Citrus Sinensis ID: 027520

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
MKVPRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGNGIYEAVEKPAPHVTYSKEHQCHQVFHLF
cccccEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEEcccEEEcccccccccccccHHHHHHcccEEEEccccccccEEccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEcEEEccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHHHHHHcccEEEEEcc
ccccccEEEEHcccccHHHHHHHHHHHHHHccccccccEEEEEEccccEEccccccHHHcccccHHHHHccccEEEEccccEEEEcccccEEEEEEEEHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccHHEEEEEEEEEcccEEcEEEEEccccccccccccccccccccHEEHHHccccccHHHHHHHHHHHHHHHHccccHEHHcc
MKVPRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDtllslqhpptytlgkrrtdhnlLISEAELKKLGAELHytqrggditfhgphqailypiislrdiglGARNYVEKLESTMIEIASLygvkacpgqkgetgiwvgdrkigAIGVRIQYgitshglafnidpdlnyfkhivpcgiadkdvTSLRRETGNGIYeavekpaphvtyskehqchqvfhlf
mkvprslqiwrLGIVNYSDALKLQEKLVSDRKIHKisdtllslqhpptytlgkrrtdhnLLISEAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGNGIYEAVEKPAPHVTYSKEHQCHQVFHLF
MKVPRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGNGIYEAVEKPAPHVTYSKEHQCHQVFHLF
******LQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGNGIYEAVEKPAPHVTYS**HQCHQVF***
****RSL*IWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGNGIYEAVEKPAPHVTYSKEHQCHQVFHLF
MKVPRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGNGIYEAVEKPAPHVTYSKEHQCHQVFHLF
**VPRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGNGIYEAVEKPAPHVTYSKEHQCHQVFHLF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKVPRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGNGIYEAVEKPAPHVTYSKEHQCHQVFHLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query222 2.2.26 [Sep-21-2011]
Q9SXP7235 Octanoyltransferase OS=Ar yes no 0.864 0.817 0.807 2e-89
A4J246228 Octanoyltransferase OS=De yes no 0.837 0.815 0.441 2e-40
A4XHV1235 Octanoyltransferase OS=Ca yes no 0.860 0.812 0.421 4e-39
C1F3S1246 Octanoyltransferase OS=Ac yes no 0.923 0.833 0.406 1e-37
B8G783221 Octanoyltransferase OS=Ch yes no 0.842 0.846 0.425 3e-37
B9LM66223 Octanoyltransferase OS=Ch yes no 0.923 0.919 0.419 3e-37
A9WKF8223 Octanoyltransferase OS=Ch yes no 0.923 0.919 0.419 3e-37
Q1IIJ5251 Octanoyltransferase OS=Ko yes no 0.896 0.792 0.420 8e-37
Q7MUY1492 Octanoyltransferase OS=Po yes no 0.810 0.365 0.437 8e-37
B9MQ23228 Octanoyltransferase OS=Ca yes no 0.833 0.811 0.419 1e-36
>sp|Q9SXP7|LIPB_ARATH Octanoyltransferase OS=Arabidopsis thaliana GN=LIP2 PE=1 SV=1 Back     alignment and function desciption
 Score =  328 bits (840), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 155/192 (80%), Positives = 171/192 (89%)

Query: 1   MKVPRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNL 60
           M+ PR+L++W+LG VNY  +LKLQEKLVS+RK H+I DTLLSLQHPPTYTLGKRRTDHNL
Sbjct: 1   MRSPRTLEVWKLGTVNYLKSLKLQEKLVSERKAHQIPDTLLSLQHPPTYTLGKRRTDHNL 60

Query: 61  LISEAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEI 120
           LI E+EL K+GAELHYTQRGGDITFHGPHQAILYPIISLR IG GARNYVE LE +MIE 
Sbjct: 61  LIPESELTKIGAELHYTQRGGDITFHGPHQAILYPIISLRSIGFGARNYVETLERSMIEF 120

Query: 121 ASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGI 180
           AS+YGVKA  G K ETG+WVGDRKIGAIGVRI  GITSHGLA NIDPD+ YF+HIVPCGI
Sbjct: 121 ASIYGVKARAGNKCETGVWVGDRKIGAIGVRISSGITSHGLALNIDPDMKYFEHIVPCGI 180

