEEEEEe
Q 027517 91 EWVEGDALDL--PFSDCFFDAITMGYGLRN-----------VVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 91 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~-----------~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.++++|..+. .++++++|+|++.-...- .......+.++.++|+|+|.+++..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 4566777663 356788999998665431 1124677899999999999998754
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=90.99 E-value=0.79 Score=29.29 Aligned_cols=110 Identities=17% Similarity=0.100 Sum_probs=54.3
Q ss_pred HHHhhCCCCCCeEEEecCCC-ChhHH-HHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGS-GDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~-G~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
+.+.+..-.+.+||=+|+|. |.... .|... + ..+++.+.-+.+-.+...+.+ +... .++.++...
T Consensus 15 a~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~-g-~~~i~v~nRt~~ka~~l~~~~---------~~~~--~~~~~~~~~ 81 (159)
T d1gpja2 15 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDR-G-VRAVLVANRTYERAVELARDL---------GGEA--VRFDELVDH 81 (159)
T ss_dssp HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHH-C-CSEEEEECSSHHHHHHHHHHH---------TCEE--CCGGGHHHH
T ss_pred HHHHhCCcccCeEEEECCCHHHHHHHHHHHhc-C-CcEEEEEcCcHHHHHHHHHhh---------hccc--ccchhHHHH
Confidence 33444445678999999864 33332 33332 2 226888877643332222221 2222 223333211
Q ss_pred CCceeEEEEcccccC-cccHHHHHHHHhcccCCCcEEEEEecCCCCC
Q 027517 104 DCFFDAITMGYGLRN-VVDKRKALEESFRVLKPGSRISVLDFNKSTQ 149 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~-~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~ 149 (222)
-..+|+|++.-.-.+ +-+ ...++...+.-+.+.-+++.|..-|..
T Consensus 82 l~~~Divi~atss~~~ii~-~~~i~~~~~~r~~~~~~~iiDlavPr~ 127 (159)
T d1gpja2 82 LARSDVVVSATAAPHPVIH-VDDVREALRKRDRRSPILIIDIANPRD 127 (159)
T ss_dssp HHTCSEEEECCSSSSCCBC-HHHHHHHHHHCSSCCCEEEEECCSSCS
T ss_pred hccCCEEEEecCCCCcccc-HhhhHHHHHhcccCCCeEEEeecCCCC
Confidence 136999997655332 222 233333333323445567888776543
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.68 E-value=1.2 Score=28.00 Aligned_cols=105 Identities=14% Similarity=0.071 Sum_probs=54.9
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..+.+|--+|+|. |....+.+...+...++..+|+.++..+--..-+..........+.+...|..++. ..|+|+
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~----daDvvv 79 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCR----DADLVV 79 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTT----TCSEEE
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhc----cceeEE
Confidence 3566899999875 54444444332334489999998876332111111111111134555566655542 358888
Q ss_pred EcccccCccc-------------HHHHHHHHhcccCCCcEEEEE
Q 027517 112 MGYGLRNVVD-------------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 112 ~~~~l~~~~~-------------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.......-+. ...+.+.+.+. .|+++++++
T Consensus 80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivv 122 (148)
T d1ldna1 80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVA 122 (148)
T ss_dssp ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEEC
T ss_pred EecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEe
Confidence 7555433221 12334444443 578877664
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.23 E-value=0.49 Score=32.84 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=54.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 102 (222)
.++.+|=-|++.| ....+++.+ ..+.+|..+|.+++.++.....+...... .++.++..|+.+.. .
T Consensus 2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (254)
T d2gdza1 2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEP--QKTLFIQCDVADQQQLRDTFRKVVD 78 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCG--GGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCC--CcEEEEEeecCCHHHHHHHHHHHHH
Confidence 3667777786654 333333322 24679999999998887776655332111 36788899998732 0
Q ss_pred CCCceeEEEEcccccCccc
Q 027517 103 SDCFFDAITMGYGLRNVVD 121 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~ 121 (222)
.-++.|+++.+.......+
T Consensus 79 ~~G~iDilVnnAg~~~~~~ 97 (254)
T d2gdza1 79 HFGRLDILVNNAGVNNEKN 97 (254)
T ss_dssp HHSCCCEEEECCCCCCSSS
T ss_pred HcCCcCeeccccccccccc
Confidence 1146899998877766544
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=90.00 E-value=0.24 Score=34.18 Aligned_cols=52 Identities=4% Similarity=0.052 Sum_probs=36.2
Q ss_pred eEEeCCCCCc--CCCCCceeEEEEcccccCc-------cc-------HHHHHHHHhcccCCCcEEEEE
Q 027517 91 EWVEGDALDL--PFSDCFFDAITMGYGLRNV-------VD-------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 91 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~-------~~-------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.++++|..+. .++++++|+|++.-....- .+ ....+++++++|+|||.+++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 4677887663 3567789999986654211 11 346788999999999988754
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=1.6 Score=28.30 Aligned_cols=94 Identities=11% Similarity=0.120 Sum_probs=59.8
Q ss_pred CCCeEEEecCC--CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeE
Q 027517 34 TGDNVLDVCCG--SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDA 109 (222)
Q Consensus 34 ~~~~vLdiG~G--~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~ 109 (222)
++..||-.|+. -|..+..+++.+ +.+++++.-+++..+.+++.- .-.++..+-.+. ......+|.
