Citrus Sinensis ID: 027525

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSIWGSPRLEVIALKWTPIAIIVAVAAILLWANLVLTDEFIV
Secondary Structure (PSIPRED)
ccEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEccEEEEEEEEcccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEcccEEEEEEEEccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MVKMTIVGrvsdglplargprylnqehdsfSFYKQQAEFILKEIsrgalapskmtirvdHHSFHYLMENGIGCFItlcdssyprklAFHYLQDLQKEFQKFDISLidkitrpyscvkFESIIGNIRKQYVDTRTQANLSKlnanrgqdlDIVIEHMYQIVERKRQSEISEEILTATRKHvssiwgsprlevialkwtPIAIIVAVAAILLWANLvltdefiv
Flexible Loop (DISEMBL)
mvkmtivgrvsdglplarGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSklnanrgqdldIVIEHMYQIVERKRQSEISEEILTAtrkhvssiwgsPRLEVIALKWTPIAIIVAVAAILLWANLVLTDEFIV
Low Complexity Region (SEG)
MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSIWGSPRLEVIALKWTPiaiivavaaillwanlvlTDEFIV
Disordered region (IsUnstruct)
************GLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSIWGSPRLEVIALKWTPIAIIVAVAAILLWANLVLTDEFI*
Disordered Region (DISOPRED)
MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEF****************IRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFESIIGNIRK******************GQDLDIVIEHMYQIV***************************RLEVIALKWTPIAIIVAVAAILLWANLVLTDEFIV
Disordered Region (DISEMBL)
MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSIWGSPRLEVIALKWTPIAIIVAVAAILLWANLVLTDEFIV
Disordered Region (DISPRO)
MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSIWGSPRLEVIALKWTPIAIIVAVAAILLWANLVLTDEFIV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSIWGSPRLEVIALKWTPIAIIVAVAAILLWANLVLTDEFIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q94AU2	218	25.3 kDa vesicle transpor	no	no	0.936	0.954	0.386	3e-36
Q7SXP0	215	Vesicle-trafficking prote	yes	no	0.716	0.739	0.327	5e-25
Q5ZJW4	215	Vesicle-trafficking prote	yes	no	0.716	0.739	0.320	7e-25
Q4KM74	215	Vesicle-trafficking prote	yes	no	0.716	0.739	0.314	2e-24
Q5RAI9	215	Vesicle-trafficking prote	yes	no	0.716	0.739	0.314	2e-24
O08547	215	Vesicle-trafficking prote	yes	no	0.716	0.739	0.314	2e-24
Q6P7L4	215	Vesicle-trafficking prote	yes	no	0.716	0.739	0.327	3e-24
O08595	215	Vesicle-trafficking prote	yes	no	0.716	0.739	0.314	4e-24
Q7ZV15	215	Vesicle-trafficking prote	no	no	0.716	0.739	0.308	3e-22
O75396	215	Vesicle-trafficking prote	yes	no	0.716	0.739	0.302	6e-22

>sp|Q94AU2|SEC22_ARATH 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1

 Score =  151 bits (382), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/215 (38%), Positives = 129/215 (60%), Gaps = 7/215 (3%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MVKMT++ RV+DGLPLA G        DS   YKQQ + + K +SRG    S+M++    
Sbjct: 1   MVKMTLIARVTDGLPLAEGLDDGRDLPDS-DMYKQQVKALFKNLSRGQNDASRMSVETGP 59

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
           + FHY++E G  C++T+CD SYP+KLAF YL+DL+ EF++ +   I+   RPY+ +KF++
Sbjct: 60  YVFHYIIE-GRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETAARPYAFIKFDT 118

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIV---ERKRQ-SEISEEILTAT 176
            I   +K Y DTRTQ N++KLN    +   I+  ++ +++   E+  Q SE+S  + + +
Sbjct: 119 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSES 178

Query: 177 RKHVSSIWGSPRLEVIALKWTPIAIIVAVAAILLW 211
           R +        R  +I  KW P+AI+  V  +L W
Sbjct: 179 RIYADKAKDLNRQALIR-KWAPVAIVFGVVFLLFW 212

V-SNARE involved in vesicle trafficking from the ER to the Golgi complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7SXP0|S22BB_DANRE Vesicle-trafficking protein SEC22b-B OS=Danio rerio GN=sec22bb PE=2 SV=1

 Score =  114 bits (285), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 101/162 (62%), Gaps = 3/162 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MV +T++ R++DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct: 1   MVLLTMIARLADGLPLAASMQEDEQMGRDLQQYQSQAKQLFRKLNEQS--PNRCTLEAGS 58

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
            SFHY++E G+ C++ LC++ +P+KLAF YL+DLQ EF +     +  ++RPYS ++F++
Sbjct: 59  MSFHYVIEKGV-CYLVLCEAGFPKKLAFAYLEDLQAEFHEQHGKKVPTVSRPYSFIEFDT 117

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVER 162
            I   +K Y+D+R + NLS +N        I++ ++ ++++R
Sbjct: 118 YIQKTKKSYIDSRARRNLSNINTELQDVQRIMVANIEEVLQR 159

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Danio rerio (taxid: 7955)

>sp|Q5ZJW4|SC22B_CHICK Vesicle-trafficking protein SEC22b OS=Gallus gallus GN=SEC22B PE=2 SV=1

 Score =  114 bits (284), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 101/162 (62%), Gaps = 3/162 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 58

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
            +FHY++E G+ C++ LC++++P+KLAF YL+DLQ EF +     +  ++RPYS ++F++
Sbjct: 59  MAFHYIIEKGV-CYLVLCEAAFPKKLAFAYLEDLQSEFDEQHGKKVPTVSRPYSFIEFDT 117

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVER 162
            I   +K Y+D+R + NL  +N        I++ ++ ++++R
Sbjct: 118 YIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQR 159

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Gallus gallus (taxid: 9031)

>sp|Q4KM74|SC22B_RAT Vesicle-trafficking protein SEC22b OS=Rattus norvegicus GN=Sec22b PE=1 SV=3

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 100/162 (61%), Gaps = 3/162 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 58

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
            +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct: 59  MTFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 117

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVER 162
            I   +K Y+D+R + NL  +N        I++ ++ ++++R
Sbjct: 118 FIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQR 159

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Rattus norvegicus (taxid: 10116)

>sp|Q5RAI9|SC22B_PONAB Vesicle-trafficking protein SEC22b OS=Pongo abelii GN=SEC22B PE=2 SV=3

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 100/162 (61%), Gaps = 3/162 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 58

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
            +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct: 59  MTFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 117

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVER 162
            I   +K Y+D+R + NL  +N        I++ ++ ++++R
Sbjct: 118 FIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQR 159

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Pongo abelii (taxid: 9601)

>sp|O08547|SC22B_MOUSE Vesicle-trafficking protein SEC22b OS=Mus musculus GN=Sec22b PE=1 SV=3

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 100/162 (61%), Gaps = 3/162 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 58

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
            +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct: 59  MTFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 117

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVER 162
            I   +K Y+D+R + NL  +N        I++ ++ ++++R
Sbjct: 118 FIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQR 159

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Mus musculus (taxid: 10090)

>sp|Q6P7L4|SC22B_XENTR Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis GN=sec22b PE=2 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 100/162 (61%), Gaps = 3/162 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQNQAKQLFRKLNEQS--PTRCTLEAGA 58

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
            +FHYL+E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct: 59  MTFHYLIEKGV-CYLVLCEAAFPKKLAFAYLEDLFSEFDEQHGKKVPTVSRPYSFIEFDN 117

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVER 162
            I   +K Y+D+R + NLS +N        I++ ++ +++ R
Sbjct: 118 YIQKTKKSYIDSRARRNLSSVNTELQDVQRIMVANIEEVLLR 159

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Xenopus tropicalis (taxid: 8364)

>sp|O08595|SC22B_CRIGR Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b PE=1 SV=3

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 100/162 (61%), Gaps = 3/162 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLGAGA 58

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
            +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct: 59  MTFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 117

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVER 162
            I   +K Y+D+R + NL  +N        I++ ++ ++++R
Sbjct: 118 FIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQR 159

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Cricetulus griseus (taxid: 10029)

>sp|Q7ZV15|S22BA_DANRE Vesicle-trafficking protein SEC22b-A OS=Danio rerio GN=sec22ba PE=2 SV=1

 Score =  105 bits (261), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 98/162 (60%), Gaps = 3/162 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MV  T++ RV+D LPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct: 1   MVLQTMIVRVADSLPLAASMQEDEQSGRDLQKYQSQAKQLCRKLNEQS--PARCTLEAGK 58

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
             FHY++E G+ C++ LC++ +P+KLAF YL+DL+ EF +   + +  ++RPYS ++F++
Sbjct: 59  MCFHYVIEKGV-CYLALCEAGFPKKLAFAYLEDLEGEFSEQYGAKVPSVSRPYSFIEFDT 117

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVER 162
            I    K Y+D+R + NL  +N+       I++ ++ ++++R
Sbjct: 118 YIQKTIKSYIDSRARRNLGNINSELHDVQRIMVANIEEVLQR 159

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Danio rerio (taxid: 7955)

>sp|O75396|SC22B_HUMAN Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1 SV=4

 Score =  104 bits (259), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 97/162 (59%), Gaps = 3/162 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 58

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
            +FHY++E G+ C + LC++++P+ LAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct: 59  MTFHYIIEQGV-CDLVLCEAAFPKTLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 117

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVER 162
            I   +K Y+D+  + NL  +N        I++ ++ ++++R
Sbjct: 118 FIQKTKKLYIDSCARRNLGSINTELQDVQRIMVANIEEVLQR 159

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
224120032	221	predicted protein [Populus trichocarpa]	0.995	1.0	0.729	7e-93
225470165	226	PREDICTED: 25.3 kDa vesicle transport pr	0.981	0.964	0.716	2e-86
356574483	220	PREDICTED: 25.3 kDa vesicle transport pr	0.990	1.0	0.675	6e-81
356534147	217	PREDICTED: 25.3 kDa vesicle transport pr	0.977	1.0	0.657	3e-76
302143894	179	unnamed protein product [Vitis vinifera]	0.743	0.921	0.755	2e-67
449526437	200	PREDICTED: 25.3 kDa vesicle transport pr	0.738	0.82	0.674	2e-58
449446165	200	PREDICTED: 25.3 kDa vesicle transport pr	0.738	0.82	0.674	4e-58
15242949	214	vesicle transport protein SEC22 [Arabido	0.734	0.761	0.620	3e-51
297796039	213	hypothetical protein ARALYDRAFT_495296 [	0.734	0.765	0.614	7e-50
168025406	219	R-SNARE, SEC22-family [Physcomitrella pa	0.936	0.949	0.4	6e-39

>gi|224120032|ref|XP_002318225.1| predicted protein [Populus trichocarpa] gi|222858898|gb|EEE96445.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (885), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 162/222 (72%), Positives = 192/222 (86%), Gaps = 1/222 (0%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MVK+TIVGRV DGLPLA+GPRY+N+E+D+F  YKQQ EFILKEISRGAL PS MTIR+DH
Sbjct: 1   MVKITIVGRVIDGLPLAQGPRYVNEENDNFLCYKQQGEFILKEISRGALIPSMMTIRIDH 60

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
           HS +YL+ NG  CF+TLCDSSYPRKLAFHYLQDLQKEF++ D SL++KITRPYS VKF+ 
Sbjct: 61  HSLNYLIGNG-ACFMTLCDSSYPRKLAFHYLQDLQKEFERLDNSLVEKITRPYSFVKFDG 119

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHV 180
           +IG+IRKQY+DTRTQANLSKLNANR +DL+I+ EH+ +I++RKR SEISE +   T +  
Sbjct: 120 VIGSIRKQYIDTRTQANLSKLNANRKKDLEIITEHISEILQRKRNSEISERLPATTPRTA 179

Query: 181 SSIWGSPRLEVIALKWTPIAIIVAVAAILLWANLVLTDEFIV 222
           S +WGSP LEVIALKWTPI  IVAVAAILLWA+LVLTD FI+
Sbjct: 180 SPVWGSPLLEVIALKWTPITTIVAVAAILLWASLVLTDNFII 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470165|ref|XP_002267897.1| PREDICTED: 25.3 kDa vesicle transport protein-like [Vitis vinifera]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 159/222 (71%), Positives = 191/222 (86%), Gaps = 4/222 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLN-QEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVD 59
           MVK+TIVGRVSDGLPLA+G RY N +E+++F  YKQQAEFILKEISRGAL+PSKMTI +D
Sbjct: 1   MVKLTIVGRVSDGLPLAQGLRYQNDEENENFLCYKQQAEFILKEISRGALSPSKMTIHID 60

Query: 60  H-HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKF 118
           H H F+YL+ENG  CFITLCDSSYPRKLAFHYLQDLQKEF+KFDI L++KIT+PYS V+F
Sbjct: 61  HYHCFNYLVENG-HCFITLCDSSYPRKLAFHYLQDLQKEFEKFDIGLMEKITKPYSFVRF 119

Query: 119 ESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRK 178
           + IIGNIRKQY+DTRTQANLSKLNANRGQDLDI+ +HM +I+++  +SEISE  ++ T +
Sbjct: 120 DGIIGNIRKQYIDTRTQANLSKLNANRGQDLDIIAKHMSEIIQKGPKSEISER-MSVTPR 178

Query: 179 HVSSIWGSPRLEVIALKWTPIAIIVAVAAILLWANLVLTDEF 220
            VS IW SP L+VIALKWT I +IV VA ILLW +L+LT+ F
Sbjct: 179 TVSPIWSSPFLKVIALKWTAITLIVVVAVILLWGSLILTENF 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574483|ref|XP_003555376.1| PREDICTED: 25.3 kDa vesicle transport protein-like [Glycine max]

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 150/222 (67%), Positives = 179/222 (80%), Gaps = 2/222 (0%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MVK+TIVGRVSDGLPLA+G RY+N+E+   S Y+QQAEFIL+E SRGAL   KMTI +D+
Sbjct: 1   MVKVTIVGRVSDGLPLAQGLRYMNEEYGYLSCYRQQAEFILREFSRGALTAPKMTIHIDN 60

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
             F+YL+ENG+  FI LC+S+YPRKLAFHYLQD+QKEF+KFD +LI KITRPYS VKF+ 
Sbjct: 61  FCFNYLVENGV-VFIVLCESTYPRKLAFHYLQDIQKEFEKFDKTLIGKITRPYSFVKFDG 119

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHV 180
           II NI +QY+DTRTQANLSKLNANR QDLDI  E +Y+I+ERKR SE     L  T +  
Sbjct: 120 IIANISRQYIDTRTQANLSKLNANRKQDLDIATEDIYKILERKRNSETMRR-LPVTPQPE 178