Query: 181 ADKDVTSLRRET 192
           ADK+VTSLRRET
Sbjct: 181 ADKEVTSLRRET 192
Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 8EC: 1
>sp|A4J246|LIPB_DESRM Octanoyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|A4XHV1|LIPB_CALS8 Octanoyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|C1F3S1|LIPB_ACIC5 Octanoyltransferase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|B8G783|LIPB_CHLAD Octanoyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|B9LM66|LIPB_CHLSY Octanoyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|A9WKF8|LIPB_CHLAA Octanoyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q1IIJ5|LIPB_KORVE Octanoyltransferase OS=Koribacter versatilis (strain Ellin345) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q7MUY1|LIPB_PORGI Octanoyltransferase OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|B9MQ23|LIPB_CALBD Octanoyltransferase OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=lipB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
255570027223 lipoate-protein ligase B, putative [Rici 0.972 0.968 0.751 4e-93
225435592235 PREDICTED: octanoyltransferase [Vitis vi 0.864 0.817 0.848 6e-92
224053022239 predicted protein [Populus trichocarpa] 0.873 0.811 0.829 1e-89
297843274 333 hypothetical protein ARALYDRAFT_311551 [ 0.864 0.576 0.817 3e-88
356574317234 PREDICTED: octanoyltransferase-like [Gly 0.891 0.846 0.772 6e-88
2494127 333 Contains similarity to Mycobacterium LIP 0.864 0.576 0.807 1e-87
15219770235 lipoyl(octanoyl) transferase [Arabidopsi 0.864 0.817 0.807 1e-87
449476008266 PREDICTED: octanoyltransferase-like isof 0.864 0.721 0.802 4e-87
115452725241 Os03g0321800 [Oryza sativa Japonica Grou 0.905 0.834 0.695 6e-82
357112453242 PREDICTED: octanoyltransferase-like [Bra 0.905 0.830 0.714 9e-82
>gi|255570027|ref|XP_002525976.1| lipoate-protein ligase B, putative [Ricinus communis] gi|223534708|gb|EEF36400.1| lipoate-protein ligase B, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  346 bits (888), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 169/225 (75%), Positives = 190/225 (84%), Gaps = 9/225 (4%)

Query: 1   MKVPRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNL 60
           M+  RSLQ+W+LG VNY +ALKLQEKLV+DRK  KI DT+LSLQHPPTYTLGKRRTDHNL
Sbjct: 1   MRSSRSLQVWKLGTVNYLEALKLQEKLVADRKASKIPDTILSLQHPPTYTLGKRRTDHNL 60

Query: 61  LISEAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEI 120
           LI  +EL+K+GAELHYTQRGGDIT+HGP QA+LYPIISLRDIGLGARNYVEKLESTMIE+
Sbjct: 61  LIPTSELQKIGAELHYTQRGGDITYHGPRQAVLYPIISLRDIGLGARNYVEKLESTMIEL 120

Query: 121 ASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGI 180
           A LYGVKAC GQKGETG+WVGDRKIGAIGVRI  GITSHGLAFNIDP+LNYFK+IVPCGI
Sbjct: 121 ALLYGVKACAGQKGETGVWVGDRKIGAIGVRISSGITSHGLAFNIDPNLNYFKNIVPCGI 180

Query: 181 ADKDVTSLRRETGNGIYEAVEKPAPHVTYSKEHQCHQV---FHLF 222
            DK+VTSLRRETG      V  P+  V +++     QV    H+F
Sbjct: 181 VDKEVTSLRRETG------VVLPSDEVLWNENSTLLQVESAIHMF 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225435592|ref|XP_002283248.1| PREDICTED: octanoyltransferase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224053022|ref|XP_002297668.1| predicted protein [Populus trichocarpa] gi|222844926|gb|EEE82473.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297843274|ref|XP_002889518.1| hypothetical protein ARALYDRAFT_311551 [Arabidopsis lyrata subsp. lyrata] gi|297335360|gb|EFH65777.1| hypothetical protein ARALYDRAFT_311551 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356574317|ref|XP_003555295.1| PREDICTED: octanoyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|2494127|gb|AAB80636.1| Contains similarity to Mycobacterium LIPB gene (gb|Q104041) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15219770|ref|NP_171958.1| lipoyl(octanoyl) transferase [Arabidopsis thaliana] gi|79316647|ref|NP_001030961.1| lipoyl(octanoyl) transferase [Arabidopsis thaliana] gi|75213274|sp|Q9SXP7.1|LIPB_ARATH RecName: Full=Octanoyltransferase; AltName: Full=Lipoate biosynthesis protein; AltName: Full=Lipoate-protein ligase; AltName: Full=Lipoyl ligase; AltName: Full=Lipoyl/octanoyl transferase; AltName: Full=Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase gi|16226271|gb|AAL16120.1|AF428288_1 At1g04640/T1G11_10 [Arabidopsis thaliana] gi|4996286|dbj|BAA78386.1| lipoyltransferase [Arabidopsis thaliana] gi|22137226|gb|AAM91458.1| At1g04640/T1G11_10 [Arabidopsis thaliana] gi|332189605|gb|AEE27726.1| lipoyl(octanoyl) transferase [Arabidopsis thaliana] gi|332189606|gb|AEE27727.1| lipoyl(octanoyl) transferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449476008|ref|XP_004154613.1| PREDICTED: octanoyltransferase-like isoform 1 [Cucumis sativus] gi|449476010|ref|XP_004154614.1| PREDICTED: octanoyltransferase-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|115452725|ref|NP_001049963.1| Os03g0321800 [Oryza sativa Japonica Group] gi|108707877|gb|ABF95672.1| lipoate-protein ligase, putative, expressed [Oryza sativa Japonica Group] gi|113548434|dbj|BAF11877.1| Os03g0321800 [Oryza sativa Japonica Group] gi|215686427|dbj|BAG87712.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767033|dbj|BAG99261.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357112453|ref|XP_003558023.1| PREDICTED: octanoyltransferase-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
TAIR|locus:2197818235 LIP2 "lipoyltransferase 2" [Ar 0.864 0.817 0.807 2.8e-82
ZFIN|ZDB-GENE-060312-18224 zgc:136925 "zgc:136925" [Danio 0.846 0.839 0.430 2.8e-34
FB|FBgn0037251234 CG9804 [Drosophila melanogaste 0.806 0.764 0.421 1.8e-32
UNIPROTKB|F1SUQ1225 LOC100739011 "Putative lipoylt 0.819 0.808 0.432 9.8e-32
UNIPROTKB|I3LDL3225 LOC100739011 "Putative lipoylt 0.819 0.808 0.432 1.3e-31
RGD|1305211231 Lipt2 "lipoyl(octanoyl) transf 0.828 0.796 0.422 1.8e-30
UNIPROTKB|A6NK58231 LIPT2 "Putative lipoyltransfer 0.941 0.904 0.394 2.3e-30
TAIR|locus:2126609278 AT4G31050 [Arabidopsis thalian 0.882 0.705 0.355 3e-30
MGI|MGI:1914414231 Lipt2 "lipoyl(octanoyl) transf 0.828 0.796 0.422 6.2e-30
UNIPROTKB|Q10404230 lipB "Octanoyltransferase" [My 0.810 0.782 0.410 7.9e-30
TAIR|locus:2197818 LIP2 "lipoyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 155/192 (80%), Positives = 171/192 (89%)