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~lG---------ad~vi~~~~~~~~~~l~~~~~~~ 99 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKSLG---------ASRVLPRDEFAESRPLEKQVWAG 99 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHHT---------EEEEEEGGGSSSCCSSCCCCEEE
T ss_pred CCCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHhhc---------cccccccccHHHHHHHHhhcCCe
Confidence 34477766643 367778888885 679999999998888776542 122232221111 223455787
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|+= . +- ...+....+.|+++|+++..-..
T Consensus 100 vvD-~----Vg--g~~~~~~l~~l~~~Griv~~G~~ 128 (177)
T d1o89a2 100 AID-T----VG--DKVLAKVLAQMNYGGCVAACGLA 128 (177)
T ss_dssp EEE-S----SC--HHHHHHHHHTEEEEEEEEECCCT
T ss_pred eEE-E----cc--hHHHHHHHHHhccccceEeeccc
Confidence 752 1 21 34678899999999999886443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.76 E-value=0.64 Score=32.29 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=63.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEE-eCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGL-DFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---------- 101 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~-D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------- 101 (222)
.++.+|--|++ +.....+++.+ ..+.+|+.. +-+++.++...+.+...+ .++..+..|+.+..
T Consensus 5 ~GK~alITGas-~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g----~~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 5 AGKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG----AQGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC----CCceEecCCCCCHHHHHHHHHHHH
Confidence 46788877755 44444444333 235677764 566666676666655443 47889999998631
Q ss_pred CCCCceeEEEEcccccCccc-------------------HHHHHHHHhcccCCCcEEEEEe
Q 027517 102 FSDCFFDAITMGYGLRNVVD-------------------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
...+..|+++.+....+..+ .-...+.+...|+.+|..+++.
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 80 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 11246899998776654421 1235666666777777665543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=1.1 Score=30.65 Aligned_cols=77 Identities=18% Similarity=0.115 Sum_probs=50.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC------CCCCc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------FSDCF 106 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~ 106 (222)
.++++|--|++.| ....+++.+ ..+.+|+.+|.+++.++...+.. .++..++.|+.+.. ..-++
T Consensus 6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~--------~~~~~~~~Dv~d~~~v~~~~~~~g~ 76 (244)
T d1pr9a_ 6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC--------PGIEPVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS--------TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc--------CCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 5778888897765 333333222 23679999999998877665543 46788888987631 12256
Q ss_pred eeEEEEcccccCc
Q 027517 107 FDAITMGYGLRNV 119 (222)
Q Consensus 107 ~D~v~~~~~l~~~ 119 (222)
.|+++.+......
T Consensus 77 iDilVnnAg~~~~ 89 (244)
T d1pr9a_ 77 VDLLVNNAAVALL 89 (244)
T ss_dssp CCEEEECCCCCCC
T ss_pred ceEEEeccccccc
Confidence 8999977665443
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.24 E-value=1.5 Score=30.45 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=62.5
Q ss_pred CCCeEEEecCCCCh---hHHHHHHHhCCCCcEEEEeCC-hhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--------
Q 027517 34 TGDNVLDVCCGSGD---LSFLLSEQVGSQGKVIGLDFS-KNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-------- 101 (222)
Q Consensus 34 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 101 (222)
.++++|--|++.|- .+..|++ .+.+|+..|.+ ++.++...+.+...+ .++.+++.|+.+..
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~---~Ga~Vvi~~~~~~~~~~~~~~~~~~~g----~~~~~~~~D~~~~~~v~~~~~~ 89 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGR---RGCKVIVNYANSTESAEEVVAAIKKNG----SDAACVKANVGVVEDIVRMFEE 89 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHH---TTCEEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH---cCCEEEEEeCCchHHHHHHHHHHHhhC----CceeeEeCCCCCHHHHHHHHHH
Confidence 46788888876652 3344443 36789999876 445555444443332 57888889988731
Q ss_pred --CCCCceeEEEEcccccCccc-------------------HHHHHHHHhcccCCCcEEEEEe
Q 027517 102 --FSDCFFDAITMGYGLRNVVD-------------------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 --~~~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
...+..|+++.+........ .-.+.+.+.+.|+.+|..+++.
T Consensus 90 ~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 90 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred HHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 01145798887665443321 1234666777778777766653
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.17 E-value=0.73 Score=31.76 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=54.2
Q ss_pred CCCeEEEecCCCC---hhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---------
Q 027517 34 TGDNVLDVCCGSG---DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------- 101 (222)
Q Consensus 34 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------- 101 (222)
.|+.+|--|++.| ..+..+++ .+.+|+..|.+++.++...+.....+ .++..+..|+.+..