Query: 181 SSIWGSPRLEVIALKWTPIAIIVAVAAILLWANLVLTDEFIV 222
           S+IW SP+LEVIALKWTPI IIV  +  LLWA+L LTD+FIV
Sbjct: 179 STIWCSPQLEVIALKWTPIMIIVITSMALLWASLALTDDFIV 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534147|ref|XP_003535619.1| PREDICTED: 25.3 kDa vesicle transport protein-like [Glycine max]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 146/222 (65%), Positives = 173/222 (77%), Gaps = 5/222 (2%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MVK+TIVGRVSDGLPLA+G RY+N+E+   S Y+QQAEFIL+E SRGAL  SKMTI +D+
Sbjct: 1   MVKVTIVGRVSDGLPLAQGLRYMNEENGYLSCYRQQAEFILQEFSRGALTASKMTIHIDN 60

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
             F+YL+ENG+  FI LC+ +YPRKLAFHYLQD+QKEF+KFD +LI KITRPYS VKF+ 
Sbjct: 61  FCFNYLVENGV-VFIVLCEFTYPRKLAFHYLQDIQKEFEKFDKTLIGKITRPYSFVKFDG 119

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHV 180
           II NI +QY+DTRTQANLSKLNANR QDLDI  E +Y I+ERKR SE        T    
Sbjct: 120 IIANISRQYIDTRTQANLSKLNANRKQDLDIATEDIYNILERKRNSETMRSS-PVTLLPE 178

Query: 181 SSIWGSPRLEVIALKWTPIAIIVAVAAILLWANLVLTDEFIV 222
           S+IW SPRLEVIALKWTP+ IIV  +  LLWA+L    +FIV
Sbjct: 179 STIWCSPRLEVIALKWTPVMIIVITSMALLWASLA---DFIV 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143894|emb|CBI22755.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 151/168 (89%), Gaps = 3/168 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLN-QEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVD 59
           MVK+TIVGRVSDGLPLA+G RY N +E+++F  YKQQAEFILKEISRGAL+PSKMTI +D
Sbjct: 1   MVKLTIVGRVSDGLPLAQGLRYQNDEENENFLCYKQQAEFILKEISRGALSPSKMTIHID 60

Query: 60  H-HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKF 118
           H H F+YL+ENG  CFITLCDSSYPRKLAFHYLQDLQKEF+KFDI L++KIT+PYS V+F
Sbjct: 61  HYHCFNYLVENG-HCFITLCDSSYPRKLAFHYLQDLQKEFEKFDIGLMEKITKPYSFVRF 119

Query: 119 ESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQS 166
           + IIGNIRKQY+DTRTQANLSKLNANRGQDLDI+ +HM +I+++  +S
Sbjct: 120 DGIIGNIRKQYIDTRTQANLSKLNANRGQDLDIIAKHMSEIIQKGPKS 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526437|ref|XP_004170220.1| PREDICTED: 25.3 kDa vesicle transport protein-like [Cucumis sativus]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/166 (67%), Positives = 140/166 (84%), Gaps = 2/166 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MVK+T+VGRV DGLP+A+G RY+N+E+D    YK+QAEFILKEISRG L+P KM I + H
Sbjct: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
           HSF YL+ENG+ C++TLCDSSYPRKLA HYLQDLQKEF KFD +LI+K+ +PYS +KF+S
Sbjct: 61  HSFIYLVENGV-CYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDS 119

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQ-DLDIVIEHMYQIVERKRQ 165
           II N+RKQY+DTRTQANLSKLNANR Q D DI+   + +I+ER+R+
Sbjct: 120 IISNVRKQYIDTRTQANLSKLNANRRQPDPDILTCSLSEILERRRK 165

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446165|ref|XP_004140842.1| PREDICTED: 25.3 kDa vesicle transport protein-like [Cucumis sativus]

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 112/166 (67%), Positives = 139/166 (83%), Gaps = 2/166 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MVK+T+VGRV DGLP+A+G RY+N+E+D    YK+QAEFILKEISRG L+P KM I + H
Sbjct: 1   MVKLTMVGRVRDGLPIAQGIRYVNEENDDVFGYKKQAEFILKEISRGTLSPPKMVILMHH 60

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
           HSF YL+ENG+ C++TLCDSSYPRKLA HYLQDLQKEF KFD +LI+K+ +PYS +KF+S
Sbjct: 61  HSFIYLVENGV-CYMTLCDSSYPRKLAIHYLQDLQKEFGKFDDALINKLIKPYSFLKFDS 119

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQ-DLDIVIEHMYQIVERKRQ 165
           II N+RKQY+DTRTQANLSKLNANR Q D DI    + +I+ER+R+
Sbjct: 120 IISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRK 165

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242949|ref|NP_200040.1| vesicle transport protein SEC22 [Arabidopsis thaliana] gi|8885540|dbj|BAA97470.1| unnamed protein product [Arabidopsis thaliana] gi|332008811|gb|AED96194.1| vesicle transport protein SEC22 [Arabidopsis thaliana]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 103/166 (62%), Positives = 131/166 (78%), Gaps = 3/166 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHD-SFSFYKQQAEFILKEISRGALAPSKMTIRVD 59
           MVK+TIVGRV DGLPLA+   Y+NQE + SF  YKQQAEF+LK++S+ +L   KMTI +D
Sbjct: 1   MVKLTIVGRVEDGLPLAQDQTYVNQEDNTSFLLYKQQAEFLLKQVSKDSLLHPKMTILLD 60

Query: 60  HHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFD-ISLIDKITRPYSCVKF 118
           HHSFH+L+E  I C+I L DSSYPRKL F+YLQ+L KE  K D  +LI KI++PYS ++F
Sbjct: 61  HHSFHFLVEKKI-CYIALSDSSYPRKLLFNYLQNLNKELDKLDEKALIQKISKPYSFIRF 119

Query: 119 ESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKR 164
             IIG IRKQY+DTRTQANLSKLNA R Q+LD+V EH+  I++R++
Sbjct: 120 GKIIGRIRKQYIDTRTQANLSKLNALRKQELDVVTEHLNDIIQRQQ 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796039|ref|XP_002865904.1| hypothetical protein ARALYDRAFT_495296 [Arabidopsis lyrata subsp. lyrata] gi|297311739|gb|EFH42163.1| hypothetical protein ARALYDRAFT_495296 [Arabidopsis lyrata subsp. lyrata]

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 131/166 (78%), Gaps = 3/166 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHD-SFSFYKQQAEFILKEISRGALAPSKMTIRVD 59
           MVK+TIVGRV DGLPLA+   Y+NQ+ + SF  YK+QAEF+LK+IS+ +L   KMTI +D
Sbjct: 1   MVKLTIVGRVEDGLPLAQDQTYVNQQDNASFLLYKKQAEFLLKQISKDSLLHPKMTILLD 60

Query: 60  HHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFD-ISLIDKITRPYSCVKF 118
           HHSFH+L+E  I C I L DSSYPRKL FHYLQDL+KE  + D  +LI KI++PYS V+F
Sbjct: 61  HHSFHFLVEKKICC-IALSDSSYPRKLLFHYLQDLRKELDQPDETALIQKISKPYSFVRF 119

Query: 119 ESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKR 164
             IIG IRKQY+DTRTQANLSKLN++R Q+L++V EH   I++R++
Sbjct: 120 GKIIGRIRKQYMDTRTQANLSKLNSSRKQELNVVTEHFNDIIQRRQ 165

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168025406|ref|XP_001765225.1| R-SNARE, SEC22-family [Physcomitrella patens subsp. patens] gi|168025408|ref|XP_001765226.1| R-SNARE, SEC22-family [Physcomitrella patens subsp. patens] gi|162683544|gb|EDQ69953.1| R-SNARE, SEC22-family [Physcomitrella patens subsp. patens] gi|162683545|gb|EDQ69954.1| R-SNARE, SEC22-family [Physcomitrella patens subsp. patens]

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 138/215 (64%), Gaps = 7/215 (3%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MVK+T++ RV+DGLPLA G     +E +   FYKQQA+ + KE+SR     S+M++    
Sbjct: 1   MVKLTLIARVTDGLPLAEGLDD-GREQNDMEFYKQQAKQLCKELSRRQHEASRMSVETGP 59

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
           + FHY++E G+ C++TLC+ SYP+KLA+ YL++LQ+EF+K + S I+ + RPY+ +KF++
Sbjct: 60  YFFHYIIEGGV-CYLTLCERSYPKKLAYQYLEELQREFEKVNRSQIETVARPYAFIKFDT 118

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIV---ERKRQ-SEISEEILTAT 176
            I   RK Y DTRTQ NLSKLN +  +   I+  ++ +++   +R  Q S++S  + T +
Sbjct: 119 FIQKTRKLYQDTRTQRNLSKLNDDLYEVTQIMTRNIQEVLGVGDRLDQVSQMSSRLATES 178

Query: 177 RKHVSSIWGSPRLEVIALKWTPIAIIVAVAAILLW 211
           + +        R  +I  KW P+ I++ V  +LLW
Sbjct: 179 KVYSDKAKDLNRQALIR-KWAPVGIVIGVVLLLLW 212

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2145131	214	AT5G52270 "AT5G52270" [Arabido	0.734	0.761	0.620	5.8e-50
TAIR|locus:2008960	218	SEC22 "AT1G11890" [Arabidopsis	0.878	0.894	0.381	3.7e-32
UNIPROTKB|Q5ZJW4	215	SEC22B "Vesicle-trafficking pr	0.711	0.734	0.331	2.9e-25
MGI|MGI:1338759	215	Sec22b "SEC22 vesicle traffick	0.711	0.734	0.325	7.6e-25
RGD|1309988	215	Sec22b "SEC22 vesicle traffick	0.711	0.734	0.325	7.6e-25
UNIPROTKB|F1MLE8	251	SEC22B "Uncharacterized protei	0.711	0.629	0.325	9.7e-25
UNIPROTKB|E2R8Y3	247	SEC22B "Uncharacterized protei	0.711	0.639	0.325	9.7e-25
UNIPROTKB|F1SB09	215	LOC100739197 "Uncharacterized	0.711	0.734	0.325	9.7e-25
UNIPROTKB|I3LB79	218	LOC100739197 "Uncharacterized	0.711	0.724	0.325	9.7e-25
ZFIN|ZDB-GENE-030131-5488	219	sec22bb "SEC22 vesicle traffic	0.720	0.730	0.339	1.2e-24

TAIR|locus:2145131 AT5G52270 "AT5G52270" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 103/166 (62%), Positives = 131/166 (78%)

Query:     1 MVKMTIVGRVSDGLPLARGPRYLNQEHD-SFSFYKQQAEFILKEISRGALAPSKMTIRVD 59
             MVK+TIVGRV DGLPLA+   Y+NQE + SF  YKQQAEF+LK++S+ +L   KMTI +D
Sbjct:     1 MVKLTIVGRVEDGLPLAQDQTYVNQEDNTSFLLYKQQAEFLLKQVSKDSLLHPKMTILLD 60

Query:    60 HHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDI-SLIDKITRPYSCVKF 118
             HHSFH+L+E  I C+I L DSSYPRKL F+YLQ+L KE  K D  +LI KI++PYS ++F
Sbjct:    61 HHSFHFLVEKKI-CYIALSDSSYPRKLLFNYLQNLNKELDKLDEKALIQKISKPYSFIRF 119

Query:   119 ESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKR 164
               IIG IRKQY+DTRTQANLSKLNA R Q+LD+V EH+  I++R++
Sbjct:   120 GKIIGRIRKQYIDTRTQANLSKLNALRKQELDVVTEHLNDIIQRQQ 165

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

TAIR|locus:2008960 SEC22 "AT1G11890" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 77/202 (38%), Positives = 121/202 (59%)

Query:     1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
             MVKMT++ RV+DGLPLA G        DS   YKQQ + + K +SRG    S+M++    
Sbjct:     1 MVKMTLIARVTDGLPLAEGLDDGRDLPDS-DMYKQQVKALFKNLSRGQNDASRMSVETGP 59

Query:    61 HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
             + FHY++E  + C++T+CD SYP+KLAF YL+DL+ EF++ +   I+   RPY+ +KF++
Sbjct:    60 YVFHYIIEGRV-CYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETAARPYAFIKFDT 118

Query:   121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIV---ERKRQ-SEISEEILTAT 176
              I   +K Y DTRTQ N++KLN    +   I+  ++ +++   E+  Q SE+S  + + +
Sbjct:   119 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSES 178

Query:   177 RKHVSSIWGSPRLEVIALKWTP 198
             R +        R  +I  KW P
Sbjct:   179 RIYADKAKDLNRQALIR-KWAP 199

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|Q5ZJW4 SEC22B "Vesicle-trafficking protein SEC22b" [Gallus gallus (taxid:9031)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 54/163 (33%), Positives = 104/163 (63%)

Query:     1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
             MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct:     1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 58

Query:    61 HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
              +FHY++E G+ C++ LC++++P+KLAF YL+DLQ EF +     +  ++RPYS ++F++
Sbjct:    59 MAFHYIIEKGV-CYLVLCEAAFPKKLAFAYLEDLQSEFDEQHGKKVPTVSRPYSFIEFDT 117

Query:   121 IIGNIRKQYVDTRTQANLSKLNANRGQDLD-IVIEHMYQIVER 162
              I   +K Y+D+R + NL  +N    QD+  I++ ++ ++++R
Sbjct:   118 YIQKTKKLYIDSRARRNLGSINTEL-QDVQRIMVANIEEVLQR 159

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

MGI|MGI:1338759 Sec22b "SEC22 vesicle trafficking protein homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 53/163 (32%), Positives = 103/163 (63%)

Query:     1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
             MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct:     1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 58

Query:    61 HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
              +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct:    59 MTFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 117

Query:   121 IIGNIRKQYVDTRTQANLSKLNANRGQDLD-IVIEHMYQIVER 162
              I   +K Y+D+R + NL  +N    QD+  I++ ++ ++++R
Sbjct:   118 FIQKTKKLYIDSRARRNLGSINTEL-QDVQRIMVANIEEVLQR 159

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IDA

RGD|1309988 Sec22b "SEC22 vesicle trafficking protein homolog B (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 53/163 (32%), Positives = 103/163 (63%)

Query:     1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
             MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct:     1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 58

Query:    61 HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
              +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct:    59 MTFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 117

Query:   121 IIGNIRKQYVDTRTQANLSKLNANRGQDLD-IVIEHMYQIVER 162
              I   +K Y+D+R + NL  +N    QD+  I++ ++ ++++R
Sbjct:   118 FIQKTKKLYIDSRARRNLGSINTEL-QDVQRIMVANIEEVLQR 159