Query:     1 MKVPRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNL 60
             M+ PR+L++W+LG VNY  +LKLQEKLVS+RK H+I DTLLSLQHPPTYTLGKRRTDHNL
Sbjct:     1 MRSPRTLEVWKLGTVNYLKSLKLQEKLVSERKAHQIPDTLLSLQHPPTYTLGKRRTDHNL 60

Query:    61 LISEAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEI 120
             LI E+EL K+GAELHYTQRGGDITFHGPHQAILYPIISLR IG GARNYVE LE +MIE 
Sbjct:    61 LIPESELTKIGAELHYTQRGGDITFHGPHQAILYPIISLRSIGFGARNYVETLERSMIEF 120

Query:   121 ASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGI 180
             AS+YGVKA  G K ETG+WVGDRKIGAIGVRI  GITSHGLA NIDPD+ YF+HIVPCGI
Sbjct:   121 ASIYGVKARAGNKCETGVWVGDRKIGAIGVRISSGITSHGLALNIDPDMKYFEHIVPCGI 180

Query:   181 ADKDVTSLRRET 192
             ADK+VTSLRRET
Sbjct:   181 ADKEVTSLRRET 192
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0009107 "lipoate biosynthetic process" evidence=IEA
GO:0016415 "octanoyltransferase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009106 "lipoate metabolic process" evidence=IGI;RCA
GO:0009249 "protein lipoylation" evidence=IDA
GO:0017118 "lipoyltransferase activity" evidence=IGI
GO:0033819 "lipoyl(octanoyl) transferase activity" evidence=IDA
GO:0000096 "sulfur amino acid metabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006546 "glycine catabolic process" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA
GO:0006766 "vitamin metabolic process" evidence=RCA
GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA
GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA
GO:0009108 "coenzyme biosynthetic process" evidence=RCA
GO:0009117 "nucleotide metabolic process" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019748 "secondary metabolic process" evidence=RCA
GO:0044272 "sulfur compound biosynthetic process" evidence=RCA
ZFIN|ZDB-GENE-060312-18 zgc:136925 "zgc:136925" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0037251 CG9804 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUQ1 LOC100739011 "Putative lipoyltransferase 2, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDL3 LOC100739011 "Putative lipoyltransferase 2, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1305211 Lipt2 "lipoyl(octanoyl) transferase 2 (putative)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A6NK58 LIPT2 "Putative lipoyltransferase 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2126609 AT4G31050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1914414 Lipt2 "lipoyl(octanoyl) transferase 2 (putative)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q10404 lipB "Octanoyltransferase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A6TWD0LIPB_ALKMQ2, ., 3, ., 1, ., 1, 8, 10.39890.83780.8532yesno
A9WKF8LIPB_CHLAA2, ., 3, ., 1, ., 1, 8, 10.41960.92340.9192yesno
A6GYW1LIPB_FLAPJ2, ., 3, ., 1, ., 1, 8, 10.39020.84680.8103yesno
A5FIL6LIPB_FLAJ12, ., 3, ., 1, ., 1, 8, 10.40.84680.8103yesno
Q02AK4LIPB_SOLUE2, ., 3, ., 1, ., 1, 8, 10.44020.81980.8272yesno
Q1AT14LIPB_RUBXD2, ., 3, ., 1, ., 1, 8, 10.44890.83780.8416yesno
B9MQ23LIPB_CALBD2, ., 3, ., 1, ., 1, 8, 10.41930.83330.8114yesno
A0LIW0LIPB_SYNFM2, ., 3, ., 1, ., 1, 8, 10.37290.82880.8070yesno
A0M5H7LIPB_GRAFK2, ., 3, ., 1, ., 1, 8, 10.39510.84680.8034yesno
B9LM66LIPB_CHLSY2, ., 3, ., 1, ., 1, 8, 10.41960.92340.9192yesno
Q9SXP7LIPB_ARATH2, ., 3, ., 1, ., 1, 8, 10.80720.86480.8170yesno
A0LTE0LIPB_ACIC12, ., 3, ., 1, ., 1, 8, 10.40300.81980.8235yesno
Q0VFH3LIPT2_XENTR2, ., 3, ., 1, ., 1, 8, 10.41960.95490.8870yesno
Q5SLQ3LIPB_THET82, ., 3, ., 1, ., 1, 8, 10.39450.81530.8341yesno
B0K3J8LIPB_THEPX2, ., 3, ., 1, ., 1, 8, 10.4450.86480.8421yesno
Q64UP8LIPB_BACFR2, ., 3, ., 1, ., 1, 8, 10.42920.82430.8280yesno
B0K8D0LIPB_THEP32, ., 3, ., 1, ., 1, 8, 10.4450.86480.8421yesno
Q72GV2LIPB_THET22, ., 3, ., 1, ., 1, 8, 10.39450.81530.8341yesno
Q29R99LIPT2_DANRE2, ., 3, ., 1, ., 1, 8, 10.39330.92790.9196yesno
Q6ARJ9LIPB_DESPS2, ., 3, ., 1, ., 1, 8, 10.40320.81980.8161yesno
B8G783LIPB_CHLAD2, ., 3, ., 1, ., 1, 8, 10.42560.84230.8461yesno
C1F3S1LIPB_ACIC52, ., 3, ., 1, ., 1, 8, 10.40610.92340.8333yesno
A4J246LIPB_DESRM2, ., 3, ., 1, ., 1, 8, 10.44140.83780.8157yesno
Q5LDM3LIPB_BACFN2, ., 3, ., 1, ., 1, 8, 10.42920.82430.8280yesno
A4XHV1LIPB_CALS82, ., 3, ., 1, ., 1, 8, 10.42180.86030.8127yesno
A6L9E1LIPB_PARD82, ., 3, ., 1, ., 1, 8, 10.4150.84680.8506yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.10.976
3rd Layer2.3.1.1810.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024702001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (235 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00002605001
SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (372 aa)
• •  •• 0.992
GSVIVG00005146001
SubName- Full=Chromosome undetermined scaffold_937, whole genome shotgun sequence; (241 aa)
  •  •  0.936
GSVIVG00003955001
SubName- Full=Chromosome undetermined scaffold_569, whole genome shotgun sequence; (373 aa)
• •  •• 0.907
GSVIVG00019672001
RecName- Full=Dihydrolipoyl dehydrogenase; EC=1.8.1.4; (502 aa)
•  •  • 0.616
GSVIVG00035063001
SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (127 aa)
•     • 0.553
GSVIVG00010970001
RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (408 aa)
•  •  • 0.479
GSVIVG00035969001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (354 aa)
•  •    0.465
GSVIVG00010806001
SubName- Full=Chromosome chr13 scaffold_286, whole genome shotgun sequence; (552 aa)
• •   • 0.439
rpoC2
RecName- Full=DNA-directed RNA polymerase; EC=2.7.7.6;; DNA-dependent RNA polymerase catalyzes [...] (692 aa)
      • 0.428
GSVIVG00019749001
SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (161 aa)
   •  • 0.417