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~---~G~~V~l~~r~~~~l~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAK---LKSKLVLWDINKHGLEETAAKCKGLG----AKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHHHHHHH
Confidence 4667777787665 23344443 46799999999998888777765433 57889999998742
Q ss_pred -CCCCceeEEEEcccccCc
Q 027517 102 -FSDCFFDAITMGYGLRNV 119 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~ 119 (222)
...+..|+++.+......
T Consensus 79 ~~~~g~idilinnag~~~~ 97 (244)
T d1yb1a_ 79 KAEIGDVSILVNNAGVVYT 97 (244)
T ss_dssp HHHTCCCSEEEECCCCCCC
T ss_pred HHHcCCCceeEeecccccc
Confidence 123468999987776544
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=88.59 E-value=0.73 Score=30.27 Aligned_cols=101 Identities=10% Similarity=-0.024 Sum_probs=60.8
Q ss_pred CCeEEEecCCCChhHHH-HHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhc--------------CCCeeEEeCCCCC
Q 027517 35 GDNVLDVCCGSGDLSFL-LSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC--------------YKNIEWVEGDALD 99 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~-l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~~~d~~~ 99 (222)
-.+|-=||+|+-+.... +... .+.+|+.+|.+++.++.+.++....-... ..++.. ..+..+
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~ 80 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSAS--KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGD 80 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTT
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-cccccc
Confidence 35788899987433332 2222 46799999999999888776643211000 011221 222222
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+ ...|+|+= .+.+.++-...+++++-+.++|+-.+.-..
T Consensus 81 ~----~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~IiaSnT 119 (186)
T d1wdka3 81 F----GNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILASNT 119 (186)
T ss_dssp G----GGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred c----cccceeee-eecchHHHHHHHHHHHHhhcCCCeeEEecc
Confidence 2 24577774 445555556789999999999987775543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=88.05 E-value=2.2 Score=29.28 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=50.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 102 (222)
.++.+|--|++.| ....+++.+ ..+++|..+|.+++.++...+.+..... .++..+..|+.+.. .
T Consensus 4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG---VETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4678888887665 333332222 2367999999998887766555432211 47888899998731 0
Q ss_pred CCCceeEEEEccccc
Q 027517 103 SDCFFDAITMGYGLR 117 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~ 117 (222)
.-++.|+++.+....
T Consensus 80 ~~g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGIN 94 (251)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 114689999776544
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=87.47 E-value=0.15 Score=32.78 Aligned_cols=95 Identities=13% Similarity=0.025 Sum_probs=51.6
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 36 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 36 ~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
++|+-+|+|. |......+.+ .+.+|+.++.+++..+..... .............+. +...+.+|+|+..-
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~--~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~D~iii~v 71 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCK--QGHEVQGWLRVPQPYCSVNLV----ETDGSIFNESLTAND---PDFLATSDLLLVTL 71 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCCSEEEEEEE----CTTSCEEEEEEEESC---HHHHHTCSEEEECS
T ss_pred CEEEEECcCHHHHHHHHHHHH--CCCceEEEEcCHHHhhhhccc----cCCccccccccccch---hhhhcccceEEEee
Confidence 4788999987 5554433333 356899999877522211111 000000001111111 11124589999755
Q ss_pred cccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 115 GLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
-- .+...+++.+...+.++..++..
T Consensus 72 ka---~~~~~~~~~l~~~~~~~~~Iv~~ 96 (167)
T d1ks9a2 72 KA---WQVSDAVKSLASTLPVTTPILLI 96 (167)
T ss_dssp CG---GGHHHHHHHHHTTSCTTSCEEEE
T ss_pred cc---cchHHHHHhhccccCcccEEeec
Confidence 33 24577888899999988877654
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=87.26 E-value=1.8 Score=29.63 Aligned_cols=78 Identities=19% Similarity=0.118 Sum_probs=48.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 102 (222)
+++.+|--|++.| ....+++.+ ..+.+|+..|.+++.++...+.+. .+...+..|+.+.. .
T Consensus 3 ~gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~~ 74 (243)
T d1q7ba_ 3 EGKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYLG-------ANGKGLMLNVTDPASIESVLEKIRA 74 (243)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-------CCCcEEEEEecCHHHhhhhhhhhhc
Confidence 3567777776654 333333322 246799999999988877665542 35677888987631 1
Q ss_pred CCCceeEEEEcccccCc
Q 027517 103 SDCFFDAITMGYGLRNV 119 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~ 119 (222)
.-++.|+++.+......
T Consensus 75 ~~g~iDilVnnAg~~~~ 91 (243)
T d1q7ba_ 75 EFGEVDILVNNAGITRD 91 (243)
T ss_dssp HTCSCSEEEECCCCCCC
T ss_pred ccCCcceehhhhhhccc
Confidence 12468999976654433
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=86.97 E-value=1.3 Score=27.79 Aligned_cols=96 Identities=11% Similarity=-0.062 Sum_probs=53.6
Q ss_pred CeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeEE
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 110 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v 110 (222)
.+|+=+|+| ..+..+++.+. .+.+++.+|.+++......+.... ..+.++.+|..+.. ..-++.|.|
T Consensus 4 nHiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~------~~~~vi~Gd~~d~~~L~~a~i~~a~~v 75 (153)
T d1id1a_ 4 DHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG------DNADVIPGDSNDSSVLKKAGIDRCRAI 75 (153)
T ss_dssp SCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC------TTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred CEEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc------CCcEEEEccCcchHHHHHhccccCCEE
Confidence 367777775 45555554432 356899999988654332222110 46889999988742 122457888
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
++... -+.....+....+-+.|...++..