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA;ISO

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

UNIPROTKB|F1MLE8 SEC22B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 53/163 (32%), Positives = 103/163 (63%)

Query:     1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
             MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct:     1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 58

Query:    61 HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
              +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct:    59 MTFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 117

Query:   121 IIGNIRKQYVDTRTQANLSKLNANRGQDLD-IVIEHMYQIVER 162
              I   +K Y+D+R + NL  +N    QD+  I++ ++ ++++R
Sbjct:   118 YIQKTKKLYIDSRARRNLGSINTEL-QDVQRIMVANIEEVLQR 159

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R8Y3 SEC22B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 53/163 (32%), Positives = 103/163 (63%)

Query:     1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
             MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct:     1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 58

Query:    61 HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
              +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct:    59 MTFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 117

Query:   121 IIGNIRKQYVDTRTQANLSKLNANRGQDLD-IVIEHMYQIVER 162
              I   +K Y+D+R + NL  +N    QD+  I++ ++ ++++R
Sbjct:   118 YIQKTKKLYIDSRARRNLGSINTEL-QDVQRIMVANIEEVLQR 159

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SB09 LOC100739197 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 53/163 (32%), Positives = 103/163 (63%)

Query:     1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
             MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct:     1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 58

Query:    61 HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
              +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct:    59 MTFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 117

Query:   121 IIGNIRKQYVDTRTQANLSKLNANRGQDLD-IVIEHMYQIVER 162
              I   +K Y+D+R + NL  +N    QD+  I++ ++ ++++R
Sbjct:   118 YIQKTKKLYIDSRARRNLGSINTEL-QDVQRIMVANIEEVLQR 159

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|I3LB79 LOC100739197 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 53/163 (32%), Positives = 103/163 (63%)

Query:     1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
             MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct:     4 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 61

Query:    61 HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
              +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct:    62 MTFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 120

Query:   121 IIGNIRKQYVDTRTQANLSKLNANRGQDLD-IVIEHMYQIVER 162
              I   +K Y+D+R + NL  +N    QD+  I++ ++ ++++R
Sbjct:   121 YIQKTKKLYIDSRARRNLGSINTEL-QDVQRIMVANIEEVLQR 162

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-5488 sec22bb "SEC22 vesicle trafficking protein homolog B (S. cerevisiae), b" [Danio rerio (taxid:7955)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 56/165 (33%), Positives = 102/165 (61%)

Query:     1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISR--GALAPSKMTIRV 58
             MV +T++ R++DGLPLA   +   Q  +      QQ +   K++ R     +P++ T+  
Sbjct:     1 MVLLTMIARLADGLPLAASMQEDEQGSEKMGRDLQQYQSQAKQLFRKLNEQSPNRCTLEA 60

Query:    59 DHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKF 118
                SFHY++E G+ C++ LC++ +P+KLAF YL+DLQ EF +     +  ++RPYS ++F
Sbjct:    61 GSMSFHYVIEKGV-CYLVLCEAGFPKKLAFAYLEDLQAEFHEQHGKKVPTVSRPYSFIEF 119

Query:   119 ESIIGNIRKQYVDTRTQANLSKLNANRGQDLD-IVIEHMYQIVER 162
             ++ I   +K Y+D+R + NLS +N    QD+  I++ ++ ++++R
Sbjct:   120 DTYIQKTKKSYIDSRARRNLSNINTEL-QDVQRIMVANIEEVLQR 163

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y7L0	SEC22_SCHPO	No assigned EC number	0.3055	0.9234	0.9534	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00121111 hypothetical protein (221 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
pfam13774	82	pfam13774, Longin, Regulated-SNARE-like domain	9e-20
COG5143	190	COG5143, SNC1, Synaptobrevin/VAMP-like protein [In	8e-06

>gnl|CDD|222370 pfam13774, Longin, Regulated-SNARE-like domain

 Score = 79.5 bits (197), Expect = 9e-20
 Identities = 25/87 (28%), Positives = 51/87 (58%), Gaps = 6/87 (6%)

Query: 36  QAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQ 95
            A+ IL+++        + +    +++FHYL+E+G+ C++ + D  YPR+LAF +L++++
Sbjct: 1   VAKTILEKLPPN---SPRQSYEEGNYTFHYLVEDGL-CYLCIADKEYPRRLAFAFLEEIK 56

Query: 96  KEFQ-KFDISLIDKITRPYSCVKFESI 121
            EF  K+  S       PY+  +F++ 
Sbjct: 57  DEFLKKYGGS-QAATASPYAFPEFDTF 82

Longin is one of the approximately 26 components required for transporting proteins from the ER to the plasma membrane, via the Golgi apparatus. It is necessary for the steps of the transfer from the ER to the Golgi complex. Longins are the only R-SNAREs that are common to all eukaryotes, and they are characterized by a conserved N-terminal domain with a profilin-like fold called a longin domain. Length = 82

>gnl|CDD|227472 COG5143, SNC1, Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 7/122 (5%)

Query: 24  NQEHDSFSFY-KQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSSY 82
            +   SFSF+ + + + +L+ +S+   + S+ +I    + FHYL  +    ++ + D  Y
Sbjct: 20  AESLSSFSFFHRSKVKEVLRFLSK--TSASRASIESGDYFFHYLKMSSGIVYVPISDKEY 77

Query: 83  PRKLAFHYLQDLQKEFQK-FDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKL 141
           P KLA+ YL  +  EF K   +  +   T     V  + +I    K Y D   Q  L +L
Sbjct: 78  PNKLAYGYLNSIATEFLKSSALEQLIDDTVGIMRVNIDKVIE---KGYRDPSIQDKLDQL 134

Query: 142 NA 143
             
Sbjct: 135 QQ 136

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	100.0
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	100.0
KOG0861	198	consensus SNARE protein YKT6, synaptobrevin/VAMP s	99.97
COG5143	190	SNC1 Synaptobrevin/VAMP-like protein [Intracellula	99.93
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	99.91
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	99.88
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	99.8
COG5143	190	SNC1 Synaptobrevin/VAMP-like protein [Intracellula	96.93
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	96.34
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	95.92
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	95.64
PF04086	279	SRP-alpha_N: Signal recognition particle, alpha su	94.72
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	94.45
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	92.47
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	91.74
PF09426	141	Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro	91.55
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	90.59
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	89.23
KOG0781	587	consensus Signal recognition particle receptor, al	87.93
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	83.75
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	80.29

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-56  Score=349.72  Aligned_cols=203  Identities=20%  Similarity=0.319  Sum_probs=184.3

Q ss_pred             cEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCCC
Q 027525            2 VKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSS   81 (222)
Q Consensus         2 I~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~   81 (222)
                      |+|+.|||  |.+|||||++    .+|||.   .++..+|+++|+++  ++|.+|..|+|+|||+++|| ++|+|++|++
T Consensus         3 iiYs~VAR--GTvvLaeft~----~~gNf~---sva~qiL~klp~~~--n~k~tYs~d~y~Fh~l~~dg-~tylcvadds   70 (217)
T KOG0859|consen    3 IIYSFVAR--GTVILAEFTE----FSGNFS---SIAAQILQKLPSSS--NSKFTYSCDGYTFHYLVEDG-LTYLCVADDS   70 (217)
T ss_pred             eeEEEEec--ceEEEEeeee----ccCCHH---HHHHHHHHhCCCCC--CCceEEecCCeEEEEEEeCC-eEEEEEEecc
Confidence            79999999  9999999998    699999   69999999999986  77999999999999999999 9999999999


Q ss_pred             CChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccc-cchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHHHH
Q 027525           82 YPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCV-KFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQI  159 (222)
Q Consensus        82 ~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~i  159 (222)
                      .++++||.||++|+++| +.|+..  ...+.+|+++ +|++.|++.|+.|.+.++.|++++++.||+|+|+||.+||||+
T Consensus        71 ~gR~ipfaFLe~Ik~~F~k~YG~~--a~ta~AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~evk~vM~eNIekv  148 (217)
T KOG0859|consen   71 AGRQIPFAFLERIKEDFKKRYGGG--AHTAVAYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTEVKGVMMENIEKV  148 (217)
T ss_pred             ccccccHHHHHHHHHHHHHHhccc--hhHHHHhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 999863  4456889998 9999999999999766668999999999999999999999999


Q ss_pred             HHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH----hhhHHHHHHHHHHHHHHHHHhcCC
Q 027525          160 VERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL----KWTPIAIIVAVAAILLWANLVLTD  218 (222)
Q Consensus       160 l~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w----K~~~i~~~~~~~~~~i~~~~~~~~  218 (222)
                      |+|||+||.|+|||++|+.++..| +++++++|+||    |++.+++.++++++.|-..++|||
T Consensus       149 ldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG  212 (217)
T KOG0859|consen  149 LDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGG  212 (217)
T ss_pred             HhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccC
Confidence            999999999999999999999999 99999999999    666666555555554444457877

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-45  Score=292.86  Aligned_cols=209  Identities=31%  Similarity=0.608  Sum_probs=188.4

Q ss_pred             CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525            1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS   80 (222)
Q Consensus         1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~   80 (222)
                      ||++++|+|+.||+|||..++++-+.++++.++|+.++.+.+++.+.+  ++++|.+.|.|+|||++++| +||+|+||.
T Consensus         1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s--~~r~Sietg~f~fHfli~~~-Vcylvicd~   77 (216)
T KOG0862|consen    1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQS--PTRCSIETGPFVFHFLIESG-VCYLVICDK   77 (216)
T ss_pred             CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCC--CcccccccCCeEEEEEecCC-EEEEEEecC
Confidence            899999999999999999988522244556899999999999999987  89999999999999999999 999999999


Q ss_pred             CCChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHHHH
Q 027525           81 SYPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQI  159 (222)
Q Consensus        81 ~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~i  159 (222)
                      .||+++||+||+++.++| +.|+........|||+|.+|+++|++..++|||+++.+++.++.+++.+|+.+|.+||+.+
T Consensus        78 ~yP~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~FieFD~~IQk~Kk~ynd~r~~~n~~~~n~el~~v~~im~~niedv  157 (216)
T KOG0862|consen   78 SYPRKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAFIEFDTFIQKTKKRYNDTRSQRNLLKLNQELQDVQRIMVENLEDV  157 (216)
T ss_pred             CCcHHHHHHHHHHHHHHHHHhcccccCCccCCCeeEEehhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            999999999999999999 9998755555789999999999999999999999999999999999999999999999999


Q ss_pred             HHchhchHHHHHHHHHHHhhcccc-CCchHHHHHH-H-hhhHHHHHHHHHHHHHHHHH
Q 027525          160 VERKRQSEISEEILTATRKHVSSI-WGSPRLEVIA-L-KWTPIAIIVAVAAILLWANL  214 (222)
Q Consensus       160 l~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~-w-K~~~i~~~~~~~~~~i~~~~  214 (222)
                      +.|||.|+.|..++.+|+..|+.. ++|+.++++. | ||+.+...  ..++++|++|
T Consensus       158 l~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~--~~~l~f~~~f  213 (216)
T KOG0862|consen  158 LQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVF--FVLLLFYVRF  213 (216)
T ss_pred             HhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            999999999999999999999999 9999999977 5 88843333  3334456666

>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.8e-31  Score=203.98  Aligned_cols=182  Identities=13%  Similarity=0.163  Sum_probs=146.0

Q ss_pred             cEEEEEEEe--cCCeeeeeeccCCC---CCCCChhH-HHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEe-eCCcEEE
Q 027525            2 VKMTIVGRV--SDGLPLARGPRYLN---QEHDSFSF-YKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLM-ENGIGCF   74 (222)
Q Consensus         2 I~y~~IaR~--~d~~iLae~~~~~~---~~~~~~~~-~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~-~~~~~~~   74 (222)
                      |.+..|-+.  ++..+|+..++.++   =..++..| +--+++.+.++.+|    .+|+++++++|.+|... .+| +++
T Consensus         3 i~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~----g~rqsvk~~~Y~~h~yvrndg-L~~   77 (198)
T KOG0861|consen    3 IYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGP----GQRQSVKHEEYLVHVYVRNDG-LCG   77 (198)
T ss_pred             eEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCc----ccccccccceeEEEEEEecCC-eeE
Confidence            344455554  46677777665421   02333332 22568999999998    58999999999999655 458 999


Q ss_pred             EEEeCCCCChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHH
Q 027525           75 ITLCDSSYPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVI  153 (222)
Q Consensus        75 ~cvtd~~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~  153 (222)
                      ++++|.+||.|+||.+|.++.++| ...+.. .|... ..+-..| |.|+....+|+||.+.|+|.++|+++||||.||+
T Consensus        78 V~~~D~eYP~rvA~tLL~kvld~~~~k~~~~-~W~~~-~~~~~~~-~~L~~~l~kyqdP~ead~l~kvQ~EldETKiiLh  154 (198)
T KOG0861|consen   78 VLIADDEYPVRVAFTLLNKVLDEFTTKVPAT-QWPVG-ETADLSY-PYLDTLLSKYQDPAEADPLLKVQNELDETKIILH  154 (198)
T ss_pred             EEEecCcCchhHHHHHHHHHHHHHhhcCccc-ccCcC-CCcCCCc-hhHHHHHHHhcChhhhChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 665542 34332 2222355 7899999999999999999999999999999999


Q ss_pred             HhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHH
Q 027525          154 EHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEV  191 (222)
Q Consensus       154 ~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r  191 (222)
                      ++|+.+|+|||+||+|++||++|+.+|+.| ++|+|.++
T Consensus       155 kTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~Ns  193 (198)
T KOG0861|consen  155 KTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNS  193 (198)
T ss_pred             HHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999 99998663

>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

Probab=99.93  E-value=1.5e-25  Score=177.19  Aligned_cols=183  Identities=20%  Similarity=0.298  Sum_probs=148.6

Q ss_pred             EEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEee-CCcEEEEEEeCCCC
Q 027525            4 MTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLME-NGIGCFITLCDSSY   82 (222)
Q Consensus         4 y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~-~~~~~~~cvtd~~~   82 (222)
                      ++.+-|. ++.+++..++.....+..|- -+..+..+|.++.|..  .++.+++.++|.|||.-. +| ++|+|+|+.+|
T Consensus         3 s~~~~~~-~~~~~~~~~~~~s~~~~~ff-~~~~v~~~l~~~~~~~--a~~~~ies~~~~~~~~~~s~g-i~y~~~~~~e~   77 (190)
T COG5143           3 SISLFRV-KGEPLRTLSDAESLSSFSFF-HRSKVKEVLRFLSKTS--ASRASIESGDYFFHYLKMSSG-IVYVPISDKEY   77 (190)
T ss_pred             eEEEEee-cCCcceeeccccccCccccc-ccchHHHHHHHhcccc--cchhccccCceEEEEEecCCC-ceeEEeccccc
Confidence            4455564 56666666554211222332 2466788888877754  568889999999998765 48 99999999999