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
COG0321221 COG0321, LipB, Lipoate-protein ligase B [Coenzyme 2e-58
PRK14345234 PRK14345, PRK14345, lipoate-protein ligase B; Prov 8e-57
PRK14348221 PRK14348, PRK14348, lipoate-protein ligase B; Prov 3e-46
TIGR00214184 TIGR00214, lipB, lipoate-protein ligase B 1e-40
PRK14341213 PRK14341, PRK14341, lipoate-protein ligase B; Prov 5e-36
PRK14342213 PRK14342, PRK14342, lipoate-protein ligase B; Prov 1e-34
PRK14344223 PRK14344, PRK14344, lipoate-protein ligase B; Prov 4e-31
PRK14343235 PRK14343, PRK14343, lipoate-protein ligase B; Prov 1e-27
PRK14347209 PRK14347, PRK14347, lipoate-protein ligase B; Prov 8e-26
PRK14349220 PRK14349, PRK14349, lipoate-protein ligase B; Prov 5e-22
PRK14346230 PRK14346, PRK14346, lipoate-protein ligase B; Prov 1e-18
pfam03099124 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B prote 2e-15
>gnl|CDD|223398 COG0321, LipB, Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information 
 Score =  183 bits (466), Expect = 2e-58
 Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 8/189 (4%)

Query: 4   PRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLIS 63
           P+ + +  LG+V+Y +A +L E     R      D +  ++HPP YT G+     +LL+ 
Sbjct: 8   PKIILVRELGLVDYQEAWQLMETFTDARADGGTPDEIWLVEHPPVYTAGQAGKAEHLLMP 67

Query: 64  EAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASL 123
           +         +  T RGG +T+HGP Q + YPI+ L+   L  R YV  LE  +I   + 
Sbjct: 68  D------DIPVVQTDRGGQVTYHGPGQLVAYPILDLKRPKLDVREYVRALEQAVINTLAE 121

Query: 124 YGVKACPGQKGETGIWV-GDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIAD 182
           YG++A   +    G+WV  +RKI AIG+RI+ G+T HGLA N++ DL+ F  IVPCG A 
Sbjct: 122 YGIEAER-RPDRPGVWVEEERKIAAIGIRIRRGVTFHGLALNVNMDLSPFNRIVPCGYAG 180