T Consensus 76 i~~~~---~d~~n~~~~~~~r~~~~~~~iia~ 104 (153)
T d1id1a_ 76 LALSD---NDADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp EECSS---CHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred EEccc---cHHHHHHHHHHHHHhCCCCceEEE
Confidence 87432 112223333444555676666543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=86.91 E-value=2.8 Score=28.50 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=65.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 102 (222)
.++++|-.|++.| ....+++.+ ..+.+|+..+.+.+.++...+.+. .++.+++.|+.+.. .
T Consensus 4 ~gK~alItGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~Dls~~~~i~~~~~~i~~ 75 (241)
T d2a4ka1 4 SGKTILVTGAASG-IGRAALDLFAREGASLVAVDREERLLAEAVAALE-------AEAIAVVADVSDPKAVEAVFAEALE 75 (241)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC-------SSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-------CceEEEEecCCCHHHHHHHHHHHHH
Confidence 4678888887654 333333332 346799999999987766655442 46788889987632 0
Q ss_pred CCCceeEEEEcccccCccc-------------------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 103 SDCFFDAITMGYGLRNVVD-------------------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.-++.|+++.+....+... .-.+.+.+...++.++.+.+.....
T Consensus 76 ~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a 138 (241)
T d2a4ka1 76 EFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA 138 (241)
T ss_dssp HHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT
T ss_pred HhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccc
Confidence 1146899888766543321 1234556666777777776654443
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.90 E-value=0.64 Score=30.22 Aligned_cols=85 Identities=12% Similarity=-0.025 Sum_probs=42.7
Q ss_pred HhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCC-eeEEeCCCCCcCCCCCc
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKN-IEWVEGDALDLPFSDCF 106 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~ 106 (222)
+....-.+++||=+|+|. .++.++..+....+++.+.-+.+-.+.....+..... .. ...+ +..+.......
T Consensus 11 ~~~~~~~~k~vlIlGaGG--~arai~~aL~~~~~i~I~nR~~~ka~~l~~~~~~~~~---~~~~~~~--~~~~~~~~~~~ 83 (177)
T d1nvta1 11 EEIGRVKDKNIVIYGAGG--AARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLN---KKFGEEV--KFSGLDVDLDG 83 (177)
T ss_dssp HHHCCCCSCEEEEECCSH--HHHHHHHHHTSSSEEEEECSSHHHHHHHHHHHHHHHT---CCHHHHE--EEECTTCCCTT
T ss_pred HhCCCcCCCEEEEECCcH--HHHHHHHHHccccceeeehhhhhHHHHHHHHHHHhhc---hhhhhhh--hhhhhhhccch
Confidence 333345678999999875 3333333333344888888777655544333321110 11 1111 11122222345
Q ss_pred eeEEEEcccccCc
Q 027517 107 FDAITMGYGLRNV 119 (222)
Q Consensus 107 ~D~v~~~~~l~~~ 119 (222)
+|+++..-+....
T Consensus 84 ~dliIn~tp~g~~ 96 (177)
T d1nvta1 84 VDIIINATPIGMY 96 (177)
T ss_dssp CCEEEECSCTTCT
T ss_pred hhhhccCCccccc
Confidence 7888876665543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=86.58 E-value=0.47 Score=33.93 Aligned_cols=77 Identities=19% Similarity=0.158 Sum_probs=46.2
Q ss_pred eEEEecCCCChhHHHHHHHh-CCCCcEEEEe-CChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----CCCCceeE
Q 027517 37 NVLDVCCGSGDLSFLLSEQV-GSQGKVIGLD-FSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FSDCFFDA 109 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~ 109 (222)
+||=.| |+|....++.+.+ ..+.+|+++| ++...-........ ...+++++.+|+.+.. +...++|.
T Consensus 2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~-----~~~~~~~i~~Di~~~~~l~~~~~~~~~d~ 75 (338)
T d1orra_ 2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS-----SLGNFEFVHGDIRNKNDVTRLITKYMPDS 75 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH-----TTCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh-----ccCCcEEEEcccCCHHHHHHHHHhcCCce
Confidence 677555 7888887776655 3467899998 33322111111111 1158999999998732 12234799
Q ss_pred EEEcccccCc
Q 027517 110 ITMGYGLRNV 119 (222)
Q Consensus 110 v~~~~~l~~~ 119 (222)
|+-.....+.