Q ss_pred             ChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHHHHHH
Q 027525           83 PRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVE  161 (222)
Q Consensus        83 p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~il~  161 (222)
                      |+++|++.++++..+| .++.......+..++.+.+|++++++   .|++|...|++.+++.++++||.+|.+||+++|+
T Consensus        78 p~~la~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~d~~~e~---~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~  154 (190)
T COG5143          78 PNKLAYGYLNSIATEFLKSSALEQLIDDTVGIMRVNIDKVIEK---GYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLY  154 (190)
T ss_pred             chhhhhHHHHhhccHhhhhhhHhhcccCccchhhhhHHHHHHh---hcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999 77765444444456666688888887   3999999999999999999999999999999999


Q ss_pred             chhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525          162 RKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL  194 (222)
Q Consensus       162 Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w  194 (222)
                      |||+|+.|+++|+.|...|+.| +.|++.+..+|
T Consensus       155 R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~~  188 (190)
T COG5143         155 RDEKLDLLVDLSSILLLSSKMFPKSAKKSNLCCL  188 (190)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence            9999999999999999999999 99999998886

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.3e-24  Score=158.26  Aligned_cols=80  Identities=15%  Similarity=0.177  Sum_probs=70.4

Q ss_pred             hhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH----hhhHHHHHHHHHHH-
Q 027525          135 QANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL----KWTPIAIIVAVAAI-  208 (222)
Q Consensus       135 ~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w----K~~~i~~~~~~~~~-  208 (222)
                      ++++.++|+||++|++||++||+|+|||||||++|++||+.|+..|..| ++|.++||+||    ||..++++++++++ 
T Consensus        28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~  107 (116)
T KOG0860|consen   28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV  107 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999 99999999998    77777776555444 


Q ss_pred             HHHHHH
Q 027525          209 LLWANL  214 (222)
Q Consensus       209 ~i~~~~  214 (222)
                      ++.+.+
T Consensus       108 iiii~~  113 (116)
T KOG0860|consen  108 VIIIYI  113 (116)
T ss_pred             HHHHHH
Confidence            333333

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=99.88  E-value=8.2e-23  Score=145.96  Aligned_cols=83  Identities=13%  Similarity=0.217  Sum_probs=68.0

Q ss_pred             hhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH--hhhHHHHHHHHHHHHHH
Q 027525          135 QANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL--KWTPIAIIVAVAAILLW  211 (222)
Q Consensus       135 ~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w--K~~~i~~~~~~~~~~i~  211 (222)
                      +|++.++++++++|+++|.+||+++++|||+||+|+++|++|+.+|..| ++|++++|+||  +++..++++++++++++
T Consensus         2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~   81 (89)
T PF00957_consen    2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL   81 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence            4899999999999999999999999999999999999999999999999 99999999997  44444444444444444


Q ss_pred             HHH--hcC
Q 027525          212 ANL--VLT  217 (222)
Q Consensus       212 ~~~--~~~  217 (222)
                      +.+  +||
T Consensus        82 ~i~~~~~g   89 (89)
T PF00957_consen   82 IIIIVICG   89 (89)
T ss_dssp             HHHHTT--
T ss_pred             HHHHHHhC
Confidence            433  555

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=99.80  E-value=3.7e-19  Score=125.36  Aligned_cols=81  Identities=38%  Similarity=0.706  Sum_probs=69.2

Q ss_pred             HHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCCCCChHHHHHHHHHHHHHH-hcchhhhhcccCCCcc
Q 027525           36 QAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYS  114 (222)
Q Consensus        36 ~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~  114 (222)
                      +|+.||++++++.  ++|.+++.++|.||+++++| ++|+|+||++||+++||.||++|+++| ++|+...+. .+.||+
T Consensus         1 ~a~~il~~i~~~~--~~k~s~~~~~~~fh~~~~~~-i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~-~a~~~~   76 (83)
T PF13774_consen    1 QARKILKRIPPNG--NSKMSYESGNYVFHYLVEDG-IAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIK-SASPYS   76 (83)
T ss_dssp             HHHHHHHTS-TTS--ESEEEEEETTEEEEEEEETT-EEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTT-TSTTTT
T ss_pred             CHHHHHHhcCCCC--CCeEEEEECCEEEEEEEcCC-eEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhc-ccCCcc
Confidence            5899999999752  48999999999999999999 999999999999999999999999999 999843343 345898


Q ss_pred             cccchH
Q 027525          115 CVKFES  120 (222)
Q Consensus       115 ~~~f~~  120 (222)
                      +.+|++
T Consensus        77 ~~~F~~   82 (83)
T PF13774_consen   77 FKEFDS   82 (83)
T ss_dssp             THHHHH
T ss_pred             hhhcCC
Confidence            888875

...

>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

Probab=96.93  E-value=0.0016  Score=52.16  Aligned_cols=70  Identities=10%  Similarity=0.083  Sum_probs=61.6

Q ss_pred             hHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH----hhhHHHHHHHHH
Q 027525          137 NLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL----KWTPIAIIVAVA  206 (222)
Q Consensus       137 kl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w----K~~~i~~~~~~~  206 (222)
                      +...++...++++.+|..|+|+.++||++.....|+.++|+.+++.| +-..+...+||    |+-.++..+..+
T Consensus        95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L  169 (190)
T COG5143          95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSIL  169 (190)
T ss_pred             hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999 88888888887    777777654443

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.34  E-value=0.0093  Score=51.50  Aligned_cols=79  Identities=13%  Similarity=0.160  Sum_probs=54.8

Q ss_pred             hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHH---hhcccc-CCchHHHHHHHhhhHHHHHHHHHHHHHH
Q 027525          136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATR---KHVSSI-WGSPRLEVIALKWTPIAIIVAVAAILLW  211 (222)
Q Consensus       136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~---~~s~~F-~~a~kl~r~~wK~~~i~~~~~~~~~~i~  211 (222)
                      +.+.+++..+.|+.++-.+==--+.+.||.+|.++...++-.   .++..- ++|.+..++..||+.+.+++++++++|.
T Consensus       206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~  285 (297)
T KOG0810|consen  206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVL  285 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHH
Confidence            578888899999988877777778888988888876554433   344555 7777777777677766666555555444


Q ss_pred             HHH
Q 027525          212 ANL  214 (222)
Q Consensus       212 ~~~  214 (222)
                      +.+
T Consensus       286 v~~  288 (297)
T KOG0810|consen  286 VVV  288 (297)
T ss_pred             hhh
Confidence            333

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.92  E-value=0.43  Score=36.36  Aligned_cols=95  Identities=16%  Similarity=0.145  Sum_probs=67.3

Q ss_pred             CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525            1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS   80 (222)
Q Consensus         1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~   80 (222)
                      ||...+|.-.+|..+++.|..+   .+.  .+-+...+++.+...... +..--.+..+++.+-|...++ +.++++++.
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~---~~~--~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~vy~~~~d-l~~~~v~~~   73 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRD---VSE--EERQKLFEKFIKKKSSRN-SKQSPIFEHDNYRIVYKRYSD-LYFVVVGDE   73 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESST---STS--HHHHHHHHHHHHHHHTSS-SSSTSEEEETTEEEEEEEETT-EEEEEEESS
T ss_pred             CEEEEEEEcCCCCEEEehhcCC---ccH--HHHHHHHHHHHHHHHhcc-cccceeeecccceeeeEeecc-EEEEEEeec
Confidence            8999999988888999999863   211  111234444443332221 023445778899888888889 999999999


Q ss_pred             CCChHHHHHHHHHHHHHH-hcch
Q 027525           81 SYPRKLAFHYLQDLQKEF-QKFD  102 (222)
Q Consensus        81 ~~p~~~af~fL~ei~~~F-~~~~  102 (222)
                      +...-....||..+.+.+ .-++
T Consensus        74 ~eNel~~~e~l~~~v~~l~~~~~   96 (141)
T PF01217_consen   74 NENELLLLEFLHRLVEVLDDYFG   96 (141)
T ss_dssp             TSBHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccchHHHHHHHHHhhhhhhhhhc
Confidence            999999999999988887 4443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=95.64  E-value=0.068  Score=37.96  Aligned_cols=70  Identities=9%  Similarity=0.020  Sum_probs=39.8

Q ss_pred             HHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CC----------chHHHHHHH--hhhHHHHHHHHHH
Q 027525          141 LNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WG----------SPRLEVIAL--KWTPIAIIVAVAA  207 (222)
Q Consensus       141 i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~----------a~kl~r~~w--K~~~i~~~~~~~~  207 (222)
                      +-+.+..++..|.+.+++-   ...++.|.+.|+.|......| .-          -+++.|+.|  |+.+.+++.++++
T Consensus         6 vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~   82 (92)
T PF03908_consen    6 VTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLL   82 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4455555566665554443   445556666666665554444 22          245666666  7777777666666


Q ss_pred             HHHHHH
Q 027525          208 ILLWAN  213 (222)
Q Consensus       208 ~~i~~~  213 (222)
                      +++|..
T Consensus        83 ~v~yI~   88 (92)
T PF03908_consen   83 VVLYIL   88 (92)
T ss_pred             HHHHHh
Confidence            666554

>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=94.72  E-value=0.09  Score=44.88  Aligned_cols=54  Identities=15%  Similarity=0.325  Sum_probs=37.3

Q ss_pred             CCceEEEEcCeEEEEEeeCCc-EEEEEEeCCCCChHHHHHHHHHHHHHH-hcchhh
Q 027525           51 PSKMTIRVDHHSFHYLMENGI-GCFITLCDSSYPRKLAFHYLQDLQKEF-QKFDIS  104 (222)
Q Consensus        51 ~~k~s~~~~~~~~h~l~~~~~-~~~~cvtd~~~p~~~af~fL~ei~~~F-~~~~~~  104 (222)
                      .+..+|++++|.++|...|+. ++|++|=..-..-...=.||+.|+..| ..|...
T Consensus        17 ~~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~   72 (279)
T PF04086_consen   17 SGNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQ   72 (279)
T ss_dssp             -----------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             cCCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHH
Confidence            355678999999999887754 999999999988888889999999999 999863

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=94.45  E-value=0.19  Score=35.25  Aligned_cols=51  Identities=10%  Similarity=0.145  Sum_probs=41.0

Q ss_pred             hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCc
Q 027525          136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGS  186 (222)
Q Consensus       136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a  186 (222)
                      +++.+++..+.+.-+-+.++=+++=+=.++-+.|.+.|+.....|... +..
T Consensus        10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~   61 (89)
T PF00957_consen   10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM   61 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            566777777777777777777777777888999999999999999999 554

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=92.47  E-value=0.4  Score=39.80  Aligned_cols=58  Identities=5%  Similarity=0.065  Sum_probs=38.4

Q ss_pred             hHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhh---cccc-CCchHHHHHHH
Q 027525          137 NLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKH---VSSI-WGSPRLEVIAL  194 (222)
Q Consensus       137 kl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~---s~~F-~~a~kl~r~~w  194 (222)
                      .|.++..-+.|..+...+==+.+.++.|..|.+.+..++-...   +... -+|.+--|+..
T Consensus       186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaR  247 (280)
T COG5074         186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAAR  247 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHH
Confidence            4666666666666666666678899999999888877766543   3333 44544455554

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=91.74  E-value=2.5  Score=32.49  Aligned_cols=63  Identities=16%  Similarity=0.197  Sum_probs=39.2

Q ss_pred             HHHHHHHcCCCC------CCCCceEEEEcCeEEEEEe-eCCcEEEEEEeCCCCChHHHHHHHHHHHHHHhcc
Q 027525           37 AEFILKEISRGA------LAPSKMTIRVDHHSFHYLM-ENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKF  101 (222)
Q Consensus        37 a~~il~~i~~~~------~~~~k~s~~~~~~~~h~l~-~~~~~~~~cvtd~~~p~~~af~fL~ei~~~F~~~  101 (222)
                      .+.+..++.|..      ...+..+++.+.|.+|+.- -.| +-|+++||++.+. ..-.+++.+.+.|.+|
T Consensus        45 l~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TG-lKFvl~td~~~~~-~~~~l~~~~~~lY~dy  114 (142)
T PF04099_consen   45 LKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTG-LKFVLITDPNVPS-LRDELLRIYYELYVDY  114 (142)
T ss_dssp             HHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS--EEEEEE-TTCCH-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcC-cEEEEEecCCCcc-HHHHHHHHHHHHHHHH
Confidence            455666777721      1246778899999999875 488 9999999999863 3345566666655333

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []

Probab=91.55  E-value=0.25  Score=37.35  Aligned_cols=58  Identities=16%  Similarity=0.346  Sum_probs=35.7

Q ss_pred             HHHHHHHcCCCC-CCCCceEEE-EcCeEEEEEe---eCCcEEEEEEeCCCCChHHHHHHHHHHH
Q 027525           37 AEFILKEISRGA-LAPSKMTIR-VDHHSFHYLM---ENGIGCFITLCDSSYPRKLAFHYLQDLQ   95 (222)
Q Consensus        37 a~~il~~i~~~~-~~~~k~s~~-~~~~~~h~l~---~~~~~~~~cvtd~~~p~~~af~fL~ei~   95 (222)
                      -..++.++-|-. +.-+|++.. .|||-+||..   +++ -+++|.+..+.|+-+|-..|.|++
T Consensus        47 ~dmVlPkVV~v~GNKVTK~S~~lIDGyDCYYTT~~~d~~-~vlVCFt~~~vPKILPiRlLSeLK  109 (141)
T PF09426_consen   47 HDMVLPKVVPVEGNKVTKMSMHLIDGYDCYYTTEDNDDN-KVLVCFTRVDVPKILPIRLLSELK  109 (141)
T ss_dssp             HHTTGGG----SS-SSEE--S--SSSEEEEE---SS-TT-EEEEEEEETTS-SSHHHHHHHHHT
T ss_pred             hhccccceEEccCCeEEEEEeecccccceeeecccCCCC-eEEEEEEecCCcceecHHHHHhhc
Confidence            333444544432 224455555 4899999988   345 999999999999999999999987

Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=90.59  E-value=1.3  Score=36.66  Aligned_cols=31  Identities=13%  Similarity=0.148  Sum_probs=16.6