Query: 183 KDVTSLRRE 191
            +VTSL   
Sbjct: 181 MEVTSLSDL 189

Length = 221
>gnl|CDD|184638 PRK14345, PRK14345, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|172824 PRK14348, PRK14348, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|232877 TIGR00214, lipB, lipoate-protein ligase B Back     alignment and domain information
>gnl|CDD|237680 PRK14341, PRK14341, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237681 PRK14342, PRK14342, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237683 PRK14344, PRK14344, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237682 PRK14343, PRK14343, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|172823 PRK14347, PRK14347, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|172825 PRK14349, PRK14349, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237684 PRK14346, PRK14346, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|217367 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 222
PRK14348221 lipoate-protein ligase B; Provisional 100.0
PRK14342213 lipoate-protein ligase B; Provisional 100.0
PRK14345234 lipoate-protein ligase B; Provisional 100.0
PRK14341213 lipoate-protein ligase B; Provisional 100.0
PRK14343235 lipoate-protein ligase B; Provisional 100.0
PRK14344223 lipoate-protein ligase B; Provisional 100.0
COG0321221 LipB Lipoate-protein ligase B [Coenzyme metabolism 100.0
PRK14347209 lipoate-protein ligase B; Provisional 100.0
PRK14346230 lipoate-protein ligase B; Provisional 100.0
PRK14349220 lipoate-protein ligase B; Provisional 100.0
TIGR00214184 lipB lipoate-protein ligase B. Involved in lipoate 100.0
KOG0325226 consensus Lipoyltransferase [Energy production and 100.0
TIGR00545 324 lipoyltrans lipoyltransferase and lipoate-protein 99.81
PRK03822 338 lplA lipoate-protein ligase A; Provisional 99.81
COG0095248 LplA Lipoate-protein ligase A [Coenzyme metabolism 99.76
PRK14061 562 unknown domain/lipoate-protein ligase A fusion pro 99.76
PF03099125 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase f 99.54
PRK08330236 biotin--protein ligase; Provisional 99.49
KOG3159 336 consensus Lipoate-protein ligase A [Coenzyme trans 99.09
PRK05935190 biotin--protein ligase; Provisional 98.43
COG0340238 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenz 98.07
TIGR00121237 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] 97.99
PTZ00275285 biotin-acetyl-CoA-carboxylase ligase; Provisional 97.77
PRK11886319 bifunctional biotin--[acetyl-CoA-carboxylase] synt 97.62
PTZ00276245 biotin/lipoate protein ligase; Provisional 97.58
PRK08477211 biotin--protein ligase; Provisional 96.88
PRK13325 592 bifunctional biotin--[acetyl-CoA-carboxylase] liga 96.55
PRK06955300 biotin--protein ligase; Provisional 96.25
KOG0325226 consensus Lipoyltransferase [Energy production and 92.27
KOG1536649 consensus Biotin holocarboxylase synthetase/biotin 85.66
>PRK14348 lipoate-protein ligase B; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.8e-73  Score=488.24  Aligned_cols=207  Identities=39%  Similarity=0.629  Sum_probs=194.0

Q ss_pred             eEEEEcCccCHHHHHHHHHHHHHHHhc----CC-CCCEEEEEeCCCeeeecCCCCCCCCCCcHHHHhhcCCeEEEeecCC
Q 027520            7 LQIWRLGIVNYSDALKLQEKLVSDRKI----HK-ISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGG   81 (222)
Q Consensus         7 l~v~~lg~~~Y~~~~~~Q~~l~~~~~~----~~-~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG   81 (222)
                      ..++++|+++|.+||++|+++++.+.+    +. .+|+||+||||||||+|+++++++++.+++.+++.|++|++|+|||
T Consensus         3 ~~~~~lg~~~Y~~a~~~q~~~~~~~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~ll~~~~~l~~~~~~v~~t~RGG   82 (221)
T PRK14348          3 TITTDWELIPYSEAWSRQTEWFDALVHAKQNGESYENRIIFCEHPHVYTLGRSGKENNMLLGEEQLKTIGATLYHIDRGG   82 (221)
T ss_pred             EEEEecCCcCHHHHHHHHHHHHHHHHhhhhcCCCCCCEEEEEcCCCCeeCCcCCCchhccCChhhhcccCCcEEEeCCCC
Confidence            467899999999999999988876543    22 3699999999999999999999999988888999999999999999


Q ss_pred             ceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEec-----CCeEeeecceeeeee
Q 027520           82 DITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVG-----DRKIGAIGVRIQYGI  156 (222)
Q Consensus        82 ~iTyHgPGQLv~YpIl~l~~~~~~~~~yv~~Le~~~i~~l~~~gi~a~~~~~~~~GVwv~-----~~KIasiGv~i~~~v  156 (222)
                      ++|||||||||+|||+||++++.++++|++.||+++|++|++|||++ .+.++++||||+     ++||||||+++++||
T Consensus        83 ~iTyHGPGQlV~Ypil~L~~~~~~v~~yv~~lE~~vI~~l~~~gi~~-~~~~~~~GVWv~~~~~~~~KIaaIGv~v~r~v  161 (221)
T PRK14348         83 DITYHGPGQLVCYPILNLEEFGLGLKEYVHLLEEAVIRVCASYGVVA-GRLEKATGVWLEGDTSRARKICAIGVRSSHYV  161 (221)
T ss_pred             ceEEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCce-eecCCCCCEEecCCCCCCCcEEEEeEEeccce
Confidence            99999999999999999999999999999999999999999999999 578899999998     589999999999999