T Consensus 76 Vih~aa~~~~ 85 (338)
T d1orra_ 76 CFHLAGQVAM 85 (338)
T ss_dssp EEECCCCCCH
T ss_pred EEeecccccc
Confidence 9977665544
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.87 E-value=2.4 Score=28.90 Aligned_cols=75 Identities=20% Similarity=0.096 Sum_probs=48.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC------CCCCc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP------FSDCF 106 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~ 106 (222)
.++++|--|++.| ....+++.+ ..+.+|+.+|.+++.++...+.. .++..++.|+.+.. ..-++
T Consensus 4 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~g~ 74 (242)
T d1cyda_ 4 SGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC--------PGIEPVCVDLGDWDATEKALGGIGP 74 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS--------TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc--------CCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 4678888886655 333333322 24679999999988776655443 46778888987632 11256
Q ss_pred eeEEEEccccc
Q 027517 107 FDAITMGYGLR 117 (222)
Q Consensus 107 ~D~v~~~~~l~ 117 (222)
.|+++.+....
T Consensus 75 iDilVnnAg~~ 85 (242)
T d1cyda_ 75 VDLLVNNAALV 85 (242)
T ss_dssp CSEEEECCCCC
T ss_pred CeEEEECCccc
Confidence 89999776544
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=85.46 E-value=1.5 Score=30.34 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=52.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----------
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------- 101 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------- 101 (222)
.++++|-.|++.| ....+++.+ ..+.+|+.++.+++.++.+.+.....+ .++.++..|+.+..
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~----~~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG----LNVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEeecCCHHHHHHHHHHHHH
Confidence 5778998997655 333333221 246799999999988888776664433 56788889987631
Q ss_pred CCCCceeEEEEcccccC
Q 027517 102 FSDCFFDAITMGYGLRN 118 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~ 118 (222)
...+..|+++.+.....
T Consensus 80 ~~~g~idilinnag~~~ 96 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGVVI 96 (258)
T ss_dssp HTTSCCCEEEECCCCCC
T ss_pred HhCCCcEEEeccccccc
Confidence 11246788887665543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=85.00 E-value=1.6 Score=30.20 Aligned_cols=75 Identities=16% Similarity=0.059 Sum_probs=50.9
Q ss_pred CCCeEEEecCCCCh---hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---------
Q 027517 34 TGDNVLDVCCGSGD---LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------- 101 (222)
Q Consensus 34 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------- 101 (222)
.++.+|--|++.|- .+..|++ .+++|+.+|.+++.++.+.+.+...+ .++..+..|+.+..
T Consensus 4 ~gK~alITGas~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~~~~ 76 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAE---EGTAIALLDMNREALEKAEASVREKG----VEARSYVCDVTSEEAVIGTVDSV 76 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTTT----SCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHH
Confidence 46788888866552 2334443 36799999999998888877665433 47888899987631
Q ss_pred -CCCCceeEEEEccc
Q 027517 102 -FSDCFFDAITMGYG 115 (222)
Q Consensus 102 -~~~~~~D~v~~~~~ 115 (222)
..-+..|+++.+..
T Consensus 77 ~~~~g~iDilVnnaG 91 (260)
T d1zema1 77 VRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCCeehhhhc
Confidence 01146899887654
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=84.92 E-value=0.43 Score=34.50 Aligned_cols=74 Identities=27% Similarity=0.249 Sum_probs=46.0
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCC----hhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----CCCC
Q 027517 36 DNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFS----KNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FSDC 105 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 105 (222)
++||=.| |+|....++++.+ ..+.+|+++|.. ...+...... . ..++.++++|+.+.. +...
T Consensus 1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~----~---~~~~~~~~~Dl~d~~~l~~~~~~~ 72 (338)
T d1udca_ 1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL----G---GKHPTFVEGDIRNEALMTEILHDH 72 (338)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHH----H---TSCCEEEECCTTCHHHHHHHHHHT
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhh----c---CCCCEEEEeecCCHHHHHHHHhcc
Confidence 3677777 7888877776654 345689999842 2222222111 1 158999999998743 2223
Q ss_pred ceeEEEEccccc
Q 027517 106 FFDAITMGYGLR 117 (222)
Q Consensus 106 ~~D~v~~~~~l~ 117 (222)
++|+|+-..+..
T Consensus 73 ~~d~ViHlAa~~ 84 (338)
T d1udca_ 73 AIDTVIHFAGLK 84 (338)
T ss_dssp TCSEEEECCSCC
T ss_pred CCCEEEECCCcc
Confidence 589998665543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.80 E-value=2.2 Score=29.25 Aligned_cols=80 Identities=11% Similarity=0.072 Sum_probs=53.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 102 (222)
.++.+|--|++. .....+++.+ ..+.+|..+|.+++.++...+.+...+ .++..+..|+.+.. .
T Consensus 9 enKvalITGas~-GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g----~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 9 ENKVALVTGAGR-GIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG----YESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp SSCEEEEESTTS-HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 355677777554 4555555544 345699999999998888777665433 47888999998731 1
Q ss_pred CCCceeEEEEcccccC
Q 027517 103 SDCFFDAITMGYGLRN 118 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~ 118 (222)
..+..|+++.+.....