Q ss_pred             chHHHHHHHHhccCc---hhhhhHHHHHhhhccc
Q 027525          118 FESIIGNIRKQYVDT---RTQANLSKLNANRGQD  148 (222)
Q Consensus       118 f~~~l~~~~~~yn~~---~~~dkl~~i~~~v~~v  148 (222)
                      ....|++..+.|++.   ...|=+..++.++++|
T Consensus        76 I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V  109 (230)
T PF03904_consen   76 IKSSLEETTKDFIDKTEKVHNDFQDILQDELKDV  109 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344566666666543   2234555666666555

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.23  E-value=1.3  Score=37.80  Aligned_cols=59  Identities=12%  Similarity=0.027  Sum_probs=44.9

Q ss_pred             hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcc---cc-CCchHHHHHHH
Q 027525          136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVS---SI-WGSPRLEVIAL  194 (222)
Q Consensus       136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~---~F-~~a~kl~r~~w  194 (222)
                      +.+.+++.+|.||..|+++==--+=+-|+.+|.+++.-++...+..   .= ++|.+-++++.
T Consensus       180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~  242 (269)
T KOG0811|consen  180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKAR  242 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999988888888999999999988887766533   22 44444445443

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.93  E-value=4.1  Score=37.64  Aligned_cols=88  Identities=16%  Similarity=0.201  Sum_probs=62.9

Q ss_pred             EEEEEEecCCeeeeeeccCCCCCCCChhH-HHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCc-EEEEEEeCCC
Q 027525            4 MTIVGRVSDGLPLARGPRYLNQEHDSFSF-YKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGI-GCFITLCDSS   81 (222)
Q Consensus         4 y~~IaR~~d~~iLae~~~~~~~~~~~~~~-~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~-~~~~cvtd~~   81 (222)
                      ++.+.|  ||++|-.|..    .+.+|.+ +....+.++-.=..     +--+++.+.|+.-|-.+|+. ++|+|+-.+-
T Consensus         5 faIFtk--gG~vLw~~~~----~~~~~~~~in~lI~~~ll~er~-----~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki   73 (587)
T KOG0781|consen    5 FAIFTK--GGLVLWCYQE----VGDNLKGPINALIRSVLLSERG-----GVNSFTFEAYTLKYQLDNQYSLVFVVVFQKI   73 (587)
T ss_pred             eeeecC--CcEEEEEecc----cchhccchHHHHHHHHHHHhhc-----CcccCchhheeEeeeecCCccEEEEEEEecc
Confidence            566667  9999999987    3555653 33455555433122     22237888999888776543 9999999888


Q ss_pred             CChHHHHHHHHHHHHHH-hcch
Q 027525           82 YPRKLAFHYLQDLQKEF-QKFD  102 (222)
Q Consensus        82 ~p~~~af~fL~ei~~~F-~~~~  102 (222)
                      ..-..+-.+|+++.+.| ..|.
T Consensus        74 ~~L~yv~~ll~~v~~~f~e~~~   95 (587)
T KOG0781|consen   74 LTLTYVDKLLNDVLNLFREKYD   95 (587)
T ss_pred             chhhhHHHHHHHHHHHHHHHhc
Confidence            87788889999999999 8885

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.75  E-value=0.51  Score=47.42  Aligned_cols=46  Identities=15%  Similarity=0.086  Sum_probs=37.7

Q ss_pred             HHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH--hhh
Q 027525          152 VIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL--KWT  197 (222)
Q Consensus       152 m~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w--K~~  197 (222)
                      -..--+++.+|||+|+.++++|++|++++.+| ..|.++.-++-  ||+
T Consensus       943 ~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk~~  991 (993)
T KOG1983|consen  943 ASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVKKWY  991 (993)
T ss_pred             hhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhc
Confidence            33445778999999999999999999999999 98887765552  654

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=80.29  E-value=9.4  Score=30.34  Aligned_cols=79  Identities=16%  Similarity=0.111  Sum_probs=43.2

Q ss_pred             hhHHHHHhhhccchhHHHHhHHHHHH---------chhchHHHHHHHHHHHhhcccc-CCchHHHHHH----H---hhhH
Q 027525          136 ANLSKLNANRGQDLDIVIEHMYQIVE---------RKRQSEISEEILTATRKHVSSI-WGSPRLEVIA----L---KWTP  198 (222)
Q Consensus       136 dkl~~i~~~v~~vk~im~~Ni~~il~---------Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~----w---K~~~  198 (222)
                      ....+++.+++.++.-+.+-|+++-.         ||+.=+.....-..+..-...+ ..-..+|..+    |   ||..
T Consensus        80 ~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~~~  159 (177)
T PF07798_consen   80 SENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLRWLV  159 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35778888899988888888887544         3332233333333333333344 3333455544    5   7755


Q ss_pred             HHHHHHHHHHHHHHHH
Q 027525          199 IAIIVAVAAILLWANL  214 (222)
Q Consensus       199 i~~~~~~~~~~i~~~~  214 (222)
                      -++++++.+++-+++|
T Consensus       160 g~i~~~~a~~la~~r~  175 (177)
T PF07798_consen  160 GVIFGCVALVLAILRL  175 (177)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
2nup_C	196	Crystal Structure Of The Human Sec23a24A HETERODIME		3e-25
3egd_C	157	Crystal Structure Of The Mammalian Copii-Coat Prote		1e-24
1ifq_A	138	Sec22b N-Terminal Domain Length = 138		5e-20

>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 196

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 100/162 (61%), Gaps = 3/162 (1%)
Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct: 2   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 59
Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
            +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct: 60  MTFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 118
Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVER 162
            I   +K Y+D+R + NL  +N        I++ ++ ++++R
Sbjct: 119 FIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQR 160

>pdb|3EGD|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 157

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 90/142 (63%), Gaps = 3/142 (2%)
Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 58
Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
            +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct: 59  MTFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 117
Query: 121 IIGNIRKQYVDTRTQANLSKLN 142
            I   +K Y+D+R + NL  +N
Sbjct: 118 FIQKTKKLYIDSRARRNLGSIN 139

>pdb|1IFQ|A Chain A, Sec22b N-Terminal Domain Length = 138

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 80/129 (62%), Gaps = 3/129 (2%)
Query: 2   VKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHH 61
           V +T + RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+     
Sbjct: 13  VLLTXIARVADGLPLAASXQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGAX 70
Query: 62  SFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFESI 121
           +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++ 
Sbjct: 71  TFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTF 129
Query: 122 IGNIRKQYV 130
           I   +K Y+
Sbjct: 130 IQKTKKLYI 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	5e-29
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	5e-22
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	2e-18
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	5e-18
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	3e-10

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Length = 196

 Score =  106 bits (265), Expect = 5e-29
 Identities = 51/162 (31%), Positives = 100/162 (61%), Gaps = 3/162 (1%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDH 60
           MV +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+    
Sbjct: 2   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGA 59

Query: 61  HSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFES 120
            +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++
Sbjct: 60  MTFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDT 118

Query: 121 IIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVER 162
            I   +K Y+D+R + NL  +N        I++ ++ ++++R
Sbjct: 119 FIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQR 160

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Length = 199

 Score = 88.4 bits (218), Expect = 5e-22
 Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 12/169 (7%)

Query: 1   MVKMTIVGRVSDGLPLARGPRYLNQEHD--SFSFYKQQ-----AEFILKEISRGALAPSK 53
           ++K+  +     G P A     L   +D  SFSF+++        F  + I   +   S+
Sbjct: 1   LMKLYSLSVFYKGEPKAVL---LKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSR 57

Query: 54  MTIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPY 113
            +++   +  H  + +     + + DS YP ++AF  L+ +  EF K    +   +  P 
Sbjct: 58  ASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPA 117

Query: 114 SCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVER 162
           +     + +     +Y + R    +SK+ A   +   I+   M  ++ER
Sbjct: 118 TI--HYTALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMESLLER 164

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Length = 173

 Score = 78.2 bits (192), Expect = 2e-18
 Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 13/138 (9%)

Query: 1   MVKMTIVGRVSDGLPL-----ARGPRYLNQEHDSFSF-YKQQAEFILKEISRGALAPSKM 54
           +       ++ + + +     ARG   L  +H      + +  E IL +I       +K+
Sbjct: 41  LPMSDQYVKLEEAMAILFAVVARGTTIL-AKHAWCGGNFLEVTEQILAKIPSE---NNKL 96

Query: 55  TIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYS 114
           T    ++ FHY+ ++ I  ++ + D  + R  AF +L +++K FQ        +   PY+
Sbjct: 97  TYSHGNYLFHYICQDRI-VYLCITDDDFERSRAFSFLNEVKKRFQT-TYGSRAQTALPYA 154

Query: 115 -CVKFESIIGNIRKQYVD 131
              +F S++    K + +
Sbjct: 155 MNSEFSSVLAAQLKHHSE 172

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Length = 169

 Score = 77.2 bits (189), Expect = 5e-18
 Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 8   GRVSDGLPL-----ARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHS 62
             ++ G+ +     ARG   L +       + +  E IL +I       +K+T    ++ 
Sbjct: 38  LHLNKGMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSE---NNKLTYSHGNYL 94

Query: 63  FHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYS-CVKFESI 121
           FHY+ ++ I  ++ + D  + R  AF +L +++K FQ        +   PY+   +F S+
Sbjct: 95  FHYICQDRI-VYLCITDDDFERSRAFSFLNEVKKRFQT-TYGSRAQTALPYAMNSEFSSV 152

Query: 122 IGNIRKQYVDTRTQAN 137
           +    K + +     +
Sbjct: 153 LAAQLKHHSENHHHHH 168

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A Length = 144

 Score = 55.8 bits (134), Expect = 3e-10
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 11/126 (8%)

Query: 17  ARGPRYLNQEHD--SFSFY-----KQQAEFILKEISRGALAPSKMTIRVDHHSFH-YLME 68
                 L++  D   F F+      Q   F  + ++    A  + +I   ++  H Y   
Sbjct: 17  GEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARS 76

Query: 69  NGIGCFITLCDSSYPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRK 127
            GI C + + D  YP + A+  L  +  E+           +T     +K + +   I K
Sbjct: 77  EGI-CGVLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISK 135

Query: 128 QYVDTR 133
            Y D  
Sbjct: 136 -YQDPS 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	100.0
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	100.0
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	100.0
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	99.97
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	99.94
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	99.92
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	99.92
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	99.87
2nps_A	74	VAMP-4, vesicle-associated membrane protein 4; ves	99.85
3b5n_A	61	Synaptobrevin homolog 1; snare complex, syntaxin,	99.84
1n7s_A	63	Vesicle-associated membrane protein 2; neuronal sn	99.84
1l4a_A	80	Synaptobrevin; snare, snare complex, membrane fusi	99.84
1sfc_A	96	VAMP 2, protein (synaptobrevin 2); membrane fusion	99.82
1gl2_A	65	Endobrevin; membrane protein, membrane fusion prot	99.78
1urq_A	63	M-tomosyn isoform; transport protein, tomosyn-snar	99.67
3fie_C	38	Fragment of vesicle-associated membrane protein 2;	98.64
3zym_A	310	Phosphatidylinositol-binding clathrin assembly PR	98.33
2fh5_A	185	Signal recognition particle receptor alpha subunit	97.47
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	96.24
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	96.06
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	95.98
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	95.86
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	92.32
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	91.79
2fz0_A	149	R-snare NYV1P, V-snare component of the vacuolar s	90.09
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	89.94
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	89.87
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	84.64
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	80.28

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=100.00  E-value=2.1e-52  Score=339.07  Aligned_cols=190  Identities=27%  Similarity=0.575  Sum_probs=122.0

Q ss_pred             CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525            1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS   80 (222)
Q Consensus         1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~   80 (222)
                      ||+|+||||.+|++|||++++.+...+.+..+++.+++.++++++++.  ++|++++.++|+|||+.++| ++|+||||+
T Consensus         2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~--~~r~s~~~~~y~fhy~~~~g-l~~l~i~d~   78 (196)
T 2nut_C            2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGAMTFHYIIEQG-VCYLVLCEA   78 (196)
T ss_dssp             CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTS--CSEEEEEETTEEEEEEEETT-EEEEEEEET
T ss_pred             ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCC--CCeEEEEeCCEEEEEEeCCC-eEEEEEEcC
Confidence            999999999888999999997521112235567789999999999733  89999999999999999999 999999999


Q ss_pred             CCChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHHHH
Q 027525           81 SYPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQI  159 (222)
Q Consensus        81 ~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~i  159 (222)
                      +||+++||.||++|+++| ..|+. .+...++||++.+|++.|+++|++|+||++.|++.+++++|+||++||++||+++
T Consensus        79 ~yp~r~af~fL~~i~~~F~~~~~~-~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~ni~~v  157 (196)
T 2nut_C           79 AFPKKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV  157 (196)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTTGGGHHHHHHHHTTTSCCC-----------------CCEEEHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHhccc-hhccccCCCchHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 99975 3444468999999999999999999999989999999999999999999999999


Q ss_pred             HHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525          160 VERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL  194 (222)
Q Consensus       160 l~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w  194 (222)
                      |+|||+||.|++||++|+.+|..| ++|++++|+||
T Consensus       158 l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~  193 (196)
T 2nut_C          158 LQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRST  193 (196)
T ss_dssp             C-----------------------------------
T ss_pred             HHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 99999999998

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=100.00  E-value=1.3e-53  Score=344.02  Aligned_cols=181  Identities=18%  Similarity=0.291  Sum_probs=143.4

Q ss_pred             cEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCCC
Q 027525            2 VKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSS   81 (222)
Q Consensus         2 I~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~   81 (222)
                      |+|+||||  |++|||||+.    .+|||.   .+++.+|+++|+.   ++|+++++|+|+|||+.++| ++|+|+||.+
T Consensus         4 ilYa~VAr--g~~iLae~t~----~~gnf~---~ia~~iL~kip~~---~~k~s~~~~~y~fHyl~~~g-l~yl~i~d~~   70 (189)
T 4b93_A            4 ILFAVVAR--GTTILAKHAW----CGGNFL---EVTEQILAKIPSE---NNKLTYSHGNYLFHYICQDR-IVYLCITDDD   70 (189)
T ss_dssp             EEEEEEEE--TTEEEEEEES----SEECHH---HHHHHHHTTCCSS---SEEEEEEETTEEEEEEEETT-EEEEEEEETT
T ss_pred             eEEEEEEe--CCEEEEeCCC----CCCCHH---HHHHHHHHhCCCC---CCeEEEEECCEEEEEEEeCC-eEEEEEEcCc
Confidence            89999999  9999999997    579999   6999999999986   89999999999999999999 9999999999