Q ss_pred             eeeccccccCCCccccccccCCCCCCCcceeehhhhcCCccccccccccccchhhhhC
Q 027520          157 TSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGNGIYEAVEKPAPHVTYSKEHQ  214 (222)
Q Consensus       157 t~HG~aLNv~~dL~~f~~I~pCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~f~~~~~  214 (222)
                      |+||||||||+||++|+.|+|||++|+.||||++++|..++.+++++.....|++.|+
T Consensus       162 T~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~l~~~f~~~~~  219 (221)
T PRK14348        162 TMHGLALNVNTDLRYFSYIHPCGFIDKGVTSLQQELGHSIDMAEVKERLGRELLAALL  219 (221)
T ss_pred             eecceEEEecCChHHhccCccCCCCCCcEEeeHHHhCCCCCHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999899988775

>PRK14342 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14345 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14341 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14343 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14344 lipoate-protein ligase B; Provisional Back     alignment and domain information
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information
>PRK14347 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14346 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14349 lipoate-protein ligase B; Provisional Back     alignment and domain information
>TIGR00214 lipB lipoate-protein ligase B Back     alignment and domain information
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase Back     alignment and domain information
>PRK03822 lplA lipoate-protein ligase A; Provisional Back     alignment and domain information
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism] Back     alignment and domain information
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional Back     alignment and domain information
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B Back     alignment and domain information
>PRK08330 biotin--protein ligase; Provisional Back     alignment and domain information
>KOG3159 consensus Lipoate-protein ligase A [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK05935 biotin--protein ligase; Provisional Back     alignment and domain information
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] Back     alignment and domain information
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region Back     alignment and domain information
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional Back     alignment and domain information
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional Back     alignment and domain information
>PTZ00276 biotin/lipoate protein ligase; Provisional Back     alignment and domain information
>PRK08477 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed Back     alignment and domain information
>PRK06955 biotin--protein ligase; Provisional Back     alignment and domain information
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism] Back     alignment and domain information
>KOG1536 consensus Biotin holocarboxylase synthetase/biotin-protein ligase [Coenzyme transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
2qhs_A237 Structural Basis Of Octanoic Acid Recognition By Li 9e-36
2qht_A210 Structural Basis Of Octanoic Acid Recognition By Li 9e-36
1w66_A232 Structure Of A Lipoate-protein Ligase B From Mycoba 1e-31
>pdb|2QHS|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate-protein Ligase B Length = 237 Back     alignment and structure 
Iteration: 1

 Score =  146 bits (368), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 113/185 (61%), Gaps = 4/185 (2%)
Query: 12  LGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLG 71
           LG+V Y +A   Q+++  +        TLL L+HP   TLG++ T  NLL  E+  ++ G
Sbjct: 28  LGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENG 87
Query: 72  AELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPG 131
            EL++ +RGGD+T+HGP Q + YPI     +G   R ++ ++E  ++ +A+ YG+ A P 
Sbjct: 88  FELYWVERGGDVTYHGPGQLVGYPIFP---VGREVRRFLRQIEEAIVRVAAGYGISAYP- 143
Query: 132 QKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRE 191
             G  G+WVG+ K+ AIGV ++ G++ HG A N++ DLN F  IVPCG+  K VTSL + 
Sbjct: 144 TPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKL 203
Query: 192 TGNGI 196
            G  +
Sbjct: 204 LGRKV 208
>pdb|2QHT|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate-Protein Ligase B Length = 210 Back     alignment and structure
>pdb|1W66|A Chain A, Structure Of A Lipoate-protein Ligase B From Mycobacterium Tuberculosis Length = 232 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 7e-90
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 3e-78
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Length = 237 Back     alignment and structure
 Score =  263 bits (674), Expect = 7e-90
 Identities = 72/193 (37%), Positives = 113/193 (58%), Gaps = 4/193 (2%)

Query: 4   PRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLIS 63
                +  LG+V Y +A   Q+++  +        TLL L+HP   TLG++ T  NLL  
Sbjct: 20  HMEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFP 79

Query: 64  EAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASL 123
           E+  ++ G EL++ +RGGD+T+HGP Q + YPI  +       R ++ ++E  ++ +A+ 
Sbjct: 80  ESWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAG 136

Query: 124 YGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADK 183
           YG+ A P   G  G+WVG+ K+ AIGV ++ G++ HG A N++ DLN F  IVPCG+  K
Sbjct: 137 YGISAYP-TPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGK 195