T Consensus 84 ~~g~iDilvnnag~~~ 99 (251)
T d2c07a1 84 EHKNVDILVNNAGITR 99 (251)
T ss_dssp HCSCCCEEEECCCCCC
T ss_pred hcCCceeeeecccccc
Confidence 1256899887665443
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.54 E-value=2 Score=29.66 Aligned_cols=79 Identities=9% Similarity=-0.007 Sum_probs=52.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 102 (222)
.++++|--|++. .....+++.+ ..+++|+..|.+++.++...+.+...+ .++..+..|+.+.. .
T Consensus 10 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g----~~~~~~~~Dvs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 10 DGKCAIITGAGA-GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG----GQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 466777777554 4444444333 346799999999988888777665443 47888999998731 0
Q ss_pred CCCceeEEEEccccc
Q 027517 103 SDCFFDAITMGYGLR 117 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~ 117 (222)
.-++.|+++.+....
T Consensus 85 ~~g~iDilvnnAG~~ 99 (255)
T d1fmca_ 85 KLGKVDILVNNAGGG 99 (255)
T ss_dssp HHSSCCEEEECCCCC
T ss_pred HcCCCCEeeeCCcCC
Confidence 114689998766544
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.32 E-value=3.3 Score=25.94 Aligned_cols=104 Identities=21% Similarity=0.179 Sum_probs=52.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~ 111 (222)
|..+|--+|+|. |....+++.. +.-.++..+|+.++..+....-+.........+..+.. .+..++ ...|+|+
T Consensus 2 p~~KI~IIGaG~VG~~~a~~l~~-~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~----~~advvv 76 (150)
T d1t2da1 2 PKAKIVLVGSGMIGGVMATLIVQ-KNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDL----AGADVVI 76 (150)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGG----TTCSEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHh-CCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccccccc----CCCcEEE
Confidence 456899999875 4444444444 33458999999886543222111111110112334433 333343 2358888
Q ss_pred EcccccCcc----------c----HHHHHHHHhccc---CCCcEEEEE
Q 027517 112 MGYGLRNVV----------D----KRKALEESFRVL---KPGSRISVL 142 (222)
Q Consensus 112 ~~~~l~~~~----------~----~~~~l~~~~~~l---~~gG~l~i~ 142 (222)
........+ + -..+++++.+.+ .|+++++++
T Consensus 77 itag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivv 124 (150)
T d1t2da1 77 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVV 124 (150)
T ss_dssp ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred EecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 766544322 1 123444443333 488887664
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=83.29 E-value=1.5 Score=31.38 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=46.6
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCC-CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeE
Q 027517 36 DNVLDVCCGSGDLSFLLSEQV-GSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~-~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~ 109 (222)
++||=.| |+|....++++.+ ..+ .+|+++|........... .++++++.+|+.+.. .....+|.
T Consensus 1 MKILITG-~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~---------~~~~~~i~~Di~~~~~~~~~~~~~~d~ 70 (342)
T d2blla1 1 MRVLILG-VNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLN---------HPHFHFVEGDISIHSEWIEYHVKKCDV 70 (342)
T ss_dssp CEEEEET-CSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTT---------CTTEEEEECCTTTCSHHHHHHHHHCSE
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhcc---------CCCeEEEECccCChHHHHHHHHhCCCc
Confidence 3677777 5888887777654 223 479999986543322222 168999999987532 11235899
Q ss_pred EEEcccccC
Q 027517 110 ITMGYGLRN 118 (222)
Q Consensus 110 v~~~~~l~~ 118 (222)
|+-......
T Consensus 71 Vih~a~~~~ 79 (342)
T d2blla1 71 VLPLVAIAT 79 (342)
T ss_dssp EEECBCCCC
T ss_pred ccccccccc
Confidence 987666543
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=82.97 E-value=4 Score=25.88 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=27.4
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHH
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQL 72 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~ 72 (222)
+..+|-=+|+|. |....+.+...+-..++..+|..++..
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a 58 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL 58 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence 456899999987 666555555533344899999987654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=82.44 E-value=2.2 Score=24.51 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=38.4
Q ss_pred CCCCeEEEec-CCCChhH--HHHHHHhCCCCcEEEEeCChhHH-HHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCcee
Q 027517 33 KTGDNVLDVC-CGSGDLS--FLLSEQVGSQGKVIGLDFSKNQL-SMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 108 (222)
Q Consensus 33 ~~~~~vLdiG-~G~G~~~--~~l~~~~~~~~~~~~~D~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (222)
...++|.=+| ||+|-.+ ..+.+. +.+|+|.|...... +...+ ..+.+..+..... . ...|
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~---G~~VsGSD~~~~~~~~~L~~----------~Gi~v~~g~~~~~-i--~~~d 69 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNE---GYQISGSDIADGVVTQRLAQ----------AGAKIYIGHAEEH-I--EGAS 69 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHH---TCEEEEEESCCSHHHHHHHH----------TTCEEEESCCGGG-G--TTCS
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhC---CCEEEEEeCCCChhhhHHHH----------CCCeEEECCcccc-C--CCCC
Confidence 3456788887 4556333 344433 67999999864322 22211 2455555444332 1 2468
Q ss_pred EEEEccccc
Q 027517 109 AITMGYGLR 117 (222)
Q Consensus 109 ~v~~~~~l~ 117 (222)
+|+.+..+.