Q ss_pred             CChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccc-cchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHHHH
Q 027525           82 YPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCV-KFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQI  159 (222)
Q Consensus        82 ~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~i  159 (222)
                      ||+++||.||++|+++| +.|+..  +..+.|+++. +|++.|++.|++|++|++.|++.+++++|+||++||++||+++
T Consensus        71 yp~r~af~fL~~i~~eF~~~~~~~--~~~~~~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~Ni~~v  148 (189)
T 4b93_A           71 FERSRAFSFLNEVKKRFQTTYGSR--AQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLV  148 (189)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHGGG--GGTCCTTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTTCCEECCCCB
T ss_pred             cCHHHHHHHHHHHHHHHHhhcccc--ccccCCccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 999763  3345788875 8999999999999999989999999999999999999999999


Q ss_pred             HHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH-hhh
Q 027525          160 VERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL-KWT  197 (222)
Q Consensus       160 l~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w-K~~  197 (222)
                      |+|||+||.|++||++|+.+|..| ++|++|+|+|| |+.
T Consensus       149 l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~mwwkn~  188 (189)
T 4b93_A          149 AQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNI  188 (189)
T ss_dssp             CTTSSBCCCCEETTCC------------------------
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999 99999999998 553

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=100.00  E-value=1.2e-38  Score=257.92  Aligned_cols=181  Identities=14%  Similarity=0.174  Sum_probs=148.3

Q ss_pred             cEEEEEEEecCC--eeeeeeccCCC---CCCCChhH-HHHHHHHHHHHcCCCCCCCCceEEEEcCeEEE-EEeeCCcEEE
Q 027525            2 VKMTIVGRVSDG--LPLARGPRYLN---QEHDSFSF-YKQQAEFILKEISRGALAPSKMTIRVDHHSFH-YLMENGIGCF   74 (222)
Q Consensus         2 I~y~~IaR~~d~--~iLae~~~~~~---~~~~~~~~-~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h-~l~~~~~~~~   74 (222)
                      |++..|.|..+.  ++|+...+.++   -..++..+ +.-.++.+++++++    ++|++++.|+|.|| |+.++| ++|
T Consensus         4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~----~~r~s~~~~~y~fH~y~~~~g-l~y   78 (199)
T 3kyq_A            4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK----GSRASVKEQEYLCHVYVRSDS-LAG   78 (199)
T ss_dssp             EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT----TEEEEEECSSEEEEEEECTTS-EEE
T ss_pred             EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC----CCeEEEEeCCEEEEEEEecCC-EEE
Confidence            566677774333  56777766421   01111122 22456799999887    68999999999999 899999 999


Q ss_pred             EEEeCCCCChHHHHHHHHHHHHHH-hcchhhhh-cccCCCcccccchHHHHHHHHhccCchhhhhHHHHHhhhccchhHH
Q 027525           75 ITLCDSSYPRKLAFHYLQDLQKEF-QKFDISLI-DKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIV  152 (222)
Q Consensus        75 ~cvtd~~~p~~~af~fL~ei~~~F-~~~~~~~~-~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im  152 (222)
                      +|+||++||+++||.||++|+++| +.|+...+ ....+|+   .| +.+++.|++|+||++.|++.+++++|+||++||
T Consensus        79 l~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~---~f-~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM  154 (199)
T 3kyq_A           79 VVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATI---HY-TALDGHLSRYQNPREADPMSKVQAELDETKIIL  154 (199)
T ss_dssp             EEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTC---CC-CTHHHHHHHTTSGGGCCCCHHHHHHHHTCCCEE
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccc---cc-HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 99975322 1233455   46 678889999999999999999999999999999


Q ss_pred             HHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHH
Q 027525          153 IEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEV  191 (222)
Q Consensus       153 ~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r  191 (222)
                      ++||+++|+|||+||+|++||++|+.+|..| ++|+++++
T Consensus       155 ~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns  194 (199)
T 3kyq_A          155 HNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS  194 (199)
T ss_dssp             ESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999 99999985

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=99.97  E-value=5.3e-31  Score=208.35  Aligned_cols=115  Identities=23%  Similarity=0.418  Sum_probs=108.0

Q ss_pred             cEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCCC
Q 027525            2 VKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSS   81 (222)
Q Consensus         2 I~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~   81 (222)
                      |+|+||||  |++|||||+.    .+|||.   .+++.+|+++|++   ++|++++.++|+|||++++| ++|+||||++
T Consensus        56 I~Ya~VAr--g~tiLAE~t~----~~gnf~---~va~~iL~kip~~---~~r~t~~~~~y~fHyl~~dg-l~yl~i~D~~  122 (173)
T 4afi_A           56 ILFAVVAR--GTTILAKHAW----CGGNFL---EVTEQILAKIPSE---NNKLTYSHGNYLFHYICQDR-IVYLCITDDD  122 (173)
T ss_dssp             EEEEEEEE--TTEEEEEEES----SCCCHH---HHHHHHHTTSCSS---SEEEEEEETTEEEEEEEETT-EEEEEEEETT
T ss_pred             EEEEEEEC--CCEEEEEccC----CCCCHH---HHHHHHHHhCCCC---CCeEEEEECCEEEEEEEECC-EEEEEEECCc
Confidence            89999999  9999999998    579999   7999999999986   78999999999999999999 9999999999


Q ss_pred             CChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccc-cchHHHHHHHHhccC
Q 027525           82 YPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCV-KFESIIGNIRKQYVD  131 (222)
Q Consensus        82 ~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~yn~  131 (222)
                      ||+++||+||++|+++| ++|+.  .+..++||+++ +|++.|+++|++||+
T Consensus       123 ~~rr~aF~FLedI~~eF~~~yg~--~~~ta~pya~~~eF~~~L~~~M~~yn~  172 (173)
T 4afi_A          123 FERSRAFSFLNEVKKRFQTTYGS--RAQTALPYAMNSEFSSVLAAQLKHHSE  172 (173)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHGG--GGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred             cChhHHHHHHHHHHHHHHHHhch--hhhhccCcchhHHHHHHHHHHHHHhcC
Confidence            99999999999999999 99975  34557999998 999999999999985

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=99.94  E-value=5.1e-27  Score=184.95  Aligned_cols=116  Identities=22%  Similarity=0.416  Sum_probs=100.9

Q ss_pred             cEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCCC
Q 027525            2 VKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSS   81 (222)
Q Consensus         2 I~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~   81 (222)
                      |+|+||+|  |++|||||++    .+++|.   .+++.+++++++.   ++|++++.|+|+|||+.+|| ++|+||||++
T Consensus        46 ilYa~VaR--G~~VLae~t~----~~gnf~---~iak~ll~kl~~~---~~r~s~~~~~y~fHyl~~ng-l~yl~I~D~~  112 (169)
T 2vx8_A           46 ILFAVVAR--GTTILAKHAW----CGGNFL---EVTEQILAKIPSE---NNKLTYSHGNYLFHYICQDR-IVYLCITDDD  112 (169)
T ss_dssp             CCEEEEEE--TTEEEEEEES----SCBSHH---HHHHHHHTTSCSS---CEEEEEEETTEEEEEEEETT-EEEEEEEETT
T ss_pred             eEEEEEEc--CCEEEEEecc----CCCCHH---HHHHHHHhhCCCC---CCceEEEECCEEEEEEEECC-EEEEEEEccc
Confidence            89999999  9999999997    578999   6999999999985   78999999999999999999 9999999999


Q ss_pred             CChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccc-cchHHHHHHHHhccCc
Q 027525           82 YPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCV-KFESIIGNIRKQYVDT  132 (222)
Q Consensus        82 ~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~yn~~  132 (222)
                      ||+++||.||++|+++| +.|+. . +..++||+++ +|++.|++.|++|++.
T Consensus       113 yp~r~AF~fLedI~~eF~~~y~~-~-~~~a~pysf~~eF~~~Lk~~~~~~~~~  163 (169)
T 2vx8_A          113 FERSRAFSFLNEVKKRFQTTYGS-R-AQTALPYAMNSEFSSVLAAQLKHHSEN  163 (169)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTT-G-GGTCCTTTTHHHHHHHHSCC-------
T ss_pred             cchHHHHHHHHHHHHHHHHHhhh-h-hhccCCcchhHHHHHHHHHHHHHhcCc
Confidence            99999999999999999 99975 2 3345899998 9999999999999753

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=99.92  E-value=1.6e-24  Score=166.93  Aligned_cols=128  Identities=19%  Similarity=0.218  Sum_probs=98.4

Q ss_pred             CcEEEE-EEEecC--CeeeeeeccCCC---CCCCChhHH-HHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEE-eeCCcE
Q 027525            1 MVKMTI-VGRVSD--GLPLARGPRYLN---QEHDSFSFY-KQQAEFILKEISRGALAPSKMTIRVDHHSFHYL-MENGIG   72 (222)
Q Consensus         1 mI~y~~-IaR~~d--~~iLae~~~~~~---~~~~~~~~~-~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l-~~~~~~   72 (222)
                      |.+|++ |+|.++  +++|+++++.+.   -+.++..++ +.+++.+++|+++    ++|++++.++|+|||+ .++| +
T Consensus         5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~----~~R~sv~~~~y~fH~~~~~~g-l   79 (144)
T 3bw6_A            5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA----GQRQSIEEGNYIGHVYARSEG-I   79 (144)
T ss_dssp             CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT----TEEEEEEETTEEEEEEECTTS-E
T ss_pred             EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC----CceEEEEeCCEEEEEEEecCC-E
Confidence            555555 999544  899999998521   012222433 5789999999997    5899999999999999 7899 9


Q ss_pred             EEEEEeCCCCChHHHHHHHHHHHHHH-hcchhhhhcccCC---CcccccchHHHHHHHHhccCchhhhh
Q 027525           73 CFITLCDSSYPRKLAFHYLQDLQKEF-QKFDISLIDKITR---PYSCVKFESIIGNIRKQYVDTRTQAN  137 (222)
Q Consensus        73 ~~~cvtd~~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~---~~~~~~f~~~l~~~~~~yn~~~~~dk  137 (222)
                      +|+|+||++||+|+||.||++|+++| ++|+...+....+   |+   .| +.|++.|++|+||++.|+
T Consensus        80 ~~l~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~~~---~f-~~l~~~i~kYqdp~~aD~  144 (144)
T 3bw6_A           80 CGVLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDAL---KM-KQLDTYISKYQDPSQADA  144 (144)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCGGG---CC-THHHHHHHHTSCC-----
T ss_pred             EEEEEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccCCc---ch-HHHHHHHHHhCchhhcCC
Confidence            99999999999999999999999999 9998643444445   44   55 788888889999988774

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=99.92  E-value=1.5e-25  Score=159.09  Aligned_cols=76  Identities=14%  Similarity=0.161  Sum_probs=67.8

Q ss_pred             hhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH----hhhHHHHHHHHHHH
Q 027525          134 TQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL----KWTPIAIIVAVAAI  208 (222)
Q Consensus       134 ~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w----K~~~i~~~~~~~~~  208 (222)
                      ++|++.+++++|+||+++|++||+++|+|||+||+|++||++|+.+|..| ++|++++|+||    |+++++++++++++
T Consensus         3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il   82 (91)
T 3hd7_A            3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL   82 (91)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999 99999999998    66666665554444


Q ss_pred             H
Q 027525          209 L  209 (222)
Q Consensus       209 ~  209 (222)
                      +
T Consensus        83 ~   83 (91)
T 3hd7_A           83 I   83 (91)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=99.87  E-value=2.3e-24  Score=159.95  Aligned_cols=62  Identities=15%  Similarity=0.171  Sum_probs=60.0

Q ss_pred             hhhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525          133 RTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL  194 (222)
Q Consensus       133 ~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w  194 (222)
                      .+.|++.+++.+|+||++||++||+++|+|||+||+|++||++|+.+|..| ++|++++|+||
T Consensus        30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmw   92 (119)
T 2kog_A           30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW   92 (119)
T ss_dssp             SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345999999999999999999999999999999999999999999999999 99999999998

>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}

Probab=99.85  E-value=1.7e-22  Score=138.13  Aligned_cols=64  Identities=9%  Similarity=0.160  Sum_probs=60.2

Q ss_pred             CchhhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525          131 DTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL  194 (222)
Q Consensus       131 ~~~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w  194 (222)
                      +|++.|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..| ++|++++|+||
T Consensus         3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~w   67 (74)
T 2nps_A            3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW   67 (74)
T ss_dssp             ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677999999999999999999999999999999999999999999999999 99999999998

>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=99.84  E-value=7e-22  Score=130.03  Aligned_cols=59  Identities=14%  Similarity=0.205  Sum_probs=58.4

Q ss_pred             hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525          136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL  194 (222)
Q Consensus       136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w  194 (222)
                      |++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..| ++|++|+|+||
T Consensus         2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW   61 (61)
T 3b5n_A            2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW   61 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            789999999999999999999999999999999999999999999999 99999999999

>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B

Probab=99.84  E-value=9e-22  Score=130.45  Aligned_cols=60  Identities=15%  Similarity=0.169  Sum_probs=59.1

Q ss_pred             hhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525          135 QANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL  194 (222)
Q Consensus       135 ~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w  194 (222)
                      .|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..| ++|++++|+||
T Consensus         3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW   63 (63)
T 1n7s_A            3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW   63 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4899999999999999999999999999999999999999999999999 99999999999

>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.84  E-value=5.4e-22  Score=137.54  Aligned_cols=65  Identities=14%  Similarity=0.122  Sum_probs=61.6

Q ss_pred             ccCchhhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525          129 YVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL  194 (222)
Q Consensus       129 yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w  194 (222)
                      || |.+.|+|.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..| ++|++|+|+||
T Consensus         9 ~~-~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~w   74 (80)
T 1l4a_A            9 QP-VQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFW   74 (80)
T ss_dssp             CC-CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC
T ss_pred             CC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44 4456999999999999999999999999999999999999999999999999 99999999998

>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.82  E-value=3.9e-21  Score=137.38  Aligned_cols=61  Identities=15%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             hhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525          134 TQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL  194 (222)
Q Consensus       134 ~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w  194 (222)
                      +.|+|.+++.+|++|++||++||+++|+|||+||.|++||++|+.+|..| ++|++|+|+||
T Consensus        28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmw   89 (96)
T 1sfc_A           28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW   89 (96)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35999999999999999999999999999999999999999999999999 99999999998

>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.78  E-value=3.2e-20  Score=123.58  Aligned_cols=61  Identities=8%  Similarity=0.062  Sum_probs=51.8

Q ss_pred             CchhhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHH
Q 027525          131 DTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEV  191 (222)
Q Consensus       131 ~~~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r  191 (222)
                      +|++.|++.+++.+|++|+.||.+||+++|+|||+||.|++||++|+.+|..| ++|++|+|
T Consensus         4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r   65 (65)
T 1gl2_A            4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR   65 (65)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45667999999999999999999999999999999999999999999999999 99999986