Query: 184 DVTSLRRETGNGI 196
            VTSL +  G  +
Sbjct: 196 GVTSLEKLLGRKV 208
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Length = 232 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 100.0
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 100.0
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 100.0
2c8m_A262 Lipoate-protein ligase A; lipoylation; HET: LPA; 1 100.0
2p5i_A288 BH3822 protein; PFAM03099, structural genomics, PS 100.0
1vqz_A 341 Lipoate-protein ligase, putative; class II AARS an 100.0
3a7r_A 337 Lipoate-protein ligase A; adenylate-forming enzyme 100.0
2e5a_A 347 Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 100.0
2dxu_A235 Biotin--[acetyl-COA-carboxylase] ligase; biotin bi 98.2
2eay_A233 Biotin [acetyl-COA-carboxylase] ligase; biotin bio 98.09
3rkx_A323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 97.92
2ej9_A237 Putative biotin ligase; biotin biosynthesis, monom 97.88
3rux_A270 BIRA bifunctional protein; biotin-protein ligase, 97.77
1bia_A321 BIRA bifunctional protein; transcription regulatio 97.69
3bfm_A235 Biotin protein ligase-like protein of unknown FUN; 97.68
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Back     alignment and structure
Probab=100.00  E-value=3.7e-64  Score=435.29  Aligned_cols=205  Identities=38%  Similarity=0.609  Sum_probs=192.4

Q ss_pred             CCceeEEEEcCccCHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCeeeecCCCCCCCCCCcHHHHhhcCCeEEEeecCCc
Q 027520            3 VPRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGD   82 (222)
Q Consensus         3 ~~~~l~v~~lg~~~Y~~~~~~Q~~l~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~   82 (222)
                      .++.++++++|++||.++|++|+.+++.+.++ .+|+|||+|||||||+|++++.++++       ..|++|++++|||+
T Consensus        10 ~~~~~~~~~lg~~~Y~~a~~~q~~l~~~~~~~-~~d~l~l~eh~pv~TiG~~q~~~~l~-------~~gi~Vvr~~rGG~   81 (232)
T 1w66_A           10 KLSAIDVRQLGTVDYRTAWQLQRELADARVAG-GADTLLLLEHPAVYTAGRRTETHERP-------IDGTPVVDTDRGGK   81 (232)
T ss_dssp             CCSCCEEEEEEECCHHHHHHHHHHHHHHHHTT-CCCEEEEEECCSEEEECTTCCGGGSC-------TTCCCCEECSSSSS
T ss_pred             cCceEEEEeCCCcCHHHHHHHHHHHHHHhhCC-CCCEEEEEecCCEEEeCCCCChhhhc-------ccCCeEEEecCCCc
Confidence            35678999999999999999999999988766 67999999999999999999987753       34899999999999


Q ss_pred             eeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEec---CCeEeeecceeeeeeeee
Q 027520           83 ITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVG---DRKIGAIGVRIQYGITSH  159 (222)
Q Consensus        83 iTyHgPGQLv~YpIl~l~~~~~~~~~yv~~Le~~~i~~l~~~gi~a~~~~~~~~GVwv~---~~KIasiGv~i~~~vt~H  159 (222)
                      +|||||||||+|||+|+++ +.++++|++.||+++|++|++|||+| .+.++++||||+   +|||||+|+++++|+|+|
T Consensus        82 ~tYHgPGQlv~Y~Il~l~~-~~~v~~~v~~le~~vI~~L~~~Gi~a-~~~~g~~gV~v~~~~~rKIaaig~r~~~~vt~H  159 (232)
T 1w66_A           82 ITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHA-GRVDGRSGVWLPGRPARKVAAIGVRVSRATTLH  159 (232)
T ss_dssp             EEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCC-EEETTEEEEEECSSSCEEEEEEEEEEETTEEEE
T ss_pred             eEEECCCCeEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHcCCCe-EecCCCCeEEecCCCCCEEEEeeeeeeCCEEEc
Confidence            9999999999999999988 88999999999999999999999999 466889999999   999999999999999999


Q ss_pred             ccccccCCCccccccccCCCCCCCcceeehhhhcCCccccccccccccchhhhhCcee
Q 027520          160 GLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGNGIYEAVEKPAPHVTYSKEHQCHQ  217 (222)
Q Consensus       160 G~aLNv~~dL~~f~~I~pCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  217 (222)
                      |+|||||+||++|..|+|||+.+++||||+++++..++.+++++++...|++.|++.+
T Consensus       160 G~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~~~~~ev~~~l~~~f~~~~~~~~  217 (232)
T 1w66_A          160 GFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVL  217 (232)
T ss_dssp             EEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             ceEEecCcChHHhcCccccccCCCceeeeHHHhCCCCCHHHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999999999999999999999998754
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Back     alignment and structure
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Back     alignment and structure
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Back     alignment and structure
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Back     alignment and structure
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Back     alignment and structure
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Back     alignment and structure
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Back     alignment and structure
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Back     alignment and structure
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* Back     alignment and structure
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A Back     alignment and structure
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Back     alignment and structure
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 222
d1w66a1216 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycoba 6e-41
d2c8ma1256 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Ther 3e-22
d2p5ia1265 d.104.1.3 (A:14-278) Hypothetical protein BH3822 { 4e-19
d1vqza2241 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-te 1e-18
d1x2ga2246 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal do 2e-17
d2p0la1269 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Stre 3e-15
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 216 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoyltransferase LipB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  136 bits (344), Expect = 6e-41
 Identities = 76/194 (39%), Positives = 104/194 (53%), Gaps = 11/194 (5%)

Query: 5   RSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISE 64
            ++ + +LG V+Y  A +LQ +L  D ++   +DTLL L+HP  YT G+R   H   I  
Sbjct: 10  SAIDVRQLGTVDYRTAWQLQRELA-DARVAGGADTLLLLEHPAVYTAGRRTETHERPIDG 68