T Consensus 70 ~vV~S~AI~ 78 (96)
T d1p3da1 70 VVVVSSAIK 78 (96)
T ss_dssp EEEECTTSC
T ss_pred EEEECCCcC
Confidence 888777654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=82.31 E-value=2.1 Score=29.67 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=50.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 102 (222)
.++.+|--|++.| ....+++.+ ..+.+|+.+|.+++.++...+.+... .++.++..|+.+.. .
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP-----DVISFVHCDVTKDEDVRNLVDTTIA 78 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT-----TTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC-----CceEEEEccCCCHHHHHHHHHHHHH
Confidence 4678888887665 333333322 34679999999998887776665332 46788889987631 0
Q ss_pred CCCceeEEEEcccc
Q 027517 103 SDCFFDAITMGYGL 116 (222)
Q Consensus 103 ~~~~~D~v~~~~~l 116 (222)
..++.|+++.+...
T Consensus 79 ~~g~iD~lVnnAG~ 92 (268)
T d2bgka1 79 KHGKLDIMFGNVGV 92 (268)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCcceecccccc
Confidence 11468999976654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=82.17 E-value=1.7 Score=25.68 Aligned_cols=88 Identities=9% Similarity=-0.106 Sum_probs=48.5
Q ss_pred CCCeEEEecCCCChhH-HHHHHHhCCCCcEEEEeCCh--hHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 34 TGDNVLDVCCGSGDLS-FLLSEQVGSQGKVIGLDFSK--NQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~-~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
.+++||=+|+|.=... ...+.. .+++++.++... +....+.+ .++.+......+..+ ..+++|
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~dl--~~~~lv 76 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLE--AGARLTVNALTFIPQFTVWANE----------GMLTLVEGPFDETLL--DSCWLA 76 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESSCCHHHHHHHTT----------TSCEEEESSCCGGGG--TTCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCChHHHHHHhc----------CCceeeccCCCHHHh--CCCcEE
Confidence 4679999998873322 222222 356777776533 33333221 367777766655333 246777
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
+....- ...-+++.+..++-|.++-
T Consensus 77 ~~at~d------~~~n~~i~~~a~~~~ilVN 101 (113)
T d1pjqa1 77 IAATDD------DTVNQRVSDAAESRRIFCN 101 (113)
T ss_dssp EECCSC------HHHHHHHHHHHHHTTCEEE
T ss_pred eecCCC------HHHHHHHHHHHHHcCCEEE
Confidence 764321 2333455556666777753
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=81.64 E-value=1.5 Score=28.75 Aligned_cols=76 Identities=8% Similarity=-0.044 Sum_probs=47.2
Q ss_pred CCCCeEEEecCCCCh--h-HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---CCCCCc
Q 027517 33 KTGDNVLDVCCGSGD--L-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDCF 106 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~--~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~ 106 (222)
-++++||=.|++.|- . +..+++ .+.+|+.++.+++.++...+...... ++.+...|..+. ...-+.
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~---~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~ 92 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAG---EGAEVVLCGRKLDKAQAAADSVNKRF-----KVNVTAAETADDASRAEAVKG 92 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHH-----TCCCEEEECCSHHHHHHHTTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHh---hccchhhcccchHHHHHHHHHHHhcc-----chhhhhhhcccHHHHHHHhcC
Confidence 367899999966542 2 233333 36799999999988877776654332 444555555442 111245
Q ss_pred eeEEEEcccc
Q 027517 107 FDAITMGYGL 116 (222)
Q Consensus 107 ~D~v~~~~~l 116 (222)
.|+++.+...
T Consensus 93 iDilin~Ag~ 102 (191)
T d1luaa1 93 AHFVFTAGAI 102 (191)
T ss_dssp CSEEEECCCT
T ss_pred cCeeeecCcc
Confidence 8999987654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=81.64 E-value=0.28 Score=35.07 Aligned_cols=55 Identities=18% Similarity=0.042 Sum_probs=39.4
Q ss_pred CeeEEeCCCCCc--CCCCCceeEEEEcccccCc--------------ccHHHHHHHHhcccCCCcEEEEEe
Q 027517 89 NIEWVEGDALDL--PFSDCFFDAITMGYGLRNV--------------VDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 89 ~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~--------------~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+-.++++|..+. .++++++|+|+..-....- ......+..++++|+|+|.+++..
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~ 82 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 82 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccc
Confidence 447888887652 2567889999986554211 114567999999999999998754
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=81.61 E-value=2.5 Score=29.57 Aligned_cols=81 Identities=9% Similarity=0.010 Sum_probs=51.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 102 (222)
.++++|--|++.| ....+++.+ ..+.+|+.+|.+++.++...+.+..... .++..+..|+.+.. .
T Consensus 24 ~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g---~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 24 QGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG---NKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS---SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC---CceEEEEecccChHHHHHHhhhhhh
Confidence 3577888887655 433333322 2367999999999887776655533221 47788889987632 1
Q ss_pred CCCceeEEEEcccccC
Q 027517 103 SDCFFDAITMGYGLRN 118 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~ 118 (222)
..+..|+++.+.....
T Consensus 100 ~~g~iDilvnnAg~~~ 115 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNF 115 (294)
T ss_dssp HTCSCSEEEECCCCCC
T ss_pred hccccchhhhhhhhcc
Confidence 1246899887665443
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.51 E-value=0.95 Score=33.29 Aligned_cols=81 Identities=19% Similarity=0.087 Sum_probs=44.6
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcc-------------hhhhhhhcCCCeeEEeCCCCCc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSR-------------QDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~-------------~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
|++||=-| |+|....++++.+ ..+.+|+++|.-.......... ..........+++++.+|+.+.
T Consensus 1 g~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIG-GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 46888888 5887777776544 3457899999322111111100 0000001115799999999874
Q ss_pred C-----CCCCceeEEEEcccc
Q 027517 101 P-----FSDCFFDAITMGYGL 116 (222)
Q Consensus 101 ~-----~~~~~~D~v~~~~~l 116 (222)
. +...++|+|+-..+.
T Consensus 80 ~~l~~~~~~~~~d~ViHlAa~ 100 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFGEQ 100 (393)
T ss_dssp HHHHHHHHHHCCSEEEECCSC
T ss_pred HHHHHHHHhhcchheeccccc
Confidence 2 122247888865543
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=81.06 E-value=0.94 Score=29.54 Aligned_cols=82 Identities=11% Similarity=0.002 Sum_probs=44.0
Q ss_pred CCCeEEEecCCCCh-hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC---cCCCCCceeE
Q 027517 34 TGDNVLDVCCGSGD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD---LPFSDCFFDA 109 (222)
Q Consensus 34 ~~~~vLdiG~G~G~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~~D~ 109 (222)
.+++||=+|||.-. .....+... ...+++.++-+++..+.+.......... ........+..+ +......+|+
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~-g~~~i~i~nR~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~di 93 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRDEFFDKALAFAQRVNEN--TDCVVTVTDLADQQAFAEALASADI 93 (182)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECSSTTHHHHHHHHHHHHHH--SSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred CCCEEEEECCcHHHHHHHHHHhhc-CCceEeeeccchHHHHHHHHHHHHHHhh--cCcceEeeecccccchhhhhcccce
Confidence 56799999998422 222223332 2237899998887777665544333222 122233333332 1111135799
Q ss_pred EEEcccccC
Q 027517 110 ITMGYGLRN 118 (222)
Q Consensus 110 v~~~~~l~~ 118 (222)
|+..-++..
T Consensus 94 iIN~Tp~G~ 102 (182)
T d1vi2a1 94 LTNGTKVGM 102 (182)
T ss_dssp EEECSSTTS
T ss_pred eccccCCcc
Confidence 997766543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=80.99 E-value=2.3 Score=29.31 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=52.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----------
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------- 101 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------- 101 (222)
.++.+|=-|++.| ....+++.+ ..+++|+..|.+++.++...+.+...+ .++.++..|+.+..
T Consensus 7 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d2ae2a_ 7 EGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG----FKVEASVCDLSSRSERQELMNTVAN 81 (259)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEeeCCCHHHHHHHHHHHHH
Confidence 4678888886654 333333222 236799999999998888776664433 46788889987631
Q ss_pred CCCCceeEEEEcccccC
Q 027517 102 FSDCFFDAITMGYGLRN 118 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~ 118 (222)
....+.|+++.+.....
T Consensus 82 ~~~~~idilvnnAG~~~ 98 (259)
T d2ae2a_ 82 HFHGKLNILVNNAGIVI 98 (259)
T ss_dssp HTTTCCCEEEECCCCCC
T ss_pred HhCCCceEEEECCceec
Confidence 11236899998766443
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=80.80 E-value=3.1 Score=28.66 Aligned_cols=78 Identities=19% Similarity=0.070 Sum_probs=51.4
Q ss_pred CCCeEEEecCCCCh---hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---------
Q 027517 34 TGDNVLDVCCGSGD---LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------- 101 (222)
Q Consensus 34 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------- 101 (222)
.++.+|=-|++.|- .+..|++ .+++|..+|.+++.++...+.......+ .++..++.|+.+..
T Consensus 3 ~gK~alITGas~GIG~aia~~la~---~Ga~V~i~~r~~~~l~~~~~~~~~~~~~--~~~~~~~~Dvt~~~~v~~~~~~~ 77 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAA---EGAKLSLVDVSSEGLEASKAAVLETAPD--AEVLTTVADVSDEAQVEAYVTAT 77 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHCTT--CCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhhCCC--CeEEEEeccCCCHHHHHHHHHHH
Confidence 35678888876652 2344443 3679999999999888776665433221 46788899987732
Q ss_pred -CCCCceeEEEEcccc
Q 027517 102 -FSDCFFDAITMGYGL 116 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l 116 (222)
..-++.|+++.+..+
T Consensus 78 ~~~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 78 TERFGRIDGFFNNAGI 93 (258)
T ss_dssp HHHHSCCSEEEECCCC
T ss_pred HHHhCCCCEEEECCcc
Confidence 011468999976653
|