>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.67  E-value=1.6e-17  Score=109.08  Aligned_cols=58  Identities=10%  Similarity=0.022  Sum_probs=54.9

Q ss_pred             hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHH
Q 027525          136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIA  193 (222)
Q Consensus       136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~  193 (222)
                      .++.+++.++++|+++|.+||++++||||+|+.|++||++|..+|..| +.|++|+++|
T Consensus         4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky   62 (63)
T 1urq_A            4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY   62 (63)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            479999999999999999999999999999999999999999999999 9999999886

>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}

Probab=98.64  E-value=4.2e-10  Score=66.15  Aligned_cols=31  Identities=19%  Similarity=0.300  Sum_probs=29.3

Q ss_pred             hhhhHHHHHhhhccchhHHHHhHHHHHHchh
Q 027525          134 TQANLSKLNANRGQDLDIVIEHMYQIVERKR  164 (222)
Q Consensus       134 ~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge  164 (222)
                      ..|++.++|.+|++|++||.+||+++|+||+
T Consensus         7 ~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~   37 (38)
T 3fie_C            7 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDC   37 (38)
T ss_dssp             CCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred             chhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence            3589999999999999999999999999997

>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}

Probab=98.33  E-value=1.4e-07  Score=80.66  Aligned_cols=32  Identities=13%  Similarity=0.192  Sum_probs=24.0

Q ss_pred             hhhHHHHHhhhccchhHHHHhHHHHHHchhch
Q 027525          135 QANLSKLNANRGQDLDIVIEHMYQIVERKRQS  166 (222)
Q Consensus       135 ~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~l  166 (222)
                      .|.+.++|++|+||++||++|||++|+|||+|
T Consensus       279 ~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l  310 (310)
T 3zym_A          279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL  310 (310)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence            48999999999999999999999999999986

>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1

Probab=97.47  E-value=0.00041  Score=54.58  Aligned_cols=90  Identities=16%  Similarity=0.193  Sum_probs=61.2

Q ss_pred             EEEEEEecCCeeeeeeccCCCCCCCCh-hHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCc-EEEEEEeCCC
Q 027525            4 MTIVGRVSDGLPLARGPRYLNQEHDSF-SFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGI-GCFITLCDSS   81 (222)
Q Consensus         4 y~~IaR~~d~~iLae~~~~~~~~~~~~-~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~-~~~~cvtd~~   81 (222)
                      ++.+.|  ||+||=+++..    ...+ ..+..+.+.++=.  ..   .+..+++.|+|.+.+..+|+. ++|++|=..-
T Consensus        14 ~~IfTk--GGvVLWs~~~~----~~~~~~~IN~LIr~VlLE--ER---~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~i   82 (185)
T 2fh5_A           14 FTIFSK--GGLVLWCFQGV----SDSCTGPVNALIRSVLLQ--ER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKI   82 (185)
T ss_dssp             EEEEET--TSBEEEEEBTT----TBSCCCHHHHHHHHTGGG--C----------CCCCCEEEEEEETTTTEEEEEEESCG
T ss_pred             EEEEeC--CeEEEEeecCC----cccccchHHHHHHHhhhc--cc---cCCCceeEcCeEEEEEEeccCCEEEEEEEccc
Confidence            556677  99999988542    2122 2344555555532  12   234468899999999887644 9999998887


Q ss_pred             CChHHHHHHHHHHHHHH-hcchhh
Q 027525           82 YPRKLAFHYLQDLQKEF-QKFDIS  104 (222)
Q Consensus        82 ~p~~~af~fL~ei~~~F-~~~~~~  104 (222)
                      .+-...=.||+.++..| ..|.+.
T Consensus        83 L~L~YiD~LL~~v~~~Fv~~Y~~~  106 (185)
T 2fh5_A           83 LTLTYVDKLIDDVHRLFRDKYRTE  106 (185)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHH
Confidence            77777889999999999 999753

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=96.24  E-value=0.13  Score=39.08  Aligned_cols=93  Identities=14%  Similarity=0.019  Sum_probs=69.8

Q ss_pred             CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525            1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS   80 (222)
Q Consensus         1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~   80 (222)
                      ||.+.+|--.+|.++|+.|..+   .-.+..+.+...+.+.+++.+.   + .-....+++.+.|...++ +.|+++++.
T Consensus        12 mI~~ililn~~Gk~~lsK~Y~~---~~~~~~~~~~~e~~i~~~~~r~---~-~~i~~~~~~~~vy~~~~~-Lyfv~~~~~   83 (153)
T 3tjz_C           12 TVKAILILDNDGDRLFAKYYDD---TYPSVKEQKAFEKNIFNKTHRT---D-SEIALLEGLTVVYKSSID-LYFYVIGSS   83 (153)
T ss_dssp             CEEEEEEECTTSCEEEEEECSS---SSCSHHHHHHHHHHHHHHHSSC---C-CCEEEETTEEEEEEECSS-CEEEEEEET
T ss_pred             HheEEEEECCCCCEEEEEeCCC---CCCCHHHHHHHHHHHHHHHhCC---C-CCEEEECCEEEEEEEECC-EEEEEEEcC
Confidence            7788888877788999998862   1123333334455666666543   3 346778999999999999 999999999


Q ss_pred             CCChHHHHHHHHHHHHHH-hcc
Q 027525           81 SYPRKLAFHYLQDLQKEF-QKF  101 (222)
Q Consensus        81 ~~p~~~af~fL~ei~~~F-~~~  101 (222)
                      +.+.-..+.||..+.+.+ .-|
T Consensus        84 ~eNel~ile~L~~~ve~l~~yf  105 (153)
T 3tjz_C           84 YENELMLMTVLNCLFDSLSQML  105 (153)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHHh
Confidence            999999999999998888 555

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=96.06  E-value=0.23  Score=36.96  Aligned_cols=95  Identities=12%  Similarity=0.090  Sum_probs=65.8

Q ss_pred             CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525            1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS   80 (222)
Q Consensus         1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~   80 (222)
                      ||....|.--+|.++|+.+..+   .+++  +-+...+.+.+.+.... ...--.++.+++.+-|...++ +.|+|+++.
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~---~~~~--~~~~~~~~f~~~v~~~~-~~~~~~~~~~~~~~vy~~~~~-Lyfv~~~~~   73 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQ---FDDD--EKQKLIEEVHAVVTVRD-AKHTNFVEFRNFKIIYRRYAG-LYFCICVDV   73 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSC---CCHH--HHHHHHHHHHHHHHTCC-TTSCSEEEETTEEEEEEEETT-EEEEEEECT
T ss_pred             CeEEEEEEcCCCCEEEEEeCCC---CChh--hhHHHHHHHHHHHhcCC-CCCCCEEEECCEEEEEEEECC-EEEEEEeCC
Confidence            8888888876788888888762   1122  22234444444433221 022335677899888888899 999999999


Q ss_pred             CCChHHHHHHHHHHHHHH-hcch
Q 027525           81 SYPRKLAFHYLQDLQKEF-QKFD  102 (222)
Q Consensus        81 ~~p~~~af~fL~ei~~~F-~~~~  102 (222)
                      +.+.-..+.||..+.+-+ .-++
T Consensus        74 ~~N~l~~le~L~~~ve~l~~yf~   96 (142)
T 2vgl_S           74 NDNNLAYLEAIHNFVEVLNEYFH   96 (142)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999988777 4443

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=95.98  E-value=0.11  Score=39.48  Aligned_cols=91  Identities=8%  Similarity=0.016  Sum_probs=63.8

Q ss_pred             CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525            1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS   80 (222)
Q Consensus         1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~   80 (222)
                      ||.+..|.--+|.++|+.+..+   ....+.  +.+.+.+.+.+.... ...--.++.+++.+-|...++ +.|+|+++.
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~---~~~~~~--~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~vy~~~~~-Lyfv~~~~~   73 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLA---TSDKER--KKMVRELMQVVLARK-PKMCSFLEWRDLKVVYKRYAS-LYFCCAIEG   73 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSC---CCHHHH--HHHHHHHHHHHHTSC-SSSCSEEEETTEEEEEEEETT-EEEEEEECS
T ss_pred             CeEEEEEECCCCCEEEEEeCCC---CCHHHH--HHHHHHHHHHHhccC-CCCCCeEEECCEEEEEEEECC-EEEEEEecC
Confidence            8888888876688888888763   111111  134444444443321 012335677899888888899 999999999


Q ss_pred             CCChHHHHHHHHHHHHHH
Q 027525           81 SYPRKLAFHYLQDLQKEF   98 (222)
Q Consensus        81 ~~p~~~af~fL~ei~~~F   98 (222)
                      +.+.-..+.||..+.+-+
T Consensus        74 ~~Nel~~le~L~~~vevl   91 (158)
T 1w63_Q           74 QDNELITLELIHRYVELL   91 (158)
T ss_dssp             SSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988777

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=95.86  E-value=0.031  Score=40.03  Aligned_cols=59  Identities=10%  Similarity=0.004  Sum_probs=43.3

Q ss_pred             hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhh---cccc-CCchHHHHHHH
Q 027525          136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKH---VSSI-WGSPRLEVIAL  194 (222)
Q Consensus       136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~---s~~F-~~a~kl~r~~w  194 (222)
                      +.+.++++.+.|+.+++.+==..+-+.|+.+|.++...++-...   +..- +.|.+-+++..
T Consensus        21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~r   83 (109)
T 3hd7_B           21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR   83 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            56888999999999998888888889999999988776655443   2233 55655555554

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=92.32  E-value=2.5  Score=37.14  Aligned_cols=89  Identities=8%  Similarity=0.082  Sum_probs=63.1

Q ss_pred             CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525            1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS   80 (222)
Q Consensus         1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~   80 (222)
                      ||.+..|.--.|..+|+.+...    ... .   ..+....+.+........--.++.+++.|.|...++ +.|+|+++.
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~----~~~-~---~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~-Lyfv~~~~~   71 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRD----DIG-R---NAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSN-IWLAAVTKQ   71 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSS----SCC-H---HHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETT-EEEEEEESS
T ss_pred             CeEEEEEECCCCCEEEEEecCC----CCC-h---hHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECC-EEEEEEecC
Confidence            8888888876677888887762    111 1   234444444443210022345678899988888899 999999999


Q ss_pred             CCChHHHHHHHHHHHHHH
Q 027525           81 SYPRKLAFHYLQDLQKEF   98 (222)
Q Consensus        81 ~~p~~~af~fL~ei~~~F   98 (222)
                      +.+.-..+.||..+.+-+
T Consensus        72 ~~n~l~~le~L~~~v~vl   89 (435)
T 2vgl_M           72 NVNAAMVFEFLYKMCDVM   89 (435)
T ss_dssp             CCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988777

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=91.79  E-value=1.4  Score=38.72  Aligned_cols=94  Identities=13%  Similarity=0.127  Sum_probs=64.0

Q ss_pred             CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525            1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS   80 (222)
Q Consensus         1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~   80 (222)
                      ||....|.--.|..+|+.+....  ...+..  +..-+.++.+-.+.   ..--.++.+++.|.|...++ +.|+|+++.
T Consensus         2 MI~~i~I~~~~Gk~~l~k~y~~~--~~~~~~--~~f~~~v~~~~~~~---~~~~~i~~~~~~~vy~~~~~-Lyfv~~~~~   73 (423)
T 1w63_M            2 SASAVYVLDLKGKVLICRNYRGD--VDMSEV--EHFMPILMEKEEEG---MLSPILAHGGVRFMWIKHNN-LYLVATSKK   73 (423)
T ss_dssp             CCCEEEEEETTTEECSCBCCSCS--CTTTTH--HHHHHHHHHHHHTS---CCCSEEEETTEEEEEEEETT-EEEEEEESS
T ss_pred             ceEEEEEECCCCCEEEEEecCCC--CChHHH--HHHHHHHhhccccC---CCCCEEEECCEEEEEEEECC-EEEEEEecC
Confidence            78888888666667777766531  111211  13344444442211   22345678899988888899 999999999


Q ss_pred             CCChHHHHHHHHHHHHHH-hcch
Q 027525           81 SYPRKLAFHYLQDLQKEF-QKFD  102 (222)
Q Consensus        81 ~~p~~~af~fL~ei~~~F-~~~~  102 (222)
                      +.+.-..+.||..+.+-+ .-++
T Consensus        74 ~~n~l~~le~L~~~v~~l~~yf~   96 (423)
T 1w63_M           74 NACVSLVFSFLYKVVQVFSEYFK   96 (423)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988877 4443

>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}

Probab=90.09  E-value=0.34  Score=35.70  Aligned_cols=61  Identities=16%  Similarity=0.288  Sum_probs=44.6

Q ss_pred             HHHHHHHHHcCCCC-CCCCceEEE-EcCeEEEEEe---eCCcEEEEEEeCCCCChHHHHHHHHHHHH
Q 027525           35 QQAEFILKEISRGA-LAPSKMTIR-VDHHSFHYLM---ENGIGCFITLCDSSYPRKLAFHYLQDLQK   96 (222)
Q Consensus        35 ~~a~~il~~i~~~~-~~~~k~s~~-~~~~~~h~l~---~~~~~~~~cvtd~~~p~~~af~fL~ei~~   96 (222)
                      .+-..++.++-+-. +.-+|++.. .|||-+||..   ++| .+++|.|..+.|+-+|...|.++++
T Consensus        49 Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~-~VlVCFt~~dvPKILPiRlLSeLk~  114 (149)
T 2fz0_A           49 LIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPK-TVYVCFTLVDIPKILPIRILSGLQE  114 (149)
T ss_dssp             HHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTT-EEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred             HHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCC-eEEEEEEecCCcccccHHHHhhhcc
Confidence            34455566665532 123455544 4899999987   245 8999999999999999999999874

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=89.94  E-value=0.86  Score=31.31  Aligned_cols=47  Identities=9%  Similarity=0.113  Sum_probs=23.8

Q ss_pred             hHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc
Q 027525          137 NLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI  183 (222)
Q Consensus       137 kl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F  183 (222)
                      .+..++.-+.+.-+-+.++=+++=+=.++-|.|.+.|.....+|...
T Consensus        13 ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l   59 (91)
T 3hd7_A           13 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKL   59 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444455555556666666666655

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=89.87  E-value=1.4  Score=32.80  Aligned_cols=91  Identities=10%  Similarity=0.102  Sum_probs=57.6

Q ss_pred             HHHHHHHcCCCCCCCCceEEEEcCeEEEEEe-eCCcEEEEEEeCCCCChHHHHHHHHHHH-HHHhcc-hhhhhcccCCCc
Q 027525           37 AEFILKEISRGALAPSKMTIRVDHHSFHYLM-ENGIGCFITLCDSSYPRKLAFHYLQDLQ-KEFQKF-DISLIDKITRPY  113 (222)
Q Consensus        37 a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~-~~~~~~~~cvtd~~~p~~~af~fL~ei~-~~F~~~-~~~~~~~~~~~~  113 (222)
                      +..+.+++.|.....+..+++.++|..|+.. -.| +=|+.+||+..+.  .-.||.+|. +.|.+| ..+-.-....|-
T Consensus        45 l~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tg-iKFvl~td~~~~~--i~~~l~~iy~~lYv~~v~kNPfy~~~~pI  121 (145)
T 2j3t_C           45 IRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTG-IKVVMNTDLGVGP--IRDVLHHIYSALYVEFVVKNPLCPLGQTV  121 (145)
T ss_dssp             HHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTS-CEEEEEECTTCCC--CHHHHHHHHHTTHHHHTTTCTTSCTTSCC
T ss_pred             HHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCC-CEEEEEecCCcch--HHHHHHHHHHHHHHHHHhcCCCCCCCCce
Confidence            5567778877432356778888999888654 567 9999999987554  348889988 566332 110000001122


Q ss_pred             ccccchHHHHHHHHhcc
Q 027525          114 SCVKFESIIGNIRKQYV  130 (222)
Q Consensus       114 ~~~~f~~~l~~~~~~yn  130 (222)
                      ....|+.-++++++++.
T Consensus       122 ~s~~Fd~~v~~~~~~~~  138 (145)
T 2j3t_C          122 QSELFRSRLDSYVRSLP  138 (145)
T ss_dssp             CCHHHHHHHHHHHTTST
T ss_pred             ecHHHHHHHHHHHHhCc
Confidence            22369988988887654

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=84.64  E-value=6.5  Score=31.41  Aligned_cols=93  Identities=14%  Similarity=0.121  Sum_probs=58.3

Q ss_pred             HHHHHHHcCCCCCCCCceEEEEcCeEEEEEe-eCCcEEEEEEeCCCCChHHHHHHHHHHHHHHhcc-hhhhhcccCCCcc
Q 027525           37 AEFILKEISRGALAPSKMTIRVDHHSFHYLM-ENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKF-DISLIDKITRPYS  114 (222)
Q Consensus        37 a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~-~~~~~~~~cvtd~~~p~~~af~fL~ei~~~F~~~-~~~~~~~~~~~~~  114 (222)
                      ...+.+++.|.....+-.+++.++|..|+.. -.| +-|+++||+..+  -.-.||.+|.+.|.++ ..+-.-....|-.
T Consensus       118 Ld~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~Tg-iKFVLltd~~~~--~ir~~l~~IyelYvd~V~kNPFY~~~~pI~  194 (219)
T 2j3t_D          118 LFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTG-IKFVVLADPRQA--GIDSLLRKIYEIYSDFALKNPFYSLEMPIR  194 (219)
T ss_dssp             HHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTS-CEEEEEECTTCC--CHHHHHHHHHHHHHHHHTTCTTCCTTSCCC
T ss_pred             HHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCC-CEEEEEecCCch--HHHHHHHHHHHHHHHHhccCCCCCCCCccc
Confidence            4555667776321135578888999888654 567 999999998633  3458889998777333 1100000011222


Q ss_pred             cccchHHHHHHHHhccCc
Q 027525          115 CVKFESIIGNIRKQYVDT  132 (222)
Q Consensus       115 ~~~f~~~l~~~~~~yn~~  132 (222)
                      ...|+..++++.+.++..
T Consensus       195 s~~Fd~~v~~l~~~~~~~  212 (219)
T 2j3t_D          195 CELFDQNLKLALEVAEKA  212 (219)
T ss_dssp             CHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHhhcc
Confidence            337999999999888653

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=80.28  E-value=0.46  Score=34.43  Aligned_cols=52  Identities=15%  Similarity=0.086  Sum_probs=29.8

Q ss_pred             HhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHH
Q 027525          142 NANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIA  193 (222)
Q Consensus       142 ~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~  193 (222)
                      ..+++.++.-+.+..+-+.++-+++-+-.++-++|.+.|... .+|.+.++..
T Consensus        32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A   84 (119)
T 2kog_A           32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA   84 (119)
T ss_dssp             CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555555555555556666666 6666666555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d1ifqa_	127	d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId	2e-38
d1ioua_	140	d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker	2e-18

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (321), Expect = 2e-38
 Identities = 43/129 (33%), Positives = 81/129 (62%), Gaps = 3/129 (2%)

Query: 2   VKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHH 61
           V +T++ RV+DGLPLA   +   Q       Y+ QA+ + ++++  +  P++ T+     
Sbjct: 2   VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGAM 59

Query: 62  SFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYSCVKFESI 121
           +FHY++E G+ C++ LC++++P+KLAF YL+DL  EF +     +  ++RPYS ++F++ 
Sbjct: 60  TFHYIIEQGV-CYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTF 118

Query: 122 IGNIRKQYV 130
           I   +K Y+
Sbjct: 119 IQKTKKLYI 127

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.4 bits (188), Expect = 2e-18
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 17/129 (13%)

Query: 17  ARGPRYLNQEHD--SFSFY-----KQQAEFILKEISRGALAPSKMTIRVDHHSFH-YLME 68
                 L++  D   F F+      Q   F  + ++    A  + +I   ++  H Y   
Sbjct: 13  GEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGERQSIEEGNYIGHVYARS 72

Query: 69  NGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKF----DISLIDKITRPYSCVKFESIIGN 124
            GI C + + D  YP + A+  L  +  E+       + + + +        + ++ I  
Sbjct: 73  EGI-CGVLITDKQYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYI-- 129

Query: 125 IRKQYVDTR 133
              +Y D  
Sbjct: 130 --SKYQDPS 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1ifqa_	127	Sec22b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	99.8
d2fh5a1	129	Signal recognition particle receptor alpha subunit	97.36
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	97.33
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	96.71
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	82.27

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7e-33  Score=207.03  Aligned_cols=124  Identities=35%  Similarity=0.769  Sum_probs=113.7

Q ss_pred             cEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCCC
Q 027525            2 VKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSS   81 (222)
Q Consensus         2 I~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~   81 (222)
                      |+|++|||++||+|||++++++.+.+.++.+++++++.++++++++.  ++|++++.++|.|||++++| ++|+|+||++
T Consensus         2 il~t~IaR~~DgL~L~~s~~~~~~~~~~~~~~k~qak~ll~kl~~~~--~~r~s~~~~~y~fHy~~~~g-i~yl~i~d~~   78 (127)
T d1ifqa_           2 VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGAMTFHYIIEQG-VCYLVLCEAA   78 (127)
T ss_dssp             CCEEEEEETTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHTTCCTTS--CSEEEEEETTEEEEEEEETT-EEEEEEEETT
T ss_pred             eEEEEEEEecCCcEEEEEeccccccchhHHHHHHHHHHHHHhCCCCC--CCcEEEEECCEEEEEEecCC-eEEEEEEccc
Confidence            89999999999999999997543445678889999999999998865  78999999999999999999 9999999999


Q ss_pred             CChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhc
Q 027525           82 YPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQY  129 (222)
Q Consensus        82 ~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y  129 (222)
                      ||+++||.||++|+++| ++|+. .+.+..+||+|.+|+.+|++++++|
T Consensus        79 ~~~~laF~fLeei~~eF~~~y~~-~i~~~~rpy~Fi~Fd~~iqk~k~~y  126 (127)
T d1ifqa_          79 FPKKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSFIEFDTFIQKTKKLY  126 (127)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTTGGGHHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHHHHHHHhhhh-hhhcccCCcchHHHHHHHHHHHHhc
Confidence            99999999999999999 99975 5777789999999999999999987

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=4.4e-19  Score=133.90  Aligned_cols=129  Identities=17%  Similarity=0.164  Sum_probs=96.3

Q ss_pred             cEEEEEEE--ecCCeeeeeeccCCC---CCCCChhH-HHHHHHHHHHHcCCCCCCCCceEEEEcCeEEE-EEeeCCcEEE
Q 027525            2 VKMTIVGR--VSDGLPLARGPRYLN---QEHDSFSF-YKQQAEFILKEISRGALAPSKMTIRVDHHSFH-YLMENGIGCF   74 (222)
Q Consensus         2 I~y~~IaR--~~d~~iLae~~~~~~---~~~~~~~~-~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h-~l~~~~~~~~   74 (222)
                      |++..|.|  .++.++|+...+.+.   -+.++..| ++-+++.++++.++    ++|++++.++|.|| |+.++| ++|
T Consensus         3 l~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~----g~r~sv~~~~y~~h~yv~~~g-l~~   77 (140)
T d1ioua_           3 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA----GERQSIEEGNYIGHVYARSEG-ICG   77 (140)
T ss_dssp             CCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCS----SSEEEEEETTEEEEEECCSSS-CEE
T ss_pred             EEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCC----CceEEEEcCCeEEEEEEeeCC-EEE
Confidence            45667777  345678888877520   01222333 55689999999988    57999999999999 677899 999


Q ss_pred             EEEeCCCCChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhccCchhhh
Q 027525           75 ITLCDSSYPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQA  136 (222)
Q Consensus        75 ~cvtd~~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~d  136 (222)
                      +|+||.+||+|+||.||+++.++| ++++.+.+...... .-..+-+.|++.+++|+||++.|
T Consensus        78 l~i~d~~Yp~r~AF~~L~~i~~eF~~~~~~~~~~~i~~~-~~~~~~~~l~~~l~kYQdP~~aD  139 (140)
T d1ioua_          78 VLITDKQYPVRPAYTLLNKILDEYLVAHPKEEWADVTET-NDALKMKQLDTYISKYQDPSQAD  139 (140)
T ss_dssp             EEEBCTTSCHHHHHHHHHHHHHHHHHSSCHHHHTTCSCC-CTTTSCHHHHHHHHHTTSSCGGG
T ss_pred             EEEECCCcchHHHHHHHHHHHHHHHHHcChHhhhhhhcc-ccccchHHHHHHHHHhCchhhcc
Confidence            999999999999999999999999 99975433221111 11123377999999999998766

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00086  Score=48.01  Aligned_cols=89  Identities=16%  Similarity=0.195  Sum_probs=60.6

Q ss_pred             EEEEEEecCCeeeeeeccCCCCCCCCh-hHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCc-EEEEEEeCCC
Q 027525            4 MTIVGRVSDGLPLARGPRYLNQEHDSF-SFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGI-GCFITLCDSS   81 (222)
Q Consensus         4 y~~IaR~~d~~iLae~~~~~~~~~~~~-~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~-~~~~cvtd~~   81 (222)
                      ++.+.+  ||+||=+|...    ..++ ..+....+.++=.  ..   .+..+++.|+|..++..+|+. ++|+++=..-
T Consensus         5 f~Iftk--GGiVLW~~~~~----~~~~~~~IN~LI~~vlLE--ER---~~~~~~~~d~y~lkw~~~Ne~~lvfV~vYQ~i   73 (129)
T d2fh5a1           5 FTIFSK--GGLVLWCFQGV----SDSCTGPVNALIRSVLLQ--ER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKI   73 (129)
T ss_dssp             EEEEET--TSBEEEEEBTT----TBSCCCHHHHHHHHTGGG--C----------CCCCCEEEEEEETTTTEEEEEEESCG
T ss_pred             EEEEeC--CeEEEEeecCC----CcccchhHHHHHHHhhee--cc---cCCCceeECCEEEEEEEeccCCEEEEEEEhhh
Confidence            455666  99999987653    2233 2233455555422  22   345568889999999988754 9999998887


Q ss_pred             CChHHHHHHHHHHHHHH-hcchh
Q 027525           82 YPRKLAFHYLQDLQKEF-QKFDI  103 (222)
Q Consensus        82 ~p~~~af~fL~ei~~~F-~~~~~  103 (222)
                      .+-...=.||+.++..| ..|.+
T Consensus        74 l~l~yvd~lL~~i~~~F~~~y~~   96 (129)
T d2fh5a1          74 LTLTYVDKLIDDVHRLFRDKYRT   96 (129)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHTHH
T ss_pred             hchHHHHHHHHHHHHHHHHHHHH
Confidence            78888889999999999 99975

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.27  E-value=6  Score=27.38  Aligned_cols=121  Identities=12%  Similarity=0.037  Sum_probs=66.7

Q ss_pred             EEEEEEEecCCeeeeeeccCCCCCCCCh-hH-------HHHHHHHHHHHcCCCCC-CCCceEEEEcCeEEEE-EeeCCcE
Q 027525            3 KMTIVGRVSDGLPLARGPRYLNQEHDSF-SF-------YKQQAEFILKEISRGAL-APSKMTIRVDHHSFHY-LMENGIG   72 (222)
Q Consensus         3 ~y~~IaR~~d~~iLae~~~~~~~~~~~~-~~-------~~~~a~~il~~i~~~~~-~~~k~s~~~~~~~~h~-l~~~~~~   72 (222)
                      .++.|.|  ++.||-+..-.. ....+. ++       +---+..++++..+... ..-+.....++|..|+ ..-.| +
T Consensus         6 ~f~IIg~--~~~pLY~~ef~~-~~~~~~~~~~~~~~~fi~hssLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~tg-~   81 (140)
T d2j3wa1           6 YFVIVGH--HDNPVFEMEFLP-PGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH-M   81 (140)
T ss_dssp             EEEEECT--TSCEEEEEEECC-SCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC-C
T ss_pred             EEEEEcC--CCCeeEEEecCC-cccccccchHHHHHHHHHHHHHHHHHHhcccCCCccceeEEecCCEEEEEEEcCCC-c
Confidence            4678888  888876543210 011111 10       00225566665554321 1123445678888775 45577 9


Q ss_pred             EEEEEeCCCCChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhc
Q 027525           73 CFITLCDSSYPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQY  129 (222)
Q Consensus        73 ~~~cvtd~~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y  129 (222)
                      =|+.++|+.-+.. .-.|++++.+.| .-..+.-- ....|-....|+..++++.++|
T Consensus        82 Kfvl~td~~~~~~-i~~~~~~v~~lYv~~v~NPfy-~~~~pI~s~~Fd~~v~~~~~~~  137 (140)
T d2j3wa1          82 RFIMLHDVRQEDG-IKNFFTDVYDLYIKFAMNPFY-EPNSPIRSSAFDRKVQFLGKKH  137 (140)
T ss_dssp             EEEEEESSCCHHH-HHHHHHHHHHHHHHHHHSTTC-CTTCCCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCcchH-HHHHHHHHHHHHHHHhhCccC-CCCCcccCHHHHHHHHHHHHHH
Confidence            9999998766543 357788888777 33221000 0012333337999999988877