Query: 65  AELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLY 124
             +         T RGG IT+HGP Q + YPII L +      NYV +LE ++I++ +  
Sbjct: 69  TPV-------VDTDRGGKITWHGPGQLVGYPIIGLAEPL-DVVNYVRRLEESLIQVCADL 120

Query: 125 GVKA--CPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIAD 182
           G+ A    G+ G        RK+ AIGVR+    T HG A N D DL  F  IVPCGI+D
Sbjct: 121 GLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISD 180

Query: 183 KDVTSLRRETGNGI 196
             VTSL  E G  +
Sbjct: 181 AAVTSLSAELGRTV 194
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Length = 256 Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Length = 265 Back     information, alignment and structure
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 241 Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Length = 269 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
d1w66a1216 Lipoyltransferase LipB {Mycobacterium tuberculosis 100.0
d2p0la1269 Lipoate-protein ligase A {Streptococcus agalactiae 99.97
d2c8ma1256 Lipoate-protein ligase A {Thermoplasma acidophilum 99.96
d1vqza2241 LplA-like protein SP1160, N-terminal domain {Strep 99.96
d2p5ia1265 Hypothetical protein BH3822 {Bacillus halodurans [ 99.96
d1x2ga2246 Two-domain LplA, N-terminal domain {Escherichia co 99.95
d2zgwa2188 Biotin--[acetyl-CoA-carboxylase] ligase catalytic 98.68
d1biaa3207 Biotin repressor/biotin holoenzyme synthetase, cat 97.42
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoyltransferase LipB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3e-70  Score=466.77  Aligned_cols=204  Identities=39%  Similarity=0.625  Sum_probs=191.2

Q ss_pred             CCceeEEEEcCccCHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCeeeecCCCCCCCCCCcHHHHhhcCCeEEEeecCCc
Q 027520            3 VPRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGD   82 (222)
Q Consensus         3 ~~~~l~v~~lg~~~Y~~~~~~Q~~l~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~   82 (222)
                      .++.+.+++||++||+++|++|+++++.+.++ .+|++|+||||||||+|++++.++++.       .++||++|+|||+
T Consensus         8 ~~~~i~i~~LG~v~Y~~a~~~q~~~~~~~~~~-~~d~llllEH~pVyT~G~~~~~~~~~~-------~~i~v~~tdRGG~   79 (216)
T d1w66a1           8 KLSAIDVRQLGTVDYRTAWQLQRELADARVAG-GADTLLLLEHPAVYTAGRRTETHERPI-------DGTPVVDTDRGGK   79 (216)
T ss_dssp             CCSCCEEEEEEECCHHHHHHHHHHHHHHHHTT-CCCEEEEEECCSEEEECTTCCGGGSCT-------TCCCCEECSSSSS
T ss_pred             cCCceEEEECCccCHHHHHHHHHHHHHHHhCC-CCCeEEEEecCCceeecccCccccccc-------cccceeecCCCce
Confidence            46789999999999999999999999988766 589999999999999999998777653       3899999999999


Q ss_pred             eeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCC---eEeeecceeeeeeeee
Q 027520           83 ITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDR---KIGAIGVRIQYGITSH  159 (222)
Q Consensus        83 iTyHgPGQLv~YpIl~l~~~~~~~~~yv~~Le~~~i~~l~~~gi~a~~~~~~~~GVwv~~~---KIasiGv~i~~~vt~H  159 (222)
                      +|||||||||+|||+||++ +.++++|++.||+++|++|++|||++ .+.++.+|||++++   ||||||+++++|||+|
T Consensus        80 vTyHGPGQlV~Ypil~l~~-~~~~~~~v~~le~~ii~~l~~~gi~~-~~~~~~~GVwv~~~~~~KIasiGv~v~~~vt~H  157 (216)
T d1w66a1          80 ITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHA-GRVDGRSGVWLPGRPARKVAAIGVRVSRATTLH  157 (216)
T ss_dssp             EEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCC-EEETTEEEEEECSSSCEEEEEEEEEEETTEEEE
T ss_pred             EEEecCCceeeEEEecccc-ccchhhhHHHHHHHHHHHHHhccccc-cccccCCceeeecchhhHHHHHHHHhccceeec
Confidence            9999999999999999986 67999999999999999999999999 57889999999875   9999999999999999


Q ss_pred             ccccccCCCccccccccCCCCCCCcceeehhhhcCCccccccccccccchhhhhCce
Q 027520          160 GLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGNGIYEAVEKPAPHVTYSKEHQCH  216 (222)
Q Consensus       160 G~aLNv~~dL~~f~~I~pCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~f~~~~~~~  216 (222)
                      |+|||||+||++|+.|+|||+++..||||++++|..++.+++++++...|++.|+..
T Consensus       158 G~alNv~~dL~~f~~I~pCGl~~~~vtSl~~~lg~~v~~~ev~~~l~~~~~~~f~~~  214 (216)
T d1w66a1         158 GFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV  214 (216)
T ss_dssp             EEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             ceEEeccCChhhcCeEEcCCCCCCceeeeHHHhCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999999999999999754
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Back     information, alignment and structure
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure